Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008000.1 Hibiscus syriacus cultivar Beakdansim tig00110457_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1646480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 2 of 9
Found at i:218759 original size:10 final size:10
Alignment explanation
Indices: 218746--218822 Score: 62
Period size: 10 Copynumber: 8.3 Consensus size: 10
218736 ATAAACGAAC
218746 ACGAACATAA
1 ACGAACATAA
218756 ACGAACAT--
1 ACGAACATAA
218764 --GAACATAA
1 ACGAACATAA
*
218772 ACGAACACGAA
1 ACGAACA-TAA
218783 CACGAACATAA
1 -ACGAACATAA
*
218794 ATGAAC----
1 ACGAACATAA
218800 ACGAACATAA
1 ACGAACATAA
218810 ACGAACATAA
1 ACGAACATAA
218820 ACG
1 ACG
218823 TTGGAGACCA
Statistics
Matches: 53, Mismatches: 4, Indels: 20
0.69 0.05 0.26
Matches are distributed among these distances:
6 11 0.21
10 31 0.58
11 4 0.08
12 7 0.13
ACGTcount: A:0.56, C:0.22, G:0.13, T:0.09
Consensus pattern (10 bp):
ACGAACATAA
Found at i:218767 original size:22 final size:22
Alignment explanation
Indices: 218756--218806 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
218746 ACGAACATAA
*
218756 ACGAACATGAACATAAACGAAC
1 ACGAACACGAACATAAACGAAC
*
218778 ACGAACACGAACATAAATGAAC
1 ACGAACACGAACATAAACGAAC
218800 ACGAACA
1 ACGAACA
218807 TAAACGAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.55, C:0.24, G:0.14, T:0.08
Consensus pattern (22 bp):
ACGAACACGAACATAAACGAAC
Found at i:218789 original size:38 final size:38
Alignment explanation
Indices: 218740--218816 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
218730 ACAAACATAA
*
218740 ACGAACACGAACATAAACGAACATGAACATAAACGAAC
1 ACGAACACGAACATAAACGAACACGAACATAAACGAAC
*
218778 ACGAACACGAACATAAATGAACACGAACATAAACGAAC
1 ACGAACACGAACATAAACGAACACGAACATAAACGAAC
218816 A
1 A
218817 TAAACGTTGG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.56, C:0.23, G:0.13, T:0.08
Consensus pattern (38 bp):
ACGAACACGAACATAAACGAACACGAACATAAACGAAC
Found at i:218798 original size:32 final size:32
Alignment explanation
Indices: 218733--218800 Score: 93
Period size: 32 Copynumber: 2.1 Consensus size: 32
218723 AATGTACACA
* *
218733 AACATAAACGAACACGAACATAAACGAACATG
1 AACATAAACGAACACGAACACAAACGAAAATG
*
218765 AACATAAACGAACACGAACACGAAC-ATAAATG
1 AACATAAACGAACACGAACACAAACGA-AAATG
218797 AACA
1 AACA
218801 CGAACATAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
31 1 0.03
32 31 0.97
ACGTcount: A:0.57, C:0.22, G:0.12, T:0.09
Consensus pattern (32 bp):
AACATAAACGAACACGAACACAAACGAAAATG
Found at i:218814 original size:32 final size:32
Alignment explanation
Indices: 218714--218816 Score: 116
Period size: 38 Copynumber: 3.0 Consensus size: 32
218704 TAATAAATAA
* *
218714 ACGAACATAAATGTACACAAACATAAACGAAC
1 ACGAACATAAATGAACACGAACATAAACGAAC
* *
218746 ACGAACATAAACGAACATGAACATAAACGAACACGAAC
1 ACGAACATAAATGAACACGAACAT-----AA-ACGAAC
218784 ACGAACATAAATGAACACGAACATAAACGAAC
1 ACGAACATAAATGAACACGAACATAAACGAAC
218816 A
1 A
218817 TAAACGTTGG
Statistics
Matches: 59, Mismatches: 6, Indels: 12
0.77 0.08 0.16
Matches are distributed among these distances:
32 27 0.46
33 2 0.03
37 2 0.03
38 28 0.47
ACGTcount: A:0.56, C:0.22, G:0.12, T:0.10
Consensus pattern (32 bp):
ACGAACATAAATGAACACGAACATAAACGAAC
Found at i:219935 original size:14 final size:14
Alignment explanation
Indices: 219918--219944 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
219908 ATGAACATAA
219918 ACGAACATAACCGT
1 ACGAACATAACCGT
219932 ACGAACATAACCG
1 ACGAACATAACCG
219945 AACATTCACG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.30, G:0.15, T:0.11
Consensus pattern (14 bp):
ACGAACATAACCGT
Found at i:221102 original size:17 final size:17
Alignment explanation
Indices: 221069--221103 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
221059 CACTAGTTCA
221069 AATAATATCATCATAAT
1 AATAATATCATCATAAT
221086 AATAA-ATCATCACTAAT
1 AATAATATCATCA-TAAT
221103 A
1 A
221104 GTTATATCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.31
Consensus pattern (17 bp):
AATAATATCATCATAAT
Found at i:221422 original size:32 final size:32
Alignment explanation
Indices: 221384--221506 Score: 131
Period size: 32 Copynumber: 3.8 Consensus size: 32
221374 TGTACATTAT
*
221384 CTAACTCTGTTGTACATTATCTGAATGCAACA
1 CTAACTCTATTGTACATTATCTGAATGCAACA
** ** *
221416 CTAACTCTGCTGTGTATTATATGAATGCAACA
1 CTAACTCTATTGTACATTATCTGAATGCAACA
* * * *
221448 TTGACTCTATTGTACATTATCTGAA-GAAAATA
1 CTAACTCTATTGTACATTATCTGAATG-CAACA
*
221480 CTAACTCTATTGTGCATTATCTGAATG
1 CTAACTCTATTGTACATTATCTGAATG
221507 TAATATTGAT
Statistics
Matches: 73, Mismatches: 16, Indels: 3
0.79 0.17 0.03
Matches are distributed among these distances:
31 1 0.01
32 71 0.97
33 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (32 bp):
CTAACTCTATTGTACATTATCTGAATGCAACA
Found at i:221499 original size:64 final size:64
Alignment explanation
Indices: 221387--221522 Score: 166
Period size: 64 Copynumber: 2.1 Consensus size: 64
221377 ACATTATCTA
* * * *
221387 ACTCTGTTGTACATTATCTGAATGCAACACTAACTCTGCTGTGTATTATATGAATGCAACATTG
1 ACTCTATTGTACATTATCTGAATGAAACACTAACTCTACTGTGCATTATATGAATGCAACATTG
* * * * *
221451 ACTCTATTGTACATTATCTGAA-GAAAATACTAACTCTATTGTGCATTATCTGAATGTAATATTG
1 ACTCTATTGTACATTATCTGAATG-AAACACTAACTCTACTGTGCATTATATGAATGCAACATTG
*
221515 ATTCTATT
1 ACTCTATT
221523 ATGTATTATC
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
63 1 0.02
64 60 0.98
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (64 bp):
ACTCTATTGTACATTATCTGAATGAAACACTAACTCTACTGTGCATTATATGAATGCAACATTG
Found at i:221521 original size:32 final size:32
Alignment explanation
Indices: 221387--221543 Score: 118
Period size: 32 Copynumber: 4.9 Consensus size: 32
221377 ACATTATCTA
* * * * * *
221387 ACTCTGTTGTACATTATCTGAATGCAACACTA
1 ACTCTATTGTGCATTATCTGAATGTAATATTG
** * * * *
221419 ACTCTGCTGTGTATTATATGAATGCAACATTG
1 ACTCTATTGTGCATTATCTGAATGTAATATTG
* * * *
221451 ACTCTATTGTACATTATCTGAA-GAAAATACTA
1 ACTCTATTGTGCATTATCTGAATG-TAATATTG
221483 ACTCTATTGTGCATTATCTGAATGTAATATTG
1 ACTCTATTGTGCATTATCTGAATGTAATATTG
* * * *
221515 ATTCTATTATGTATTATCTAAATGTAATA
1 ACTCTATTGTGCATTATCTGAATGTAATA
221544 CCGACTCTGT
Statistics
Matches: 100, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
31 1 0.01
32 98 0.98
33 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (32 bp):
ACTCTATTGTGCATTATCTGAATGTAATATTG
Found at i:221544 original size:64 final size:64
Alignment explanation
Indices: 221387--221544 Score: 156
Period size: 64 Copynumber: 2.5 Consensus size: 64
221377 ACATTATCTA
* * * * * *
221387 ACTCTGTTGTACATTATCTGAATGCAACACTAACTCTGCTGTGTATTATATGAATGCAACATTG
1 ACTCTATTATACATTATCTGAATGAAATACTAACTCTACTGTGCATTATATGAATGCAACATTG
* * * * *
221451 ACTCTATTGTACATTATCTGAA-GAAAATACTAACTCTATTGTGCATTATCTGAATGTAATATTG
1 ACTCTATTATACATTATCTGAATG-AAATACTAACTCTACTGTGCATTATATGAATGCAACATTG
* ** * *
221515 ATTCTATTATGTATTATCTAAATGTAATAC
1 ACTCTATTATACATTATCTGAATGAAATAC
221545 CGACTCTGTT
Statistics
Matches: 77, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
63 1 0.01
64 75 0.97
65 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (64 bp):
ACTCTATTATACATTATCTGAATGAAATACTAACTCTACTGTGCATTATATGAATGCAACATTG
Found at i:227606 original size:3 final size:3
Alignment explanation
Indices: 227600--227667 Score: 118
Period size: 3 Copynumber: 22.7 Consensus size: 3
227590 TTTTTTTATT
* *
227600 TAA TAA TAA TAA TAA TAG TAA TAA TAA TAA AAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
227648 TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TA
227668 TGCTGAAAAA
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 61 1.00
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:227942 original size:73 final size:73
Alignment explanation
Indices: 227818--227994 Score: 318
Period size: 73 Copynumber: 2.4 Consensus size: 73
227808 GAGGTAATAT
* * * *
227818 CATCTTGCACTGTAGGTATTACAGATGACCCTGAGGCTTTAAGATCAAAAAGTTCCCGAAGGCTT
1 CATCATGCACTGAAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAAGCTCCCGAAGGCTT
227883 TTTGAAAA
66 TTTGAAAA
227891 CATCATGCACTGAAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAAGCTCCCGAAGGCTT
1 CATCATGCACTGAAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAAGCTCCCGAAGGCTT
227956 TTTGAAAA
66 TTTGAAAA
227964 CATCATGCACTGAAGGTCTTACAGATGACCC
1 CATCATGCACTGAAGGTCTTACAGATGACCC
227995 AAAGGTTTTG
Statistics
Matches: 100, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 100 1.00
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (73 bp):
CATCATGCACTGAAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAAGCTCCCGAAGGCTT
TTTGAAAA
Found at i:228019 original size:45 final size:45
Alignment explanation
Indices: 227945--228171 Score: 391
Period size: 45 Copynumber: 5.0 Consensus size: 45
227935 TCAAAAAGCT
*
227945 CCCGAAGGCTTTTTGAAAACATCATGCACTGAAGGTCTTACAGATGA
1 CCCGAAGG--TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGA
* *
227992 CCCAAAGGTTTTGAAAACATAATGCACTGAAGGGCTTACAGATGA
1 CCCGAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGA
228037 CCCGAAGGTTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGA
1 CCCGAAGG-TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGA
228083 CCCGAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGA
1 CCCGAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGA
*
228128 CCCGAAGGTTTTGAAAACATCATGCACTGAAGGACTTACAGATG
1 CCCGAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATG
228172 TGGGAAATAG
Statistics
Matches: 173, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
45 122 0.71
46 44 0.25
47 7 0.04
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (45 bp):
CCCGAAGGTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGA
Found at i:228109 original size:91 final size:91
Alignment explanation
Indices: 227945--228171 Score: 402
Period size: 91 Copynumber: 2.5 Consensus size: 91
227935 TCAAAAAGCT
*
227945 CCCGAAGGCTTTTTGAAAACATCATGCACTGAAGGTCTTACAGATGACCCAAAGGTTTTGAAAAC
1 CCCGAAGG-TTTTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCAAAGGTTTTGAAAAC
228010 ATAATGCACTGAAGGGCTTACAGATGA
65 ATAATGCACTGAAGGGCTTACAGATGA
* *
228037 CCCGAAGGTTTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACA
1 CCCGAAGGTTTTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCAAAGGTTTTGAAAACA
*
228102 TCATGCACTGAAGGGCTTACAGATGA
66 TAATGCACTGAAGGGCTTACAGATGA
228128 CCCGAAGG-TTTTGAAAACATCATGCACTGAAGGACTTACAGATG
1 CCCGAAGGTTTTTGAAAACATCATGCACTGAAGGACTTACAGATG
228172 TGGGAAATAG
Statistics
Matches: 131, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
90 35 0.27
91 88 0.67
92 8 0.06
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (91 bp):
CCCGAAGGTTTTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCAAAGGTTTTGAAAACA
TAATGCACTGAAGGGCTTACAGATGA
Found at i:230240 original size:68 final size:68
Alignment explanation
Indices: 230136--230366 Score: 320
Period size: 68 Copynumber: 3.3 Consensus size: 68
230126 TACCCCAACT
* * * *
230136 TTGGCTAATACAAACGTTCATCAACATTCTTGATTCTGATTGAAAGGGGCTTTCAGCATGCCCCA
1 TTGGCTTATACAAACGTTCATCAATATTCCTAATTCTGATTGAAAGGGGCTTTCAGCATGCCCCA
230201 GCA
66 GCA
230204 TTGGCTTATACAAACGTTCATCAATATTCCTAATTCTGATTGAAAGGGGCTTTCAGCATGCCCCA
1 TTGGCTTATACAAACGTTCATCAATATTCCTAATTCTGATTGAAAGGGGCTTTCAGCATGCCCCA
*
230269 GTA
66 GCA
* *
230272 TTGGCTTATACAAACGTTCA-AAATATATCAACATTCATGATTCTAATTGAAAGGGGCTTTCAGC
1 TTGGCTTATACAAACGTTCATCAATAT-TC--C--T-A--ATTCTGATTGAAAGGGGCTTTCAGC
230336 ATGCCCCAGCA
58 ATGCCCCAGCA
230347 TTGGCTTATACAAACGTTCA
1 TTGGCTTATACAAACGTTCA
230367 AAATATATCA
Statistics
Matches: 147, Mismatches: 8, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
67 5 0.03
68 85 0.58
70 1 0.01
72 1 0.01
73 1 0.01
75 54 0.37
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (68 bp):
TTGGCTTATACAAACGTTCATCAATATTCCTAATTCTGATTGAAAGGGGCTTTCAGCATGCCCCA
GCA
Found at i:230350 original size:75 final size:75
Alignment explanation
Indices: 230236--230408 Score: 310
Period size: 75 Copynumber: 2.3 Consensus size: 75
230226 AATATTCCTA
*
230236 ATTCTGATTGAAAGGGGCTTTCAGCATGCCCCAGTATTGGCTTATACAAACGTTCAAAATATATC
1 ATTCTGATTGAAAGGGGCTTTCAGCATGCCCCAGCATTGGCTTATACAAACGTTCAAAATATATC
230301 AACATTCATG
66 AACATTCATG
*
230311 ATTCTAATTGAAAGGGGCTTTCAGCATGCCCCAGCATTGGCTTATACAAACGTTCAAAATATATC
1 ATTCTGATTGAAAGGGGCTTTCAGCATGCCCCAGCATTGGCTTATACAAACGTTCAAAATATATC
230376 AACATTCATG
66 AACATTCATG
* *
230386 ATTCTGAGTGAAATGGGCTTTCA
1 ATTCTGATTGAAAGGGGCTTTCA
230409 ACATACTCTA
Statistics
Matches: 93, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 93 1.00
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.31
Consensus pattern (75 bp):
ATTCTGATTGAAAGGGGCTTTCAGCATGCCCCAGCATTGGCTTATACAAACGTTCAAAATATATC
AACATTCATG
Found at i:233606 original size:8 final size:8
Alignment explanation
Indices: 233593--233622 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
233583 CATGATTCAA
233593 TTTTTTCC
1 TTTTTTCC
233601 TTTTTTCC
1 TTTTTTCC
*
233609 TTTTTCCC
1 TTTTTTCC
233617 TTTTTT
1 TTTTTT
233623 TTTTGAATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTTTTCC
Found at i:236012 original size:8 final size:7
Alignment explanation
Indices: 235999--236039 Score: 52
Period size: 6 Copynumber: 6.1 Consensus size: 7
235989 CAAACGTAAG
235999 AATGCAAA
1 AATGC-AA
236007 AATGCAA
1 AATGCAA
236014 AATG-AA
1 AATGCAA
236020 AATGC-A
1 AATGCAA
236026 AATGC-A
1 AATGCAA
236032 AATGCAA
1 AATGCAA
236039 A
1 A
236040 TGTGTGAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
6 18 0.58
7 8 0.26
8 5 0.16
ACGTcount: A:0.59, C:0.12, G:0.15, T:0.15
Consensus pattern (7 bp):
AATGCAA
Found at i:236124 original size:15 final size:15
Alignment explanation
Indices: 236091--236128 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
236081 ATAAAAGTAT
236091 AAATG-AAAAATGAA
1 AAATGCAAAAATGAA
* *
236105 AAATGCAAAGATGCA
1 AAATGCAAAAATGAA
236120 AAATGCAAA
1 AAATGCAAA
236129 CGTATGTATG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 5 0.24
15 16 0.76
ACGTcount: A:0.63, C:0.08, G:0.16, T:0.13
Consensus pattern (15 bp):
AAATGCAAAAATGAA
Found at i:236288 original size:43 final size:44
Alignment explanation
Indices: 236207--236289 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 44
236197 TCGTGCATCA
* *
236207 AACAAAACTTTTACATGCAGGGGACAACTTTCAGTCCTAACTTC
1 AACAAAACTTTTACATACAGGGGACAACTTTCACTCCTAACTTC
* * * *
236251 AACAAAAC-TTTACATATAGGGGATAATTTTCCCTCCTAA
1 AACAAAACTTTTACATACAGGGGACAACTTTCACTCCTAA
236290 ATTCTTTAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
43 25 0.76
44 8 0.24
ACGTcount: A:0.36, C:0.23, G:0.12, T:0.29
Consensus pattern (44 bp):
AACAAAACTTTTACATACAGGGGACAACTTTCACTCCTAACTTC
Found at i:236363 original size:30 final size:30
Alignment explanation
Indices: 236328--236389 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
236318 CTTATGGGTA
*
236328 ATATTGCTTGTCTGGACTACAGCTTCTTCC
1 ATATTGCTTATCTGGACTACAGCTTCTTCC
* *
236358 ATATTGCTTATTTGGACTGCAGCTTCTTCC
1 ATATTGCTTATCTGGACTACAGCTTCTTCC
236388 AT
1 AT
236390 GACATTCTCT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.18, C:0.24, G:0.16, T:0.42
Consensus pattern (30 bp):
ATATTGCTTATCTGGACTACAGCTTCTTCC
Found at i:237679 original size:18 final size:19
Alignment explanation
Indices: 237658--237693 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
237648 AATAATATAT
237658 ATAAATAT-TATAAAAATA
1 ATAAATATATATAAAAATA
*
237676 ATAAGTATATATAAAAAT
1 ATAAATATATATAAAAAT
237694 TTTGAAAAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (19 bp):
ATAAATATATATAAAAATA
Found at i:240043 original size:3 final size:3
Alignment explanation
Indices: 240037--240091 Score: 85
Period size: 3 Copynumber: 18.7 Consensus size: 3
240027 TTTTTTTATT
* *
240037 TAA TAA TAA TAA TAA TAG TAA TAA TAA TAA -AA TAA TAA TAA TAA AAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
240084 TAA TAA TA
1 TAA TAA TA
240092 TGCTGAAAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
2 2 0.04
3 45 0.96
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:240072 original size:26 final size:26
Alignment explanation
Indices: 240041--240091 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
240031 TTTATTTAAT
**
240041 AATAATAATAATAGTAATAATAATAA
1 AATAATAATAATAAAAATAATAATAA
240067 AATAATAATAATAAAAATAATAATA
1 AATAATAATAATAAAAATAATAATA
240092 TGCTGAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (26 bp):
AATAATAATAATAAAAATAATAATAA
Found at i:240473 original size:31 final size:31
Alignment explanation
Indices: 240438--240498 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
240428 TATCTTGGTG
* * *
240438 CCTAAGATTTTCTCCGTTACTATTTTAGGTT
1 CCTAACATTTTCTCCATTACAATTTTAGGTT
240469 CCTAACATTTTCTCCATTACAATTTTAGGT
1 CCTAACATTTTCTCCATTACAATTTTAGGT
240499 GCCCGGACGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.23, C:0.21, G:0.10, T:0.46
Consensus pattern (31 bp):
CCTAACATTTTCTCCATTACAATTTTAGGTT
Found at i:240585 original size:19 final size:20
Alignment explanation
Indices: 240561--240621 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 20
240551 CTGGTAATTT
240561 TAAAAATATTTA-TTTAAAA
1 TAAAAATATTTATTTTAAAA
*
240580 TAAAAATATATAATTTTAAAA
1 TAAAAATAT-TTATTTTAAAA
* *
240601 AAAAAACTATTT-TTTTCAAA
1 TAAAAA-TATTTATTTTAAAA
240621 T
1 T
240622 CTTAAAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
19 9 0.26
20 9 0.26
21 13 0.38
22 3 0.09
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (20 bp):
TAAAAATATTTATTTTAAAA
Found at i:240908 original size:28 final size:27
Alignment explanation
Indices: 240856--240908 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
240846 GAAGCATGGG
240856 ATGATGGGGAGAGCACAGGCAAAGGAC
1 ATGATGGGGAGAGCACAGGCAAAGGAC
* *
240883 ATGATGGGGAAGAGCACCGGCGAAGG
1 ATGATGGGG-AGAGCACAGGCAAAGG
240909 GGAATGCGGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 9 0.39
28 14 0.61
ACGTcount: A:0.34, C:0.15, G:0.43, T:0.08
Consensus pattern (27 bp):
ATGATGGGGAGAGCACAGGCAAAGGAC
Found at i:247485 original size:27 final size:27
Alignment explanation
Indices: 247422--247485 Score: 110
Period size: 27 Copynumber: 2.4 Consensus size: 27
247412 CATGATATGA
247422 TTCTTACCTTGGTTTGATGAGAAATGT
1 TTCTTACCTTGGTTTGATGAGAAATGT
*
247449 TTATTACCTTGGTTTGATGAGAAATGT
1 TTCTTACCTTGGTTTGATGAGAAATGT
*
247476 TTCTTTCCTT
1 TTCTTACCTT
247486 TACTTAGGTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.20, C:0.12, G:0.19, T:0.48
Consensus pattern (27 bp):
TTCTTACCTTGGTTTGATGAGAAATGT
Found at i:249062 original size:20 final size:20
Alignment explanation
Indices: 249039--249146 Score: 99
Period size: 20 Copynumber: 5.3 Consensus size: 20
249029 GTTTCCAAAT
249039 TCGCAACGCGAATATGTAAA
1 TCGCAACGCGAATATGTAAA
** * * **
249059 TCGCATTGCGATTTTCCAAA
1 TCGCAACGCGAATATGTAAA
* *
249079 TTCACAACGCAAATATGTAAA
1 -TCGCAACGCGAATATGTAAA
* *
249100 TCGTAACGCGAATCTGTAAA
1 TCGCAACGCGAATATGTAAA
* *
249120 TAGCAACGCGAATCTGTAAA
1 TCGCAACGCGAATATGTAAA
249140 TCGCAAC
1 TCGCAAC
249147 ACAGAAGTCA
Statistics
Matches: 66, Mismatches: 21, Indels: 2
0.74 0.24 0.02
Matches are distributed among these distances:
20 54 0.82
21 12 0.18
ACGTcount: A:0.37, C:0.22, G:0.17, T:0.24
Consensus pattern (20 bp):
TCGCAACGCGAATATGTAAA
Found at i:249180 original size:20 final size:20
Alignment explanation
Indices: 249155--249225 Score: 97
Period size: 20 Copynumber: 3.5 Consensus size: 20
249145 ACACAGAAGT
* *
249155 CAAATTCACAATGCGATTTC
1 CAAATTCGCAATGCGATTTA
* *
249175 CAAATTCGCAACGTGATTTA
1 CAAATTCGCAATGCGATTTA
*
249195 CAAATTCGCCATGCGATTTA
1 CAAATTCGCAATGCGATTTA
249215 CAAATTCGCAA
1 CAAATTCGCAA
249226 CACTGAATTT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.35, C:0.24, G:0.13, T:0.28
Consensus pattern (20 bp):
CAAATTCGCAATGCGATTTA
Found at i:249303 original size:20 final size:19
Alignment explanation
Indices: 249217--249308 Score: 87
Period size: 20 Copynumber: 4.6 Consensus size: 19
249207 GCGATTTACA
**
249217 AATTCGCAACACTGAATTTCA
1 AATTCGCAACAC--AATTTTG
*
249238 AATTCGCAACTCAATTTCTG
1 AATTCGCAACACAATTT-TG
*
249258 AATTCGCAACTCAATTTTCG
1 AATTCGCAACACAATTTT-G
249278 AATTCGCAACACGAATTTT-
1 AATTCGCAACAC-AATTTTG
249297 AATTTCGCAACA
1 AA-TTCGCAACA
249309 GGTTTTATTT
Statistics
Matches: 63, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
19 8 0.13
20 38 0.60
21 17 0.27
ACGTcount: A:0.35, C:0.24, G:0.10, T:0.32
Consensus pattern (19 bp):
AATTCGCAACACAATTTTG
Found at i:249500 original size:16 final size:15
Alignment explanation
Indices: 249465--249503 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
249455 TCCTCATCTC
*
249465 TAATTTTTTTTTACA
1 TAATTTTTTTCTACA
*
249480 TAATTTTATTTCTATA
1 TAATTTT-TTTCTACA
249496 TAATTTTT
1 TAATTTTT
249504 CAATGATTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (15 bp):
TAATTTTTTTCTACA
Found at i:250096 original size:12 final size:12
Alignment explanation
Indices: 250075--250108 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
250065 ACCACATTTT
*
250075 CAATACCAAACA
1 CAATATCAAACA
250087 CAATATCAAACA
1 CAATATCAAACA
*
250099 CAATCTCAAA
1 CAATATCAAA
250109 ACCCACAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.56, C:0.29, G:0.00, T:0.15
Consensus pattern (12 bp):
CAATATCAAACA
Found at i:250285 original size:24 final size:24
Alignment explanation
Indices: 250232--250287 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
250222 CAGTATTCGA
*
250232 AATTTGATCTTGGTCAATACCCGG
1 AATTTGATCTTGGTCAATACCCAG
*
250256 AATTTGATCTTGGTCAATACTCAG
1 AATTTGATCTTGGTCAATACCCAG
*
250280 ATTTTGAT
1 AATTTGAT
250288 GATGTTTCAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (24 bp):
AATTTGATCTTGGTCAATACCCAG
Found at i:250470 original size:3 final size:3
Alignment explanation
Indices: 250462--250489 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
250452 ATATAACCCT
250462 GAA GAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA G
250490 TCCCCGAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:252143 original size:18 final size:18
Alignment explanation
Indices: 252120--252155 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
252110 AAGCAAAAGG
252120 AAATCAAAATCGCAATCA
1 AAATCAAAATCGCAATCA
*
252138 AAATCAAAATCTCAATCA
1 AAATCAAAATCGCAATCA
252156 CAACTGGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.56, C:0.22, G:0.03, T:0.19
Consensus pattern (18 bp):
AAATCAAAATCGCAATCA
Found at i:253121 original size:67 final size:67
Alignment explanation
Indices: 253042--253191 Score: 257
Period size: 67 Copynumber: 2.2 Consensus size: 67
253032 TTCTGGGTTA
* *
253042 GGGGAACCGATACCCCTTCAACAAATATGAATTTCCAGAATTCTAGAGGGGAATCGATACCCCCA
1 GGGGAACCGATACCCCTTCAACAAATATGAATTTCCAGAATGCTAGAGGGGAACCGATA-CCCCA
253107 -GG
65 GGG
253109 GGGGAACCGATACCCCTTCAACAAATATGAATTTCCAGAATGCTAGAGGGGAACCGATACCCCAG
1 GGGGAACCGATACCCCTTCAACAAATATGAATTTCCAGAATGCTAGAGGGGAACCGATACCCCAG
253174 GG
66 GG
*
253176 GGGGAACCGATTCCCC
1 GGGGAACCGATACCCC
253192 CATGAGAAAA
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
66 5 0.06
67 74 0.94
ACGTcount: A:0.31, C:0.27, G:0.25, T:0.17
Consensus pattern (67 bp):
GGGGAACCGATACCCCTTCAACAAATATGAATTTCCAGAATGCTAGAGGGGAACCGATACCCCAG
GG
Found at i:253871 original size:23 final size:23
Alignment explanation
Indices: 253804--253863 Score: 111
Period size: 23 Copynumber: 2.6 Consensus size: 23
253794 ATCATTATAT
*
253804 GGCACTACGGTGCAATTCTACGG
1 GGCACTTCGGTGCAATTCTACGG
253827 GGCACTTCGGTGCAATTCTACGG
1 GGCACTTCGGTGCAATTCTACGG
253850 GGCACTTCGGTGCA
1 GGCACTTCGGTGCA
253864 TTTATACGAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (23 bp):
GGCACTTCGGTGCAATTCTACGG
Found at i:260639 original size:23 final size:23
Alignment explanation
Indices: 260606--260665 Score: 102
Period size: 23 Copynumber: 2.6 Consensus size: 23
260596 ATCATTATAT
*
260606 GGCACTACGGTGCAATTCTACGG
1 GGCACTTCGGTGCAATTCTACGG
*
260629 GGCACTTCGGTGCAATTTTACGG
1 GGCACTTCGGTGCAATTCTACGG
260652 GGCACTTCGGTGCA
1 GGCACTTCGGTGCA
260666 TTTATACGAG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.18, C:0.25, G:0.32, T:0.25
Consensus pattern (23 bp):
GGCACTTCGGTGCAATTCTACGG
Found at i:260673 original size:23 final size:22
Alignment explanation
Indices: 260606--260673 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 22
260596 ATCATTATAT
* *
260606 GGCACTACGGTGCAATTCTACGG
1 GGCACTTCGGTGC-ATTTTACGG
260629 GGCACTTCGGTGCAATTTTACGG
1 GGCACTTCGGTGC-ATTTTACGG
260652 GGCACTTCGGTGCATTTATACG
1 GGCACTTCGGTGCATTT-TACG
260674 AGCTGTGGTG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
22 4 0.10
23 38 0.90
ACGTcount: A:0.19, C:0.24, G:0.29, T:0.28
Consensus pattern (22 bp):
GGCACTTCGGTGCATTTTACGG
Found at i:261352 original size:29 final size:29
Alignment explanation
Indices: 261319--261379 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
261309 AAATTCGCAG
*
261319 CGCAAAAATCGCAATGCGAA-TTTAACTTT
1 CGCAAAAATCGCAACGC-AATTTTAACTTT
* *
261348 CGCAACAATCGCAACGCAATTTTTACTTT
1 CGCAAAAATCGCAACGCAATTTTAACTTT
261377 CGC
1 CGC
261380 GTTGCGAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 2 0.07
29 26 0.93
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCAAAAATCGCAACGCAATTTTAACTTT
Found at i:261540 original size:25 final size:25
Alignment explanation
Indices: 261501--261550 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
261491 AAATCAATTA
*
261501 AACATTGTTGCGGGTACATTATTTG
1 AACATTGTTACGGGTACATTATTTG
*
261526 AACATTGTTATGGGTACATTATTTG
1 AACATTGTTACGGGTACATTATTTG
261551 GAAAATAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.26, C:0.10, G:0.22, T:0.42
Consensus pattern (25 bp):
AACATTGTTACGGGTACATTATTTG
Found at i:262845 original size:22 final size:22
Alignment explanation
Indices: 262800--262852 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
262790 TTTGAGAGAT
*
262800 GGAGATA--GACGGATTTTGTA
1 GGAGATAGGGACGGATTTTGCA
* *
262820 GGAGATGGGGACGGATTTTGCC
1 GGAGATAGGGACGGATTTTGCA
262842 GGAGATAGGGA
1 GGAGATAGGGA
262853 TAGATGTCAC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 6 0.22
22 21 0.78
ACGTcount: A:0.26, C:0.08, G:0.43, T:0.23
Consensus pattern (22 bp):
GGAGATAGGGACGGATTTTGCA
Found at i:263054 original size:20 final size:20
Alignment explanation
Indices: 263031--263100 Score: 77
Period size: 20 Copynumber: 3.5 Consensus size: 20
263021 TAACTTATGT
* *
263031 GTTGTGAATTACAAATTCAC
1 GTTGCGAATTACAAATTCGC
* * *
263051 GTTGAGATTTACAGATTCGC
1 GTTGCGAATTACAAATTCGC
* *
263071 GTTGCGATTTACATATTCGC
1 GTTGCGAATTACAAATTCGC
263091 GTTGCGAATT
1 GTTGCGAATT
263101 TGAAAACTGA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.37
Consensus pattern (20 bp):
GTTGCGAATTACAAATTCGC
Found at i:263727 original size:29 final size:29
Alignment explanation
Indices: 263692--263758 Score: 116
Period size: 29 Copynumber: 2.3 Consensus size: 29
263682 TTCGATTCAA
263692 ACGGTTCACAGTCGATTCAGCGATTCTTT
1 ACGGTTCACAGTCGATTCAGCGATTCTTT
*
263721 GCGGTTCACAGTCGATTCAGCGATTCTTT
1 ACGGTTCACAGTCGATTCAGCGATTCTTT
*
263750 ATGGTTCAC
1 ACGGTTCAC
263759 TAGTAGAGAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.34
Consensus pattern (29 bp):
ACGGTTCACAGTCGATTCAGCGATTCTTT
Found at i:264229 original size:14 final size:14
Alignment explanation
Indices: 264210--264247 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
264200 AAGTGACAAA
*
264210 AAAGTTCAATATCT
1 AAAGTTCAACATCT
*
264224 AAAGTTTAACATCT
1 AAAGTTCAACATCT
264238 AAAGTTCAAC
1 AAAGTTCAAC
264248 GAGTAAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.45, C:0.16, G:0.08, T:0.32
Consensus pattern (14 bp):
AAAGTTCAACATCT
Found at i:265558 original size:20 final size:21
Alignment explanation
Indices: 265533--265584 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
265523 TTTTCCCAAT
*
265533 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
265553 TCGCAAAGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
265574 TCGCAATGCGA
1 TCGCAATGCGA
265585 TACTGACTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.40, C:0.17, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:265602 original size:20 final size:20
Alignment explanation
Indices: 265573--265707 Score: 112
Period size: 20 Copynumber: 6.7 Consensus size: 20
265563 AATTGGGAAA
265573 ATCGCAATGCGATACTGACT
1 ATCGCAATGCGATACTGACT
* *
265593 ATCTCAATGCGATACTTACT
1 ATCGCAATGCGATACTGACT
* *
265613 ATCGCAATGCGATAAT-ACAAA
1 ATCGCAATGCGATACTGAC--T
* *
265634 ATCGCAACGAGATACTGACT
1 ATCGCAATGCGATACTGACT
* * *
265654 TTCGCAACGCGATTCTGACT
1 ATCGCAATGCGATACTGACT
* * *
265674 TTCGCAACGCGATAAT-ACAT
1 ATCGCAATGCGATACTGAC-T
265694 AATCGCAATGCGAT
1 -ATCGCAATGCGAT
265708 TTTCAAAGCG
Statistics
Matches: 94, Mismatches: 16, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
19 4 0.04
20 64 0.68
21 24 0.26
22 2 0.02
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.25
Consensus pattern (20 bp):
ATCGCAATGCGATACTGACT
Found at i:265635 original size:61 final size:61
Alignment explanation
Indices: 265570--265707 Score: 186
Period size: 61 Copynumber: 2.3 Consensus size: 61
265560 GCGAATTGGG
* * * *
265570 AAAATCGCAATGCGATACTGACTATCTCAATGCGATACTTACTATCGCAATGCGATAATAC
1 AAAATCGCAATGCGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
* * * * *
265631 AAAATCGCAACGAGATACTGACTTTCGCAACGCGATTCTGACTTTCGCAACGCGATAATAC
1 AAAATCGCAATGCGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
*
265692 ATAATCGCAATGCGAT
1 AAAATCGCAATGCGAT
265708 TTTCAAAGCG
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
61 65 1.00
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.25
Consensus pattern (61 bp):
AAAATCGCAATGCGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
Found at i:265903 original size:22 final size:22
Alignment explanation
Indices: 265875--265918 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
265865 CACTCTCTCA
265875 CCCATCTCCGACGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
265897 CCCATCTCCGACGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
265919 TATCTCCATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.45, G:0.14, T:0.18
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:266235 original size:20 final size:20
Alignment explanation
Indices: 266181--266239 Score: 82
Period size: 20 Copynumber: 3.0 Consensus size: 20
266171 GCGATTCTCT
**
266181 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCATTTTCG
266201 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
**
266221 CGTTGCGATTTTCATTTTC
1 CGTTGCGATAGTCATTTTC
266240 AGAAACTATT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.17, C:0.20, G:0.22, T:0.41
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTTCG
Found at i:266430 original size:25 final size:24
Alignment explanation
Indices: 266376--266430 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
266366 TGTTTATTAT
* *
266376 TGTTTTTGGTATATCTTCACAGTG
1 TGTTTTTGGTATATCTTAACAGTA
266400 TAGTTTTTGGTATATC-TAACTTAGTA
1 T-GTTTTTGGTATATCTTAAC--AGTA
266426 TGTTT
1 TGTTT
266431 ATTGTTTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 4 0.15
25 18 0.69
26 4 0.15
ACGTcount: A:0.20, C:0.09, G:0.18, T:0.53
Consensus pattern (24 bp):
TGTTTTTGGTATATCTTAACAGTA
Found at i:267580 original size:18 final size:18
Alignment explanation
Indices: 267559--267603 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
267549 TCCACTTCGG
*
267559 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCACCCA
*
267577 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
267595 GAGCCATCA
1 GAGCCATCA
267604 TCTGATCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.27, C:0.44, G:0.16, T:0.13
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:267814 original size:21 final size:21
Alignment explanation
Indices: 267769--267815 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
267759 GTTAGGGGAG
* *
267769 TTACGTGATGAGGTCAATGCC
1 TTACGTGAGGAGGTCAATACC
* *
267790 TTACGTGAGGAGGTCGATACT
1 TTACGTGAGGAGGTCAATACC
267811 TTACG
1 TTACG
267816 CAAAGACGAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (21 bp):
TTACGTGAGGAGGTCAATACC
Found at i:268135 original size:20 final size:20
Alignment explanation
Indices: 268085--268137 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
268075 TAGTTTACTT
*
268085 TCGCAACACGAAAATGACTA
1 TCGCAACGCGAAAATGACTA
*
268105 TCGCAACGCGAAAATGGCTA
1 TCGCAACGCGAAAATGACTA
*
268125 TCGCAATGCGAAA
1 TCGCAACGCGAAA
268138 TGAAAATCGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.40, C:0.25, G:0.21, T:0.15
Consensus pattern (20 bp):
TCGCAACGCGAAAATGACTA
Found at i:268159 original size:14 final size:14
Alignment explanation
Indices: 268140--268197 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
268130 ATGCGAAATG
*
268140 AAAATCGTAACGAC
1 AAAATCGCAACGAC
*
268154 AAAATCGCAATGCGAA
1 AAAATCGCAA--CGAC
268170 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
268186 AAAATCGCAACG
1 AAAATCGCAACG
268198 CGAAACACAA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
14 20 0.54
16 8 0.22
18 9 0.24
ACGTcount: A:0.48, C:0.22, G:0.17, T:0.12
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:268184 original size:32 final size:33
Alignment explanation
Indices: 268124--268202 Score: 133
Period size: 32 Copynumber: 2.4 Consensus size: 33
268114 GAAAATGGCT
*
268124 ATCGCAATGCGAAATGAAAATCGTAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
268157 ATCGCAATGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
*
268189 ATCGCAACGCGAAA
1 ATCGCAATGCGAAA
268203 CACAAATCGC
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
32 28 0.64
33 16 0.36
ACGTcount: A:0.47, C:0.22, G:0.19, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Found at i:268231 original size:19 final size:18
Alignment explanation
Indices: 268209--268337 Score: 111
Period size: 19 Copynumber: 7.7 Consensus size: 18
268199 GAAACACAAA
268209 TCGCATTGCGATTTTCATT
1 TCGCATTGCGA-TTTCATT
* *
268228 TCGCGTTGCGATTT--TG
1 TCGCATTGCGATTTCATT
268244 TCG--TTGCGATTTCATT
1 TCGCATTGCGATTTCATT
*
268260 TCGCATTGCGATTT--TG
1 TCGCATTGCGATTTCATT
268276 TCG--TTGCGATTTTCATT
1 TCGCATTGCGA-TTTCATT
*
268293 TCGCATTGCGATTT--TG
1 TCGCATTGCGATTTCATT
268309 TCG--TTGCGATTTTCATT
1 TCGCATTGCGA-TTTCATT
268326 TCGCATTGCGAT
1 TCGCATTGCGAT
268338 AGCCATTTTC
Statistics
Matches: 89, Mismatches: 7, Indels: 29
0.71 0.06 0.23
Matches are distributed among these distances:
14 21 0.24
15 6 0.07
16 16 0.18
17 8 0.09
18 16 0.18
19 22 0.25
ACGTcount: A:0.12, C:0.19, G:0.22, T:0.47
Consensus pattern (18 bp):
TCGCATTGCGATTTCATT
Found at i:268250 original size:14 final size:14
Alignment explanation
Indices: 268231--268321 Score: 83
Period size: 14 Copynumber: 5.9 Consensus size: 14
268221 TTTCATTTCG
268231 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
268245 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
268261 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
*
268277 CGTTGCGATTTTCATTT
1 CGTTGCGA-TTT--TGT
268294 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
268310 CGTTGCGATTTT
1 CGTTGCGATTTT
268322 CATTTCGCAT
Statistics
Matches: 64, Mismatches: 4, Indels: 18
0.74 0.05 0.21
Matches are distributed among these distances:
14 27 0.42
15 3 0.05
16 12 0.19
17 4 0.06
18 12 0.19
19 6 0.09
ACGTcount: A:0.11, C:0.18, G:0.23, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:268290 original size:65 final size:66
Alignment explanation
Indices: 268214--268337 Score: 232
Period size: 65 Copynumber: 1.9 Consensus size: 66
268204 ACAAATCGCA
*
268214 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCGTTGCGA-TTTCATTTCGCATTGCGATTTTGTC
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCGTTGCGATTTTCATTTCGCATTGCGATTTTGTC
268278 G
66 G
268279 TTGCGATTTTCATTTCGCATTGCGATTTTGTCGTTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCGTTGCGATTTTCATTTCGCATTGCGAT
268338 AGCCATTTTC
Statistics
Matches: 57, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
65 38 0.67
66 19 0.33
ACGTcount: A:0.12, C:0.19, G:0.22, T:0.48
Consensus pattern (66 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTGTCGTTGCGATTTTCATTTCGCATTGCGATTTTGTC
G
Found at i:268349 original size:20 final size:20
Alignment explanation
Indices: 268324--268377 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
268314 GCGATTTTCA
*
268324 TTTCGCATTGCGATAGCCAT
1 TTTCGCGTTGCGATAGCCAT
*
268344 TTTCGCGTTGCGATAGTCAT
1 TTTCGCGTTGCGATAGCCAT
*
268364 TTTTGCGTTGCGAT
1 TTTCGCGTTGCGAT
268378 TTTAAGTTTC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.15, C:0.20, G:0.24, T:0.41
Consensus pattern (20 bp):
TTTCGCGTTGCGATAGCCAT
Found at i:268357 original size:39 final size:33
Alignment explanation
Indices: 268214--268337 Score: 232
Period size: 33 Copynumber: 3.8 Consensus size: 33
268204 ACAAATCGCA
*
268214 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
268247 TTGCGA-TTTCATTTCGCATTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
268279 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
268312 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGAT
268338 AGCCATTTTC
Statistics
Matches: 89, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
32 31 0.35
33 58 0.65
ACGTcount: A:0.12, C:0.19, G:0.22, T:0.48
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
Found at i:268838 original size:41 final size:41
Alignment explanation
Indices: 268742--268829 Score: 122
Period size: 41 Copynumber: 2.1 Consensus size: 41
268732 GACTCACCTG
* * *
268742 TCATCCCTCAAGAGTCCCCTCCAATCGTTCAAGAGGCCCCTA
1 TCATCCCTCAAGAGTCCCC-CCCACCGTTCAAGAGGCCACTA
* *
268784 TCCTCCCTCAAGAGTCCCCCCCACCGTTCAAGAGGCCACTG
1 TCATCCCTCAAGAGTCCCCCCCACCGTTCAAGAGGCCACTA
268825 TCATC
1 TCATC
268830 GTTGAAGAGG
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
41 22 0.55
42 18 0.45
ACGTcount: A:0.22, C:0.43, G:0.15, T:0.20
Consensus pattern (41 bp):
TCATCCCTCAAGAGTCCCCCCCACCGTTCAAGAGGCCACTA
Found at i:270264 original size:14 final size:14
Alignment explanation
Indices: 270245--270280 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
270235 ATTGTTTAAT
270245 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
270259 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
270273 TGATTTGT
1 TGATTTGT
270281 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:270408 original size:20 final size:20
Alignment explanation
Indices: 270383--270420 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
270373 AGGCAAAACA
*
270383 GACTATCGCAACACGAAATT
1 GACTATCGCAACAAGAAATT
270403 GACTATCGCAACAAGAAA
1 GACTATCGCAACAAGAAA
270421 ATCACAATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.24, G:0.16, T:0.16
Consensus pattern (20 bp):
GACTATCGCAACAAGAAATT
Found at i:270509 original size:20 final size:20
Alignment explanation
Indices: 270492--270539 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
270482 CGATTTTCTA
270492 GTTGCGATAGCCATTTTCGC
1 GTTGCGATAGCCATTTTCGC
270512 GTTGCGATAGCCATTTTCGC
1 GTTGCGATAGCCATTTTCGC
270532 GTTGCGAT
1 GTTGCGAT
270540 TTCCCCGTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.15, C:0.23, G:0.27, T:0.35
Consensus pattern (20 bp):
GTTGCGATAGCCATTTTCGC
Found at i:270778 original size:20 final size:20
Alignment explanation
Indices: 270753--270802 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
270743 TTGAAGATGA
270753 TTGCGATTTTCAGAATATCG
1 TTGCGATTTTCAGAATATCG
*** *
270773 TTGCGAAAGTCAGAATCTCG
1 TTGCGATTTTCAGAATATCG
270793 TTGCGATTTT
1 TTGCGATTTT
270803 GTATTATCTC
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.38
Consensus pattern (20 bp):
TTGCGATTTTCAGAATATCG
Found at i:270877 original size:20 final size:21
Alignment explanation
Indices: 270829--270880 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
270819 ATAGTCAGTA
*
270829 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTACAAAT
* **
270850 TTGCATTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTACAAAT
270870 TCGCATTGCGA
1 TCGCATTGCGA
270881 ATTAGGAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.40
Consensus pattern (21 bp):
TCGCATTGCGATTTTACAAAT
Found at i:271680 original size:24 final size:24
Alignment explanation
Indices: 271653--271699 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
271643 GTATTCAAAA
*
271653 TTTGATCCTGGTCAATACCCGGAC
1 TTTGATACTGGTCAATACCCGGAC
* *
271677 TTTGATATTGGTCAATACTCGGA
1 TTTGATACTGGTCAATACCCGGA
271700 TTTCGATGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.34
Consensus pattern (24 bp):
TTTGATACTGGTCAATACCCGGAC
Found at i:271898 original size:12 final size:12
Alignment explanation
Indices: 271881--271917 Score: 74
Period size: 12 Copynumber: 3.1 Consensus size: 12
271871 ATATAATCCT
271881 GAAGAAGAAAAA
1 GAAGAAGAAAAA
271893 GAAGAAGAAAAA
1 GAAGAAGAAAAA
271905 GAAGAAGAAAAA
1 GAAGAAGAAAAA
271917 G
1 G
271918 TCCCCGAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:274230 original size:19 final size:19
Alignment explanation
Indices: 274208--274338 Score: 94
Period size: 19 Copynumber: 7.7 Consensus size: 19
274198 GGAAATTACT
274208 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
274227 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
274241 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
* *
274260 ATCGCAA--CG--CT-AAT
1 ATCGCAATGCGAAATGAAA
*
274274 TTCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
**
274293 ATCGCAA--CG--A-GGGA
1 ATCGCAATGCGAAATGAAA
274307 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
274326 ATCGCAACGCGAA
1 ATCGCAATGCGAA
274339 TTTAATTTCG
Statistics
Matches: 84, Mismatches: 13, Indels: 30
0.66 0.10 0.24
Matches are distributed among these distances:
14 27 0.32
15 3 0.04
16 6 0.07
17 6 0.07
18 3 0.04
19 39 0.46
ACGTcount: A:0.43, C:0.20, G:0.23, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:274250 original size:33 final size:33
Alignment explanation
Indices: 274208--274334 Score: 202
Period size: 33 Copynumber: 3.8 Consensus size: 33
274198 GGAAATTACT
274208 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
**
274241 ATCGCAATGCGAAATGAAAATCGCAACGCTA-A
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* *
274273 TTTCGCAATGCGAAATGAAAATCGCAACGAGGGA
1 -ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
274307 ATCGCAATGCGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
274335 CGAATTTAAT
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
32 1 0.01
33 83 0.98
34 1 0.01
ACGTcount: A:0.43, C:0.20, G:0.23, T:0.15
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:274315 original size:66 final size:66
Alignment explanation
Indices: 274209--274341 Score: 248
Period size: 66 Copynumber: 2.0 Consensus size: 66
274199 GAAATTACTA
*
274209 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCTAAT
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
274274 T
66 T
*
274275 TCGCAATGCGAAATGAAAATCGCAACGAGGGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
274340 T
66 T
274341 T
1 T
274342 AATTTCGCGT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.41, C:0.20, G:0.23, T:0.17
Consensus pattern (66 bp):
TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
T
Found at i:274356 original size:19 final size:19
Alignment explanation
Indices: 274334--274408 Score: 70
Period size: 19 Copynumber: 4.2 Consensus size: 19
274324 AAATCGCAAC
*
274334 GCGAATTTAATTTCGCGTT
1 GCGAATTTCATTTCGCGTT
*
274353 GCG-A-TTC---TCTCGTT
1 GCGAATTTCATTTCGCGTT
*
274367 GCGATTTTCATTTCGCGTT
1 GCGAATTTCATTTCGCGTT
* *
274386 GCGATTTTCATTTCGCATT
1 GCGAATTTCATTTCGCGTT
274405 GCGA
1 GCGA
274409 TAGTACTTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
14 9 0.20
16 3 0.07
17 2 0.04
18 1 0.02
19 31 0.67
ACGTcount: A:0.15, C:0.21, G:0.21, T:0.43
Consensus pattern (19 bp):
GCGAATTTCATTTCGCGTT
Found at i:274409 original size:19 final size:19
Alignment explanation
Indices: 274365--274409 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
274355 GATTCTCTCG
*
274365 TTGCGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCGCA
274384 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
274403 TTGCGAT
1 TTGCGAT
274410 AGTACTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.13, C:0.20, G:0.20, T:0.47
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:274535 original size:14 final size:14
Alignment explanation
Indices: 274516--274552 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
274506 CATCAATTAA
274516 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
274530 ACAAATCACCTTTT
1 ACAAATCAACTTTT
274544 ACAAATCAA
1 ACAAATCAA
274553 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:275953 original size:21 final size:21
Alignment explanation
Indices: 275929--276039 Score: 55
Period size: 21 Copynumber: 5.3 Consensus size: 21
275919 GTGGGAGGGA
275929 CCTCTTCAACGATGACAGTGG
1 CCTCTTCAACGATGACAGTGG
* * ** *
275950 CCTCTTGAACGGTGGGAGGGG
1 CCTCTTCAACGATGACAGTGG
* * * * *
275971 ACTC-TCGAGGAATGATAGGGG
1 CCTCTTCAACG-ATGACAGTGG
*
275992 CCTCTTCAACGAT-AGGAGTGG
1 CCTCTTCAACGATGA-CAGTGG
* * **
276013 ACTCTTGAGGGATGACAGTGG
1 CCTCTTCAACGATGACAGTGG
276034 CCTCTT
1 CCTCTT
276040 GAATGGTGGG
Statistics
Matches: 63, Mismatches: 23, Indels: 8
0.67 0.24 0.09
Matches are distributed among these distances:
20 4 0.06
21 54 0.86
22 5 0.08
ACGTcount: A:0.22, C:0.22, G:0.33, T:0.23
Consensus pattern (21 bp):
CCTCTTCAACGATGACAGTGG
Found at i:275968 original size:42 final size:41
Alignment explanation
Indices: 275909--276114 Score: 164
Period size: 42 Copynumber: 4.9 Consensus size: 41
275899 GTGAATCGGG
* *
275909 CTCTTGAATGGTGGGAGGGACCTCTTCAACGATGACAGTGGC
1 CTCTTGAACGGTGGGAGGGA-CTCTTCAAGGATGACAGTGGC
* * *
275951 CTCTTGAACGGTGGGAGGGGACTC-TCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGA-GGGACTCTTCAAGG-ATGACAGTGGC
* * * * *
275993 CTCTTCAACGATAGGAGTGGACTCTTGAGGGATGACAGTGGC
1 CTCTTGAACGGTGGGAG-GGACTCTTCAAGGATGACAGTGGC
* * * *
276035 CTCTTGAATGGTGGGAGGGGACTC-TCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGA-GGGACTCTTCAAGG-ATGACAGTGGC
* * * * *
276077 CTCTTCAACGATAGGAGTGGACTCTTGAGGGATGACAG
1 CTCTTGAACGGTGGGAG-GGACTCTTCAAGGATGACAG
276115 GCGAGTCGGG
Statistics
Matches: 126, Mismatches: 30, Indels: 16
0.73 0.17 0.09
Matches are distributed among these distances:
41 9 0.07
42 106 0.84
43 11 0.09
ACGTcount: A:0.23, C:0.18, G:0.37, T:0.22
Consensus pattern (41 bp):
CTCTTGAACGGTGGGAGGGACTCTTCAAGGATGACAGTGGC
Found at i:276050 original size:84 final size:84
Alignment explanation
Indices: 275939--276114 Score: 343
Period size: 84 Copynumber: 2.1 Consensus size: 84
275929 CCTCTTCAAC
275939 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGA
1 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGA
276004 TAGGAGTGGACTCTTGAGG
66 TAGGAGTGGACTCTTGAGG
*
276023 GATGACAGTGGCCTCTTGAATGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGA
1 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGA
276088 TAGGAGTGGACTCTTGAGG
66 TAGGAGTGGACTCTTGAGG
276107 GATGACAG
1 GATGACAG
276115 GCGAGTCGGG
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
84 91 1.00
ACGTcount: A:0.23, C:0.17, G:0.38, T:0.22
Consensus pattern (84 bp):
GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGA
TAGGAGTGGACTCTTGAGG
Found at i:276510 original size:91 final size:90
Alignment explanation
Indices: 276333--276517 Score: 293
Period size: 91 Copynumber: 2.0 Consensus size: 90
276323 ATTTCAAACT
276333 TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGTTTAGC
1 TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAAT--A-AGTTTAGC
276398 AGAATTGGCAGCAACCGAATAAATTTAC
63 AGAATTGGCAGCAACCGAATAAATTTAC
276426 TTCAACCAAAAGACAAAACAAAAAGACAAATACTAACTTCACAGTGTTAATA-AAT-AGTTTAGC
1 TTCAACCAAAAGACAAAAC--AAAGACAAATACTAACTTCACAGTGTTAA-AGAATAAGTTTAGC
*
276489 AGTATTGGCAGCAACCGAATAAATTTAC
63 AGAATTGGCAGCAACCGAATAAATTTAC
276517 T
1 T
276518 AAGCAATCTA
Statistics
Matches: 88, Mismatches: 1, Indels: 8
0.91 0.01 0.08
Matches are distributed among these distances:
91 36 0.41
93 19 0.22
95 32 0.36
96 1 0.01
ACGTcount: A:0.47, C:0.18, G:0.12, T:0.22
Consensus pattern (90 bp):
TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATAAGTTTAGCAGA
ATTGGCAGCAACCGAATAAATTTAC
Found at i:278235 original size:20 final size:20
Alignment explanation
Indices: 278206--278244 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
278196 TTTTGGTTGA
278206 AATGAAAATCACAACGAGAT
1 AATGAAAATCACAACGAGAT
* *
278226 AATGAGAATCGCAACGAGA
1 AATGAAAATCACAACGAGA
278245 GAATCGCAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.15, G:0.21, T:0.13
Consensus pattern (20 bp):
AATGAAAATCACAACGAGAT
Found at i:278248 original size:14 final size:14
Alignment explanation
Indices: 278229--278255 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
278219 ACGAGATAAT
278229 GAGAATCGCAACGA
1 GAGAATCGCAACGA
278243 GAGAATCGCAACG
1 GAGAATCGCAACG
278256 CGAAATGACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.22, G:0.30, T:0.07
Consensus pattern (14 bp):
GAGAATCGCAACGA
Found at i:278263 original size:33 final size:33
Alignment explanation
Indices: 278212--278307 Score: 120
Period size: 33 Copynumber: 2.9 Consensus size: 33
278202 TTGAAATGAA
* * *
278212 AATCACAACGAGATAATGAGAATCGCAACGAGAG
1 AATCGCAACGCGA-AATGAAAATCGCAACGAGAG
** * *
278246 AATCGCAACGCGAAATGACTATTGCGACGAGAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAGAG
278279 AATCGCAACGCGAAATGAAAATCGCAACG
1 AATCGCAACGCGAAATGAAAATCGCAACG
278308 CGAAATGAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
33 41 0.79
34 11 0.21
ACGTcount: A:0.43, C:0.21, G:0.24, T:0.12
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAGAG
Found at i:278301 original size:19 final size:19
Alignment explanation
Indices: 278279--278329 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
278269 GCGACGAGAG
278279 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
278298 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
278317 AATCGCAATGCGA
1 AATCGCAACGCGA
278330 TTTTGGTTTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.45, C:0.22, G:0.22, T:0.12
Consensus pattern (19 bp):
AATCGCAACGCGAAATGAA
Found at i:278352 original size:19 final size:19
Alignment explanation
Indices: 278325--278390 Score: 80
Period size: 18 Copynumber: 3.5 Consensus size: 19
278315 AAAATCGCAA
**
278325 TGCGATTTTGGTTTCGCG-
1 TGCGATTTTTATTTCGCGT
278343 TGCGATTTTTATTTCGCGT
1 TGCGATTTTTATTTCGCGT
**
278362 TGCGATAGTTATTTCCGCGT
1 TGCGATTTTTATTT-CGCGT
278382 TGCGATTTT
1 TGCGATTTT
278391 CATTCTCGAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
18 16 0.40
19 12 0.30
20 12 0.30
ACGTcount: A:0.11, C:0.17, G:0.26, T:0.47
Consensus pattern (19 bp):
TGCGATTTTTATTTCGCGT
Found at i:278382 original size:20 final size:19
Alignment explanation
Indices: 278336--278387 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
278326 GCGATTTTGG
**
278336 TTTCGCG-TGCGATTTTTA
1 TTTCGCGTTGCGATAGTTA
278354 TTTCGCGTTGCGATAGTTA
1 TTTCGCGTTGCGATAGTTA
278373 TTTCCGCGTTGCGAT
1 TTT-CGCGTTGCGAT
278388 TTTCATTCTC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 7 0.23
19 12 0.40
20 11 0.37
ACGTcount: A:0.12, C:0.19, G:0.25, T:0.44
Consensus pattern (19 bp):
TTTCGCGTTGCGATAGTTA
Found at i:278956 original size:21 final size:21
Alignment explanation
Indices: 278932--279001 Score: 140
Period size: 21 Copynumber: 3.3 Consensus size: 21
278922 CAGTATCTCG
278932 TTGCGATTTTGTATTATCGCA
1 TTGCGATTTTGTATTATCGCA
278953 TTGCGATTTTGTATTATCGCA
1 TTGCGATTTTGTATTATCGCA
278974 TTGCGATTTTGTATTATCGCA
1 TTGCGATTTTGTATTATCGCA
278995 TTGCGAT
1 TTGCGAT
279002 AGTCAGTATC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 49 1.00
ACGTcount: A:0.19, C:0.14, G:0.20, T:0.47
Consensus pattern (21 bp):
TTGCGATTTTGTATTATCGCA
Found at i:279132 original size:21 final size:21
Alignment explanation
Indices: 279092--279132 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
279082 ACTGTAGACA
**
279092 ATCGCAACGCGATTTCCAACT
1 ATCGCAACGCGAAATCCAACT
*
279113 ATCGCAACGCGAAATGCAAC
1 ATCGCAACGCGAAATCCAAC
279133 GCGAATTTGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.32, G:0.17, T:0.17
Consensus pattern (21 bp):
ATCGCAACGCGAAATCCAACT
Found at i:279838 original size:21 final size:21
Alignment explanation
Indices: 279721--279858 Score: 68
Period size: 21 Copynumber: 6.7 Consensus size: 21
279711 ACGCGAAATA
**
279721 AAAATCGCAACGCGA-TCCCC
1 AAAATCGCAACGCGATTTTCC
* ** *
279741 AGAATCGCAAATC-AGTTTCC
1 AAAATCGCAACGCGATTTTCC
* *
279761 AAAATCGCAACGTGATTCTT-G
1 AAAATCGCAACGCGATT-TTCC
* ** *
279782 AAAATCGCAATGCGATAGTAC
1 AAAATCGCAACGCGATTTTCC
* * **
279803 AAATTCACATTGCGATTTTCC
1 AAAATCGCAACGCGATTTTCC
* * *
279824 AAAATCGCAACGCGAATAT-G
1 AAAATCGCAACGCGATTTTCC
279844 AAAATCGCAACGCGA
1 AAAATCGCAACGCGA
279859 ACACATAAAT
Statistics
Matches: 85, Mismatches: 29, Indels: 8
0.70 0.24 0.07
Matches are distributed among these distances:
19 1 0.01
20 38 0.45
21 44 0.52
22 2 0.02
ACGTcount: A:0.38, C:0.25, G:0.17, T:0.21
Consensus pattern (21 bp):
AAAATCGCAACGCGATTTTCC
Found at i:279849 original size:20 final size:20
Alignment explanation
Indices: 279825--280074 Score: 261
Period size: 20 Copynumber: 12.5 Consensus size: 20
279815 CGATTTTCCA
** *
279825 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGAATCCGT
*
279845 AAATCGCAACGCGAA-CACAT
1 AAATCGCAACGCGAATC-CGT
*
279865 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGAATCCGT
*
279885 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGAATCCGT
**
279905 AAATCGCAACGC-ATATGGGT
1 AAATCGCAACGCGA-ATCCGT
* *
279925 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGAATCCGT
* *
279945 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGAATCCGT
* *
279965 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGAATCCGT
**
279985 AAATCGCAACGATAATCCGT
1 AAATCGCAACGCGAATCCGT
* *
280005 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGAATCCGT
**
280025 AAATCGCAACGATAATCCGT
1 AAATCGCAACGCGAATCCGT
* *
280045 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGAATCCGT
*
280065 AAATCACAAC
1 AAATCGCAAC
280075 ACTGAAATTT
Statistics
Matches: 198, Mismatches: 28, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
20 197 0.99
21 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.18, T:0.19
Consensus pattern (20 bp):
AAATCGCAACGCGAATCCGT
Found at i:280797 original size:24 final size:24
Alignment explanation
Indices: 280758--280804 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
280748 AAATTTGGTC
280758 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
280782 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
280805 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:280996 original size:12 final size:12
Alignment explanation
Indices: 280979--281003 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
280969 ATATAATCCT
280979 GAAGAAGAAAAA
1 GAAGAAGAAAAA
280991 GAAGAAGAAAAA
1 GAAGAAGAAAAA
281003 G
1 G
281004 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:283376 original size:19 final size:19
Alignment explanation
Indices: 283336--283433 Score: 143
Period size: 19 Copynumber: 5.4 Consensus size: 19
283326 GATTCTCTCG
283336 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
283356 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
283375 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
283389 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
283408 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
283427 TTGCGAT
1 TTGCGAT
283434 AGTCAATTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
14 6 0.08
16 7 0.10
17 7 0.10
19 36 0.51
20 15 0.21
ACGTcount: A:0.14, C:0.22, G:0.17, T:0.46
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:283430 original size:52 final size:53
Alignment explanation
Indices: 283317--283433 Score: 227
Period size: 53 Copynumber: 2.2 Consensus size: 53
283307 GAAATGAAAA
283317 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
283370 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTT-CGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
283422 TCGCATTGCGAT
1 TCGCATTGCGAT
283434 AGTCAATTTT
Statistics
Matches: 64, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 30 0.47
53 34 0.53
ACGTcount: A:0.14, C:0.24, G:0.18, T:0.44
Consensus pattern (53 bp):
TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
Found at i:283529 original size:14 final size:14
Alignment explanation
Indices: 283510--283564 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
283500 CGGAAATGAA
283510 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
283524 AATCGCAATGCGAAATGAA
1 AATCGCAA--CG--A-GAG
283543 AATCGCAACGAGAG
1 AATCGCAACGAGAG
283557 AATCGCAA
1 AATCGCAA
283565 TGCGAAATGA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.29
ACGTcount: A:0.45, C:0.20, G:0.24, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:283544 original size:33 final size:33
Alignment explanation
Indices: 283495--283583 Score: 169
Period size: 33 Copynumber: 2.7 Consensus size: 33
283485 TTACATTTCA
283495 CAATGCGGAAATGAAAATCGCAACGAGAGAATCG
1 CAATGC-GAAATGAAAATCGCAACGAGAGAATCG
283529 CAATGCGAAATGAAAATCGCAACGAGAGAATCG
1 CAATGCGAAATGAAAATCGCAACGAGAGAATCG
283562 CAATGCGAAATGAAAATCGCAA
1 CAATGCGAAATGAAAATCGCAA
283584 TGCGAAATGA
Statistics
Matches: 55, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
33 49 0.89
34 6 0.11
ACGTcount: A:0.46, C:0.18, G:0.24, T:0.12
Consensus pattern (33 bp):
CAATGCGAAATGAAAATCGCAACGAGAGAATCG
Found at i:283583 original size:52 final size:52
Alignment explanation
Indices: 283524--283640 Score: 207
Period size: 52 Copynumber: 2.2 Consensus size: 52
283514 GCAACGAGAG
283524 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAA
* *
283576 AATCGCAATGCGAAATGAAAATCGCAACGAGATAATCGCAATGCGAAATTAA
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAA
*
283628 AATCGCATTGCGA
1 AATCGCAATGCGA
283641 TTCTCCCATT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 62 1.00
ACGTcount: A:0.44, C:0.18, G:0.21, T:0.16
Consensus pattern (52 bp):
AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAA
Found at i:283689 original size:19 final size:19
Alignment explanation
Indices: 283647--283746 Score: 147
Period size: 19 Copynumber: 5.5 Consensus size: 19
283637 GCGATTCTCC
283647 CATTGCGATTTTCATTTCCG
1 CATTGCGATTTTCATTT-CG
283667 CATTGCGATTTTCATTTCG
1 CATTGCGATTTTCATTTCG
*
283686 CATTGCGA--TTC-TCTCG
1 CATTGCGATTTTCATTTCG
283702 --TTGCGATTTTCATTTCG
1 CATTGCGATTTTCATTTCG
283719 CATTGCGATTTTCATTTCG
1 CATTGCGATTTTCATTTCG
283738 CATTGCGAT
1 CATTGCGAT
283747 AGTCAATTTT
Statistics
Matches: 73, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
14 6 0.08
16 7 0.10
17 7 0.10
19 36 0.49
20 17 0.23
ACGTcount: A:0.15, C:0.23, G:0.17, T:0.45
Consensus pattern (19 bp):
CATTGCGATTTTCATTTCG
Found at i:283743 original size:52 final size:53
Alignment explanation
Indices: 283630--283746 Score: 209
Period size: 53 Copynumber: 2.2 Consensus size: 53
283620 GAAATTAAAA
283630 TCGCATTGCGATTCTCCCATTGCGATTTTCATTTCCGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCCCATTGCGATTTTCATTTCCGCATTGCGATTTTCATT
* *
283683 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTT-CGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCCCATTGCGATTTTCATTTCCGCATTGCGATTTTCATT
283735 TCGCATTGCGAT
1 TCGCATTGCGAT
283747 AGTCAATTTT
Statistics
Matches: 62, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
52 30 0.48
53 32 0.52
ACGTcount: A:0.15, C:0.25, G:0.17, T:0.44
Consensus pattern (53 bp):
TCGCATTGCGATTCTCCCATTGCGATTTTCATTTCCGCATTGCGATTTTCATT
Found at i:283872 original size:14 final size:14
Alignment explanation
Indices: 283853--283889 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
283843 CATCAATTAC
283853 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
283867 ACAAATCATCTTTT
1 ACAAATCAACTTTT
283881 ACAAATCAA
1 ACAAATCAA
283890 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:285855 original size:19 final size:19
Alignment explanation
Indices: 285815--285949 Score: 137
Period size: 19 Copynumber: 7.6 Consensus size: 19
285805 TAGTTTACTT
* *
285815 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
285835 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
285854 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
285873 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
285887 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
285906 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
285920 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
285939 TCGCAATGCGA
1 TCGCAACGCGA
285950 TTTTGGTTTC
Statistics
Matches: 97, Mismatches: 8, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
14 16 0.16
16 11 0.11
17 11 0.11
19 47 0.48
20 12 0.12
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.10
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:285890 original size:14 final size:14
Alignment explanation
Indices: 285871--285927 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
285861 GCGAAATGAA
*
285871 AATCGCAACGACAG
1 AATCGCAACGAAAG
285885 AATCGCAACGCGAAATG
1 AATCGCAA--CGAAA-G
285902 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
285918 AATCGCAACG
1 AATCGCAACG
285928 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.25, G:0.21, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:285894 original size:33 final size:33
Alignment explanation
Indices: 285852--285944 Score: 177
Period size: 33 Copynumber: 2.8 Consensus size: 33
285842 GCGAAACCAA
*
285852 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
285885 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
285918 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
285945 TGCGATTTTG
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 59 1.00
ACGTcount: A:0.47, C:0.23, G:0.20, T:0.10
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:285941 original size:52 final size:54
Alignment explanation
Indices: 285815--285949 Score: 131
Period size: 52 Copynumber: 2.5 Consensus size: 54
285805 TAGTTTACTT
*
285815 TCGCAACACGAAACTTAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAATGAAAA
1 TCGCAAC-CGAAA-TGAAAATCGCAACGCGAAACCAAAATCGCAAC-CGAAATG-AAA
* **
285873 TCGCAA-CGACA-G--AATCGCAACGCGAAATGAAAATCGCAA-CGAAA-G-AA
1 TCGCAACCGAAATGAAAATCGCAACGCGAAACCAAAATCGCAACCGAAATGAAA
*
285920 TCGCAACGCGAAATGAAAATCGCAATGCGA
1 TCGCAAC-CGAAATGAAAATCGCAACGCGA
285950 TTTTGGTTTC
Statistics
Matches: 66, Mismatches: 6, Indels: 16
0.75 0.07 0.18
Matches are distributed among these distances:
47 8 0.12
49 5 0.08
50 6 0.09
52 37 0.56
56 4 0.06
58 6 0.09
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.10
Consensus pattern (54 bp):
TCGCAACCGAAATGAAAATCGCAACGCGAAACCAAAATCGCAACCGAAATGAAA
Found at i:285967 original size:19 final size:19
Alignment explanation
Indices: 285945--286073 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
285935 AAAATCGCAA
285945 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
285964 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
285978 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
285997 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
286011 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
286030 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
286049 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
286069 TGCGA
1 TGCGA
286074 AAGTAAACTA
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 22 0.24
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 48 0.53
20 13 0.14
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:285987 original size:33 final size:33
Alignment explanation
Indices: 285945--286036 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
285935 AAAATCGCAA
285945 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
285978 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
286011 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
286037 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 54 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.18, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:286276 original size:93 final size:93
Alignment explanation
Indices: 286117--286590 Score: 921
Period size: 93 Copynumber: 5.1 Consensus size: 93
286107 TTGAATGGAT
286117 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
286182 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
*
286210 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTATAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
286275 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
286303 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
286368 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
*
286396 AAATTTACTTTCAACTAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
286461 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
286489 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
*
286554 AGTTTAGCAGAATTGGCAGCAACCGAAT
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
286582 AAATTTACT
1 AAATTTACT
286591 AAGCAATCTA
Statistics
Matches: 376, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 376 1.00
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.23
Consensus pattern (93 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:288312 original size:14 final size:14
Alignment explanation
Indices: 288293--288382 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
288283 TTGAAATGAA
288293 AATCGCAACGAGAG
1 AATCGCAACGAGAG
288307 AATCGCAACGCGAGATG
1 AATCGCAA--CGAGA-G
288324 ACAATCGCAACGAGAG
1 --AATCGCAACGAGAG
*
288340 AATCGCAACGCGAAATGAC
1 AATCGCAA--CG--A-GAG
288359 AATCGCAACGAGAG
1 AATCGCAACGAGAG
288373 AATCGCAACG
1 AATCGCAACG
288383 CGAAATGAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.41, C:0.24, G:0.26, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:288330 original size:33 final size:33
Alignment explanation
Indices: 288285--288399 Score: 203
Period size: 33 Copynumber: 3.5 Consensus size: 33
288275 TCTTTTGGTT
288285 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
288318 GAGATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
*
288351 GAAATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
288384 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
288400 TGCGATTTTG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.44, C:0.22, G:0.24, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:288331 original size:19 final size:18
Alignment explanation
Indices: 288292--288404 Score: 88
Period size: 19 Copynumber: 6.8 Consensus size: 18
288282 GTTGAAATGA
288292 AAATCGCAA--CGAGA-G
1 AAATCGCAACGCGAGATG
288307 -AATCGCAACGCGAGATG
1 AAATCGCAACGCGAGATG
288324 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
288340 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
288357 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
288373 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
*
288390 AAAATCGCAATGCGA
1 -AAATCGCAACGCGA
288405 TTTTGGTTTC
Statistics
Matches: 79, Mismatches: 4, Indels: 26
0.72 0.04 0.24
Matches are distributed among these distances:
14 24 0.30
16 15 0.19
17 12 0.15
19 28 0.35
ACGTcount: A:0.42, C:0.23, G:0.25, T:0.10
Consensus pattern (18 bp):
AAATCGCAACGCGAGATG
Found at i:288435 original size:14 final size:14
Alignment explanation
Indices: 288416--288469 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 14
288406 TTTGGTTTCG
288416 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
288430 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
288449 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
288463 CGTTGCG
1 CGTTGCG
288470 CTTTTCATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 17 0.52
16 3 0.09
17 3 0.09
19 10 0.30
ACGTcount: A:0.07, C:0.26, G:0.24, T:0.43
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:288448 original size:33 final size:33
Alignment explanation
Indices: 288400--288480 Score: 135
Period size: 33 Copynumber: 2.5 Consensus size: 33
288390 AAAATCGCAA
**
288400 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
288433 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
*
288466 TGCGCTTTTCATTTC
1 TGCGATTTTCATTTC
288481 TCTCGTTGCG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.07, C:0.23, G:0.22, T:0.47
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:288516 original size:41 final size:41
Alignment explanation
Indices: 288456--288533 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 41
288446 TCGCGTTGCG
* *
288456 ATTCTCTCGTTGCGCTTTTCATTTCTCTCGTTGCGACAGTC
1 ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGACAGTC
288497 ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGAC
1 ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGAC
288534 TCTTCTGCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.12, C:0.27, G:0.17, T:0.45
Consensus pattern (41 bp):
ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGACAGTC
Found at i:288532 original size:21 final size:21
Alignment explanation
Indices: 288457--288532 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
288447 CGCGTTGCGA
*
288457 TTCTCTCGTTGCGCTTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
***
288478 TTCTCTCGTTGCGACAGTCA-
1 TTCTCTCGTTGCGATTTTCAT
288498 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
*
288519 TTATCTCGTTGCGA
1 TTCTCTCGTTGCGA
288533 CTCTTCTGCA
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 17 0.37
21 29 0.63
ACGTcount: A:0.11, C:0.26, G:0.17, T:0.46
Consensus pattern (21 bp):
TTCTCTCGTTGCGATTTTCAT
Found at i:288659 original size:33 final size:33
Alignment explanation
Indices: 288612--288682 Score: 106
Period size: 33 Copynumber: 2.2 Consensus size: 33
288602 AATACTAACT
* *
288612 TGAAAATCGGAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
288645 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
288678 TGAAA
1 TGAAA
288683 TCTAAGTGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.48, C:0.17, G:0.24, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:288889 original size:22 final size:22
Alignment explanation
Indices: 288837--288891 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
288827 ATATTGTGAG
**
288837 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
288859 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
288881 GGATTTCTTCG
1 GGATTTCTTCG
288892 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:289057 original size:39 final size:40
Alignment explanation
Indices: 289014--289095 Score: 96
Period size: 40 Copynumber: 2.1 Consensus size: 40
289004 TACGCGTAGC
*
289014 GATTATAATGGCGCTTTA-A-ATATCGCGTTGCGATTTACG
1 GATTATAATGGCGATTTACAGAT-TCGCGTTGCGATTTACG
** * *
289053 GATTATCGTTGCGATTTACAGATTCTCGTTGCGATTTACG
1 GATTATAATGGCGATTTACAGATTCGCGTTGCGATTTACG
289093 GAT
1 GAT
289096 ACGCGTTGCG
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
39 14 0.39
40 20 0.56
41 2 0.06
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.38
Consensus pattern (40 bp):
GATTATAATGGCGATTTACAGATTCGCGTTGCGATTTACG
Found at i:289230 original size:20 final size:20
Alignment explanation
Indices: 289037--289229 Score: 219
Period size: 20 Copynumber: 9.7 Consensus size: 20
289027 CTTTAAATAT
289037 CGCGTTGCGATTTACGGATTA
1 CGCGTTGCGATTTACGGA-TA
* * *
289058 -TCGTTGCGATTTACAGATT
1 CGCGTTGCGATTTACGGATA
*
289077 CTCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
289097 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
289117 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
289137 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
289157 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
289177 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
289197 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
289217 CGCGTTGCGATTT
1 CGCGTTGCGATTT
289230 TGGAAAATCG
Statistics
Matches: 147, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
19 1 0.01
20 145 0.99
21 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.25, T:0.35
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:289246 original size:21 final size:21
Alignment explanation
Indices: 289216--289298 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 21
289206 ATTTTCATAT
*
289216 TCGCGTTGCGATTTTGGAAAA
1 TCGCATTGCGATTTTGGAAAA
* * * **
289237 TCGCAATGCGAATTTGTACTA
1 TCGCATTGCGATTTTGGAAAA
*
289258 TCGCATTGCGATTTT-CAAGAA
1 TCGCATTGCGATTTTGGAA-AA
*
289279 TCGCGTTGCGATTTTGGAAA
1 TCGCATTGCGATTTTGGAAA
289299 CTGATTTGCG
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
20 1 0.02
21 44 0.94
22 2 0.04
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTTGGAAAA
Done.