Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008001.1 Hibiscus syriacus cultivar Beakdansim tig00110458_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3902382
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 11 of 18
Found at i:2106381 original size:18 final size:18
Alignment explanation
Indices: 2106358--2106394 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
2106348 CGAAATATAT
2106358 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
2106376 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
2106394 A
1 A
2106395 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:2106815 original size:25 final size:25
Alignment explanation
Indices: 2106781--2106830 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
2106771 ATTATTTTTC
*
2106781 CAAATAATGTACCCATAACAATGTT
1 CAAATAATGTACCCACAACAATGTT
2106806 CAAATAATGTACCCACAACAATGTT
1 CAAATAATGTACCCACAACAATGTT
2106831 TAATTGATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.44, C:0.22, G:0.08, T:0.26
Consensus pattern (25 bp):
CAAATAATGTACCCACAACAATGTT
Found at i:2107140 original size:23 final size:23
Alignment explanation
Indices: 2107114--2107176 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
2107104 ATATAACCAC
2107114 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
2107137 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
2107160 TACCTATTACATCATAT
1 TACCTATTACATTATAT
2107177 GTTTACTTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:2107555 original size:25 final size:25
Alignment explanation
Indices: 2107527--2107586 Score: 93
Period size: 25 Copynumber: 2.4 Consensus size: 25
2107517 AAAGATGTAT
2107527 ATACCTAAATATGTAGTTAACAAAC
1 ATACCTAAATATGTAGTTAACAAAC
** *
2107552 ATACCTAAATATGTAGTTATTATAC
1 ATACCTAAATATGTAGTTAACAAAC
2107577 ATACCTAAAT
1 ATACCTAAAT
2107587 TTAATGATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.45, C:0.15, G:0.07, T:0.33
Consensus pattern (25 bp):
ATACCTAAATATGTAGTTAACAAAC
Found at i:2110579 original size:183 final size:182
Alignment explanation
Indices: 2110054--2110545 Score: 869
Period size: 183 Copynumber: 2.7 Consensus size: 182
2110044 TTAAAATTAC
* *
2110054 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
* * *
2110119 ATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCAGTT
2110184 ATATTACAAAATTATCTATTACATTATAAATTTGGGTTCCGATGTGTAAATGT
131 ATATTACAAAATTATCTATTACATTAT-AATTTGGGTTCCGATGTGTAAATGT
2110237 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
* * *
2110302 ATTACAAAGTGTCGATATAGGTTGTAGACCTATTCGTGGATAAAACCGGTATATTTATACCAGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCAGTT
2110367 ATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
131 ATATTACAAAATTATCTATTACATTATAATT-TGGGTTCCGATGTGTAAATGT
*
2110420 CGACACTTTTTGACAAT-GTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAA
1 CGACACTTTTTTA-AATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAA
2110484 TATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACC
65 TATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACC
2110546 GATAGCATTG
Statistics
Matches: 296, Mismatches: 11, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
182 4 0.01
183 289 0.98
184 3 0.01
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.34
Consensus pattern (182 bp):
CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCAGTT
ATATTACAAAATTATCTATTACATTATAATTTGGGTTCCGATGTGTAAATGT
Found at i:2110966 original size:23 final size:23
Alignment explanation
Indices: 2110937--2110999 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
2110927 ATATAACCAC
2110937 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* * *
2110960 TATCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
2110983 TACCTATTACATCATAT
1 TACCTATTACATTATAT
2111000 TTTTACCTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.38, C:0.19, G:0.05, T:0.38
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:2112594 original size:3 final size:3
Alignment explanation
Indices: 2112586--2112669 Score: 96
Period size: 3 Copynumber: 28.0 Consensus size: 3
2112576 ACTTGTTTGG
* *
2112586 ATC ATC ATC TTC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC TTC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
* * * * * *
2112634 GTC AGC TTC ATC GTC ATC ATC ATC GTC ATC TTC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
2112670 GTCAGCTTCA
Statistics
Matches: 65, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.25, C:0.33, G:0.05, T:0.37
Consensus pattern (3 bp):
ATC
Found at i:2112603 original size:12 final size:12
Alignment explanation
Indices: 2112586--2112681 Score: 99
Period size: 12 Copynumber: 8.2 Consensus size: 12
2112576 ACTTGTTTGG
2112586 ATCATCATCTTC
1 ATCATCATCTTC
2112598 ATCATCA---TC
1 ATCATCATCTTC
*
2112607 ATCATCATCATC
1 ATCATCATCTTC
2112619 ATCATCATCTTC
1 ATCATCATCTTC
* *
2112631 ATCGTCAGCTTC
1 ATCATCATCTTC
* *
2112643 ATCGTCATCATC
1 ATCATCATCTTC
*
2112655 ATCGTCATCTTC
1 ATCATCATCTTC
* *
2112667 ATCGTCAGCTTC
1 ATCATCATCTTC
2112679 ATC
1 ATC
2112682 TTCTGCGACC
Statistics
Matches: 74, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
9 9 0.12
12 65 0.88
ACGTcount: A:0.24, C:0.33, G:0.06, T:0.36
Consensus pattern (12 bp):
ATCATCATCTTC
Found at i:2112609 original size:18 final size:18
Alignment explanation
Indices: 2112586--2112684 Score: 105
Period size: 18 Copynumber: 5.7 Consensus size: 18
2112576 ACTTGTTTGG
2112586 ATCATCATCTTCATCATC
1 ATCATCATCTTCATCATC
2112604 ATCATCA---TCATCATC
1 ATCATCATCTTCATCATC
*
2112619 ATCATCATCTTCATCGTC
1 ATCATCATCTTCATCATC
* * *
2112637 AGCTTCATCGTCATCATC
1 ATCATCATCTTCATCATC
* *
2112655 ATCGTCATCTTCATCGTC
1 ATCATCATCTTCATCATC
* *
2112673 AGCTTCATCTTC
1 ATCATCATCTTC
2112685 TGCGACCGCT
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
15 15 0.22
18 52 0.78
ACGTcount: A:0.23, C:0.33, G:0.06, T:0.37
Consensus pattern (18 bp):
ATCATCATCTTCATCATC
Found at i:2114482 original size:198 final size:198
Alignment explanation
Indices: 2114144--2114714 Score: 1106
Period size: 198 Copynumber: 2.9 Consensus size: 198
2114134 TTTAAATTAG
2114144 TATCGACACAAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAC
1 TATCGACACAAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAC
2114209 TTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGATC
66 TTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGATC
*
2114274 GACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGACCAA
131 GACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCAA
2114339 AAA
196 AAA
*
2114342 TATCGACACCAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAC
1 TATCGACACAAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAC
2114407 TTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGATC
66 TTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGATC
*
2114472 GACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCTTTCATTCTGGACCAA
131 GACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCAA
*
2114537 AAC
196 AAA
2114540 TATCGACACAAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAC
1 TATCGACACAAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAC
2114605 TTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGATC
66 TTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGATC
2114670 GACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTT
131 GACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTT
2114715 GGCCATATTG
Statistics
Matches: 368, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
198 368 1.00
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (198 bp):
TATCGACACAAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAC
TTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGATC
GACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCAA
AAA
Found at i:2114879 original size:19 final size:19
Alignment explanation
Indices: 2114833--2114881 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
2114823 TTATATTCAC
*
2114833 ATACAAAAATATAAATCGT
1 ATACAAAATTATAAATCGT
*
2114852 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
2114871 ATACAAAATTA
1 ATACAAAATTA
2114882 ACCCTACATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.57, C:0.10, G:0.02, T:0.31
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:2116687 original size:33 final size:33
Alignment explanation
Indices: 2116650--2116715 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
2116640 CATCTTAATA
*
2116650 TCACCCCTTAACACCCCAACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
* *
2116683 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
2116716 CCATCTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.23, C:0.48, G:0.00, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCCCAACTTCTTTCACCACT
Found at i:2116774 original size:21 final size:21
Alignment explanation
Indices: 2116749--2116792 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
2116739 CCCTTTATGC
2116749 CTCTCAAGTGTATCTTCGACT
1 CTCTCAAGTGTATCTTCGACT
* *
2116770 CTCTCAAGTTTCTCTTCGACT
1 CTCTCAAGTGTATCTTCGACT
2116791 CT
1 CT
2116793 TGATTGTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.32, G:0.11, T:0.41
Consensus pattern (21 bp):
CTCTCAAGTGTATCTTCGACT
Found at i:2119014 original size:17 final size:18
Alignment explanation
Indices: 2118992--2119034 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
2118982 ATATATCCGG
2118992 TATCATTT-TACCGGTTT
1 TATCATTTATACCGGTTT
2119009 TATCATTTTGATACCGGTTT
1 TATCA-TTT-ATACCGGTTT
2119029 TATCAT
1 TATCAT
2119035 ATTTTTACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 5 0.22
18 3 0.13
19 1 0.04
20 14 0.61
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.51
Consensus pattern (18 bp):
TATCATTTATACCGGTTT
Found at i:2119052 original size:20 final size:19
Alignment explanation
Indices: 2118997--2119043 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
2118987 TCCGGTATCA
2118997 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
2119016 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
2119037 TTTTACC
1 TTTTACC
2119044 TGTTATATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.19, C:0.17, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:2119223 original size:20 final size:19
Alignment explanation
Indices: 2119178--2119223 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 19
2119168 TCCGGTAACG
2119178 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
2119197 TTGTTACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
2119218 TTTTAC
1 TTTTAC
2119224 TTGGTATATC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 2 0.08
20 20 0.80
21 3 0.12
ACGTcount: A:0.17, C:0.15, G:0.11, T:0.57
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:2119714 original size:227 final size:229
Alignment explanation
Indices: 2119273--2119990 Score: 1300
Period size: 227 Copynumber: 3.1 Consensus size: 229
2119263 ATTTTTATAC
*
2119273 GTATGGAAACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
1 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
2119338 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
66 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
2119403 TTATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
131 TTATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
2119468 TATAATAATAAATATGTTTTCCACAGTGAAATAA
196 TATAATAATAAATATGTTTTCCACAGTGAAATAA
*
2119502 GTATGGACACTTTTATAAAAATGATATATATTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
1 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
* *
2119567 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATT-ATTT-AGAATTTCATTTACAAAAAAAA
66 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
* *
2119630 TTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTTAATTTAACAATATTAACCAAA
131 TTATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
*
2119695 GATAATAATAAATATGTTTTCCACAGTGAAATAA
196 TATAATAATAAATATGTTTTCCACAGTGAAATAA
2119729 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
1 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
*
2119794 TTTTT-ATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACACAAAA
66 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
2119858 TTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAA
131 TTATTTGATT-TTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAA
*
2119923 ATATAATAATAAATATATTTT-CACAGTGAAATAA
195 ATATAATAATAAATATGTTTTCCACAGTGAAATAA
* *
2119957 GTATGGACACTTTTATAAAAAGGATAGATACTTT
1 GTATGGACACTTTTATAAAAATGATATATACTTT
2119991 ACAATATAAC
Statistics
Matches: 469, Mismatches: 17, Indels: 7
0.95 0.03 0.01
Matches are distributed among these distances:
226 31 0.07
227 189 0.40
228 78 0.17
229 171 0.36
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.45
Consensus pattern (229 bp):
GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
TTATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
TATAATAATAAATATGTTTTCCACAGTGAAATAA
Found at i:2120770 original size:6 final size:7
Alignment explanation
Indices: 2120757--2120781 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
2120747 TTAAATCTTT
2120757 AATAAAA
1 AATAAAA
2120764 AATAAAA
1 AATAAAA
2120771 AATAAAA
1 AATAAAA
2120778 AATA
1 AATA
2120782 CATATATTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (7 bp):
AATAAAA
Found at i:2130754 original size:23 final size:23
Alignment explanation
Indices: 2130724--2130774 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
2130714 AATAAGTTTT
* *
2130724 TCTTTGTGATCCGTTTATCTCTG
1 TCTTTGTGACCCGTTTATCTATG
2130747 TCTTTGTGACCCGTTTATCTATG
1 TCTTTGTGACCCGTTTATCTATG
2130770 TCTTT
1 TCTTT
2130775 CGGTAGTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.10, C:0.22, G:0.16, T:0.53
Consensus pattern (23 bp):
TCTTTGTGACCCGTTTATCTATG
Found at i:2133717 original size:2 final size:2
Alignment explanation
Indices: 2133710--2133745 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
2133700 ACTAATAAGC
2133710 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2133746 GTGATTATAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2136635 original size:30 final size:29
Alignment explanation
Indices: 2136584--2136641 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 29
2136574 GAACCAGTAA
*
2136584 CTAAAATATAACTTTTGAAAGTTTAGGGG
1 CTAAAATATAACTTTTGAAAGTGTAGGGG
*
2136613 CTAAAGTATAAAC-TTTGAAAAGTGTAGGG
1 CTAAAATAT-AACTTTTG-AAAGTGTAGGG
2136642 ACTGAAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 12 0.48
30 13 0.52
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (29 bp):
CTAAAATATAACTTTTGAAAGTGTAGGGG
Found at i:2138871 original size:20 final size:20
Alignment explanation
Indices: 2138846--2138895 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
2138836 GACCAACAAA
2138846 TTCGCAACGCAAACTCCAAT
1 TTCGCAACGCAAACTCCAAT
* **
2138866 TTCGCAACCCAATTTCCAAT
1 TTCGCAACGCAAACTCCAAT
2138886 TTCGCAACGC
1 TTCGCAACGC
2138896 GAATCTGTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.30, C:0.36, G:0.10, T:0.24
Consensus pattern (20 bp):
TTCGCAACGCAAACTCCAAT
Found at i:2138910 original size:20 final size:20
Alignment explanation
Indices: 2138887--2138933 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
2138877 ATTTCCAATT
2138887 TCGCAACGCGAATCTGTAAA
1 TCGCAACGCGAATCTGTAAA
*
2138907 TCGCAACGCGAATTTGTAAA
1 TCGCAACGCGAATCTGTAAA
2138927 TCGCAAC
1 TCGCAAC
2138934 ACAGAAGTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.21
Consensus pattern (20 bp):
TCGCAACGCGAATCTGTAAA
Found at i:2138950 original size:20 final size:20
Alignment explanation
Indices: 2138927--2139107 Score: 117
Period size: 20 Copynumber: 9.1 Consensus size: 20
2138917 AATTTGTAAA
2138927 TCGCAACACAGAAGTCAAAT
1 TCGCAACACAGAAGTCAAAT
* *
2138947 TCGCAACGC-GATAGTTAAAT
1 TCGCAACACAGA-AGTCAAAT
*
2138967 TCGCAACACAAAAGTCAAAT
1 TCGCAACACAGAAGTCAAAT
*
2138987 TCGCAACGC-GATAGTCAAAT
1 TCGCAACACAGA-AGTCAAAT
* **
2139007 TTGCAAC-GTGATAGTCAAAT
1 TCGCAACACAGA-AGTCAAAT
* * *
2139027 TCGCAACGC-GAA-CCTATAAA
1 TCGCAACACAGAAGTC-A-AAT
*
2139047 TCGCAAC-GAGAATTTGT-AAA-
1 TCGCAACACAGAA---GTCAAAT
*
2139067 TCGCAACACATAAGTCAAAT
1 TCGCAACACAGAAGTCAAAT
*
2139087 TCGCAACACAAAAGTCAAAT
1 TCGCAACACAGAAGTCAAAT
2139107 T
1 T
2139108 TTCAACGTGG
Statistics
Matches: 128, Mismatches: 18, Indels: 30
0.73 0.10 0.17
Matches are distributed among these distances:
18 3 0.02
19 8 0.06
20 110 0.86
21 6 0.05
22 1 0.01
ACGTcount: A:0.41, C:0.23, G:0.15, T:0.20
Consensus pattern (20 bp):
TCGCAACACAGAAGTCAAAT
Found at i:2138951 original size:40 final size:39
Alignment explanation
Indices: 2138907--2139037 Score: 158
Period size: 40 Copynumber: 3.3 Consensus size: 39
2138897 AATCTGTAAA
*
2138907 TCGCAACGCGAATTTGTAAA-TCGCAACACAGAAGTCAAAT
1 TCGCAACGCG-A-TAGTAAATTCGCAACACAGAAGTCAAAT
*
2138947 TCGCAACGCGATAGTTAAATTCGCAACACAAAAGTCAAAT
1 TCGCAACGCGATAG-TAAATTCGCAACACAGAAGTCAAAT
* **
2138987 TCGCAACGCGATAGTCAAATTTGCAAC-GTGATAGTCAAAT
1 TCGCAACGCGATAGT-AAATTCGCAACACAGA-AGTCAAAT
2139027 TCGCAACGCGA
1 TCGCAACGCGA
2139038 ACCTATAAAT
Statistics
Matches: 81, Mismatches: 6, Indels: 8
0.85 0.06 0.08
Matches are distributed among these distances:
38 2 0.02
39 7 0.09
40 72 0.89
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.21
Consensus pattern (39 bp):
TCGCAACGCGATAGTAAATTCGCAACACAGAAGTCAAAT
Found at i:2139053 original size:40 final size:38
Alignment explanation
Indices: 2138907--2139058 Score: 123
Period size: 40 Copynumber: 3.8 Consensus size: 38
2138897 AATCTGTAAA
* *
2138907 TCGCAACGCGAATTTGTAAA-TCGCAACACAGAAGTCAAAT
1 TCGCAACGCGAA--TATAAATTCGCAAC-GAGAAGTCAAAT
* *
2138947 TCGCAACGCG-ATAGTTAAATTCGCAACACAAAAGTCAAAT
1 TCGCAACGCGAATA--TAAATTCGCAAC-GAGAAGTCAAAT
* *
2138987 TCGCAACGCG-ATAGTCAAATTTGCAACGTGATAGTCAAAT
1 TCGCAACGCGAATA-T-AAATTCGCAACGAGA-AGTCAAAT
2139027 TCGCAACGCGAACCTATAAA-TCGCAACGAGAA
1 TCGCAACGCGAA--TATAAATTCGCAACGAGAA
2139059 TTTGTAAATC
Statistics
Matches: 95, Mismatches: 9, Indels: 17
0.79 0.07 0.14
Matches are distributed among these distances:
37 1 0.01
39 8 0.08
40 79 0.83
41 4 0.04
42 1 0.01
43 2 0.02
ACGTcount: A:0.39, C:0.23, G:0.18, T:0.20
Consensus pattern (38 bp):
TCGCAACGCGAATATAAATTCGCAACGAGAAGTCAAAT
Found at i:2139054 original size:60 final size:60
Alignment explanation
Indices: 2138886--2139093 Score: 162
Period size: 60 Copynumber: 3.5 Consensus size: 60
2138876 AATTTCCAAT
* ** * *
2138886 TTCGCAACGCGAATCTGT-AAA-TCGCAACGCGAATTTGTAAATCGCAACACAGAAGTCAAA
1 TTCGCAACGCG-AT-AGTCAAATTCGCAACGCGAAACTATAAATCGCAACGCAGAAGTCAAA
* * * * *
2138946 TTCGCAACGCGATAGTTAAATTCGCAACACAAAAGTCA-AATTCGCAACGC-GATAGTCAAA
1 TTCGCAACGCGATAGTCAAATTCGCAACGCGAAACT-ATAAATCGCAACGCAGA-AGTCAAA
* * *
2139006 TTTGCAACGTGATAGTCAAATTCGCAACGCGAACCTATAAATCGCAACG-AGAATTTGT-AAA
1 TTCGCAACGCGATAGTCAAATTCGCAACGCGAAACTATAAATCGCAACGCAGAA---GTCAAA
*
2139067 -TCGCAACAC-ATAAGTCAAATTCGCAAC
1 TTCGCAACGCGAT-AGTCAAATTCGCAAC
2139094 ACAAAAGTCA
Statistics
Matches: 119, Mismatches: 19, Indels: 20
0.75 0.12 0.13
Matches are distributed among these distances:
58 2 0.02
59 11 0.09
60 101 0.85
61 3 0.03
62 2 0.02
ACGTcount: A:0.39, C:0.23, G:0.17, T:0.21
Consensus pattern (60 bp):
TTCGCAACGCGATAGTCAAATTCGCAACGCGAAACTATAAATCGCAACGCAGAAGTCAAA
Found at i:2139167 original size:20 final size:19
Alignment explanation
Indices: 2139117--2139173 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
2139107 TTTCAACGTG
*
2139117 GAATTTCAAATTCGTAACT
1 GAATTTCAAATTCGCAACT
2139136 GAATTTCAAATTCGCAACT
1 GAATTTCAAATTCGCAACT
* *
2139155 AGATTTTCGAATTCGCAAC
1 -GAATTTCAAATTCGCAAC
2139174 ACGAATTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.53
20 16 0.47
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.33
Consensus pattern (19 bp):
GAATTTCAAATTCGCAACT
Found at i:2139370 original size:16 final size:16
Alignment explanation
Indices: 2139349--2139388 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
2139339 TCCCCATCTC
*
2139349 TAATTTTTTTTTTACA
1 TAATTTTTTTTCTACA
* *
2139365 TAATTTTATTTCTATA
1 TAATTTTTTTTCTACA
2139381 TAATTTTT
1 TAATTTTT
2139389 CAATGATTTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.68
Consensus pattern (16 bp):
TAATTTTTTTTCTACA
Found at i:2140005 original size:12 final size:12
Alignment explanation
Indices: 2139984--2140017 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
2139974 ACCACATTTC
*
2139984 CAATACCAAACA
1 CAATATCAAACA
2139996 CAATATCAAACA
1 CAATATCAAACA
*
2140008 CAATCTCAAA
1 CAATATCAAA
2140018 ACCCACAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.56, C:0.29, G:0.00, T:0.15
Consensus pattern (12 bp):
CAATATCAAACA
Found at i:2140171 original size:24 final size:24
Alignment explanation
Indices: 2140143--2140195 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
2140133 GTATTCAAAA
2140143 TTGATCTTGGTCAATACCCGGACT
1 TTGATCTTGGTCAATACCCGGACT
* *
2140167 TTGATCTTGGTCAATACTCGGATT
1 TTGATCTTGGTCAATACCCGGACT
2140191 TTGAT
1 TTGAT
2140196 GATGTGATGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.40
Consensus pattern (24 bp):
TTGATCTTGGTCAATACCCGGACT
Found at i:2142850 original size:14 final size:14
Alignment explanation
Indices: 2142812--2142850 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
2142802 ATAGTCAAAT
2142812 TCGCAACGCG-AAA
1 TCGCAACGCGAAAA
2142825 TCGCAAAC-CGAAAA
1 TCGC-AACGCGAAAA
2142839 TCGCAACGCGAA
1 TCGCAACGCGAA
2142851 TTTGACTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
13 9 0.39
14 14 0.61
ACGTcount: A:0.41, C:0.31, G:0.21, T:0.08
Consensus pattern (14 bp):
TCGCAACGCGAAAA
Found at i:2142999 original size:66 final size:64
Alignment explanation
Indices: 2142928--2143103 Score: 246
Period size: 66 Copynumber: 2.6 Consensus size: 64
2142918 AATTTAAAAC
2142928 AACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAAATAATTCTTATTTACACATCAAATT
1 AACAAATCAACTTTTA-AAATCAATTAAACAAGCAAAAAAATAATTCTTATTTACACATC-AATT
2142993 A
64 A
* *
2142994 AACAAATCAACTTTTATAAATCAATTAAACAAGC-AAAAAATAATTCTTATTTCCTCATCAATTA
1 AACAAATCAACTTTTA-AAATCAATTAAACAAGCAAAAAAATAATTCTTATTTACACATCAATTA
2143058 AACAAATCAACTTTCAATGTAAAATTCAATTAAACAAGCAAAAAAA
1 AACAAATCAAC-TT---T-TAAAA-TCAATTAAACAAGCAAAAAAA
2143104 GTGTACCCCA
Statistics
Matches: 100, Mismatches: 3, Indels: 10
0.88 0.03 0.09
Matches are distributed among these distances:
64 16 0.16
65 25 0.25
66 33 0.33
68 4 0.04
69 16 0.16
70 6 0.06
ACGTcount: A:0.53, C:0.16, G:0.02, T:0.28
Consensus pattern (64 bp):
AACAAATCAACTTTTAAAATCAATTAAACAAGCAAAAAAATAATTCTTATTTACACATCAATTA
Found at i:2144455 original size:21 final size:22
Alignment explanation
Indices: 2144429--2144496 Score: 79
Period size: 21 Copynumber: 3.2 Consensus size: 22
2144419 GTGAATCGAG
*
2144429 CTCTTGAACGGTGGGC-GGGAC
1 CTCTTGAACGGTGGACAGGGAC
* *
2144450 CTCTTGAACGAT-GACAGGGGC
1 CTCTTGAACGGTGGACAGGGAC
*
2144471 CTCTTGAACGGTGGA-AGGGGC
1 CTCTTGAACGGTGGACAGGGAC
2144492 CTCTT
1 CTCTT
2144497 CGATGATAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
20 2 0.05
21 37 0.90
22 2 0.05
ACGTcount: A:0.18, C:0.24, G:0.37, T:0.22
Consensus pattern (22 bp):
CTCTTGAACGGTGGACAGGGAC
Found at i:2144495 original size:42 final size:41
Alignment explanation
Indices: 2144429--2144547 Score: 134
Period size: 42 Copynumber: 2.8 Consensus size: 41
2144419 GTGAATCGAG
*
2144429 CTCTTGAACGGTGG-GCGGGACCTCTTGAACGATGACAGGGGC
1 CTCTTGAACGGTGGAG-GGG-CCTCTTGAATGATGACAGGGGC
* *
2144471 CTCTTGAACGGTGGAAGGGGCCTCTTCG-ATGATAAGAGGGGC
1 CTCTTGAACGGTGG-AGGGGCCTCTT-GAATGATGACAGGGGC
* *
2144513 CTCTTGAACGATAGGAGGCGCCTCTTGAATGATGA
1 CTCTTGAACGGT-GGAGGGGCCTCTTGAATGATGA
2144548 TAGGTGCATC
Statistics
Matches: 66, Mismatches: 6, Indels: 10
0.80 0.07 0.12
Matches are distributed among these distances:
41 1 0.02
42 58 0.88
43 6 0.09
44 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.35, T:0.22
Consensus pattern (41 bp):
CTCTTGAACGGTGGAGGGGCCTCTTGAATGATGACAGGGGC
Found at i:2144525 original size:21 final size:21
Alignment explanation
Indices: 2144449--2144541 Score: 91
Period size: 21 Copynumber: 4.4 Consensus size: 21
2144439 GTGGGCGGGA
* *
2144449 CCTCTTGAACGATGACAGGGG
1 CCTCTTGAACGATAAGAGGGG
* *
2144470 CCTCTTGAACGGT-GGAAGGGG
1 CCTCTTGAACGATAAG-AGGGG
*
2144491 CCTCTTCG-ATGATAAGAGGGG
1 CCTCTT-GAACGATAAGAGGGG
* *
2144512 CCTCTTGAACGATAGGAGGCG
1 CCTCTTGAACGATAAGAGGGG
2144533 CCTCTTGAA
1 CCTCTTGAA
2144542 TGATGATAGG
Statistics
Matches: 59, Mismatches: 9, Indels: 8
0.78 0.12 0.11
Matches are distributed among these distances:
20 1 0.02
21 56 0.95
22 2 0.03
ACGTcount: A:0.23, C:0.23, G:0.33, T:0.22
Consensus pattern (21 bp):
CCTCTTGAACGATAAGAGGGG
Found at i:2146763 original size:19 final size:19
Alignment explanation
Indices: 2146712--2146765 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 19
2146702 AGTAGTTTCT
*
2146712 GAAACTTAAATTCGCAACGC
1 GAAACTAAAATT-GCAACGC
*
2146732 GAAAATGAAAATTGCAACGC
1 GAAACT-AAAATTGCAACGC
2146752 GAAACTAAAATTGC
1 GAAACTAAAATTGC
2146766 GTTGCGATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
19 8 0.27
20 17 0.57
21 5 0.17
ACGTcount: A:0.46, C:0.19, G:0.17, T:0.19
Consensus pattern (19 bp):
GAAACTAAAATTGCAACGC
Found at i:2147164 original size:22 final size:22
Alignment explanation
Indices: 2147138--2147195 Score: 89
Period size: 22 Copynumber: 2.6 Consensus size: 22
2147128 GATAGAGATA
2147138 GACGGATTTCGCCGGAGATGAG
1 GACGGATTTCGCCGGAGATGAG
* *
2147160 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGAG
*
2147182 GACGGATGTCGCCG
1 GACGGATTTCGCCG
2147196 TAGAGAGTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.19, C:0.19, G:0.43, T:0.19
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGAG
Found at i:2147328 original size:20 final size:20
Alignment explanation
Indices: 2147303--2147434 Score: 149
Period size: 20 Copynumber: 6.7 Consensus size: 20
2147293 ATTGTGTTTC
2147303 GCGTTGCGAATTTGACTTTT
1 GCGTTGCGAATTTGACTTTT
* * * *
2147323 GCGTTGCAAATTTAACTATC
1 GCGTTGCGAATTTGACTTTT
2147343 GCGTTGCGAATTTGACTTTT
1 GCGTTGCGAATTTGACTTTT
*
2147363 GTGTTGCGAATTTGACTTTT
1 GCGTTGCGAATTTGACTTTT
* * * *
2147383 GTGTTGCTAATTTGACTATC
1 GCGTTGCGAATTTGACTTTT
* *
2147403 GCGTTGCGAATTTTACTTCT
1 GCGTTGCGAATTTGACTTTT
*
2147423 GGGTTGC-AATTT
1 GCGTTGCGAATTT
2147435 ACAAATTCGA
Statistics
Matches: 93, Mismatches: 19, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
19 5 0.05
20 88 0.95
ACGTcount: A:0.18, C:0.15, G:0.23, T:0.44
Consensus pattern (20 bp):
GCGTTGCGAATTTGACTTTT
Found at i:2147401 original size:60 final size:60
Alignment explanation
Indices: 2147305--2147434 Score: 199
Period size: 60 Copynumber: 2.2 Consensus size: 60
2147295 TGTGTTTCGC
* *
2147305 GTTGCGAATTTGACTTTTGCGTTGCAAATTTAACTATCGCGTTGCGAATTTGACTTTTGT
1 GTTGCGAATTTGACTTTTGCGTTGCAAATTTAACTATCGCGTTGCGAATTTGACTTCTGG
* * * *
2147365 GTTGCGAATTTGACTTTTGTGTTGCTAATTTGACTATCGCGTTGCGAATTTTACTTCTGG
1 GTTGCGAATTTGACTTTTGCGTTGCAAATTTAACTATCGCGTTGCGAATTTGACTTCTGG
2147425 GTTGC-AATTT
1 GTTGCGAATTT
2147435 ACAAATTCGA
Statistics
Matches: 64, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
59 5 0.08
60 59 0.92
ACGTcount: A:0.18, C:0.15, G:0.22, T:0.45
Consensus pattern (60 bp):
GTTGCGAATTTGACTTTTGCGTTGCAAATTTAACTATCGCGTTGCGAATTTGACTTCTGG
Found at i:2147449 original size:40 final size:40
Alignment explanation
Indices: 2147365--2147451 Score: 97
Period size: 40 Copynumber: 2.2 Consensus size: 40
2147355 TGACTTTTGT
* * * *
2147365 GTTGCGAATTTGACTTTTGTGTTGCTAATTTGACTATCGC
1 GTTGCGAATTTGACTTCTGGGTTGCTAATTTGACAATCGA
*
2147405 GTTGCGAATTTTACTTCTGGGTTGC-AATTT-ACAAATTCGA
1 GTTGCGAATTTGACTTCTGGGTTGCTAATTTGAC-AA-TCGA
2147445 GTTGCGA
1 GTTGCGA
2147452 TTTACAGATA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.05
39 6 0.15
40 32 0.80
ACGTcount: A:0.21, C:0.15, G:0.23, T:0.41
Consensus pattern (40 bp):
GTTGCGAATTTGACTTCTGGGTTGCTAATTTGACAATCGA
Found at i:2147449 original size:60 final size:58
Alignment explanation
Indices: 2147305--2147476 Score: 159
Period size: 60 Copynumber: 2.9 Consensus size: 58
2147295 TGTGTTTCGC
* * * * *
2147305 GTTGCGAATTTGACTTTTGCGTTGCAAATTTAACTATCGCGTTGCGAATTTGACTTTTGT
1 GTTGCGAATTTGACATTCGAGTTGC-AATTT-ACTATCGCGTTGCGAATTTGACTTCTGG
* * * *
2147365 GTTGCGAATTTGACTTTTGTGTTGCTAATTTGACTATCGCGTTGCGAATTTTACTTCTGG
1 GTTGCGAATTTGACATTCGAGTTGC-AATTT-ACTATCGCGTTGCGAATTTGACTTCTGG
* *
2147425 GTTGC-AATTT-ACAAATTCGAGTTGCGATTTACAGATACGCGTTGCGAATTTG
1 GTTGCGAATTTGAC--ATTCGAGTTGCAATTTAC-TAT-CGCGTTGCGAATTTG
2147477 GAAAATCGCA
Statistics
Matches: 96, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
58 4 0.04
59 11 0.11
60 81 0.84
ACGTcount: A:0.21, C:0.15, G:0.23, T:0.41
Consensus pattern (58 bp):
GTTGCGAATTTGACATTCGAGTTGCAATTTACTATCGCGTTGCGAATTTGACTTCTGG
Found at i:2147511 original size:20 final size:20
Alignment explanation
Indices: 2147425--2147512 Score: 77
Period size: 20 Copynumber: 4.3 Consensus size: 20
2147415 TTACTTCTGG
* *
2147425 GTTGCAATTTACAAATTCGA
1 GTTGCGATTTACAAATTCGC
* *
2147445 GTTGCGATTTACAGATACGC
1 GTTGCGATTTACAAATTCGC
** *
2147465 GTTGCGAATTTGGAAAATCGC
1 GTTGCG-ATTTACAAATTCGC
** *
2147486 AATGCGATTTACATATTCGC
1 GTTGCGATTTACAAATTCGC
2147506 GTTGCGA
1 GTTGCGA
2147513 AATTGGAAAT
Statistics
Matches: 50, Mismatches: 17, Indels: 2
0.72 0.25 0.03
Matches are distributed among these distances:
20 37 0.74
21 13 0.26
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (20 bp):
GTTGCGATTTACAAATTCGC
Found at i:2147549 original size:20 final size:20
Alignment explanation
Indices: 2147502--2147550 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
2147492 ATTTACATAT
*
2147502 TCGCGTTGCGAAATTGGAAA
1 TCGCGTTGCAAAATTGGAAA
* * * *
2147522 TTGGGTTGCAAAATTTGAGA
1 TCGCGTTGCAAAATTGGAAA
2147542 TCGCGTTGC
1 TCGCGTTGC
2147551 GAATTTGTTG
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.14, G:0.31, T:0.31
Consensus pattern (20 bp):
TCGCGTTGCAAAATTGGAAA
Found at i:2147728 original size:36 final size:36
Alignment explanation
Indices: 2147684--2147786 Score: 188
Period size: 36 Copynumber: 2.9 Consensus size: 36
2147674 AGTTGAGTAT
*
2147684 TATCAGCTTTGGTACATTTGTGTATCAATGTTATCA
1 TATCAGCTTTGGTACATTCGTGTATCAATGTTATCA
2147720 TATCAGCTTTGGTACATTCGTGTATCAATGTTATCA
1 TATCAGCTTTGGTACATTCGTGTATCAATGTTATCA
*
2147756 TATCAGCTATGGTACATTCGTGTATCAATGT
1 TATCAGCTTTGGTACATTCGTGTATCAATGT
2147787 CCAGCACCGT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 65 1.00
ACGTcount: A:0.25, C:0.16, G:0.17, T:0.42
Consensus pattern (36 bp):
TATCAGCTTTGGTACATTCGTGTATCAATGTTATCA
Found at i:2157964 original size:2 final size:2
Alignment explanation
Indices: 2157957--2157988 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
2157947 TGAAAAGAAA
2157957 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2157989 GATAATTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2158327 original size:33 final size:33
Alignment explanation
Indices: 2158285--2158348 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
2158275 TTTAAGATAT
2158285 ACTATATGTTTATGATCTCAATTATCACTTTAA
1 ACTATATGTTTATGATCTCAATTATCACTTTAA
2158318 ACTATATGTTTATGATCTCAATTATCACTTT
1 ACTATATGTTTATGATCTCAATTATCACTTT
2158349 TATTTCATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.31, C:0.16, G:0.06, T:0.47
Consensus pattern (33 bp):
ACTATATGTTTATGATCTCAATTATCACTTTAA
Found at i:2171538 original size:2 final size:2
Alignment explanation
Indices: 2171531--2171571 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
2171521 CCTTTCTTAA
* * *
2171531 CT CT CT CT AT CA CA CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
2171572 CCTATAGTCC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.07, C:0.49, G:0.00, T:0.44
Consensus pattern (2 bp):
CT
Found at i:2177703 original size:13 final size:13
Alignment explanation
Indices: 2177685--2177710 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2177675 GTTTGACAAC
2177685 TATCCTATAAAAT
1 TATCCTATAAAAT
2177698 TATCCTATAAAAT
1 TATCCTATAAAAT
2177711 CGTTGTCTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (13 bp):
TATCCTATAAAAT
Found at i:2178232 original size:22 final size:23
Alignment explanation
Indices: 2178207--2178253 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
2178197 TTATAATTAG
*
2178207 AATATTATATAATATTAAT-ATT
1 AATAATATATAATATTAATGATT
* *
2178229 AATAATATATTATGTTAATGATT
1 AATAATATATAATATTAATGATT
2178252 AA
1 AA
2178254 ATTTATTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (23 bp):
AATAATATATAATATTAATGATT
Found at i:2178383 original size:10 final size:11
Alignment explanation
Indices: 2178339--2178387 Score: 66
Period size: 10 Copynumber: 4.6 Consensus size: 11
2178329 ATTGTTAGAG
2178339 TGTTATTAGTT
1 TGTTATTAGTT
*
2178350 TGTTA-TGGTT
1 TGTTATTAGTT
*
2178360 TGTTATTAGCT
1 TGTTATTAGTT
2178371 TGTTATTAG-T
1 TGTTATTAGTT
2178381 TGTTATT
1 TGTTATT
2178388 GGTTACTTGG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
10 17 0.50
11 17 0.50
ACGTcount: A:0.16, C:0.02, G:0.20, T:0.61
Consensus pattern (11 bp):
TGTTATTAGTT
Found at i:2178383 original size:21 final size:21
Alignment explanation
Indices: 2178339--2178387 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
2178329 ATTGTTAGAG
* *
2178339 TGTTATTAGTTTGTTATGGTT
1 TGTTATTAGCTTGTTATAGTT
2178360 TGTTATTAGCTTGTTATTAG-T
1 TGTTATTAGCTTGTTA-TAGTT
2178381 TGTTATT
1 TGTTATT
2178388 GGTTACTTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 23 0.92
22 2 0.08
ACGTcount: A:0.16, C:0.02, G:0.20, T:0.61
Consensus pattern (21 bp):
TGTTATTAGCTTGTTATAGTT
Found at i:2179907 original size:11 final size:11
Alignment explanation
Indices: 2179893--2179941 Score: 57
Period size: 10 Copynumber: 4.6 Consensus size: 11
2179883 AATGTTAGAG
2179893 TGTTATTAGTT
1 TGTTATTAGTT
*
2179904 TGTTA-TGGTT
1 TGTTATTAGTT
* *
2179914 TATTATTAGCT
1 TGTTATTAGTT
2179925 TGTTATTAG-T
1 TGTTATTAGTT
2179935 TGTTATT
1 TGTTATT
2179942 GGTTACTTGG
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
10 16 0.50
11 16 0.50
ACGTcount: A:0.18, C:0.02, G:0.18, T:0.61
Consensus pattern (11 bp):
TGTTATTAGTT
Found at i:2179940 original size:21 final size:21
Alignment explanation
Indices: 2179893--2179941 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
2179883 AATGTTAGAG
* *
2179893 TGTTATTAGTTTGTTATGGTT
1 TGTTATTAGCTTGTTATAGTT
*
2179914 TATTATTAGCTTGTTATTAG-T
1 TGTTATTAGCTTGTTA-TAGTT
2179935 TGTTATT
1 TGTTATT
2179942 GGTTACTTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 21 0.91
22 2 0.09
ACGTcount: A:0.18, C:0.02, G:0.18, T:0.61
Consensus pattern (21 bp):
TGTTATTAGCTTGTTATAGTT
Found at i:2188398 original size:81 final size:81
Alignment explanation
Indices: 2188260--2188418 Score: 255
Period size: 81 Copynumber: 2.0 Consensus size: 81
2188250 AGTCTCTTGC
* * *
2188260 ACAACCGGCTCGGTAGCTTCCTGCTCTACACCTCTGTGAGAGCTTATCGATCTGCCATTTCGTGT
1 ACAACCGGCTCAGTAACTTCCTGCTCTACACCTCTGTGAGAGCTTATCGATCCGCCATTTCGTGT
2188325 GCGAACCATTCTCGGT
66 GCGAACCATTCTCGGT
* * *
2188341 ACAACCGGCTCAGTAACTTCCTGCTCTACACCTCTGTGAGAGCTTGTTGCTCCGCCATTTCGTGT
1 ACAACCGGCTCAGTAACTTCCTGCTCTACACCTCTGTGAGAGCTTATCGATCCGCCATTTCGTGT
*
2188406 GTGAACCATTCTC
66 GCGAACCATTCTC
2188419 TGTAACTCGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 71 1.00
ACGTcount: A:0.18, C:0.31, G:0.21, T:0.30
Consensus pattern (81 bp):
ACAACCGGCTCAGTAACTTCCTGCTCTACACCTCTGTGAGAGCTTATCGATCCGCCATTTCGTGT
GCGAACCATTCTCGGT
Found at i:2188659 original size:57 final size:55
Alignment explanation
Indices: 2188541--2188826 Score: 192
Period size: 54 Copynumber: 5.2 Consensus size: 55
2188531 GAGCATCTTC
* ** ** * *
2188541 GTGCTTCAACCGAGAGTTGACACCTCTGTAT-AGCCAAAAGTGATTGAGCACCTCT
1 GTGCTTCAATCGAGAACTGACACCTCTGT-TCAGTAAAAAATGACTGAGCACCTCT
2188596 GTGCTTCAATCGAGAACTGACACCTCTGTTCAGTTAAAAAAATGACTGAGCACCTCT
1 GTGCTTCAATCGAGAACTGACACCTCTGTTCAG-T-AAAAAATGACTGAGCACCTCT
* * * * * *
2188653 GTGCTTC-AGCCAGGAGCTGACACCTCTGTGT-AGCT--AAGACGATTGAGCACCTCT
1 GTGCTTCAATCGA-GAACTGACACCTCTGT-TCAG-TAAAAAATGACTGAGCACCTCT
* * * *** *
2188707 GTGCTTTAATCGAGGACTGACACCTCTGTGCAACCAAAAATGACGGAGCACCTCT
1 GTGCTTCAATCGAGAACTGACACCTCTGTTCAGTAAAAAATGACTGAGCACCTCT
* * * * * * *
2188762 GTGCTTCAGTCTAAAATCTGGA-ACCTCTGTGCA-T-TAGAATGATTGAGCACCTCT
1 GTGCTTCAATCGAGAA-CT-GACACCTCTGTTCAGTAAAAAATGACTGAGCACCTCT
*
2188816 GTGCTACAATC
1 GTGCTTCAATC
2188827 TAAAATCAAG
Statistics
Matches: 182, Mismatches: 38, Indels: 23
0.75 0.16 0.09
Matches are distributed among these distances:
54 63 0.35
55 57 0.31
56 16 0.09
57 45 0.25
58 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (55 bp):
GTGCTTCAATCGAGAACTGACACCTCTGTTCAGTAAAAAATGACTGAGCACCTCT
Found at i:2188719 original size:111 final size:110
Alignment explanation
Indices: 2188541--2188770 Score: 304
Period size: 111 Copynumber: 2.1 Consensus size: 110
2188531 GAGCATCTTC
* * *
2188541 GTGCTTCAACCGAGAGTTGACACCTCTGTATAGCCAAAAGTGATTGAGCACCTCTGTGCTTCAAT
1 GTGCTTCAGCCGAGAGCTGACACCTCTGTATAGCCAAAAGCGATTGAGCACCTCTGTGCTTCAAT
* *
2188606 CGAGAACTGACACCTCTGTTCAGTTA-AAAAAATGACTGAGCACCTCT
66 CGAGAACTGACACCTCTGTGCA---ACAAAAAATGACGGAGCACCTCT
* * * *
2188653 GTGCTTCAGCC-AGGAGCTGACACCTCTGTGTAGCTAAGA-CGATTGAGCACCTCTGTGCTTTAA
1 GTGCTTCAGCCGA-GAGCTGACACCTCTGTATAGCCAAAAGCGATTGAGCACCTCTGTGCTTCAA
* *
2188716 TCGAGGACTGACACCTCTGTGCAACCAAAAATGACGGAGCACCTCT
65 TCGAGAACTGACACCTCTGTGCAACAAAAAATGACGGAGCACCTCT
2188762 GTGCTTCAG
1 GTGCTTCAG
2188771 TCTAAAATCT
Statistics
Matches: 105, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
108 1 0.01
109 28 0.27
111 44 0.42
112 32 0.30
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (110 bp):
GTGCTTCAGCCGAGAGCTGACACCTCTGTATAGCCAAAAGCGATTGAGCACCTCTGTGCTTCAAT
CGAGAACTGACACCTCTGTGCAACAAAAAATGACGGAGCACCTCT
Found at i:2188730 original size:27 final size:27
Alignment explanation
Indices: 2188589--2188737 Score: 81
Period size: 27 Copynumber: 5.4 Consensus size: 27
2188579 AGTGATTGAG
* *
2188589 CACCTCTGTGCTTCAATCGAGAACTGA
1 CACCTCTGTGCTTTAATCGAGGACTGA
* * *** *
2188616 CACCTCTGTTCAGTTAAAAAAATGACTGA
1 CACCTCTGTGC--TTTAATCGAGGACTGA
* * *
2188645 GCACCTCTGTGC-TTCAGCCAGGAGCTGA
1 -CACCTCTGTGCTTTAATCGAGGA-CTGA
* * *
2188673 CACCTCTGTG-TAGCTAA--GACGATTGA
1 CACCTCTGTGCT--TTAATCGAGGACTGA
2188699 GCACCTCTGTGCTTTAATCGAGGACTGA
1 -CACCTCTGTGCTTTAATCGAGGACTGA
2188727 CACCTCTGTGC
1 CACCTCTGTGC
2188738 AACCAAAAAT
Statistics
Matches: 89, Mismatches: 22, Indels: 22
0.67 0.17 0.17
Matches are distributed among these distances:
26 6 0.07
27 49 0.55
28 12 0.13
29 12 0.13
30 10 0.11
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (27 bp):
CACCTCTGTGCTTTAATCGAGGACTGA
Found at i:2188816 original size:54 final size:54
Alignment explanation
Indices: 2188752--2188949 Score: 176
Period size: 54 Copynumber: 3.8 Consensus size: 54
2188742 AAAAATGACG
* * **
2188752 GAGCACCTCTGTGCTTCAGTCTAAAATCTGGAACCTCTGTGCATTAGAATGATT
1 GAGCACCTCTGTGCTACAATCTAAAATCAAGAACCTCTGTGCATTAGAATGATT
* * * *
2188806 GAGCACCTCTGTGCTACAATCTAAAATCAAGCACCTCCGTGCTTTTACAA--A-T
1 GAGCACCTCTGTGCTACAATCTAAAATCAAGAACCTCTGTGC-ATTAGAATGATT
** * *** * *
2188858 --G-A-CTCTGTGCTTTAGTCTAAAATTTGGCACCTCTGTGTATTAGAATGATT
1 GAGCACCTCTGTGCTACAATCTAAAATCAAGAACCTCTGTGCATTAGAATGATT
* *
2188908 GAGCACCTCTGTGCTACAATCAAAAATCAAGAACCTTTGTGC
1 GAGCACCTCTGTGCTACAATCTAAAATCAAGAACCTCTGTGC
2188950 TTTTACAAAT
Statistics
Matches: 108, Mismatches: 28, Indels: 16
0.71 0.18 0.11
Matches are distributed among these distances:
47 5 0.05
48 28 0.26
49 2 0.02
50 2 0.02
52 2 0.02
53 2 0.02
54 62 0.57
55 5 0.05
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (54 bp):
GAGCACCTCTGTGCTACAATCTAAAATCAAGAACCTCTGTGCATTAGAATGATT
Found at i:2188819 original size:109 final size:109
Alignment explanation
Indices: 2188558--2188826 Score: 294
Period size: 109 Copynumber: 2.4 Consensus size: 109
2188548 AACCGAGAGT
** * *
2188558 TGACACCTCTGTATAGCCAAAAGTGATTGAGCACCTCTGTGCTTCAATCGAGAACTGACACCTCT
1 TGACACCTCTGTGCAGCTAAGA-TGATTGAGCACCTCTGTGCTTCAATCGAGAACTGACACCTCT
* * **
2188623 GTTCAGTTAAAAAAATGACTGAGCACCTCTGTGCTTCAGCCAGGAGC
65 GTGCA--TAAAAAAATGACGGAGCACCTCTGTGCTTCAGCCAAAAGC
* * * *
2188670 TGACACCTCTGTGTAGCTAAGACGATTGAGCACCTCTGTGCTTTAATCGAGGACTGACACCTCTG
1 TGACACCTCTGTGCAGCTAAGATGATTGAGCACCTCTGTGCTTCAATCGAGAACTGACACCTCTG
* * *
2188735 TGCA-ACCAAAAATGACGGAGCACCTCTGTGCTTCAGTCTAAAATC
66 TGCATA-AAAAAATGACGGAGCACCTCTGTGCTTCAG-CCAAAAGC
* *
2188780 TGGA-ACCTCTGTGCA--TTAGAATGATTGAGCACCTCTGTGCTACAATC
1 T-GACACCTCTGTGCAGCTAAG-ATGATTGAGCACCTCTGTGCTTCAATC
2188827 TAAAATCAAG
Statistics
Matches: 135, Mismatches: 18, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
108 4 0.03
109 52 0.39
110 15 0.11
111 45 0.33
112 19 0.14
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (109 bp):
TGACACCTCTGTGCAGCTAAGATGATTGAGCACCTCTGTGCTTCAATCGAGAACTGACACCTCTG
TGCATAAAAAAATGACGGAGCACCTCTGTGCTTCAGCCAAAAGC
Found at i:2188868 original size:48 final size:48
Alignment explanation
Indices: 2188812--2188962 Score: 124
Period size: 48 Copynumber: 3.0 Consensus size: 48
2188802 GATTGAGCAC
*
2188812 CTCTGTGCTACAATCTAAAATCAAGCACCTCCGTGCTTTTACAAATGA
1 CTCTGTGCTACAATCTAAAATCAAGCACCTCTGTGCTTTTACAAATGA
** * *** * *
2188860 CTCTGTGCTTTAGTCTAAAATTTGGCACCTCTGTG-TATTAGAATGATTGAGCA
1 CTCTGTGCTACAATCTAAAATCAAGCACCTCTGTGCTTTTACAA--A-T--G-A
* * *
2188913 CCTCTGTGCTACAATCAAAAATCAAGAACCTTTGTGCTTTTACAAATGA
1 -CTCTGTGCTACAATCTAAAATCAAGCACCTCTGTGCTTTTACAAATGA
2188962 C
1 C
2188963 CGAGCACCTC
Statistics
Matches: 75, Mismatches: 20, Indels: 16
0.68 0.18 0.14
Matches are distributed among these distances:
47 6 0.08
48 29 0.39
49 2 0.03
50 2 0.03
52 2 0.03
53 2 0.03
54 26 0.35
55 6 0.08
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (48 bp):
CTCTGTGCTACAATCTAAAATCAAGCACCTCTGTGCTTTTACAAATGA
Found at i:2188890 original size:102 final size:102
Alignment explanation
Indices: 2188758--2188962 Score: 338
Period size: 102 Copynumber: 2.0 Consensus size: 102
2188748 GACGGAGCAC
2188758 CTCTGTGCTTCAGTCTAAAATCTGGAACCTCTGTGCATTAGAATGATTGAGCACCTCTGTGCTAC
1 CTCTGTGCTTCAGTCTAAAATCTGGAACCTCTGTGCATTAGAATGATTGAGCACCTCTGTGCTAC
* *
2188823 AATCTAAAATCAAGCACCTCCGTGCTTTTACAAATGA
66 AATCAAAAATCAAGAACCTCCGTGCTTTTACAAATGA
* * * *
2188860 CTCTGTGCTTTAGTCTAAAATTTGGCACCTCTGTGTATTAGAATGATTGAGCACCTCTGTGCTAC
1 CTCTGTGCTTCAGTCTAAAATCTGGAACCTCTGTGCATTAGAATGATTGAGCACCTCTGTGCTAC
**
2188925 AATCAAAAATCAAGAACCTTTGTGCTTTTACAAATGA
66 AATCAAAAATCAAGAACCTCCGTGCTTTTACAAATGA
2188962 C
1 C
2188963 CGAGCACCTC
Statistics
Matches: 95, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
102 95 1.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (102 bp):
CTCTGTGCTTCAGTCTAAAATCTGGAACCTCTGTGCATTAGAATGATTGAGCACCTCTGTGCTAC
AATCAAAAATCAAGAACCTCCGTGCTTTTACAAATGA
Found at i:2190220 original size:3 final size:3
Alignment explanation
Indices: 2190212--2190249 Score: 58
Period size: 3 Copynumber: 12.3 Consensus size: 3
2190202 AAGTTTATAA
*
2190212 ATT ATT ATT ATTT ATT ATT ATT TTT ATT ATT ATT ATT A
1 ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT A
2190250 ATAATTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:2190240 original size:25 final size:24
Alignment explanation
Indices: 2190212--2190271 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 24
2190202 AAGTTTATAA
*
2190212 ATTATTATTATTTATTATTATTTTT
1 ATTATTATTATTTATAATT-TTTTT
*
2190237 ATTATTATTATTAATAATTTTTTT
1 ATTATTATTATTTATAATTTTTTT
2190261 ATT-TTA-TATTT
1 ATTATTATTATTT
2190272 TGTAGGCCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
22 4 0.12
23 3 0.09
24 8 0.25
25 17 0.53
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (24 bp):
ATTATTATTATTTATAATTTTTTT
Found at i:2190757 original size:21 final size:21
Alignment explanation
Indices: 2190728--2190801 Score: 55
Period size: 21 Copynumber: 3.6 Consensus size: 21
2190718 AGGGGATTCG
2190728 AAAAA-AAAAGAAATAGTGAA
1 AAAAAGAAAAGAAATAGTGAA
* * *
2190748 AAAAAGAAAATAAAGAAAT-AA
1 AAAAAGAAAAGAAA-TAGTGAA
* *
2190769 AAAAAGAAAACAAAT-GAGAA
1 AAAAAGAAAAGAAATAGTGAA
*
2190789 AAACAAAAAAAGA
1 AAA-AAGAAAAGA
2190802 GAAAAATATT
Statistics
Matches: 41, Mismatches: 9, Indels: 7
0.72 0.16 0.12
Matches are distributed among these distances:
20 10 0.24
21 29 0.71
22 2 0.05
ACGTcount: A:0.78, C:0.03, G:0.12, T:0.07
Consensus pattern (21 bp):
AAAAAGAAAAGAAATAGTGAA
Found at i:2190805 original size:16 final size:18
Alignment explanation
Indices: 2190769--2190807 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
2190759 AAAGAAATAA
*
2190769 AAAAAGAAAACAAATGAG
1 AAAAACAAAACAAATGAG
2190787 AAAAACAAAA-AAA-GAG
1 AAAAACAAAACAAATGAG
2190803 AAAAA
1 AAAAA
2190808 TATTTTACCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 8 0.40
17 3 0.15
18 9 0.45
ACGTcount: A:0.79, C:0.05, G:0.13, T:0.03
Consensus pattern (18 bp):
AAAAACAAAACAAATGAG
Found at i:2193845 original size:22 final size:21
Alignment explanation
Indices: 2193820--2193862 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
2193810 TTTATTATAT
**
2193820 ATATTTATGAATATATATAAAA
1 ATATTTAACAATATA-ATAAAA
2193842 ATATTTAACAATATAATAAAA
1 ATATTTAACAATATAATAAAA
2193863 GAAAAATTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.37
Consensus pattern (21 bp):
ATATTTAACAATATAATAAAA
Found at i:2193912 original size:19 final size:19
Alignment explanation
Indices: 2193891--2193926 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
2193881 AATATATTTA
2193891 AAAACA-ATAAAATAAATT
1 AAAACATATAAAATAAATT
2193909 AAAACATATAAAATAAAT
1 AAAACATATAAAATAAAT
2193927 GACTAAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.72, C:0.06, G:0.00, T:0.22
Consensus pattern (19 bp):
AAAACATATAAAATAAATT
Found at i:2194801 original size:20 final size:18
Alignment explanation
Indices: 2194762--2194798 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
2194752 TAGTTGTTGT
2194762 TGTTTTTTTTTCTTTCTC
1 TGTTTTTTTTTCTTTCTC
2194780 TGTTTTTTTTTCTTTCTC
1 TGTTTTTTTTTCTTTCTC
2194798 T
1 T
2194799 CTGGTTCTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.00, C:0.16, G:0.05, T:0.78
Consensus pattern (18 bp):
TGTTTTTTTTTCTTTCTC
Found at i:2195314 original size:3 final size:3
Alignment explanation
Indices: 2195306--2195382 Score: 136
Period size: 3 Copynumber: 25.7 Consensus size: 3
2195296 AATATATATT
2195306 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
2195354 TAG TAA TAA TGA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
2195383 TGGATAAAAA
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 70 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:2195849 original size:113 final size:113
Alignment explanation
Indices: 2195702--2196362 Score: 1117
Period size: 113 Copynumber: 5.9 Consensus size: 113
2195692 AGTATCAAAC
*
2195702 AAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * *
2195767 ATGAACTTTCTCTGGAAAGGCTGATCCATCAATTGATGAATTCAGGTA
66 ATGAACTTTCTCTGGAAAGGATGATCCATCAATTGACGAATTCAAGTA
*
2195815 AAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* *
2195880 ATGAACTTTCTCTGGAAATGATGATCCATCAATTGACGAATTCATGTA
66 ATGAACTTTCTCTGGAAAGGATGATCCATCAATTGACGAATTCAAGTA
2195928 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * * **
2195993 ATGAACTTTTTCTGGAAAAGCTGATCCATCAATTGACGAATTCAAACA
66 ATGAACTTTCTCTGGAAAGGATGATCCATCAATTGACGAATTCAAGTA
* *
2196041 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCATTCTTCAGATGATTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
*
2196106 ATGAACTTTCTCTGGAAAGGATGATCCATCAATTGACGAATTCATGTA
66 ATGAACTTTCTCTGGAAAGGATGATCCATCAATTGACGAATTCAAGTA
*
2196154 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGATTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
**
2196219 ATGAACTTTCTCTGGAAAGGATGATCCATCAATTGACGAATTCAAACA
66 ATGAACTTTCTCTGGAAAGGATGATCCATCAATTGACGAATTCAAGTA
2196267 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * * *
2196332 ATGAAC-TTATCTGGCAATGTTGATCCATCAA
66 ATGAACTTTCTCTGGAAAGGATGATCCATCAA
2196363 GTGATGGATT
Statistics
Matches: 518, Mismatches: 30, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
112 21 0.04
113 497 0.96
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.38
Consensus pattern (113 bp):
AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
ATGAACTTTCTCTGGAAAGGATGATCCATCAATTGACGAATTCAAGTA
Found at i:2197189 original size:83 final size:83
Alignment explanation
Indices: 2197014--2197423 Score: 694
Period size: 83 Copynumber: 4.9 Consensus size: 83
2197004 GTTCTTACCA
*
2197014 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCACATTCATCTTCTAAAT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG-GCACATTCATCTTCCAAAT
*
2197079 TCAATGATTGATTCTGTCC
65 TCAATGATTGATTCGGTCC
** *
2197098 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAACACATTCTTCTTCCAAATT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCACATTCATCTTCCAAATT
*
2197163 CAATGATTGATTCTGTCC
66 CAATGATTGATTCGGTCC
* *
2197181 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCCTAATT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCACATTCATCTTCCAAATT
2197246 CAATGATTGATTCGGTCC
66 CAATGATTGATTCGGTCC
* *
2197264 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCCTAATT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCACATTCATCTTCCAAATT
2197329 CAATGATTGATTCGGTCC
66 CAATGATTGATTCGGTCC
* * *
2197347 AACCAGATCAGATAACTCAAAGAACATTTCCAGAAGATGCTATTGACACATTCTTCTTCCAAATT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCACATTCATCTTCCAAATT
2197412 CAATGATTGATT
66 CAATGATTGATT
2197424 AAGATATCAC
Statistics
Matches: 311, Mismatches: 15, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
83 267 0.86
84 44 0.14
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.29
Consensus pattern (83 bp):
AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCACATTCATCTTCCAAATT
CAATGATTGATTCGGTCC
Found at i:2198545 original size:1 final size:1
Alignment explanation
Indices: 2198541--2198651 Score: 69
Period size: 1 Copynumber: 111.0 Consensus size: 1
2198531 CTTGACCCCC
* * * * ** * * * *
2198541 TTTTTCTTTTTTTTCTTCTTCTTTTTTTTCCTTTTTTTTTCTTTCTTTTTTTTCTTCTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * * *
2198606 TTCTTCTTTTTTTTCTTCTTTTTTTTCTTTTTTTTTCTTTCTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
2198652 CGTCAAGCAT
Statistics
Matches: 78, Mismatches: 32, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
1 78 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (1 bp):
T
Found at i:2198565 original size:12 final size:12
Alignment explanation
Indices: 2198544--2198652 Score: 98
Period size: 12 Copynumber: 9.0 Consensus size: 12
2198534 GACCCCCTTT
*
2198544 TTCTTTTTTTTC
1 TTCTTCTTTTTC
*
2198556 TTCTTCTTTTTT
1 TTCTTCTTTTTC
*
2198568 TTCCTTTTTTTTTC
1 TT-C-TTCTTTTTC
*
2198582 TTTCTTTTTTTTC
1 -TTCTTCTTTTTC
*
2198595 TTCTT-TTTTTT
1 TTCTTCTTTTTC
*
2198606 TTCTTCTTTTTT
1 TTCTTCTTTTTC
*
2198618 TTCTTCTTTTTT
1 TTCTTCTTTTTC
2198630 TTCTT-TTTTT-
1 TTCTTCTTTTTC
2198640 TTCTTTCTTTTTC
1 TTC-TTCTTTTTC
2198653 GTCAAGCATA
Statistics
Matches: 85, Mismatches: 5, Indels: 13
0.83 0.05 0.13
Matches are distributed among these distances:
10 3 0.04
11 17 0.20
12 45 0.53
13 10 0.12
14 8 0.09
15 2 0.02
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (12 bp):
TTCTTCTTTTTC
Found at i:2198567 original size:23 final size:24
Alignment explanation
Indices: 2198541--2198652 Score: 135
Period size: 24 Copynumber: 4.6 Consensus size: 24
2198531 CTTGACCCCC
2198541 TTTTTCTTTTTTTTCTTCTTCTTT
1 TTTTTCTTTTTTTTCTTCTTCTTT
2198565 TTTTTCCTTTTTTTTTCTTTCTT-TTT
1 TTTTT-C-TTTTTTTTC-TTCTTCTTT
2198591 TTTCTTCTTTTTTTT-TTCTTCTTT
1 TTT-TTCTTTTTTTTCTTCTTCTTT
2198615 TTTTTCTTCTTTTTT-TTC-T-TTT
1 TTTTTCTT-TTTTTTCTTCTTCTTT
2198637 TTTTTCTTTCTTTTTC
1 TTTTTCTTT-TTTTTC
2198653 GTCAAGCATA
Statistics
Matches: 80, Mismatches: 0, Indels: 17
0.82 0.00 0.18
Matches are distributed among these distances:
21 1 0.01
22 16 0.20
23 11 0.14
24 20 0.25
25 9 0.11
26 16 0.20
27 7 0.09
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (24 bp):
TTTTTCTTTTTTTTCTTCTTCTTT
Found at i:2209311 original size:11 final size:11
Alignment explanation
Indices: 2209297--2209329 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
2209287 AATATTATAA
*
2209297 AAATAATAAAT
1 AAATAAAAAAT
2209308 AAATAAAAAAT
1 AAATAAAAAAT
2209319 AAATAAAAAAT
1 AAATAAAAAAT
2209330 TTGAAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (11 bp):
AAATAAAAAAT
Found at i:2209316 original size:18 final size:18
Alignment explanation
Indices: 2209273--2209329 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 18
2209263 CTTGCAAAGA
*
2209273 AAATAAAACAT-ATAAAT
1 AAATAAAAAATAATAAAT
*
2209290 -ATTATAAAAATAATAAAT
1 AAATA-AAAAATAATAAAT
2209308 AAATAAAAAATAAATAAA-
1 AAATAAAAAAT-AATAAAT
2209326 AAAT
1 AAAT
2209330 TTGAAAAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
16 3 0.09
17 5 0.15
18 16 0.48
19 9 0.27
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.25
Consensus pattern (18 bp):
AAATAAAAAATAATAAAT
Found at i:2210035 original size:22 final size:21
Alignment explanation
Indices: 2210010--2210052 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
2210000 TTTATTATAT
**
2210010 ATATTTATGAATATATATAAAA
1 ATATTTAACAATATA-ATAAAA
2210032 ATATTTAACAATATAATAAAA
1 ATATTTAACAATATAATAAAA
2210053 GAAAAATTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.37
Consensus pattern (21 bp):
ATATTTAACAATATAATAAAA
Found at i:2210102 original size:19 final size:19
Alignment explanation
Indices: 2210081--2210116 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
2210071 AATATATTTA
2210081 AAAACA-ATAAAATAAATT
1 AAAACATATAAAATAAATT
2210099 AAAACATATAAAATAAAT
1 AAAACATATAAAATAAAT
2210117 GACTAAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.72, C:0.06, G:0.00, T:0.22
Consensus pattern (19 bp):
AAAACATATAAAATAAATT
Found at i:2210980 original size:21 final size:19
Alignment explanation
Indices: 2210955--2210991 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
2210945 AGTTGTTGTT
2210955 GTTTTTTTTTCTTTCTCTG
1 GTTTTTTTTTCTTTCTCTG
*
2210974 TTTTTTTTTTCTTTCTCT
1 GTTTTTTTTTCTTTCTCT
2210992 CTGGTTCTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.00, C:0.16, G:0.05, T:0.78
Consensus pattern (19 bp):
GTTTTTTTTTCTTTCTCTG
Found at i:2211507 original size:3 final size:3
Alignment explanation
Indices: 2211499--2211575 Score: 127
Period size: 3 Copynumber: 25.7 Consensus size: 3
2211489 AATATATATT
*
2211499 TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
2211547 TAG TAA TAA TGA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
2211576 TGGATAAAAA
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 68 1.00
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:2212268 original size:216 final size:216
Alignment explanation
Indices: 2211894--2212329 Score: 836
Period size: 216 Copynumber: 2.0 Consensus size: 216
2211884 CTGAGTTTGT
*
2211894 AACGACTCGTGCTACTCCACAACTAATCATTTCACTCGAGAGGCTTCAAAGCCACCAAGCAAGTT
1 AACGACTCGTGCTACTCCACAACTAATCATTTCACCCGAGAGGCTTCAAAGCCACCAAGCAAGTT
*
2211959 TACATGTCTCTAAGACTCAAGCAACCATGACAAATCCTCAGTGTATCCCCATTGATCATAGCAAA
66 TACATGTCTCTAAGACTCAAGCAACCATGACAAATCCTCAGTGTAGCCCCATTGATCATAGCAAA
2212024 TTTGATTATGATCAAATGAAAATAGCTAGGACTGAGATACCCAAAAGCTTGAAGTCCTGGTGCAA
131 TTTGATTATGATCAAATGAAAATAGCTAGGACTGAGATACCCAAAAGCTTGAAGTCCTGGTGCAA
2212089 AGACTATCTCAAAGGAATGAG
196 AGACTATCTCAAAGGAATGAG
*
2212110 AACGACTCGTGCTACTCCACAACTAATCATTTCACCCGAGAGGCTTTAAAGCCACCAAGCAAGTT
1 AACGACTCGTGCTACTCCACAACTAATCATTTCACCCGAGAGGCTTCAAAGCCACCAAGCAAGTT
*
2212175 TACATGTCTCTAAGACTCAAGTAACCATGACAAATCCTCAGTGTAGCCCCATTGATCATAGCAAA
66 TACATGTCTCTAAGACTCAAGCAACCATGACAAATCCTCAGTGTAGCCCCATTGATCATAGCAAA
2212240 TTTGATTATGATCAAATGAAAATAGCTAGGACTGAGATACCCAAAAGCTTGAAGTCCTGGTGCAA
131 TTTGATTATGATCAAATGAAAATAGCTAGGACTGAGATACCCAAAAGCTTGAAGTCCTGGTGCAA
2212305 AGACTATCTCAAAGGAATGAG
196 AGACTATCTCAAAGGAATGAG
2212326 AACG
1 AACG
2212330 CATAGCTCCC
Statistics
Matches: 216, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
216 216 1.00
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.23
Consensus pattern (216 bp):
AACGACTCGTGCTACTCCACAACTAATCATTTCACCCGAGAGGCTTCAAAGCCACCAAGCAAGTT
TACATGTCTCTAAGACTCAAGCAACCATGACAAATCCTCAGTGTAGCCCCATTGATCATAGCAAA
TTTGATTATGATCAAATGAAAATAGCTAGGACTGAGATACCCAAAAGCTTGAAGTCCTGGTGCAA
AGACTATCTCAAAGGAATGAG
Found at i:2219837 original size:20 final size:20
Alignment explanation
Indices: 2219797--2219838 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
2219787 AATATCCTAT
* * *
2219797 TGTTTTTTTTTTTGATTAGA
1 TGTTTTTTGTTTTCATCAGA
2219817 TGTTTTTTGTTTTCATCAGA
1 TGTTTTTTGTTTTCATCAGA
2219837 TG
1 TG
2219839 GGTAGCGTCG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.14, C:0.05, G:0.17, T:0.64
Consensus pattern (20 bp):
TGTTTTTTGTTTTCATCAGA
Found at i:2220454 original size:23 final size:23
Alignment explanation
Indices: 2220428--2220475 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
2220418 TTCAATCGGG
2220428 ATTGAATTCAAGTTGAACTGATT
1 ATTGAATTCAAGTTGAACTGATT
2220451 ATTGAATTCAAGTTGAACTGATT
1 ATTGAATTCAAGTTGAACTGATT
2220474 AT
1 AT
2220476 CCTCAAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.35, C:0.08, G:0.17, T:0.40
Consensus pattern (23 bp):
ATTGAATTCAAGTTGAACTGATT
Found at i:2221728 original size:19 final size:20
Alignment explanation
Indices: 2221684--2221728 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
2221674 AGGTGTTGTT
* *
2221684 ATTTTTGGTGAAAAGATGTA
1 ATTTTTGGTAAAAAGAAGTA
*
2221704 AATTTTGGTAAAAAGAAG-A
1 ATTTTTGGTAAAAAGAAGTA
2221723 ATTTTT
1 ATTTTT
2221729 CTTATATTAT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (20 bp):
ATTTTTGGTAAAAAGAAGTA
Found at i:2245080 original size:21 final size:21
Alignment explanation
Indices: 2245055--2245097 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
2245045 TATATATCTT
2245055 AAGGTCATTTCATATACATAG
1 AAGGTCATTTCATATACATAG
*
2245076 AAGGTCATTTTATATACATAG
1 AAGGTCATTTCATATACATAG
2245097 A
1 A
2245098 CAAACACAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.35
Consensus pattern (21 bp):
AAGGTCATTTCATATACATAG
Found at i:2249684 original size:19 final size:19
Alignment explanation
Indices: 2249640--2249684 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
2249630 ACTTGATTAA
* *
2249640 ATATTTAAAATATATATAT
1 ATATTTTAAATATAAATAT
*
2249659 ATATTTTAAATTTAAATAT
1 ATATTTTAAATATAAATAT
*
2249678 TTATTTT
1 ATATTTT
2249685 TACATAGACC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
ATATTTTAAATATAAATAT
Found at i:2251988 original size:20 final size:20
Alignment explanation
Indices: 2251959--2252016 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
2251949 TTTGGTTCAC
2251959 GGAATATAAGATTACCAGTG
1 GGAATATAAGATTACCAGTG
* *
2251979 GGAATGTAAGATTACCAATG
1 GGAATATAAGATTACCAGTG
2251999 GGAATATAAGATTACCAG
1 GGAATATAAGATTACCAG
2252017 GGAATAGGAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.41, C:0.10, G:0.24, T:0.24
Consensus pattern (20 bp):
GGAATATAAGATTACCAGTG
Found at i:2253370 original size:16 final size:16
Alignment explanation
Indices: 2253349--2253379 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
2253339 AATGGAATTT
*
2253349 TTTTATAAAATAAATA
1 TTTTATAAAAAAAATA
2253365 TTTTATAAAAAAAAT
1 TTTTATAAAAAAAAT
2253380 TATGGATGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
TTTTATAAAAAAAATA
Found at i:2257017 original size:25 final size:25
Alignment explanation
Indices: 2256988--2257069 Score: 157
Period size: 25 Copynumber: 3.3 Consensus size: 25
2256978 AGAAGGAAGA
2256988 AGGAAGAATGAATAAGAAAGAAAGG
1 AGGAAGAATGAATAAGAAAGAAAGG
2257013 AGGAAGAATGAATAAGAAAGAAAGG
1 AGGAAGAATGAATAAGAAAGAAAGG
2257038 AGGAAGAATGAATAAGAAAGAAA-G
1 AGGAAGAATGAATAAGAAAGAAAGG
2257062 AGGAAGAA
1 AGGAAGAA
2257070 GCAGAACTGG
Statistics
Matches: 57, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
24 9 0.16
25 48 0.84
ACGTcount: A:0.61, C:0.00, G:0.32, T:0.07
Consensus pattern (25 bp):
AGGAAGAATGAATAAGAAAGAAAGG
Found at i:2257471 original size:14 final size:14
Alignment explanation
Indices: 2257439--2257465 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
2257429 TAAATATTGT
2257439 AAAATAATTTTTAA
1 AAAATAATTTTTAA
2257453 AAAATAATTTTTA
1 AAAATAATTTTTA
2257466 GGAAATTACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
AAAATAATTTTTAA
Found at i:2259774 original size:37 final size:38
Alignment explanation
Indices: 2259695--2259781 Score: 122
Period size: 37 Copynumber: 2.3 Consensus size: 38
2259685 TTTACCCTAA
*
2259695 ACCCGAACCCGACCCGAATACCATACTTAAAAAAAACCG
1 ACCCG-ACCCGACCCGAATACCACACTTAAAAAAAACCG
* * *
2259734 ACCCGACTCGACCCGAATATCACACTT-AAAAAACCCG
1 ACCCGACCCGACCCGAATACCACACTTAAAAAAAACCG
2259771 ACCCGACCCGA
1 ACCCGACCCGA
2259782 ACAAAATAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
37 19 0.44
38 19 0.44
39 5 0.12
ACGTcount: A:0.39, C:0.39, G:0.11, T:0.10
Consensus pattern (38 bp):
ACCCGACCCGACCCGAATACCACACTTAAAAAAAACCG
Found at i:2259778 original size:32 final size:33
Alignment explanation
Indices: 2259693--2259782 Score: 92
Period size: 38 Copynumber: 2.6 Consensus size: 33
2259683 TTTTTACCCT
*
2259693 AAACCCGAACCCGACCCGAATACCATACTTAAAAAA
1 AAACCCG-ACCCGACCCGAATACCACACTT--AAAA
* *
2259729 AACCGACCCGACTCGACCCGAATATCACACTT-AAA
1 AA---ACCCGACCCGACCCGAATACCACACTTAAAA
2259764 AAACCCGACCCGACCCGAA
1 AAACCCGACCCGACCCGAA
2259783 CAAAATAAAG
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
32 16 0.34
35 5 0.11
36 2 0.04
38 19 0.40
39 5 0.11
ACGTcount: A:0.41, C:0.38, G:0.11, T:0.10
Consensus pattern (33 bp):
AAACCCGACCCGACCCGAATACCACACTTAAAA
Found at i:2259822 original size:249 final size:254
Alignment explanation
Indices: 2259495--2259993 Score: 787
Period size: 253 Copynumber: 2.0 Consensus size: 254
2259485 CTTAAACCCA
* * *
2259495 ACCCGAATATCACACTTAAAAAACCCCGACCCGACCCGAATAAAATAAAGTTTCATCTGGCCGAC
1 ACCCGAATATCACACTTAAAAAACCCCGACCCGACCCGAACAAAATAAAGTTTCATCCGCCCGAC
* *
2259560 CCGAATATATGAATTAGAAA-T-CCGACCCGACCCGAAATAATAAAAAAATATTTTTATTTAATA
66 CCGAATATATGAATTAGAAACTACCGACCCGACCCAAAACAAT-AAAAAATATTTTTATTTAATA
2259623 AAAACAGTGACTTAATCCGACCCGACCCGAATTATATATATTTTCAGGTCGGTCTGGTTTTTTTT
130 AAAACAGTGACTTAATCCGACCCGACCCGAATTATATATATTTTCAGGTCGGTCTGGTTTTTTTT
*
2259688 -ACCCTAAACCCG-A-AC-CCGACCCGAATACCATACTTAAAAAAAACCGACCCGACTCG
195 CACCCTAAACCCGAACACACCGACCCGAATACCACACTTAAAAAAAACCGACCCGACTCG
*
2259744 ACCCGAATATCACACTTAAAAAA-CCCGACCCGACCCGAACAAAATAAAGTTTCATCCGACCCTA
1 ACCCGAATATCACACTTAAAAAACCCCGACCCGACCCGAACAAAATAAAGTTTCATCCG-CCCGA
2259808 CCCGAATATATGAATTAGAAATCTAACCCGACCCGACCCAAAACAATAAAAAATATTTTTATTTA
65 CCCGAATATATGAATTAGAAA-CT-A-CCGACCCGACCCAAAACAATAAAAAATATTTTTATTTA
* *
2259873 ATAAAAACAGTGACTTAATCCGACCCGACCTGAATTATATATATTTTCGGGTCGGTCTGGTTTTT
127 ATAAAAACAGTGACTTAATCCGACCCGACCCGAATTATATATATTTTCAGGTCGGTCTGGTTTTT
* *
2259938 TTTCACCCTAAACCCGAACACGATCCGACCCGAATATCACACTTAAAAAAACCCGA
192 TTTCACCCTAAACCCGAACAC-A-CCGACCCGAATACCACACTTAAAAAAAACCGA
2259994 TCCAACCCGA
Statistics
Matches: 227, Mismatches: 11, Indels: 14
0.90 0.04 0.06
Matches are distributed among these distances:
248 33 0.15
249 47 0.21
251 1 0.00
253 84 0.37
254 30 0.13
255 1 0.00
256 2 0.01
259 29 0.13
ACGTcount: A:0.38, C:0.27, G:0.12, T:0.24
Consensus pattern (254 bp):
ACCCGAATATCACACTTAAAAAACCCCGACCCGACCCGAACAAAATAAAGTTTCATCCGCCCGAC
CCGAATATATGAATTAGAAACTACCGACCCGACCCAAAACAATAAAAAATATTTTTATTTAATAA
AAACAGTGACTTAATCCGACCCGACCCGAATTATATATATTTTCAGGTCGGTCTGGTTTTTTTTC
ACCCTAAACCCGAACACACCGACCCGAATACCACACTTAAAAAAAACCGACCCGACTCG
Found at i:2260025 original size:253 final size:245
Alignment explanation
Indices: 2259489--2260043 Score: 706
Period size: 253 Copynumber: 2.2 Consensus size: 245
2259479 TTTCACCTTA
* * * *
2259489 AACCCAACCCGAATATCACACTTAAAAAACCCCGACCCGACCCGAATAAAATAAAGTTTCATCTG
1 AACCCGACCCGAAAATCAAACTT--AAAA-CCCGACCCGACCCGAA-AAAATAAAGTTTCATCCG
* * *
2259554 GCCGACCCGAATATATGAATTAGAAATCCGACCCGACCCGAAATAATAAAAAAATATTTTTATTT
62 CCCGACCCGAATATATGAATTAGAAATCCGACCCGACCCAAAACAATAAAAAAATATTTTTATTT
2259619 AATAAAAACAGTGACTTAATCCGACCCGACCCGAATTATATATATTTTCAGGTCGGTCTGGTTTT
127 AATAAAAACAGTGACTTAATCCGACCCGACCCGAATTATATATATTTTCAGGTCGGTCTGGTTTT
*
2259684 TTTTACCCTAAACCCGAACCCGACCCGAATACCATACTTAAAAAAAACCGACCC
192 TTTTACCCTAAACCCGAACCCGACCCGAATACCACACTTAAAAAAAACCGACCC
* * * *
2259738 GACTCGACCCGAATATCACACTTAAAAAACCCGACCCGACCCGAACAAAATAAAGTTTCATCCGA
1 AACCCGACCCGAAAATCAAACTT--AAAACCCGACCCGACCCGAA-AAAATAAAGTTTCATCCG-
*
2259803 CCCTACCCGAATATATGAATTAGAAATCTAACCCGACCCGACCCAAAACAAT-AAAAAATATTTT
62 CCCGACCCGAATATATGAATTAGAAA--T---CCGACCCGACCCAAAACAATAAAAAAATATTTT
* *
2259867 TATTTAATAAAAACAGTGACTTAATCCGACCCGACCTGAATTATATATATTTTCGGGTCGGTCTG
122 TATTTAATAAAAACAGTGACTTAATCCGACCCGACCCGAATTATATATATTTTCAGGTCGGTCTG
* * *
2259932 GTTTTTTTTCACCCTAAACCCGAACACGATCCGACCCGAATATCACACTTAAAAAAACCCGATCC
187 GTTTTTTTT-ACCCTAAACCCG-A-AC---CCGACCCGAATACCACACTTAAAAAAAACCGACCC
* ** *
2259997 AACCCGA-CC-AAAAT-AAAGTT-TCACCCGACCCGACCCGAAATAATAAA
1 AACCCGACCCGAAAATCAAACTTAAAACCCGACCCGACCCGAAAAAATAAA
2260044 AAAATATTTT
Statistics
Matches: 271, Mismatches: 23, Indels: 21
0.86 0.07 0.07
Matches are distributed among these distances:
248 33 0.12
249 50 0.18
251 1 0.00
252 7 0.03
253 101 0.37
254 30 0.11
255 1 0.00
256 6 0.02
257 4 0.01
258 2 0.01
259 36 0.13
ACGTcount: A:0.38, C:0.28, G:0.12, T:0.23
Consensus pattern (245 bp):
AACCCGACCCGAAAATCAAACTTAAAACCCGACCCGACCCGAAAAAATAAAGTTTCATCCGCCCG
ACCCGAATATATGAATTAGAAATCCGACCCGACCCAAAACAATAAAAAAATATTTTTATTTAATA
AAAACAGTGACTTAATCCGACCCGACCCGAATTATATATATTTTCAGGTCGGTCTGGTTTTTTTT
ACCCTAAACCCGAACCCGACCCGAATACCACACTTAAAAAAAACCGACCC
Found at i:2261746 original size:33 final size:34
Alignment explanation
Indices: 2261683--2261763 Score: 146
Period size: 33 Copynumber: 2.4 Consensus size: 34
2261673 AGTATAGTAC
2261683 CAATTATCATCTTTCTTTCTTTTTTTCTGATTAAT
1 CAATTATCATCTTTCTTTC-TTTTTTCTGATTAAT
2261718 CAATTATCATCTTTCTTTC-TTTTTCTGATTAAT
1 CAATTATCATCTTTCTTTCTTTTTTCTGATTAAT
2261751 CAATTATCATCTT
1 CAATTATCATCTT
2261764 ATTAAATGTA
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
33 27 0.59
35 19 0.41
ACGTcount: A:0.22, C:0.19, G:0.02, T:0.57
Consensus pattern (34 bp):
CAATTATCATCTTTCTTTCTTTTTTCTGATTAAT
Found at i:2262099 original size:39 final size:39
Alignment explanation
Indices: 2262045--2262122 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
2262035 TATATTATAC
* * *
2262045 TACCTTTGTCCTATTAAAAATGTTCCTTATTGATTTTTT
1 TACCTTTGTCCTATTAAAAATGTCCCTGATTAATTTTTT
2262084 TACCTTTGTCCTATTAAAAATGTCCCTGATTAATTTTTT
1 TACCTTTGTCCTATTAAAAATGTCCCTGATTAATTTTTT
2262123 AAAATTCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.24, C:0.17, G:0.08, T:0.51
Consensus pattern (39 bp):
TACCTTTGTCCTATTAAAAATGTCCCTGATTAATTTTTT
Found at i:2265672 original size:44 final size:44
Alignment explanation
Indices: 2265605--2265993 Score: 282
Period size: 44 Copynumber: 8.8 Consensus size: 44
2265595 TGTATAATTA
* * *
2265605 AGATTG-AAAAATTTAGGGGCCTCAATTATAAAGGTAGAAATTG
1 AGATTGAAAAAACTTAGGGACCTCAATTATAAAGGTAGAAAGTG
* * * *
2265648 AGATCGAAAAAACTTATGGACCTCAATTATAAATGTATAAAGTG
1 AGATTGAAAAAACTTAGGGACCTCAATTATAAAGGTAGAAAGTG
* * *
2265692 AGATTGAAAAAACTCAGGGGA-CTCAATTATAAAGTTAACAAAGTG
1 AGATTGAAAAAACTTA-GGGACCTCAATTATAAAGGT-AGAAAGTG
* * **
2265737 AGATT-AAAAAAATAAGGGACCTCAATTATAAAGGTAGAATTTG
1 AGATTGAAAAAACTTAGGGACCTCAATTATAAAGGTAGAAAGTG
* * * *
2265780 AGATTAAAAAAACTTAGGGGCATCAATTGTAAAGGTAGAAAAGGTACAAGTG
1 AGATTGAAAAAACTTAGGGACCTCAATTATAAAGGT-----A-G-A-AAGTG
* * *
2265832 AAATTGAAAAAAACTTAAGGG-TCTCAATTATAAAGTTA-AAATGTG
1 AGATTG-AAAAAACTT-AGGGACCTCAATTATAAAGGTAGAAA-GTG
* * *
2265877 AGATT-AAAAAA-TCAGGGGCCTCAATTATAAAGGTA-AAAGAGG
1 AGATTGAAAAAACTTAGGGACCTCAATTATAAAGGTAGAAAG-TG
* * * * *
2265919 AAATT-AAAAAATTTAGAGACTTCAATTATAAA-ATA-AAAGGTG
1 AGATTGAAAAAACTTAGGGACCTCAATTATAAAGGTAGAAA-GTG
2265961 AGATTGAATAAAA-TTA-GGACCTCAATTATAAAG
1 AGATTGAA-AAAACTTAGGGACCTCAATTATAAAG
2265994 ACAATTTTTT
Statistics
Matches: 276, Mismatches: 47, Indels: 46
0.75 0.13 0.12
Matches are distributed among these distances:
41 5 0.02
42 54 0.20
43 47 0.17
44 111 0.40
45 23 0.08
48 1 0.00
49 1 0.00
50 1 0.00
51 1 0.00
52 7 0.03
53 21 0.08
54 4 0.01
ACGTcount: A:0.48, C:0.08, G:0.19, T:0.25
Consensus pattern (44 bp):
AGATTGAAAAAACTTAGGGACCTCAATTATAAAGGTAGAAAGTG
Found at i:2265760 original size:132 final size:136
Alignment explanation
Indices: 2265605--2265911 Score: 365
Period size: 132 Copynumber: 2.3 Consensus size: 136
2265595 TGTATAATTA
* * * * *
2265605 AGATTGAAAAATTTAGGGGCCTCAATTATAAAGGTAGAAATTGAGATCGAAAAAACTTATGGACC
1 AGATT-AAAAAATAAGGGGCCTCAATTATAAAGGTAGAAATTGAGATCAAAAAAACTTAGGGACA
* * *
2265670 TCAATTATAAA-T-G-TA-TA-AAGTGAGATTG-AAAAAACTCAGGGGACTCAATTATAAAGTTA
65 TCAATTATAAAGTAGAAAGTACAAGTGAAATTGAAAAAAACTCAAGGGACTCAATTATAAAGTTA
2265729 ACAAAGTG
130 A-AAAGTG
* * * *
2265737 AGATTAAAAAAATAAGGGACCTCAATTATAAAGGTAGAATTTGAGATTAAAAAAACTTAGGGGCA
1 AGATT-AAAAAATAAGGGGCCTCAATTATAAAGGTAGAAATTGAGATCAAAAAAACTTAGGGACA
* * *
2265802 TCAATTGTAAAGGTAGAAAAGGTACAAGTGAAATTGAAAAAAACTTAAGGGTCTCAATTATAAAG
65 TCAATTATAAA-GTAG-AAA-GTACAAGTGAAATTGAAAAAAACTCAAGGGACTCAATTATAAAG
*
2265867 TTAAAATGTG
127 TTAAAAAGTG
*
2265877 AGATTAAAAAATCAGGGGCCTCAATTATAAAGGTA
1 AGATTAAAAAATAAGGGGCCTCAATTATAAAGGTA
2265912 AAAGAGGAAA
Statistics
Matches: 147, Mismatches: 19, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
132 65 0.44
134 1 0.01
135 1 0.01
137 1 0.01
139 30 0.20
140 20 0.14
141 29 0.20
ACGTcount: A:0.46, C:0.09, G:0.20, T:0.25
Consensus pattern (136 bp):
AGATTAAAAAATAAGGGGCCTCAATTATAAAGGTAGAAATTGAGATCAAAAAAACTTAGGGACAT
CAATTATAAAGTAGAAAGTACAAGTGAAATTGAAAAAAACTCAAGGGACTCAATTATAAAGTTAA
AAAGTG
Found at i:2265901 original size:42 final size:41
Alignment explanation
Indices: 2265854--2265994 Score: 142
Period size: 42 Copynumber: 3.3 Consensus size: 41
2265844 ACTTAAGGGT
* * *
2265854 CTCAATTATAAAGTTAAAATGTGAGATTAAAAAATCAGGGGC
1 CTCAATTATAAAGATAAAA-GTGAGATTAAAAAATTAGGGAC
* * * *
2265896 CTCAATTATAAAGGTAAAAGAGGAAATTAAAAAATTTAGAGAC
1 CTCAATTATAAAGATAAAAG-TGAGATTAAAAAA-TTAGGGAC
*
2265939 TTCAATTATAAA-ATAAAAGGTGAGATTGAATAAAATTA-GGAC
1 CTCAATTATAAAGATAAAA-GTGAGATT-AA-AAAATTAGGGAC
2265981 CTCAATTATAAAGA
1 CTCAATTATAAAGA
2265995 CAATTTTTTT
Statistics
Matches: 81, Mismatches: 12, Indels: 11
0.78 0.12 0.11
Matches are distributed among these distances:
41 1 0.01
42 53 0.65
43 23 0.28
44 4 0.05
ACGTcount: A:0.50, C:0.08, G:0.16, T:0.26
Consensus pattern (41 bp):
CTCAATTATAAAGATAAAAGTGAGATTAAAAAATTAGGGAC
Found at i:2265975 original size:139 final size:138
Alignment explanation
Indices: 2265694--2265959 Score: 306
Period size: 139 Copynumber: 1.9 Consensus size: 138
2265684 ATAAAGTGAG
*
2265694 ATTGAAAAAACTCAGGGGACTCAATTATAAAGTTAACAAAGTGAGATTAAAAAAATAAGGGACCT
1 ATTGAAAAAACTCAAGGGACTCAATTATAAAGTTAACAAAGTGAGATTAAAAAAATAAGGGACCT
* *** * * * *
2265759 CAATTATAAAGGTAGAATTTGAGATTAAAAAAACTTAGGGGCATCAATTGTAAAGGTAGAAAAGG
66 CAATTATAAAGGTAAAAGAGGAAATTAAAAAAACTTAGAGACATCAATTATAAA-G-AGAAAAGG
* *
2265824 TACAAGTGAA
129 TACAAATAAA
* * * * *
2265834 ATTGAAAAAAACTTAAGGGTCTCAATTATAAAGTTAA-AATGTGAGATT-AAAAAATCAGGGGCC
1 ATTG-AAAAAACTCAAGGGACTCAATTATAAAGTTAACAAAGTGAGATTAAAAAAATAAGGGACC
* * *
2265897 TCAATTATAAAGGTAAAAGAGGAAATT-AAAAAATTTAGAGACTTCAATTATAAA-ATAAAAGGT
65 TCAATTATAAAGGTAAAAGAGGAAATTAAAAAAACTTAGAGACATCAATTATAAAGAGAAAAGGT
2265960 GAGATTGAAT
Statistics
Matches: 108, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
135 8 0.07
138 22 0.20
139 35 0.32
140 14 0.13
141 29 0.27
ACGTcount: A:0.49, C:0.08, G:0.19, T:0.24
Consensus pattern (138 bp):
ATTGAAAAAACTCAAGGGACTCAATTATAAAGTTAACAAAGTGAGATTAAAAAAATAAGGGACCT
CAATTATAAAGGTAAAAGAGGAAATTAAAAAAACTTAGAGACATCAATTATAAAGAGAAAAGGTA
CAAATAAA
Found at i:2270969 original size:15 final size:14
Alignment explanation
Indices: 2270945--2270986 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
2270935 CCTCGGTAAG
*
2270945 TTTCTCTTCTTTCTT
1 TTTCTTTTCTTTC-T
2270960 TTTCTTTTCTTTCT
1 TTTCTTTTCTTTCT
2270974 TTTCTGTTTCTTT
1 TTTCT-TTTCTTT
2270987 GCTGCGTTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 6 0.24
15 19 0.76
ACGTcount: A:0.00, C:0.21, G:0.02, T:0.76
Consensus pattern (14 bp):
TTTCTTTTCTTTCT
Found at i:2270977 original size:20 final size:20
Alignment explanation
Indices: 2270945--2270986 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
2270935 CCTCGGTAAG
*
2270945 TTTCTCTTCTTTCTTTTTCT
1 TTTCTCTTCTTTCTGTTTCT
2270965 TTTCT-TTCTTTTCTGTTTCT
1 TTTCTCTTC-TTTCTGTTTCT
2270985 TT
1 TT
2270987 GCTGCGTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 3 0.15
20 17 0.85
ACGTcount: A:0.00, C:0.21, G:0.02, T:0.76
Consensus pattern (20 bp):
TTTCTCTTCTTTCTGTTTCT
Found at i:2271067 original size:19 final size:19
Alignment explanation
Indices: 2271043--2271079 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
2271033 TTTGTTTCTC
2271043 TGTATTTCTCT-TCTCTCTG
1 TGTATTT-TCTGTCTCTCTG
2271062 TGTATTTTCTGTCTCTCT
1 TGTATTTTCTGTCTCTCT
2271080 CTGTTCTCTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.05, C:0.24, G:0.11, T:0.59
Consensus pattern (19 bp):
TGTATTTTCTGTCTCTCTG
Found at i:2271492 original size:3 final size:3
Alignment explanation
Indices: 2271463--2271545 Score: 103
Period size: 3 Copynumber: 27.0 Consensus size: 3
2271453 GGCCTGTTTG
* * *
2271463 TAA TAT TAA TAAA TAA TATA TAT TAA TAA TAA TAA TAA TAA TTA TAA
1 TAA TAA TAA T-AA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
2271510 TAA TAA TAA TTA TAA TAA TAC TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
2271546 AATGAGTAAA
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
3 62 0.91
4 6 0.09
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:2272052 original size:113 final size:113
Alignment explanation
Indices: 2271808--2272410 Score: 1001
Period size: 113 Copynumber: 5.3 Consensus size: 113
2271798 TAAACTTTCT
* *** * *
2271808 CTTCTTCAGATGAATTCTTCTCATTATGAACTCTTTCTGGAAGAGCTAATCCATCAAATGATGAA
1 CTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGCTAATCCATCAAATGATGGA
** * * *
2271873 TTCAAACAAAA-ATTGAACAAGTTCTTCTTATTATGAACTTCTTCTTC
66 TTTGAGCAAAAGATTGAACAAATTCTTCTCATTATGAACTTCTTCTTC
* * * *
2271920 CTTTTTCAGATGAGTTCTTCTTATTATGAACTCTAACTGGAAAAGCTAATCCATCAAGTGATGGA
1 CTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGCTAATCCATCAAATGATGGA
*
2271985 TTTGAGCAAAAGATTGAACAAATTATTCTCATTATGAACTTCTTCTTC
66 TTTGAGCAAAAGATTGAACAAATTCTTCTCATTATGAACTTCTTCTTC
* *
2272033 TTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGCTGATCCATCAAATGATGGA
1 CTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGCTAATCCATCAAATGATGGA
*
2272098 TTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTC
66 TTTGAGCAAAAGATTGAACAAATTCTTCTCATTATGAACTTCTTCTTC
*
2272146 CTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGCTGATCCATCAAATGATGGA
1 CTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGCTAATCCATCAAATGATGGA
*
2272211 TTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTC
66 TTTGAGCAAAAGATTGAACAAATTCTTCTCATTATGAACTTCTTCTTC
*
2272259 CTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGCTAATCCATCAAGTGATGGA
1 CTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGCTAATCCATCAAATGATGGA
2272324 TTTGAGCAAAAGATTGAACAAATTCTTCTCATTATGAACTTCTTCTTC
66 TTTGAGCAAAAGATTGAACAAATTCTTCTCATTATGAACTTCTTCTTC
2272372 CTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTG
1 CTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTG
2272411 ACACTGTTGA
Statistics
Matches: 464, Mismatches: 26, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
112 65 0.14
113 399 0.86
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (113 bp):
CTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGCTAATCCATCAAATGATGGA
TTTGAGCAAAAGATTGAACAAATTCTTCTCATTATGAACTTCTTCTTC
Found at i:2273354 original size:85 final size:85
Alignment explanation
Indices: 2273172--2273466 Score: 549
Period size: 85 Copynumber: 3.5 Consensus size: 85
2273162 CCTACCGAAT
* *
2273172 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA-TGAGCAAATTCATCTTTCC-AATTC
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGGCACATTCATCTTTCCAAATTC
2273235 AATAACTGGTTTTACCAAAC
66 AATAACTGGTTTTACCAAAC
2273255 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGGCACATTCATCTTTCCAAATTC
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGGCACATTCATCTTTCCAAATTC
2273320 AATAACTGGTTTTACCAAAC
66 AATAACTGGTTTTACCAAAC
*
2273340 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGGAACATTCATCTTTCCAAATTC
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGGCACATTCATCTTTCCAAATTC
2273405 AATAACTGGTTTTACCAAAC
66 AATAACTGGTTTTACCAAAC
2273425 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG
2273467 AGTCTTCTTA
Statistics
Matches: 207, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
83 39 0.19
84 17 0.08
85 151 0.73
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.26
Consensus pattern (85 bp):
CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGGCACATTCATCTTTCCAAATTC
AATAACTGGTTTTACCAAAC
Found at i:2274648 original size:4 final size:4
Alignment explanation
Indices: 2274641--2274688 Score: 50
Period size: 4 Copynumber: 12.8 Consensus size: 4
2274631 ACCCTTTTTT
*
2274641 TTTC TTTC TTT- TTTC TTT- TAT- TTTC TTTC TTT- TTTC TTTC TTCTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT-TC
2274686 TTT
1 TTT
2274689 TTTTTCTTCA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
3 10 0.26
4 24 0.63
5 4 0.11
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (4 bp):
TTTC
Found at i:2274653 original size:14 final size:14
Alignment explanation
Indices: 2274652--2274693 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
2274642 TTCTTTCTTT
*
2274652 TTTCTTTTATTTTC
1 TTTCTTTTTTTTTC
2274666 TTTCTTTTTTCTTTC
1 TTTCTTTTTT-TTTC
2274681 TTCTCTTTTTTTT
1 TT-TCTTTTTTTT
2274694 CTTCAAGCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 9 0.36
15 8 0.32
16 8 0.32
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTCTTTTTTTTTC
Found at i:2274654 original size:11 final size:11
Alignment explanation
Indices: 2274634--2274682 Score: 75
Period size: 11 Copynumber: 4.6 Consensus size: 11
2274624 CACCTTGACC
2274634 CTTT-TTTTTT
1 CTTTCTTTTTT
2274644 CTTTCTTTTTT
1 CTTTCTTTTTT
*
2274655 CTTT-TATTTT
1 CTTTCTTTTTT
2274665 CTTTCTTTTTT
1 CTTTCTTTTTT
2274676 CTTTCTT
1 CTTTCTT
2274683 CTCTTTTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
10 13 0.37
11 22 0.63
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (11 bp):
CTTTCTTTTTT
Found at i:2274664 original size:21 final size:21
Alignment explanation
Indices: 2274634--2274679 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
2274624 CACCTTGACC
*
2274634 CTTTTTTTTTCTTTCTTTTTT
1 CTTTTATTTTCTTTCTTTTTT
2274655 CTTTTATTTTCTTTCTTTTTT
1 CTTTTATTTTCTTTCTTTTTT
2274676 CTTT
1 CTTT
2274680 CTTCTCTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (21 bp):
CTTTTATTTTCTTTCTTTTTT
Found at i:2274669 original size:25 final size:25
Alignment explanation
Indices: 2274636--2274696 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 25
2274626 CCTTGACCCT
*
2274636 TTTTTTTTCTTTCTTT-TTTCTTTTA
1 TTTTTTTTCTTT-TTTCTTTCTTCTA
* *
2274661 TTTTCTTTCTTTTTTCTTTCTTCTC
1 TTTTTTTTCTTTTTTCTTTCTTCTA
2274686 TTTTTTTTCTT
1 TTTTTTTTCTT
2274697 CAAGCATAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
24 3 0.10
25 28 0.90
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (25 bp):
TTTTTTTTCTTTTTTCTTTCTTCTA
Found at i:2274695 original size:11 final size:10
Alignment explanation
Indices: 2274634--2274693 Score: 68
Period size: 10 Copynumber: 5.9 Consensus size: 10
2274624 CACCTTGACC
2274634 CTTTTTTTTT
1 CTTTTTTTTT
2274644 CTTTCTTTTTT
1 CTTT-TTTTTT
*
2274655 CTTTTATTTT
1 CTTTTTTTTT
2274665 CTTTCTTTTTT
1 CTTT-TTTTTT
* *
2274676 C-TTTCTTCT
1 CTTTTTTTTT
2274685 CTTTTTTTT
1 CTTTTTTTT
2274694 CTTCAAGCAT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
9 5 0.12
10 20 0.49
11 16 0.39
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.82
Consensus pattern (10 bp):
CTTTTTTTTT
Found at i:2282083 original size:11 final size:11
Alignment explanation
Indices: 2282067--2282093 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
2282057 ATATAAGGAT
2282067 ATTAGTCTTTA
1 ATTAGTCTTTA
2282078 ATTAGTCTTTA
1 ATTAGTCTTTA
2282089 ATTAG
1 ATTAG
2282094 GGAAATATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.07, G:0.11, T:0.52
Consensus pattern (11 bp):
ATTAGTCTTTA
Found at i:2287539 original size:17 final size:17
Alignment explanation
Indices: 2287519--2287552 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
2287509 GGTAAGTTTC
*
2287519 TCTTCTTTTTTTTCTTT
1 TCTTCTTTTGTTTCTTT
2287536 TCTTCTTTTGTTTCTTT
1 TCTTCTTTTGTTTCTTT
2287553 GCTGCGTTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.00, C:0.18, G:0.03, T:0.79
Consensus pattern (17 bp):
TCTTCTTTTGTTTCTTT
Found at i:2287636 original size:19 final size:18
Alignment explanation
Indices: 2287604--2287639 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
2287594 TTTATTTCTC
*
2287604 TGTATTTCTTTCTCTCTG
1 TGTATTTCTGTCTCTCTG
2287622 TGTATTTTCTGTCTCTCT
1 TGTA-TTTCTGTCTCTCT
2287640 CTGTTCTCTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.06, C:0.22, G:0.11, T:0.61
Consensus pattern (18 bp):
TGTATTTCTGTCTCTCTG
Found at i:2288044 original size:3 final size:3
Alignment explanation
Indices: 2288013--2288095 Score: 85
Period size: 3 Copynumber: 27.0 Consensus size: 3
2288003 GGCCTGTTTG
* * * *
2288013 TAA TAT TAA TAAA TTA TATA TAT TAA TAA TAA TAA TAA TAA TTA TAA
1 TAA TAA TAA T-AA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
2288060 TTA TAA TAA TTA TAA TAA TAC TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
2288096 AATGAGTAAA
Statistics
Matches: 64, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
3 58 0.91
4 6 0.09
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (3 bp):
TAA
Found at i:2291662 original size:19 final size:20
Alignment explanation
Indices: 2291638--2291679 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
2291628 TTCTGTTGAT
* *
2291638 TTTATAGTAATTTGGTAA-A
1 TTTATAATAATTTCGTAATA
2291657 TTTATAATAATTTCGTAATA
1 TTTATAATAATTTCGTAATA
2291677 TTT
1 TTT
2291680 TGATAAAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.36, C:0.02, G:0.10, T:0.52
Consensus pattern (20 bp):
TTTATAATAATTTCGTAATA
Found at i:2294546 original size:82 final size:80
Alignment explanation
Indices: 2294409--2294570 Score: 306
Period size: 82 Copynumber: 2.0 Consensus size: 80
2294399 ACAGCTGTCC
2294409 ACAAAATATTGGAATCAGATAGGAACAATTTGTAAATATAAATTGGCATCTTGTCAAACCTCCTA
1 ACAAAATATTGGAATCAGATAGGAACAATTTGTAAATATAAATTGGCATCTTGTCAAACCTCCTA
2294474 CAAGGTTGTAACTATTT
66 CAAGG-TGT-ACTATTT
2294491 ACAAAATATTGGAATCAGATAGGAACAATTTGTAAATATAAATTGGCATCTTGTCAAACCTCCTA
1 ACAAAATATTGGAATCAGATAGGAACAATTTGTAAATATAAATTGGCATCTTGTCAAACCTCCTA
2294556 CAAGGTGTACTATTT
66 CAAGGTGTACTATTT
2294571 TGATGATATC
Statistics
Matches: 80, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
80 7 0.09
81 3 0.04
82 70 0.88
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.31
Consensus pattern (80 bp):
ACAAAATATTGGAATCAGATAGGAACAATTTGTAAATATAAATTGGCATCTTGTCAAACCTCCTA
CAAGGTGTACTATTT
Found at i:2308451 original size:81 final size:81
Alignment explanation
Indices: 2308378--2308947 Score: 915
Period size: 81 Copynumber: 7.0 Consensus size: 81
2308368 CACAACTAAT
** * * * **
2308378 CCATTATTCTTTTACTCAACAATGTTTAACCGTACATCTAACTGACATAATTGACACCTTTCTAT
1 CCATTATTCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGC
2308443 CAATTGCACAGTTAGG
66 CAATTGCACAGTTAGG
* *
2308459 CCATTATTCTTTTACATCAACGGTATTTAACCGTTCATCTAATTGGCAAAATTGACACCTTTCTG
1 CCATTATTCTTTTAC-TCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTG
*
2308524 CCAATTGCACAGTTAGA
65 CCAATTGCACAGTTAGG
*
2308541 CCATTATTCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACATTTCTGC
1 CCATTATTCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGC
*
2308606 CAATTGCATAGTTAGG
66 CAATTGCACAGTTAGG
*
2308622 CCATTATTCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACCCTTCTGC
1 CCATTATTCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGC
* *
2308687 CAATTGCACAATTAGT
66 CAATTGCACAGTTAGG
* *
2308703 CCATTATTCTTTTACTCAACGGTATTTAACTGTTCATCTAACTGGCATAATTGACATCTTTCTGC
1 CCATTATTCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGC
* *
2308768 CAATTGCATAATTAGG
66 CAATTGCACAGTTAGG
* **
2308784 TCATTATTCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACATATTTCTGC
1 CCATTATTCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGC
*
2308849 CAATTGCACAGTTAAG
66 CAATTGCACAGTTAGG
*
2308865 CCATTATTCTTTTACTCAACAGTATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGC
1 CCATTATTCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGC
2308930 CAATTGCACAGTTAGG
66 CAATTGCACAGTTAGG
2308946 CC
1 CC
2308948 TCAAAGACAC
Statistics
Matches: 452, Mismatches: 36, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
81 381 0.84
82 71 0.16
ACGTcount: A:0.28, C:0.23, G:0.12, T:0.37
Consensus pattern (81 bp):
CCATTATTCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGC
CAATTGCACAGTTAGG
Done.