Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008001.1 Hibiscus syriacus cultivar Beakdansim tig00110458_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3902382
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 18
Found at i:949159 original size:128 final size:127
Alignment explanation
Indices: 948932--949272 Score: 601
Period size: 128 Copynumber: 2.7 Consensus size: 127
948922 TAGTTCTCGG
* *
948932 GGGACATAAGTGACATAATAGGCAATGATAACATATTCTCTGACAAAATAATGGAAGGTGCACCC
1 GGGACATGAGTGACATAATAGGCAATGATAACATATTCTCTGACAAAATAATGGAAGGCGCACCC
*
948997 CCGGGAACGCGCCTTCAAGTCCCTTGAGAAATAATAGGTACTGATATGAATAGTGTCCCCGA
66 CCGGGAACGCGCCTTCAAGTCCCATGAGAAATAATAGGTACTGATATGAATAGTGTCCCCGA
*
949059 GGGACATGAGTGACATAATAGGACAATGATAACATATTCTCTGACAAAAAAATGGAAGGCGCACC
1 GGGACATGAGTGACATAATAGG-CAATGATAACATATTCTCTGACAAAATAATGGAAGGCGCACC
949124 CCCGGGAACGCGCCTTCAAGTCCCATGAGAAATAATAGGTACTGATATGAATAGTGTCCCCGA
65 CCCGGGAACGCGCCTTCAAGTCCCATGAGAAATAATAGGTACTGATATGAATAGTGTCCCCGA
* * *
949187 GTGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAGAATAATGGAAGTCGCACC
1 GGGACATGAGTGACATAATA-GGCAATGATAACATATTCTCTGACAAAATAATGGAAGGCGCACC
949252 CCCGGGAACGCGCCTTCAAGT
65 CCCGGGAACGCGCCTTCAAGT
949273 GAATAGTACC
Statistics
Matches: 204, Mismatches: 8, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
127 21 0.10
128 181 0.89
129 2 0.01
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (127 bp):
GGGACATGAGTGACATAATAGGCAATGATAACATATTCTCTGACAAAATAATGGAAGGCGCACCC
CCGGGAACGCGCCTTCAAGTCCCATGAGAAATAATAGGTACTGATATGAATAGTGTCCCCGA
Found at i:949363 original size:8 final size:8
Alignment explanation
Indices: 949350--949389 Score: 55
Period size: 8 Copynumber: 5.1 Consensus size: 8
949340 TCACAAGCTT
949350 TCAAATTC
1 TCAAATTC
949358 TCAAATTC
1 TCAAATTC
* *
949366 CCAAACTC
1 TCAAATTC
949374 T-AAATTC
1 TCAAATTC
949381 TCAAATTC
1 TCAAATTC
949389 T
1 T
949390 TTGAAAATGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 6 0.22
8 21 0.78
ACGTcount: A:0.38, C:0.28, G:0.00, T:0.35
Consensus pattern (8 bp):
TCAAATTC
Found at i:952392 original size:13 final size:13
Alignment explanation
Indices: 952374--952420 Score: 51
Period size: 13 Copynumber: 3.7 Consensus size: 13
952364 AAATATTTTC
952374 AATATATTTATTT
1 AATATATTTATTT
* *
952387 AATATA-ATAATT
1 AATATATTTATTT
*
952399 AATATATTTATTC
1 AATATATTTATTT
*
952412 AATTTATTT
1 AATATATTT
952421 TCATGTTCTG
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
12 10 0.37
13 17 0.63
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (13 bp):
AATATATTTATTT
Found at i:953989 original size:21 final size:21
Alignment explanation
Indices: 953965--954011 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
953955 AATATGTAAA
953965 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTCCAAAT
*
953986 TCGCGTTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTCCAAAT
954007 TCGCA
1 TCGCA
954012 ACGCGAATCT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.21, C:0.26, G:0.17, T:0.36
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCAAAT
Found at i:954017 original size:21 final size:21
Alignment explanation
Indices: 953900--954017 Score: 71
Period size: 20 Copynumber: 5.8 Consensus size: 21
953890 AAATGGCCAA
**
953900 CAAATTCGCAACGCGA-ACTC
1 CAAATTCGCAACGCGATTTTC
* * *
953920 CAATTTCGCAAC-CCAGTTTC
1 CAAATTCGCAACGCGATTTTC
* * * * *
953940 CAATTTCGCAACGTGAATATG
1 CAAATTCGCAACGCGATTTTC
* **
953961 TAAA-TCGCATTGCGATTTTC
1 CAAATTCGCAACGCGATTTTC
***
953981 CAAATTCGCGTTGCGATTTTC
1 CAAATTCGCAACGCGATTTTC
954002 CAAATTCGCAACGCGA
1 CAAATTCGCAACGCGA
954018 ATCTGTAAAT
Statistics
Matches: 73, Mismatches: 22, Indels: 5
0.73 0.22 0.05
Matches are distributed among these distances:
19 2 0.03
20 38 0.52
21 33 0.45
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (21 bp):
CAAATTCGCAACGCGATTTTC
Found at i:954046 original size:40 final size:40
Alignment explanation
Indices: 954002--954113 Score: 147
Period size: 40 Copynumber: 2.8 Consensus size: 40
953992 TGCGATTTTC
* *
954002 CAAATTCGCAACGCGA-ATCTGTAAA-TCGCAACACAAAAGT
1 CAAATTCGCAACGCGATAGC--CAAATTCGCAACACAAAAGT
954042 CAAATTCGCAACGCGATAGCCAAATTCGCAACACAAAAGT
1 CAAATTCGCAACGCGATAGCCAAATTCGCAACACAAAAGT
* * *
954082 CAAATTCGCAACGTGAAAGTCAAATTCGCAAC
1 CAAATTCGCAACGCGATAGCCAAATTCGCAAC
954114 GCGAAAAACA
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.05
40 60 0.92
41 2 0.03
ACGTcount: A:0.42, C:0.26, G:0.15, T:0.17
Consensus pattern (40 bp):
CAAATTCGCAACGCGATAGCCAAATTCGCAACACAAAAGT
Found at i:954114 original size:20 final size:20
Alignment explanation
Indices: 954002--954119 Score: 132
Period size: 20 Copynumber: 5.9 Consensus size: 20
953992 TGCGATTTTC
*
954002 CAAATTCGCAACGCGAATCTGT
1 CAAATTCGCAACGCGAA--AGT
* *
954024 -AAA-TCGCAACACAAAAGT
1 CAAATTCGCAACGCGAAAGT
* *
954042 CAAATTCGCAACGCGATAGC
1 CAAATTCGCAACGCGAAAGT
* *
954062 CAAATTCGCAACACAAAAGT
1 CAAATTCGCAACGCGAAAGT
*
954082 CAAATTCGCAACGTGAAAGT
1 CAAATTCGCAACGCGAAAGT
954102 CAAATTCGCAACGCGAAA
1 CAAATTCGCAACGCGAAA
954120 AACAATATTA
Statistics
Matches: 79, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
18 2 0.03
19 3 0.04
20 71 0.90
21 3 0.04
ACGTcount: A:0.42, C:0.25, G:0.16, T:0.16
Consensus pattern (20 bp):
CAAATTCGCAACGCGAAAGT
Found at i:954257 original size:22 final size:22
Alignment explanation
Indices: 954229--954279 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
954219 CTACGGCGAC
954229 ATCCGTCCCCATCTCCGACGAA
1 ATCCGTCCCCATCTCCGACGAA
* *
954251 ATTCGTCCCCATCTCCGGCGAA
1 ATCCGTCCCCATCTCCGACGAA
954273 ATCCGTC
1 ATCCGTC
954280 TATCTCCATC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.20, C:0.43, G:0.16, T:0.22
Consensus pattern (22 bp):
ATCCGTCCCCATCTCCGACGAA
Found at i:954719 original size:20 final size:20
Alignment explanation
Indices: 954669--954719 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
954659 TCGCAACGTG
*
954669 ATTTTAGTTTCGCGTTGCGA
1 ATTTAAGTTTCGCGTTGCGA
* * *
954689 TTTTCATTTTCGCGTTGCGA
1 ATTTAAGTTTCGCGTTGCGA
954709 ATTTAAGTTTC
1 ATTTAAGTTTC
954720 AGAAACTACT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.16, C:0.16, G:0.20, T:0.49
Consensus pattern (20 bp):
ATTTAAGTTTCGCGTTGCGA
Found at i:955902 original size:65 final size:65
Alignment explanation
Indices: 955767--955941 Score: 255
Period size: 66 Copynumber: 2.6 Consensus size: 65
955757 TAGGGTACAC
955767 TTTTTTGCTTGTTTAATTGAATTT-TACATTGAAAGTTGATTTGTTTAATTGATGAGGAAATAAG
1 TTTTTTGCTTGTTTAATTG-ATTTGT--A---AAAGTTGATTTGTTTAATTGATGAGGAAATAAG
955831 AATTA-
60 AATTAT
* *
955836 TTTTTTGCTTGTTTAATTGATTTGTAAAAGTTGATTTGTTTAATTTGATGTGTAAATAAGAATTA
1 TTTTTTGCTTGTTTAATTGATTTGTAAAAGTTGATTTGTTTAA-TTGATGAGGAAATAAGAATTA
955901 T
65 T
955902 TTTTTTGCTTGTTTAATTGATTTGTAAAAGTTGATTTGTT
1 TTTTTTGCTTGTTTAATTGATTTGTAAAAGTTGATTTGTT
955942 GTTTTAAATT
Statistics
Matches: 101, Mismatches: 2, Indels: 9
0.90 0.02 0.08
Matches are distributed among these distances:
64 17 0.17
65 19 0.19
66 40 0.40
67 1 0.01
68 4 0.04
69 20 0.20
ACGTcount: A:0.28, C:0.02, G:0.17, T:0.53
Consensus pattern (65 bp):
TTTTTTGCTTGTTTAATTGATTTGTAAAAGTTGATTTGTTTAATTGATGAGGAAATAAGAATTAT
Found at i:956128 original size:20 final size:19
Alignment explanation
Indices: 956099--956149 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 19
956089 CGGTTTGCGA
*
956099 TTTCGAGTTGAGAATTTGAC
1 TTTCGCGTTGA-AATTTGAC
956119 TTTCGCGTTGCAAATTTGAC
1 TTTCGCGTTG-AAATTTGAC
*
956139 TTTCGCATTGA
1 TTTCGCGTTGA
956150 TCGCAACATA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 1 0.04
20 26 0.93
21 1 0.04
ACGTcount: A:0.22, C:0.16, G:0.22, T:0.41
Consensus pattern (19 bp):
TTTCGCGTTGAAATTTGAC
Found at i:956457 original size:18 final size:18
Alignment explanation
Indices: 956434--956469 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
956424 AAGCCAGTTG
956434 TGATTGAGATTTTGATTT
1 TGATTGAGATTTTGATTT
*
956452 TGATTGCGATTTTGATTT
1 TGATTGAGATTTTGATTT
956470 CCTTTTGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.19, C:0.03, G:0.22, T:0.56
Consensus pattern (18 bp):
TGATTGAGATTTTGATTT
Found at i:957874 original size:25 final size:25
Alignment explanation
Indices: 957846--957894 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
957836 ATTATTTTCT
* *
957846 AAATAATGTACCCATAACAATGTTC
1 AAATAATATACCCACAACAATGTTC
957871 AAATAATATACCCACAACAATGTT
1 AAATAATATACCCACAACAATGTT
957895 TAATTGATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.47, C:0.20, G:0.06, T:0.27
Consensus pattern (25 bp):
AAATAATATACCCACAACAATGTTC
Found at i:957998 original size:20 final size:20
Alignment explanation
Indices: 957945--957998 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
957935 AAGGTAAACT
*
957945 TTCGCAACGCGAAATTCAAA
1 TTCGCAACGCGAAAATCAAA
* * *
957965 TTTGCAATGTGAAAGAT-AAA
1 TTCGCAACGCGAAA-ATCAAA
957985 TTCGCAACGCGAAA
1 TTCGCAACGCGAAA
957999 TAATCGTTGC
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
20 25 0.96
21 1 0.04
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.22
Consensus pattern (20 bp):
TTCGCAACGCGAAAATCAAA
Found at i:958030 original size:20 final size:20
Alignment explanation
Indices: 958007--958045 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
957997 AATAATCGTT
*
958007 GCGATAGTCAAATTCGCAAA
1 GCGAAAGTCAAATTCGCAAA
958027 GCGAAAGTCAAATTCGCAA
1 GCGAAAGTCAAATTCGCAA
958046 CACGATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.41, C:0.21, G:0.21, T:0.18
Consensus pattern (20 bp):
GCGAAAGTCAAATTCGCAAA
Found at i:958403 original size:18 final size:18
Alignment explanation
Indices: 958380--958415 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
958370 AAGCCGGTTG
* *
958380 TGATTGGGATTTTGATTT
1 TGATTGCGATCTTGATTT
958398 TGATTGCGATCTTGATTT
1 TGATTGCGATCTTGATTT
958416 CCTTTTGCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.06, G:0.25, T:0.53
Consensus pattern (18 bp):
TGATTGCGATCTTGATTT
Found at i:960365 original size:11 final size:11
Alignment explanation
Indices: 960349--960392 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
960339 TTATTCTGAC
960349 ATACTCCAGTT
1 ATACTCCAGTT
960360 ATACTCCAGTT
1 ATACTCCAGTT
* *
960371 ATATTCCAATT
1 ATACTCCAGTT
*
960382 ATACTTCAGTT
1 ATACTCCAGTT
960393 TGCAGAACAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.41
Consensus pattern (11 bp):
ATACTCCAGTT
Found at i:963921 original size:23 final size:23
Alignment explanation
Indices: 963894--963963 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
963884 GATATTTGTG
963894 GGATTAATGTATGTTGTTGTGAT
1 GGATTAATGTATGTTGTTGTGAT
963917 GGATTAATGTA---TGTTGTGAT
1 GGATTAATGTATGTTGTTGTGAT
*
963937 GGATTAATGTATGTTGTTGTGAG
1 GGATTAATGTATGTTGTTGTGAT
963960 GGAT
1 GGAT
963964 ACTAAAACTT
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
20 20 0.47
23 23 0.53
ACGTcount: A:0.23, C:0.00, G:0.33, T:0.44
Consensus pattern (23 bp):
GGATTAATGTATGTTGTTGTGAT
Found at i:963933 original size:20 final size:20
Alignment explanation
Indices: 963894--963953 Score: 93
Period size: 20 Copynumber: 2.9 Consensus size: 20
963884 GATATTTGTG
963894 GGATTAATGTATGTTGTTGTGAT
1 GGATTAATGTA---TGTTGTGAT
963917 GGATTAATGTATGTTGTGAT
1 GGATTAATGTATGTTGTGAT
963937 GGATTAATGTATGTTGT
1 GGATTAATGTATGTTGT
963954 TGTGAGGGAT
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
20 26 0.70
23 11 0.30
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.47
Consensus pattern (20 bp):
GGATTAATGTATGTTGTGAT
Found at i:964029 original size:30 final size:30
Alignment explanation
Indices: 963993--964056 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 30
963983 TGAAACTTTT
963993 CTCTGCCTTTTTAGGACCACAAGCTTTTAA
1 CTCTGCCTTTTTAGGACCACAAGCTTTTAA
**
964023 CTCTGCCTTTTTAGGACGTCAAGCTTTTAA
1 CTCTGCCTTTTTAGGACCACAAGCTTTTAA
964053 CTCT
1 CTCT
964057 ACCTAACTAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.20, C:0.27, G:0.14, T:0.39
Consensus pattern (30 bp):
CTCTGCCTTTTTAGGACCACAAGCTTTTAA
Found at i:967908 original size:45 final size:46
Alignment explanation
Indices: 967822--967909 Score: 144
Period size: 45 Copynumber: 1.9 Consensus size: 46
967812 AAAAAGCCTG
*
967822 AGTGCATCGATGCATGGTCTTGTGCATCGATGCATCAAATGCACTT
1 AGTGCATCGATGCATGGTCATGTGCATCGATGCATCAAATGCACTT
967868 AGTGCATCGATGCATGGT-ATGTGCATCGATGCAT-AGAATGCA
1 AGTGCATCGATGCATGGTCATGTGCATCGATGCATCA-AATGCA
967910 TTCGATGTTC
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
44 1 0.03
45 21 0.52
46 18 0.45
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (46 bp):
AGTGCATCGATGCATGGTCATGTGCATCGATGCATCAAATGCACTT
Found at i:967957 original size:20 final size:20
Alignment explanation
Indices: 967929--967967 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
967919 CAAGAAATTA
967929 ATTGATGCATCGATGCATGG
1 ATTGATGCATCGATGCATGG
* *
967949 ATTGGTGCATCGGTGCATG
1 ATTGATGCATCGATGCATG
967968 CCTTTGAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.15, G:0.33, T:0.31
Consensus pattern (20 bp):
ATTGATGCATCGATGCATGG
Found at i:968607 original size:2 final size:2
Alignment explanation
Indices: 968600--968627 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
968590 AGCAAACCAA
968600 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
968628 TAAGTTCATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:968687 original size:14 final size:15
Alignment explanation
Indices: 968668--968696 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
968658 TCAAGCATCT
968668 AACAATCCA-AAACA
1 AACAATCCAGAAACA
968682 AACAATCCAGAAACA
1 AACAATCCAGAAACA
968697 TCAAAAACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.62, C:0.28, G:0.03, T:0.07
Consensus pattern (15 bp):
AACAATCCAGAAACA
Found at i:970688 original size:24 final size:24
Alignment explanation
Indices: 970619--970699 Score: 98
Period size: 24 Copynumber: 3.5 Consensus size: 24
970609 CATGGCCTTG
*
970619 TGCATCGATGCACATTC-AAGGCA
1 TGCATCGATGCACATTCAAAGGGA
**
970642 TGCATCGATG--CA-TCAAAATGA
1 TGCATCGATGCACATTCAAAGGGA
*
970663 TGAATCGATGCACATTCAAAGGGA
1 TGCATCGATGCACATTCAAAGGGA
970687 TGCATCGATGCAC
1 TGCATCGATGCAC
970700 TGTTATGTGT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
20 2 0.04
21 14 0.30
23 12 0.26
24 19 0.40
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.22
Consensus pattern (24 bp):
TGCATCGATGCACATTCAAAGGGA
Found at i:970714 original size:44 final size:43
Alignment explanation
Indices: 970596--970718 Score: 124
Period size: 44 Copynumber: 2.8 Consensus size: 43
970586 AAAACCCGAC
* * *
970596 GGATGCATCGATGCATGGCCT-TGTGCATCGATGCACATTCAAG
1 GGATGCATCGATGCATCG-ATATGTGAATCGATGCACATTCAAG
* * *
970639 GCATGCATCGATGCATCAAAATGATGAATCGATGCACATTCAAAG
1 GGATGCATCGATGCATCGATATG-TGAATCGATGCACATTC-AAG
* *
970684 GGATGCATCGATGCA-CTGTTATGTGTATCGATGCA
1 GGATGCATCGATGCATC-GATATGTGAATCGATGCA
970719 TGAAGCACAA
Statistics
Matches: 65, Mismatches: 11, Indels: 7
0.78 0.13 0.08
Matches are distributed among these distances:
43 17 0.26
44 28 0.43
45 20 0.31
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (43 bp):
GGATGCATCGATGCATCGATATGTGAATCGATGCACATTCAAG
Found at i:975204 original size:20 final size:20
Alignment explanation
Indices: 975179--975292 Score: 104
Period size: 20 Copynumber: 5.7 Consensus size: 20
975169 AATTGGGAAA
*
975179 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
975199 ATCGCAATGCGATACTTACT
1 ATCGCAACGCGATACTGACT
* * *
975219 ATCGCAATGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
*
975240 ATCGCAACGAGATACTGACT
1 ATCGCAACGCGATACTGACT
* * *
975260 TTCGCAACGCGATTCTAACT
1 ATCGCAACGCGATACTGACT
*
975280 TTCGCAACGCGAT
1 ATCGCAACGCGAT
975293 TTACATAGCG
Statistics
Matches: 80, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
19 2 0.03
20 63 0.79
21 13 0.16
22 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:975223 original size:61 final size:61
Alignment explanation
Indices: 975176--975292 Score: 162
Period size: 61 Copynumber: 1.9 Consensus size: 61
975166 GCGAATTGGG
* * * * *
975176 AAAATCGCAATGCGATACTGACTATCGCAATGCGATACTTACTATCGCAATGCGATAATAC
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTAACTATCGCAACGCGATAATAC
* * *
975237 AAAATCGCAACGAGATACTGACTTTCGCAACGCGATTCTAACTTTCGCAACGCGAT
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTAACTATCGCAACGCGAT
975293 TTACATAGCG
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
61 48 1.00
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (61 bp):
AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTAACTATCGCAACGCGATAATAC
Found at i:975844 original size:19 final size:19
Alignment explanation
Indices: 975806--975872 Score: 80
Period size: 19 Copynumber: 3.5 Consensus size: 19
975796 TTCGAGAATG
*
975806 AAAATCGCAACACGGAAATA
1 AAAATCGCAACGC-GAAATA
**
975826 ACTATCGCAACGCGAAATA
1 AAAATCGCAACGCGAAATA
* *
975845 AAAAACGCAACGCGAAACA
1 AAAATCGCAACGCGAAATA
975864 AAAATCGCA
1 AAAATCGCA
975873 TTGCGATTTT
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
19 29 0.74
20 10 0.26
ACGTcount: A:0.52, C:0.24, G:0.15, T:0.09
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATA
Found at i:975890 original size:19 final size:19
Alignment explanation
Indices: 975868--976052 Score: 156
Period size: 19 Copynumber: 10.1 Consensus size: 19
975858 GAAACAAAAA
*
975868 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
975887 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
975906 TCGCGTTGCGATTTTTATT
1 TCGCGTTGCGATTTTCATT
*
975925 TCGTGGTTGCGATTTTCATT
1 TCG-CGTTGCGATTTTCATT
* *
975945 TCGTGTTGCGATTGTC---
1 TCGCGTTGCGATTTTCATT
* **
975961 T-G-GTCGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
975978 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
975992 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
976011 TCCGCGTTGCGATTCTCATT
1 T-CGCGTTGCGATTTTCATT
*
976031 ATCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
976051 TC
1 TC
976053 AACCAAAAGA
Statistics
Matches: 136, Mismatches: 17, Indels: 26
0.76 0.09 0.15
Matches are distributed among these distances:
14 20 0.15
15 1 0.01
16 3 0.02
17 3 0.02
18 1 0.01
19 59 0.43
20 48 0.35
21 1 0.01
ACGTcount: A:0.12, C:0.21, G:0.22, T:0.45
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:975945 original size:39 final size:38
Alignment explanation
Indices: 975868--976052 Score: 156
Period size: 33 Copynumber: 5.1 Consensus size: 38
975858 GAAACAAAAA
*
975868 TCGCATTGCGATTTTCATTTCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTTCATT
* *
975906 TCGCGTTGCGATTTTTATTTCGTGGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATTTCG-CGTTGCGATTTTCATT
* * * **
975945 TCGTGTTGCGATTGTC---T-G-GTCGCGATAGTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTTCATT
* **
975978 TCGCGTTGCGA--TTC---TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTTCATT
* *
976011 TCCGCGTTGCGATTCTCATTATCTCGTTGCGATTTTCATT
1 T-CGCGTTGCGATTTTCATT-TCGCGTTGCGATTTTCATT
976051 TC
1 TC
976053 AACCAAAAGA
Statistics
Matches: 121, Mismatches: 16, Indels: 19
0.78 0.10 0.12
Matches are distributed among these distances:
31 3 0.02
33 37 0.31
34 10 0.08
35 1 0.01
36 3 0.02
38 20 0.17
39 29 0.24
40 18 0.15
ACGTcount: A:0.12, C:0.21, G:0.22, T:0.45
Consensus pattern (38 bp):
TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTTCATT
Found at i:976029 original size:20 final size:20
Alignment explanation
Indices: 975995--976052 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
975985 GCGATTCTCT
**
975995 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATTCTCATTTCCG
*
976015 CGTTGCGATTCTCATTAT-CT
1 CGTTGCGATTCTCATT-TCCG
*
976035 CGTTGCGATTTTCATTTC
1 CGTTGCGATTCTCATTTC
976053 AACCAAAAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 1 0.03
20 30 0.94
21 1 0.03
ACGTcount: A:0.14, C:0.24, G:0.19, T:0.43
Consensus pattern (20 bp):
CGTTGCGATTCTCATTTCCG
Found at i:978136 original size:21 final size:21
Alignment explanation
Indices: 978112--978178 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
978102 TCATTCCTCG
978112 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
978133 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
978154 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
978175 AGAG
1 AGAG
978179 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:978136 original size:42 final size:42
Alignment explanation
Indices: 978060--978178 Score: 107
Period size: 42 Copynumber: 2.8 Consensus size: 42
978050 GACTCGCCTG
* * * * * * *
978060 TCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCCCCTA
1 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
*
978102 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTG
1 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
* * *
978144 TCA-TCGTTGAAGAGGT-CCCTCCCACCATTCAAGAG
1 TCATTCCTCG-AGA-GTCCCCTCCCACCGTTCAAGAG
978179 CCCGATTCAC
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
41 4 0.06
42 58 0.91
43 2 0.03
ACGTcount: A:0.23, C:0.36, G:0.18, T:0.23
Consensus pattern (42 bp):
TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
Found at i:979550 original size:14 final size:14
Alignment explanation
Indices: 979531--979566 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
979521 ATTGTTTAAT
979531 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
979545 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
979559 TGATTTGT
1 TGATTTGT
979567 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:979767 original size:19 final size:19
Alignment explanation
Indices: 979745--979895 Score: 71
Period size: 19 Copynumber: 8.7 Consensus size: 19
979735 CGAAATTAAA
979745 TTCGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
979764 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
* *
979779 -CCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* * *
979797 TTCGCATTGC-A----AAA
1 TTCGCGTTGCGATTTTCAT
*
979811 TTAGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
979830 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
*
979845 -TCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* ** *
979863 TTCGCATTGCGATAGTAAT
1 TTCGCGTTGCGATTTTCAT
979882 TTCCGCGTTGCGAT
1 TT-CGCGTTGCGAT
979896 AGACATTAAG
Statistics
Matches: 93, Mismatches: 23, Indels: 31
0.63 0.16 0.21
Matches are distributed among these distances:
14 26 0.28
15 1 0.01
16 6 0.06
17 6 0.06
18 1 0.01
19 43 0.46
20 10 0.11
ACGTcount: A:0.16, C:0.23, G:0.20, T:0.42
Consensus pattern (19 bp):
TTCGCGTTGCGATTTTCAT
Found at i:979791 original size:33 final size:32
Alignment explanation
Indices: 979749--979875 Score: 184
Period size: 33 Copynumber: 3.9 Consensus size: 32
979739 ATTAAATTCG
979749 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATT-CCT
* **
979782 CGTTGCGATTTTCATTTCGCATTGCAAAATT-AG
1 CGTTGCGATTTTCATTTCGCATTGC--GATTCCT
979815 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTC-CT
979848 CGTTGCGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
979876 AGTAATTTCC
Statistics
Matches: 84, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
31 3 0.04
33 78 0.93
35 3 0.04
ACGTcount: A:0.16, C:0.23, G:0.19, T:0.43
Consensus pattern (32 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCT
Found at i:979838 original size:66 final size:66
Alignment explanation
Indices: 979742--979872 Score: 244
Period size: 66 Copynumber: 2.0 Consensus size: 66
979732 ACGCGAAATT
*
979742 AAATTCGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
1 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
979807 A
66 A
*
979808 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGC
1 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
979873 GATAGTAATT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.17, C:0.23, G:0.18, T:0.42
Consensus pattern (66 bp):
AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
A
Found at i:982181 original size:12 final size:12
Alignment explanation
Indices: 982164--982188 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
982154 TCTTCGGGGA
982164 CTTTTTCTTCTT
1 CTTTTTCTTCTT
982176 CTTTTTCTTCTT
1 CTTTTTCTTCTT
982188 C
1 C
982189 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:982397 original size:24 final size:24
Alignment explanation
Indices: 982363--982416 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
982353 CTGAAACATC
* *
982363 ATCAAAATCCGTGTATTGACCAAT
1 ATCAAAATCCGGGTATTGACCAAG
*
982387 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGGGTATTGACCAAG
982411 ATCAAA
1 ATCAAA
982417 TTTCGAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (24 bp):
ATCAAAATCCGGGTATTGACCAAG
Found at i:983480 original size:20 final size:20
Alignment explanation
Indices: 983455--983532 Score: 120
Period size: 20 Copynumber: 3.9 Consensus size: 20
983445 ATTCATTTGA
* *
983455 CTATCGCAACGTGAAAATAG
1 CTATCGCAACGCGAAAATGG
*
983475 CTATCGCAACGTGAAAATGG
1 CTATCGCAACGCGAAAATGG
*
983495 CTATCGCAACGCAAAAATGG
1 CTATCGCAACGCGAAAATGG
983515 CTATCGCAACGCGAAAAT
1 CTATCGCAACGCGAAAAT
983533 CGCAATGCGA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 54 1.00
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.18
Consensus pattern (20 bp):
CTATCGCAACGCGAAAATGG
Found at i:983536 original size:14 final size:14
Alignment explanation
Indices: 983517--983558 Score: 75
Period size: 14 Copynumber: 3.0 Consensus size: 14
983507 AAAAATGGCT
*
983517 ATCGCAACGCGAAA
1 ATCGCAATGCGAAA
983531 ATCGCAATGCGAAA
1 ATCGCAATGCGAAA
983545 ATCGCAATGCGAAA
1 ATCGCAATGCGAAA
983559 TGAAAATCGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.43, C:0.24, G:0.21, T:0.12
Consensus pattern (14 bp):
ATCGCAATGCGAAA
Found at i:983629 original size:18 final size:18
Alignment explanation
Indices: 983565--983628 Score: 84
Period size: 19 Copynumber: 3.8 Consensus size: 18
983555 GAAATGAAAA
983565 TCGCATTGCGA-TTTC--
1 TCGCATTGCGATTTTCAT
983580 TCG--TTGCGATTTTCAT
1 TCGCATTGCGATTTTCAT
983596 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCA-T
983615 TCGCATTGCGATTT
1 TCGCATTGCGATTT
983629 CTCGTTGCGA
Statistics
Matches: 43, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
13 6 0.14
14 4 0.09
15 3 0.07
16 3 0.07
18 12 0.28
19 15 0.35
ACGTcount: A:0.14, C:0.22, G:0.19, T:0.45
Consensus pattern (18 bp):
TCGCATTGCGATTTTCAT
Found at i:985616 original size:19 final size:19
Alignment explanation
Indices: 985592--985662 Score: 63
Period size: 19 Copynumber: 3.7 Consensus size: 19
985582 GAAACTTAAA
985592 ATCGCAACGCAAAATGACT
1 ATCGCAACGCAAAATGACT
* * *
985611 ATCGCAATGCGGAAATGGCT
1 ATCGCAACGC-AAAATGACT
* * *
985631 ATCGCAATGCGAAATGA-A
1 ATCGCAACGCAAAATGACT
985649 ATCGCAACGACAAA
1 ATCGCAACG-CAAA
985663 TCGCAACGCG
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
18 8 0.19
19 18 0.42
20 17 0.40
ACGTcount: A:0.41, C:0.23, G:0.21, T:0.15
Consensus pattern (19 bp):
ATCGCAACGCAAAATGACT
Found at i:985632 original size:20 final size:19
Alignment explanation
Indices: 985592--985647 Score: 76
Period size: 20 Copynumber: 2.9 Consensus size: 19
985582 GAAACTTAAA
* *
985592 ATCGCAACGCAAAATGACT
1 ATCGCAATGCGAAATGACT
*
985611 ATCGCAATGCGGAAATGGCT
1 ATCGCAATGC-GAAATGACT
985631 ATCGCAATGCGAAATGA
1 ATCGCAATGCGAAATGA
985648 AATCGCAACG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 15 0.47
20 17 0.53
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (19 bp):
ATCGCAATGCGAAATGACT
Found at i:985665 original size:13 final size:13
Alignment explanation
Indices: 985647--985701 Score: 56
Period size: 13 Copynumber: 3.8 Consensus size: 13
985637 ATGCGAAATG
985647 AAATCGCAACGAC
1 AAATCGCAACGAC
*
985660 AAATCGCAACGCGAAATG
1 AAATCGCAA--CG--A-C
985678 AAATCGCAACGAC
1 AAATCGCAACGAC
985691 AAATCGCAACG
1 AAATCGCAACG
985702 CGAAAACAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
13 20 0.57
14 1 0.03
15 2 0.06
16 2 0.06
17 1 0.03
18 9 0.26
ACGTcount: A:0.45, C:0.27, G:0.18, T:0.09
Consensus pattern (13 bp):
AAATCGCAACGAC
Found at i:985666 original size:31 final size:31
Alignment explanation
Indices: 985631--985706 Score: 143
Period size: 31 Copynumber: 2.5 Consensus size: 31
985621 GGAAATGGCT
*
985631 ATCGCAATGCGAAATGAAATCGCAACGACAA
1 ATCGCAACGCGAAATGAAATCGCAACGACAA
985662 ATCGCAACGCGAAATGAAATCGCAACGACAA
1 ATCGCAACGCGAAATGAAATCGCAACGACAA
985693 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
985707 ACAAAACGCA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.45, C:0.25, G:0.20, T:0.11
Consensus pattern (31 bp):
ATCGCAACGCGAAATGAAATCGCAACGACAA
Found at i:985687 original size:18 final size:18
Alignment explanation
Indices: 985590--985688 Score: 73
Period size: 18 Copynumber: 5.6 Consensus size: 18
985580 ACGAAACTTA
*
985590 AAATCGCAACGCAAAATG
1 AAATCGCAACGCGAAATG
* *
985608 ACTATCGCAATGCGGAAATGG
1 A-AATCGCAACGC-GAAAT-G
** *
985629 CTATCGCAATGCGAAATG
1 AAATCGCAACGCGAAATG
*
985647 AAATCGCAA--CG--A-C
1 AAATCGCAACGCGAAATG
985660 AAATCGCAACGCGAAATG
1 AAATCGCAACGCGAAATG
985678 AAATCGCAACG
1 AAATCGCAACG
985689 ACAAATCGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
13 9 0.14
14 1 0.02
15 2 0.03
16 2 0.03
17 1 0.02
18 20 0.31
19 14 0.22
20 15 0.23
21 1 0.02
ACGTcount: A:0.41, C:0.23, G:0.21, T:0.14
Consensus pattern (18 bp):
AAATCGCAACGCGAAATG
Found at i:985694 original size:18 final size:18
Alignment explanation
Indices: 985642--985694 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
985632 TCGCAATGCG
985642 AAATGAAATCGCAACGAC
1 AAATGAAATCGCAACGAC
985660 -----AAATCGCAACG-C
1 AAATGAAATCGCAACGAC
985672 GAAATGAAATCGCAACGAC
1 -AAATGAAATCGCAACGAC
985691 AAAT
1 AAAT
985695 CGCAACGCGA
Statistics
Matches: 28, Mismatches: 0, Indels: 14
0.67 0.00 0.33
Matches are distributed among these distances:
12 1 0.04
13 11 0.39
18 15 0.54
19 1 0.04
ACGTcount: A:0.49, C:0.23, G:0.17, T:0.11
Consensus pattern (18 bp):
AAATGAAATCGCAACGAC
Found at i:985710 original size:18 final size:18
Alignment explanation
Indices: 985658--985716 Score: 56
Period size: 18 Copynumber: 3.6 Consensus size: 18
985648 AATCGCAACG
985658 ACAAATCGCAACGCGAAA
1 ACAAATCGCAACGCGAAA
**
985676 TGAAATCGCAA--CG---
1 ACAAATCGCAACGCGAAA
985689 ACAAATCGCAACGCGAAA
1 ACAAATCGCAACGCGAAA
*
985707 ACAAAACGCA
1 ACAAATCGCA
985717 TTGCGATTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 10
0.67 0.11 0.22
Matches are distributed among these distances:
13 9 0.29
15 2 0.06
16 2 0.06
18 18 0.58
ACGTcount: A:0.49, C:0.27, G:0.17, T:0.07
Consensus pattern (18 bp):
ACAAATCGCAACGCGAAA
Found at i:985764 original size:32 final size:31
Alignment explanation
Indices: 985717--985804 Score: 135
Period size: 30 Copynumber: 2.8 Consensus size: 31
985707 ACAAAACGCA
*
985717 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTT-T-G
985750 TTGCGA-TTTCATTTCGCATTGCGA-TTTTG
1 TTGCGATTTTCATTTCGCATTGCGATTTTTG
985779 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGAT
985805 AGCCATTTCC
Statistics
Matches: 52, Mismatches: 1, Indels: 6
0.88 0.02 0.10
Matches are distributed among these distances:
29 7 0.13
30 19 0.37
31 3 0.06
32 17 0.33
33 6 0.12
ACGTcount: A:0.12, C:0.18, G:0.22, T:0.48
Consensus pattern (31 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTTG
Found at i:985804 original size:19 final size:18
Alignment explanation
Indices: 985713--985776 Score: 73
Period size: 18 Copynumber: 3.7 Consensus size: 18
985703 GAAAACAAAA
985713 CGCATTGCGATTTTCATTT
1 CGCATTGCGA-TTTCATTT
* *
985732 CGCGTTGCGATTT--TGT
1 CGCATTGCGATTTCATTT
985748 CG--TTGCGATTTCATTT
1 CGCATTGCGATTTCATTT
985764 CGCATTGCGATTT
1 CGCATTGCGATTT
985777 TGTTGCGATT
Statistics
Matches: 38, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
14 9 0.24
16 8 0.21
18 12 0.32
19 9 0.24
ACGTcount: A:0.12, C:0.20, G:0.22, T:0.45
Consensus pattern (18 bp):
CGCATTGCGATTTCATTT
Found at i:985823 original size:20 final size:19
Alignment explanation
Indices: 985789--985843 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
985779 TTGCGATTTT
*
985789 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
985808 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
985828 CATTTTCGTGTTGCGA
1 CA-TTTCGCGTTGCGA
985844 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:986363 original size:18 final size:18
Alignment explanation
Indices: 986319--986363 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
986309 GTCGATCAGA
*
986319 TGATGGCTCTGGGTGAGG
1 TGATGGCTCTGGGCGAGG
*
986337 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTGGGCGAGG
*
986355 TTATGGCTC
1 TGATGGCTC
986364 CCGAAGTGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.13, C:0.16, G:0.42, T:0.29
Consensus pattern (18 bp):
TGATGGCTCTGGGCGAGG
Found at i:987979 original size:22 final size:22
Alignment explanation
Indices: 987952--987995 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
987942 GATGGAGATA
987952 GACGGATTT-TGCCGGAGATGGG
1 GACGGATTTCT-CCGGAGATGGG
*
987974 GACGGATTTCTTCGGAGATGGG
1 GACGGATTTCTCCGGAGATGGG
987996 TGAGAGAGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 19 0.95
23 1 0.05
ACGTcount: A:0.18, C:0.14, G:0.43, T:0.25
Consensus pattern (22 bp):
GACGGATTTCTCCGGAGATGGG
Found at i:988209 original size:20 final size:20
Alignment explanation
Indices: 988183--988296 Score: 113
Period size: 20 Copynumber: 5.7 Consensus size: 20
988173 GATTATGTAT
988183 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
* *
988203 AATCGCGTTGCGAAATTCAG
1 TATCGCGTTGCGAAAGTCAG
*
988223 TATCGCGTTGCGAAAGTAAG
1 TATCGCGTTGCGAAAGTCAG
* ** *
988243 TATCTCGTTGCGATTTTGT-AT
1 TATCGCGTTGCGA--AAGTCAG
* *
988264 TATCGCATTGCGATAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
988284 TATCGCATTGCGA
1 TATCGCGTTGCGA
988297 TTTTCCCAAT
Statistics
Matches: 78, Mismatches: 13, Indels: 6
0.80 0.13 0.06
Matches are distributed among these distances:
19 3 0.04
20 61 0.78
21 12 0.15
22 2 0.03
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTCAG
Found at i:988234 original size:40 final size:41
Alignment explanation
Indices: 988183--988296 Score: 131
Period size: 40 Copynumber: 2.8 Consensus size: 41
988173 GATTATGTAT
*
988183 TATCGCGTTGCGAAAGTCAGAATCGCGTTGCGAAATT-CAG
1 TATCGCGTTGCGAAAGTCAGTATCGCGTTGCGAAATTGCAG
* * ** * *
988223 TATCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTTGTAT
1 TATCGCGTTGCGAAAGTCAGTATCGCGTTGCGAAATTGCAG
* * *
988264 TATCGCATTGCGATAGTCAGTATCGCATTGCGA
1 TATCGCGTTGCGAAAGTCAGTATCGCGTTGCGA
988297 TTTTCCCAAT
Statistics
Matches: 61, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
40 32 0.52
41 29 0.48
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (41 bp):
TATCGCGTTGCGAAAGTCAGTATCGCGTTGCGAAATTGCAG
Found at i:988286 original size:41 final size:41
Alignment explanation
Indices: 988163--988300 Score: 161
Period size: 41 Copynumber: 3.4 Consensus size: 41
988153 CGCTTTGAAA
* * *
988163 ATCGCATTGCGATTATGTATTATCGCGTTGCGAAAGTCAGA
1 ATCGCGTTGCGATTTTGTATTATCGCGTTGCGAAAGTCAGT
** * * *
988204 ATCGCGTTGCGAAATT-CAGTATCGCGTTGCGAAAGTAAGT
1 ATCGCGTTGCGATTTTGTATTATCGCGTTGCGAAAGTCAGT
* * *
988244 ATCTCGTTGCGATTTTGTATTATCGCATTGCGATAGTCAGT
1 ATCGCGTTGCGATTTTGTATTATCGCGTTGCGAAAGTCAGT
*
988285 ATCGCATTGCGATTTT
1 ATCGCGTTGCGATTTT
988301 CCCAATTCGC
Statistics
Matches: 78, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
40 33 0.42
41 45 0.58
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (41 bp):
ATCGCGTTGCGATTTTGTATTATCGCGTTGCGAAAGTCAGT
Found at i:988316 original size:41 final size:41
Alignment explanation
Indices: 988183--988359 Score: 121
Period size: 41 Copynumber: 4.3 Consensus size: 41
988173 GATTATGTAT
* * * * *
988183 TATCGCGTTGCGAAAGTCAGAATCGCGTTGCGAAATT-CAG
1 TATCGCGTTGCGATAGTCAGTATCGCATTGCGAATTTCCAA
* * * * * ** *
988223 TATCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTTGTAT
1 TATCGCGTTGCGATAGTCAGTATCGCATTGCGAATTTCCAA
* *
988264 TATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAA
1 TATCGCGTTGCGATAGTCAGTATCGCATTGCGAATTT-CCAA
* *
988306 T-TCGCGTTGCGAT--TTACTTATTCGCATTGCGAATTTCCCAA
1 TATCGCGTTGCGATAGTCA-GTA-TCGCATTGCGAATTT-CCAA
*
988347 T-TCACGTTGCGAT
1 TATCGCGTTGCGAT
988360 TTACTTATTC
Statistics
Matches: 113, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.02
40 34 0.30
41 75 0.66
42 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.34
Consensus pattern (41 bp):
TATCGCGTTGCGATAGTCAGTATCGCATTGCGAATTTCCAA
Found at i:988330 original size:20 final size:20
Alignment explanation
Indices: 988286--988378 Score: 87
Period size: 20 Copynumber: 4.5 Consensus size: 20
988276 ATAGTCAGTA
* **
988286 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACTTAT
*
988307 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
* **
988327 TCGCATTGCGAATTTCCCAAT
1 TCGCATTGCG-ATTTACTTAT
* *
988348 TCACGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
988368 TCGCATTGCGA
1 TCGCATTGCGA
988379 ATTGGGAAAA
Statistics
Matches: 56, Mismatches: 15, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
20 31 0.55
21 25 0.45
ACGTcount: A:0.19, C:0.25, G:0.17, T:0.39
Consensus pattern (20 bp):
TCGCATTGCGATTTACTTAT
Found at i:988360 original size:41 final size:41
Alignment explanation
Indices: 988286--988381 Score: 174
Period size: 41 Copynumber: 2.3 Consensus size: 41
988276 ATAGTCAGTA
* *
988286 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGAATTTCCCAATTCACGTTGCGATTTACTTAT
988327 TCGCATTGCGAATTTCCCAATTCACGTTGCGATTTACTTAT
1 TCGCATTGCGAATTTCCCAATTCACGTTGCGATTTACTTAT
988368 TCGCATTGCGAATT
1 TCGCATTGCGAATT
988382 GGGAAAATCG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.40
Consensus pattern (41 bp):
TCGCATTGCGAATTTCCCAATTCACGTTGCGATTTACTTAT
Found at i:990341 original size:20 final size:20
Alignment explanation
Indices: 990313--990351 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
990303 CAAGAAATAA
990313 ATTGATGCATCGATGCATGG
1 ATTGATGCATCGATGCATGG
* *
990333 ATTGGTGCATCGGTGCATG
1 ATTGATGCATCGATGCATG
990352 CCTTTGAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.15, G:0.33, T:0.31
Consensus pattern (20 bp):
ATTGATGCATCGATGCATGG
Found at i:992501 original size:13 final size:13
Alignment explanation
Indices: 992483--992511 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
992473 CACCCTTTAA
992483 CAAGATACTATAT
1 CAAGATACTATAT
992496 CAAGATACTATAT
1 CAAGATACTATAT
992509 CAA
1 CAA
992512 TTTATAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.48, C:0.17, G:0.07, T:0.28
Consensus pattern (13 bp):
CAAGATACTATAT
Found at i:995634 original size:24 final size:24
Alignment explanation
Indices: 995593--995638 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
995583 ATTAAATACT
*
995593 TTTAAGTATTTTTCATTTTTTATA
1 TTTAAGTATTTTTAATTTTTTATA
995617 TTTAA-TATTTTATAATTTTTTA
1 TTTAAGTATTTT-TAATTTTTTA
995639 AAATTCTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (24 bp):
TTTAAGTATTTTTAATTTTTTATA
Found at i:997079 original size:30 final size:30
Alignment explanation
Indices: 997040--997236 Score: 376
Period size: 30 Copynumber: 6.6 Consensus size: 30
997030 CTCCGTCTTT
*
997040 TTAGCACCACAAGCTTTTAACTCTGCCTTC
1 TTAGGACCACAAGCTTTTAACTCTGCCTTC
997070 TTAGGACCACAAGCTTTTAACTCTGCCTTC
1 TTAGGACCACAAGCTTTTAACTCTGCCTTC
997100 TTAGGACCACAAGCTTTTAACTCTGCCTTC
1 TTAGGACCACAAGCTTTTAACTCTGCCTTC
*
997130 TTAGAACCACAAGCTTTTAACTCTGCCTTC
1 TTAGGACCACAAGCTTTTAACTCTGCCTTC
997160 TTAGGACCACAAGCTTTTAACTCTGCCTTC
1 TTAGGACCACAAGCTTTTAACTCTGCCTTC
997190 TTAGGACCACAAGCTTTTAACTCTGCCTTC
1 TTAGGACCACAAGCTTTTAACTCTGCCTTC
997220 TTAGGACCACAAGCTTT
1 TTAGGACCACAAGCTTT
997237 ACGGTGGTTT
Statistics
Matches: 164, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 164 1.00
ACGTcount: A:0.24, C:0.30, G:0.13, T:0.33
Consensus pattern (30 bp):
TTAGGACCACAAGCTTTTAACTCTGCCTTC
Found at i:1002254 original size:17 final size:17
Alignment explanation
Indices: 1002232--1002280 Score: 66
Period size: 17 Copynumber: 3.0 Consensus size: 17
1002222 TTAATATTTT
1002232 GTATTTAATTTATTTAA
1 GTATTTAATTTATTTAA
1002249 GTATTTAATTT-TTTAA
1 GTATTTAATTTATTTAA
* *
1002265 -TATTTTATTTAATTAA
1 GTATTTAATTTATTTAA
1002281 TTTTTTGCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 9 0.31
16 9 0.31
17 11 0.38
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (17 bp):
GTATTTAATTTATTTAA
Found at i:1002271 original size:24 final size:25
Alignment explanation
Indices: 1002235--1002286 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 25
1002225 ATATTTTGTA
* *
1002235 TTTAATTTATTTAAGTATTTAATTT
1 TTTAATATATTTAAGTAATTAATTT
**
1002260 TTTAATAT-TTTATTTAATTAATTT
1 TTTAATATATTTAAGTAATTAATTT
1002284 TTT
1 TTT
1002287 GCAGAAATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (25 bp):
TTTAATATATTTAAGTAATTAATTT
Found at i:1002280 original size:16 final size:16
Alignment explanation
Indices: 1002233--1002281 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
1002223 TAATATTTTG
1002233 TATTTAATTTATTTAA
1 TATTTAATTTATTTAA
1002249 GTATTTAATTT-TTTAA
1 -TATTTAATTTATTTAA
* *
1002265 TATTTTATTTAATTAA
1 TATTTAATTTATTTAA
1002281 T
1 T
1002282 TTTTTGCAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 9 0.31
16 10 0.34
17 10 0.34
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (16 bp):
TATTTAATTTATTTAA
Found at i:1004548 original size:13 final size:13
Alignment explanation
Indices: 1004507--1004550 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
1004497 TATTTAGTAC
*
1004507 TTTTTATTGTAGT
1 TTTTTATTGTAAT
* * *
1004520 TGTTTATTGGACT
1 TTTTTATTGTAAT
1004533 TTTTTATTGTAAT
1 TTTTTATTGTAAT
1004546 TTTTT
1 TTTTT
1004551 TATTATTTAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.16, C:0.02, G:0.14, T:0.68
Consensus pattern (13 bp):
TTTTTATTGTAAT
Found at i:1017096 original size:31 final size:31
Alignment explanation
Indices: 1017058--1017121 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
1017048 TCAAGAAAAA
*
1017058 GTCAGTACTTCACATCAAGCTTGCTGTCCAT
1 GTCAGTACTTCACATCAACCTTGCTGTCCAT
1017089 GTCAGTACTTCACATCAACCTTGCTGTCCAT
1 GTCAGTACTTCACATCAACCTTGCTGTCCAT
1017120 GT
1 GT
1017122 GGGCAACATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.22, C:0.30, G:0.16, T:0.33
Consensus pattern (31 bp):
GTCAGTACTTCACATCAACCTTGCTGTCCAT
Found at i:1019870 original size:18 final size:19
Alignment explanation
Indices: 1019833--1019870 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
1019823 TAAGACCAAT
1019833 CATTTCTACAAACCAATCAA
1 CATTTCTACAAA-CAATCAA
*
1019853 CATTTCTACTAA-AATCAA
1 CATTTCTACAAACAATCAA
1019871 AGCGACGTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
20 11 0.65
ACGTcount: A:0.45, C:0.26, G:0.00, T:0.29
Consensus pattern (19 bp):
CATTTCTACAAACAATCAA
Found at i:1021145 original size:23 final size:23
Alignment explanation
Indices: 1021115--1021191 Score: 145
Period size: 23 Copynumber: 3.3 Consensus size: 23
1021105 ACTAGATATT
1021115 TGATGGATTAATGTATGTTGTTG
1 TGATGGATTAATGTATGTTGTTG
1021138 TGATGGATTAATGTATGTTGTTG
1 TGATGGATTAATGTATGTTGTTG
1021161 TGATGGATTAATGTATGTTGTTG
1 TGATGGATTAATGTATGTTGTTG
*
1021184 TGAGGGAT
1 TGATGGAT
1021192 ACTAAAACTT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 53 1.00
ACGTcount: A:0.22, C:0.00, G:0.32, T:0.45
Consensus pattern (23 bp):
TGATGGATTAATGTATGTTGTTG
Found at i:1021257 original size:30 final size:30
Alignment explanation
Indices: 1021221--1021288 Score: 118
Period size: 30 Copynumber: 2.3 Consensus size: 30
1021211 TGAAACTTTT
1021221 CTCTGCCTTTTTAGGACCACAAGCTTTTAA
1 CTCTGCCTTTTTAGGACCACAAGCTTTTAA
**
1021251 CTCTGCCTTTTTAGGACGTCAAGCTTTTAA
1 CTCTGCCTTTTTAGGACCACAAGCTTTTAA
1021281 CTCTGCCT
1 CTCTGCCT
1021289 AACTACCACC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.19, C:0.28, G:0.15, T:0.38
Consensus pattern (30 bp):
CTCTGCCTTTTTAGGACCACAAGCTTTTAA
Found at i:1025004 original size:29 final size:29
Alignment explanation
Indices: 1024969--1025025 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
1024959 TTATTTTATT
* *
1024969 AAATATTATATAATAAAAATGTTATGTTC
1 AAATATTATATAACAAAAAGGTTATGTTC
*
1024998 AAATATTATATAACATAAAGGTTATGTT
1 AAATATTATATAACAAAAAGGTTATGTT
1025026 ATTTTATTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.47, C:0.04, G:0.09, T:0.40
Consensus pattern (29 bp):
AAATATTATATAACAAAAAGGTTATGTTC
Found at i:1026044 original size:19 final size:19
Alignment explanation
Indices: 1026008--1026044 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
1025998 TTTTTAATAA
*
1026008 TAAAATAAAGGTTTAATTG
1 TAAAATAAAGGTTAAATTG
*
1026027 TAAAATAAATGTTAAATT
1 TAAAATAAAGGTTAAATT
1026045 ATATATTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.00, G:0.11, T:0.38
Consensus pattern (19 bp):
TAAAATAAAGGTTAAATTG
Found at i:1026123 original size:2 final size:2
Alignment explanation
Indices: 1026116--1026145 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
1026106 TTACACTCTT
1026116 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1026146 ACATGTCATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1027585 original size:95 final size:93
Alignment explanation
Indices: 1027384--1027594 Score: 255
Period size: 95 Copynumber: 2.2 Consensus size: 93
1027374 TCACTAAAAA
* * * * * * *
1027384 GTCATTTTAAATTATTATGATAGAGTTTCATTAATTATTAAATATGATTAACAAGTTCAAAAGTA
1 GTCATTTTGAATTATTATGATAGAGTCTAATTAATTATAAAATATGACTAAAAAGTTCAAAAATA
* * * *
1027449 AGGTGATATATACTTGAAACGATTTTGT
66 AGGTGATATATACTTAAAAAGATTCTCT
*
1027477 GTCATTTTGAATTATTATGATAGCGTCTAATTAATTATAAAATATAGTACTAAAAAGTTCAAAAA
1 GTCATTTTGAATTATTATGATAGAGTCTAATTAATTATAAAATAT-G-ACTAAAAAGTTCAAAAA
*
1027542 TGAA-GTGATATATTGC-TAAAAAGATTCTCT
64 T-AAGGTGATATA-TACTTAAAAAGATTCTCT
1027572 GTCATTTTGAATTATTATGATAG
1 GTCATTTTGAATTATTATGATAG
1027595 GGTATGTTAA
Statistics
Matches: 101, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
93 40 0.40
94 1 0.01
95 56 0.55
96 4 0.04
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.40
Consensus pattern (93 bp):
GTCATTTTGAATTATTATGATAGAGTCTAATTAATTATAAAATATGACTAAAAAGTTCAAAAATA
AGGTGATATATACTTAAAAAGATTCTCT
Found at i:1028045 original size:60 final size:58
Alignment explanation
Indices: 1027950--1028064 Score: 160
Period size: 60 Copynumber: 1.9 Consensus size: 58
1027940 TGATGCTTTT
* *
1027950 CATTAAAATGGTCAAAAACATCAAATATGAGTTGATATATCACTAAAAAGAAGAAATGA
1 CATTAAAATGATCAAAAACATCAAATATGAATTGATATATCACTAAAAA-AAGAAATGA
* *
1028009 CATTAAATATGATCAAAAGA-ATCATATATGAATTGATATATCACTGAAAAAAGAAA
1 CATTAAA-ATGATCAAAA-ACATCAAATATGAATTGATATATCACTAAAAAAAGAAA
1028065 GAAAGGACGT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
59 13 0.26
60 36 0.72
61 1 0.02
ACGTcount: A:0.53, C:0.10, G:0.12, T:0.25
Consensus pattern (58 bp):
CATTAAAATGATCAAAAACATCAAATATGAATTGATATATCACTAAAAAAAGAAATGA
Found at i:1030251 original size:16 final size:16
Alignment explanation
Indices: 1030232--1030263 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
1030222 AAAATAATAT
1030232 TATTAAAATATAGTAA
1 TATTAAAATATAGTAA
*
1030248 TATTAAAATATTGTAA
1 TATTAAAATATAGTAA
1030264 GTAGTATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (16 bp):
TATTAAAATATAGTAA
Found at i:1030794 original size:2 final size:2
Alignment explanation
Indices: 1030787--1030821 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
1030777 TAGTAATTAA
1030787 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1030822 ATAGTAGAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1031035 original size:15 final size:17
Alignment explanation
Indices: 1030999--1031040 Score: 61
Period size: 16 Copynumber: 2.6 Consensus size: 17
1030989 ACAAATCACC
1030999 ATTTTTGG-TATCCGAA
1 ATTTTTGGATATCCGAA
1031015 ATTTTTGGATATCCG-A
1 ATTTTTGGATATCCGAA
*
1031031 ATTTTCGGAT
1 ATTTTTGGAT
1031041 CGGATCCGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 18 0.75
17 6 0.25
ACGTcount: A:0.24, C:0.12, G:0.19, T:0.45
Consensus pattern (17 bp):
ATTTTTGGATATCCGAA
Found at i:1033437 original size:31 final size:31
Alignment explanation
Indices: 1033401--1033459 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
1033391 AACTTTAAAG
*
1033401 AGTTTTGCAATACTGAAATTTAAATAATTTT
1 AGTTTTACAATACTGAAATTTAAATAATTTT
*
1033432 AGTTTTACAATGCTGAAATTTAAATAAT
1 AGTTTTACAATACTGAAATTTAAATAAT
1033460 CCATACAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (31 bp):
AGTTTTACAATACTGAAATTTAAATAATTTT
Found at i:1035445 original size:2 final size:2
Alignment explanation
Indices: 1035438--1035479 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
1035428 GAATTTGTTA
1035438 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1035480 GTTTATAAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1039900 original size:65 final size:67
Alignment explanation
Indices: 1039814--1039937 Score: 155
Period size: 67 Copynumber: 1.9 Consensus size: 67
1039804 TTACACTCCT
* * * *
1039814 CTCCTTCTTCACTATTCATTTTT-T-TATTTTAAATTCTA-ATCTACAGTGAAGACGGTAAAATT
1 CTCCATCTTCACTATTCATTTTTCTAAATTTTAAACT-TACATCTACAGTGAAAACGGTAAAATT
1039876 AAA
65 AAA
* * *
1039879 CTCCATCTTCATTATTTATTTTTCTAAATTTTAAACTTACATTTACAGTGAAAACGGTA
1 CTCCATCTTCACTATTCATTTTTCTAAATTTTAAACTTACATCTACAGTGAAAACGGTA
1039938 TGCCCAACTT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
65 20 0.41
66 3 0.06
67 26 0.53
ACGTcount: A:0.32, C:0.17, G:0.07, T:0.44
Consensus pattern (67 bp):
CTCCATCTTCACTATTCATTTTTCTAAATTTTAAACTTACATCTACAGTGAAAACGGTAAAATTA
AA
Found at i:1040181 original size:21 final size:21
Alignment explanation
Indices: 1040151--1040396 Score: 106
Period size: 21 Copynumber: 11.8 Consensus size: 21
1040141 GATTTACATA
* *
1040151 TTCGCATTGCGATAGTCCAAC
1 TTCGCGTTGCGATAGTCCAAG
*
1040172 TTCGCGTTGCGATAGTCGAAG
1 TTCGCGTTGCGATAGTCCAAG
** * *
1040193 TTCGCGTTGCGATTTTTCAAA
1 TTCGCGTTGCGATAGTCCAAG
1040214 TT--CGTTGCGATAGTCCAAG
1 TTCGCGTTGCGATAGTCCAAG
* * * *
1040233 TTTGCGTTGCGATTTATTCTAAA
1 TTCGCGTTGCGA--TAGTCCAAG
*
1040256 TT--CGTTGTGATAGTCCAAG
1 TTCGCGTTGCGATAGTCCAAG
* * * * *
1040275 TTCGTGTTACGATTTATTACAAA
1 TTCGCGTTGCGA--TAGTCCAAG
*
1040298 TT--CGTTACGATAGTCTCCAAG
1 TTCGCGTTGCGATAG--TCCAAG
1040319 TT--CGTTGCGATAGTCTCCAAG
1 TTCGCGTTGCGATAG--TCCAAG
*
1040340 TT--CGTTGCGATAGTCTCCAAA
1 TTCGCGTTGCGATAG--TCCAAG
*
1040361 TT--CGTTGCGATAGTCTCCAAA
1 TTCGCGTTGCGATAG--TCCAAG
1040382 TT--CGTTGCGATAGTC
1 TTCGCGTTGCGATAGTC
1040397 TCCAAATTCG
Statistics
Matches: 184, Mismatches: 31, Indels: 22
0.78 0.13 0.09
Matches are distributed among these distances:
19 27 0.15
21 141 0.77
23 16 0.09
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.36
Consensus pattern (21 bp):
TTCGCGTTGCGATAGTCCAAG
Found at i:1040270 original size:42 final size:41
Alignment explanation
Indices: 1040176--1040396 Score: 209
Period size: 42 Copynumber: 5.3 Consensus size: 41
1040166 TCCAACTTCG
*
1040176 CGTTGCGATAGTCGAAGTTCGCGTTGCGATTT-TTCAAATT
1 CGTTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCAAATT
*
1040216 CGTTGCGATAGTCCAAGTTTGCGTTGCGATTTATTCTAAATT
1 CGTTGCGATAGTCCAAGTTCGCGTTGCGATTTATTC-AAATT
* * *
1040258 CGTTGTGATAGTCCAAGTTCGTGTTACGATTTATTACAAATT
1 CGTTGCGATAGTCCAAGTTCGCGTTGCGATTTATT-CAAATT
* * * * *
1040300 CGTTACGATAGTCTCCAAGTT--CGTTGCGATAGTCTCCAAGTT
1 CGTTGCGATAG--TCCAAGTTCGCGTTGCGAT-TTATTCAAATT
* * * *
1040342 CGTTGCGATAGTCTCCAAATT--CGTTGCGATAGTCTCCAAATT
1 CGTTGCGATAG--TCCAAGTTCGCGTTGCGAT-TTATTCAAATT
1040384 CGTTGCGATAGTC
1 CGTTGCGATAGTC
1040397 TCCAAATTCG
Statistics
Matches: 158, Mismatches: 17, Indels: 12
0.84 0.09 0.06
Matches are distributed among these distances:
40 32 0.20
41 3 0.02
42 112 0.71
43 3 0.02
44 8 0.05
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (41 bp):
CGTTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCAAATT
Found at i:1040397 original size:21 final size:21
Alignment explanation
Indices: 1040294--1040406 Score: 199
Period size: 21 Copynumber: 5.4 Consensus size: 21
1040284 CGATTTATTA
*
1040294 CAAATTCGTTACGATAGTCTC
1 CAAATTCGTTGCGATAGTCTC
*
1040315 CAAGTTCGTTGCGATAGTCTC
1 CAAATTCGTTGCGATAGTCTC
*
1040336 CAAGTTCGTTGCGATAGTCTC
1 CAAATTCGTTGCGATAGTCTC
1040357 CAAATTCGTTGCGATAGTCTC
1 CAAATTCGTTGCGATAGTCTC
1040378 CAAATTCGTTGCGATAGTCTC
1 CAAATTCGTTGCGATAGTCTC
1040399 CAAATTCG
1 CAAATTCG
1040407 CAACGACTGG
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 89 1.00
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (21 bp):
CAAATTCGTTGCGATAGTCTC
Found at i:1041527 original size:21 final size:21
Alignment explanation
Indices: 1041502--1041585 Score: 141
Period size: 21 Copynumber: 4.0 Consensus size: 21
1041492 TGCGATTTTG
*
1041502 GACTATCGCAACGAACTTGGA
1 GACTATCGCAACGAATTTGGA
*
1041523 GACTATCACAACGAATTTGGA
1 GACTATCGCAACGAATTTGGA
*
1041544 GACTACCGCAACGAATTTGGA
1 GACTATCGCAACGAATTTGGA
1041565 GACTATCGCAACGAATTTGGA
1 GACTATCGCAACGAATTTGGA
1041586 ATAAATCGCA
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 58 1.00
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (21 bp):
GACTATCGCAACGAATTTGGA
Found at i:1041596 original size:42 final size:42
Alignment explanation
Indices: 1041506--1041659 Score: 153
Period size: 42 Copynumber: 3.7 Consensus size: 42
1041496 ATTTTGGACT
*
1041506 ATCGCAACGAACTTGGAGACTATCACAACGAATTTGGAGACT--
1 ATCGCAACGAACTTGGAGACTATCGCAACGAATTTGGA-A-TAA
* *
1041548 ACCGCAACGAATTTGGAGACTATCGCAACGAATTTGGAATAA
1 ATCGCAACGAACTTGGAGACTATCGCAACGAATTTGGAATAA
*
1041590 ATCGCAACGCGAACTT-G-GACTATCGTAACGAATTT-GAA-AA
1 ATCGCAA--CGAACTTGGAGACTATCGCAACGAATTTGGAATAA
*
1041630 ATCGCAACGCGAACTT--CGACTATCGCAACG
1 ATCGCAA--CGAACTTGGAGACTATCGCAACG
1041660 CGAACTTGGA
Statistics
Matches: 100, Mismatches: 7, Indels: 12
0.84 0.06 0.10
Matches are distributed among these distances:
40 31 0.31
41 4 0.04
42 58 0.58
43 1 0.01
44 6 0.06
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.21
Consensus pattern (42 bp):
ATCGCAACGAACTTGGAGACTATCGCAACGAATTTGGAATAA
Found at i:1041643 original size:40 final size:42
Alignment explanation
Indices: 1041565--1041659 Score: 158
Period size: 40 Copynumber: 2.3 Consensus size: 42
1041555 CGAATTTGGA
*
1041565 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTG
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
*
1041607 GACTATCGTAACGAATTT-GAA-AAATCGCAACGCGAACTTC
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
1041647 GACTATCGCAACG
1 GACTATCGCAACG
1041660 CGAACTTGGA
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
40 30 0.60
41 3 0.06
42 17 0.34
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.21
Consensus pattern (42 bp):
GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
Found at i:1041654 original size:21 final size:21
Alignment explanation
Indices: 1041499--1041684 Score: 113
Period size: 21 Copynumber: 9.0 Consensus size: 21
1041489 CGTTGCGATT
1041499 TTGGACTATCGCAA--CGAAC
1 TTGGACTATCGCAACGCGAAC
* *
1041518 TTGGAGACTATCACAA--CGAAT
1 TT-G-GACTATCGCAACGCGAAC
* *
1041539 TTGGAGACTACCGCAA--CGAAT
1 TT-G-GACTATCGCAACGCGAAC
*
1041560 TTGGAGACTATCGCAA--CGAAT
1 TT-G-GACTATCGCAACGCGAAC
*
1041581 TTGGAATAAATCGCAACGCGAAC
1 TTGGACT--ATCGCAACGCGAAC
* *
1041604 TTGGACTATCGTAA--CGAAT
1 TTGGACTATCGCAACGCGAAC
* **
1041623 TTGAAAAATCGCAACGCGAAC
1 TTGGACTATCGCAACGCGAAC
*
1041644 TTCGACTATCGCAACGCGAAC
1 TTGGACTATCGCAACGCGAAC
*
1041665 TTGGACTATCGCAATGCGAA
1 TTGGACTATCGCAACGCGAA
1041685 TATGTAAATC
Statistics
Matches: 138, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
19 19 0.14
20 2 0.01
21 107 0.78
23 10 0.07
ACGTcount: A:0.34, C:0.23, G:0.22, T:0.22
Consensus pattern (21 bp):
TTGGACTATCGCAACGCGAAC
Found at i:1042050 original size:24 final size:24
Alignment explanation
Indices: 1042023--1042069 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
1042013 TTTTTATATA
*
1042023 TAATAATATTATATATTTAATTAT
1 TAATAATATTATATATTAAATTAT
*
1042047 TAATAATTTTATATATTAAATTA
1 TAATAATATTATATATTAAATTA
1042070 AACTAATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (24 bp):
TAATAATATTATATATTAAATTAT
Found at i:1043350 original size:33 final size:32
Alignment explanation
Indices: 1043303--1043368 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 32
1043293 GGTTTGGAGA
*
1043303 TTATGATATAATTTATATGGTTTGAAATGAAAT
1 TTATGATATAATTTATAAGGTTTGAAAT-AAAT
* *
1043336 TTATGATGTGATTTATAAGGTTTGAAATAAAT
1 TTATGATATAATTTATAAGGTTTGAAATAAAT
1043368 T
1 T
1043369 AAAAAAATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 5 0.17
33 25 0.83
ACGTcount: A:0.38, C:0.00, G:0.17, T:0.45
Consensus pattern (32 bp):
TTATGATATAATTTATAAGGTTTGAAATAAAT
Found at i:1058956 original size:19 final size:19
Alignment explanation
Indices: 1058929--1058965 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
1058919 AGTATGTTCA
1058929 GGGGATATCGATTCCCCTG
1 GGGGATATCGATTCCCCTG
*
1058948 GGGGGTATCGATTCCCCT
1 GGGGATATCGATTCCCCT
1058966 AAATAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.14, C:0.27, G:0.32, T:0.27
Consensus pattern (19 bp):
GGGGATATCGATTCCCCTG
Found at i:1067580 original size:93 final size:85
Alignment explanation
Indices: 1067499--1067667 Score: 304
Period size: 84 Copynumber: 2.0 Consensus size: 85
1067489 ATGTCATAAA
1067499 TATCATAAATTTATGACGAACAAATGTGTGTCATCTTAATTTATGA-AGGGGCTTCAATGACGCG
1 TATCATAAATTTATGACGAACAAATGTGTGTCATCTTAATTTATGACAGGGGCTTCAATGACGCG
1067563 CAATGTAAGTCATACATGCG
66 CAATGTAAGTCATACATGCG
* * *
1067583 TGTCATAAATTTATGACGCACAAATGTGTGTCATCTTAATTTATGACGGGGGCTTCAATGACGCG
1 TATCATAAATTTATGACGAACAAATGTGTGTCATCTTAATTTATGACAGGGGCTTCAATGACGCG
1067648 CAATGTAAGTCATACATGCG
66 CAATGTAAGTCATACATGCG
1067668 CGACATAAAT
Statistics
Matches: 81, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
84 44 0.54
85 37 0.46
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (85 bp):
TATCATAAATTTATGACGAACAAATGTGTGTCATCTTAATTTATGACAGGGGCTTCAATGACGCG
CAATGTAAGTCATACATGCG
Found at i:1067676 original size:85 final size:84
Alignment explanation
Indices: 1067502--1067677 Score: 307
Period size: 85 Copynumber: 2.1 Consensus size: 84
1067492 TCATAAATAT
1067502 CATAAATTTATGACGAACAAATGTGTGTCATCTTAATTTATGAAGGGGCTTCAATGACGCGCAAT
1 CATAAATTTATGACGAACAAATGTGTGTCATCTTAATTTATGAAGGGGCTTCAATGACGCGCAAT
* *
1067567 GTAAGTCATACATGCGTGT
66 GTAAGTCATACATGCGCGA
* *
1067586 CATAAATTTATGACGCACAAATGTGTGTCATCTTAATTTATGACGGGGGCTTCAATGACGCGCAA
1 CATAAATTTATGACGAACAAATGTGTGTCATCTTAATTTATGA-AGGGGCTTCAATGACGCGCAA
1067651 TGTAAGTCATACATGCGCGA
65 TGTAAGTCATACATGCGCGA
1067671 CATAAAT
1 CATAAAT
1067678 GCGCGTCATA
Statistics
Matches: 87, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
84 42 0.48
85 45 0.52
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (84 bp):
CATAAATTTATGACGAACAAATGTGTGTCATCTTAATTTATGAAGGGGCTTCAATGACGCGCAAT
GTAAGTCATACATGCGCGA
Found at i:1068347 original size:20 final size:20
Alignment explanation
Indices: 1068315--1068404 Score: 108
Period size: 20 Copynumber: 4.5 Consensus size: 20
1068305 AAACTAGGCA
*
1068315 AAGAGTAATCCATATTTTGGC
1 AAGAGT-ATCCATACTTTGGC
1068336 AAGAGTATCCATACTTTGGC
1 AAGAGTATCCATACTTTGGC
* *
1068356 AAGAGTTTCCATACTTTGGT
1 AAGAGTATCCATACTTTGGC
* * * *
1068376 AAAAGTATTCATATTTTGGA
1 AAGAGTATCCATACTTTGGC
1068396 AAGAGTATC
1 AAGAGTATC
1068405 AAAACTTCTC
Statistics
Matches: 59, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
20 53 0.90
21 6 0.10
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.34
Consensus pattern (20 bp):
AAGAGTATCCATACTTTGGC
Found at i:1084966 original size:27 final size:27
Alignment explanation
Indices: 1084935--1085002 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
1084925 TCTATTTACA
1084935 AAATCATATCTCTATAGGAATGATAAC
1 AAATCATATCTCTATAGGAATGATAAC
*
1084962 AAATCATATCTCTATAGGAATGGTAAC
1 AAATCATATCTCTATAGGAATGATAAC
1084989 AAATC--ATCTCTATA
1 AAATCATATCTCTATA
1085003 ATTCCTACAC
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
25 9 0.22
27 31 0.77
ACGTcount: A:0.43, C:0.16, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATCATATCTCTATAGGAATGATAAC
Found at i:1088732 original size:27 final size:27
Alignment explanation
Indices: 1088696--1088763 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
1088686 TCTATTTACA
1088696 AAATCATATCTCTATAGGAATAATAAC
1 AAATCATATCTCTATAGGAATAATAAC
* **
1088723 AAATTATATCTCTATAGGAATGGTAAC
1 AAATCATATCTCTATAGGAATAATAAC
1088750 AAATC--ATCTCTATA
1 AAATCATATCTCTATA
1088764 ATTCCTACAG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
25 9 0.24
27 28 0.76
ACGTcount: A:0.44, C:0.15, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATCATATCTCTATAGGAATAATAAC
Found at i:1091675 original size:27 final size:27
Alignment explanation
Indices: 1091594--1091681 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
1091584 TGTACCAACT
* *
1091594 TTTAATTTCTTTTACTATAGAATTGAA
1 TTTAATTTATTTAACTATAGAATTGAA
* **
1091621 CTTTAATTTTAATTTTCACTATTTAATTGAA
1 -TTTAA-TTT-A-TTTAACTATAGAATTGAA
1091652 TTTAATTTATTTAACTATAGAATTGAA
1 TTTAATTTATTTAACTATAGAATTGAA
1091679 TTT
1 TTT
1091682 TGATTTTAAT
Statistics
Matches: 50, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
27 18 0.36
28 6 0.12
29 6 0.12
30 5 0.10
31 15 0.30
ACGTcount: A:0.34, C:0.07, G:0.06, T:0.53
Consensus pattern (27 bp):
TTTAATTTATTTAACTATAGAATTGAA
Found at i:1101483 original size:2 final size:2
Alignment explanation
Indices: 1101476--1101503 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1101466 ACTATAACAA
1101476 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1101504 TAAAATAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1102490 original size:24 final size:23
Alignment explanation
Indices: 1102446--1102490 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
1102436 CCCTAATTAA
*
1102446 ATAAATAATATACAAATTAAAAT
1 ATAAATAATATACAAAATAAAAT
1102469 ATAAACTAATACTA-AAAATAAA
1 ATAAA-TAATA-TACAAAATAAA
1102491 TAATTAAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 5 0.26
24 12 0.63
25 2 0.11
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (23 bp):
ATAAATAATATACAAAATAAAAT
Found at i:1102526 original size:17 final size:18
Alignment explanation
Indices: 1102489--1102526 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
1102479 ACTAAAAATA
*
1102489 AATAATTAAAACATTCAC
1 AATAATTAAAACATACAC
*
1102507 AATAATTAAAATA-ACAC
1 AATAATTAAAACATACAC
1102524 AAT
1 AAT
1102527 TTAAAATTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.61, C:0.13, G:0.00, T:0.26
Consensus pattern (18 bp):
AATAATTAAAACATACAC
Found at i:1103558 original size:30 final size:30
Alignment explanation
Indices: 1103495--1103577 Score: 96
Period size: 30 Copynumber: 2.8 Consensus size: 30
1103485 CCCGAAGGAC
* * *
1103495 CTATCTAGAGGTCACAAAG-ACCCCAGTAA
1 CTATCCAGAGGTCACAAAGAACCTCAGCAA
* *
1103524 CTATCCAGAGGTCATAAAGAACCTCGGCAA
1 CTATCCAGAGGTCACAAAGAACCTCAGCAA
* *
1103554 CTATCCATAGGTCCCAAAGAACCT
1 CTATCCAGAGGTCACAAAGAACCT
1103578 AGGTAAACTG
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
29 17 0.38
30 28 0.62
ACGTcount: A:0.36, C:0.29, G:0.17, T:0.18
Consensus pattern (30 bp):
CTATCCAGAGGTCACAAAGAACCTCAGCAA
Found at i:1103606 original size:31 final size:31
Alignment explanation
Indices: 1103552--1103679 Score: 123
Period size: 31 Copynumber: 4.1 Consensus size: 31
1103542 GAACCTCGGC
* * * * *
1103552 AACTATCCATAGGTCCCAAAGAACCTAGGTA
1 AACTGTCCATATGTTCCATAGAACATAGGTA
*
1103583 AACTGTCCATATGTTCCTTAGAACATAGGTA
1 AACTGTCCATATGTTCCATAGAACATAGGTA
* * *
1103614 TACTGTCCATATGTCTCGAAAG-ACATAGGTAA
1 AACTGTCCATATGT-TCCATAGAACATAGGT-A
* * *
1103646 AACTTTTCATATGTTCCGTAGAACATAGGTA
1 AACTGTCCATATGTTCCATAGAACATAGGTA
1103677 AAC
1 AAC
1103680 CCTCGATTCT
Statistics
Matches: 78, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
31 54 0.69
32 24 0.31
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.28
Consensus pattern (31 bp):
AACTGTCCATATGTTCCATAGAACATAGGTA
Found at i:1105580 original size:63 final size:63
Alignment explanation
Indices: 1105510--1105671 Score: 168
Period size: 63 Copynumber: 2.6 Consensus size: 63
1105500 ATCCCTAGAC
* * * * **
1105510 GGGTGCATCGATGCACT-ATCTATGCATCGGTGCATAAATCCCATTCGTTGTTTGTATTTT-AG
1 GGGTGCATCGATGCACTCCT-TATGCATCGATGCACAAATCCCATTCGATGTTTCCATTTTAAG
* * * *
1105572 GGGATGCATCGATGCACTCCTTATGCATCGATGCACCAATCGCATTTGATGTTTCCATTTTAAT
1 GGG-TGCATCGATGCACTCCTTATGCATCGATGCACAAATCCCATTCGATGTTTCCATTTTAAG
* *
1105636 GGGTGCATCGATGCACTTCC-TGTGCATCGATACACA
1 GGGTGCATCGATGCAC-TCCTTATGCATCGATGCACA
1105672 CTGAACAATT
Statistics
Matches: 83, Mismatches: 13, Indels: 7
0.81 0.13 0.07
Matches are distributed among these distances:
62 3 0.04
63 72 0.87
64 8 0.10
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (63 bp):
GGGTGCATCGATGCACTCCTTATGCATCGATGCACAAATCCCATTCGATGTTTCCATTTTAAG
Found at i:1108353 original size:3 final size:3
Alignment explanation
Indices: 1108345--1108615 Score: 449
Period size: 3 Copynumber: 90.7 Consensus size: 3
1108335 TTATTCAATG
1108345 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1108393 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
*
1108441 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G-A GAG GAAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G-AA GAA GAA
* * * *
1108486 GAG GAG GAG GAA GAA GAA GAA G-A GAG GAA GAA GAA GAA GAA G-A GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
*
1108532 GAA GAA GAG GAA GAA GAA GAA GAA GAAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA G-AA GAA GAA GAA GAA GAA GAA
1108578 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1108616 CATGGATTTT
Statistics
Matches: 255, Mismatches: 8, Indels: 10
0.93 0.03 0.04
Matches are distributed among these distances:
2 6 0.02
3 244 0.96
4 5 0.02
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:1113114 original size:15 final size:15
Alignment explanation
Indices: 1113094--1113124 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
1113084 CCCAAGATGT
1113094 AGAACCCTCAGCCGC
1 AGAACCCTCAGCCGC
1113109 AGAACCCTCAGCCGC
1 AGAACCCTCAGCCGC
1113124 A
1 A
1113125 CCATGATGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.29, C:0.45, G:0.19, T:0.06
Consensus pattern (15 bp):
AGAACCCTCAGCCGC
Found at i:1119050 original size:23 final size:22
Alignment explanation
Indices: 1119016--1119058 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
1119006 ATTGTTAGAT
1119016 TAAAAAATATATATATATATAAAA
1 TAAAAAATATAT-TA-ATATAAAA
1119040 TAAAAAA-ATATTAATATAA
1 TAAAAAATATATTAATATAA
1119059 TAAAAAGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.32
22 2 0.11
23 4 0.21
24 7 0.37
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAAAATATATTAATATAAAA
Found at i:1119071 original size:25 final size:25
Alignment explanation
Indices: 1119017--1119063 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
1119007 TTGTTAGATT
1119017 AAAAAATATATATATATATAAAATA
1 AAAAAATATATATATATATAAAATA
1119042 AAAAAATAT-TA-ATATAATAAAA
1 AAAAAATATATATATAT-ATAAAA
1119064 AGATAAAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 4 0.19
24 8 0.38
25 9 0.43
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (25 bp):
AAAAAATATATATATATATAAAATA
Found at i:1119111 original size:13 final size:14
Alignment explanation
Indices: 1119093--1119122 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
1119083 ACGTTAGTAA
1119093 AAAATAAAA-AAAT
1 AAAATAAAATAAAT
1119106 AAAATAAAATAAAT
1 AAAATAAAATAAAT
1119120 AAA
1 AAA
1119123 CCAATCAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (14 bp):
AAAATAAAATAAAT
Found at i:1121060 original size:106 final size:106
Alignment explanation
Indices: 1120529--1122017 Score: 2048
Period size: 105 Copynumber: 14.3 Consensus size: 106
1120519 CATTGTTCCA
* * ** * *
1120529 AGTCCAATATCCTCCG-TCGTGAAGTTGAAATTGGCTCTGGAACCGGGAAATTGGTTGTTGACAA
1 AGTCCAATATCCTTCGCT-GTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
** * * *
1120593 CCAGCCATCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * ** * *
1120635 AGTCCAACATCCTTCGTTGTGAAGTTGAAATTGATTCTG-AA-T--GAA-AT-TTTGTTGACAAG
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
1120694 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * * *
1120735 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGGAGTTG-TTGTTGACAAG
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
1120799 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* **
1120840 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATCGGGAA--AATTTGTTGACAAC
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
* * *
1120903 AAGCGGTCCCTTCGTCGTGAAGTTGAACATACGTTGTCTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * *
1120944 AGTCCAATATCCTTCGATGTGAAGTTGAAATTGGCTATGAAATTGGGAAGTTGTTTATTGACAAC
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
1121009 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
1121050 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAAC
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
* *
1121115 CAGTGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * * * * * *
1121156 AGTCCACTATCATTCGCTGTGAAGTTGAAATTGACT-TTAGAATTGGAAAATTGTTTATTGACAA
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGA-AATTGGGAAGTTGTTTGTTGACAA
1121220 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
1121262 AGTCCAATATCCTTCG-T-T---G-CG-AA---G-T-TGAAATTGGGAAGTTGTTTATTGACAAC
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
*
1121315 CAGCGGTCCCTTCGCCGTGAAGTTGAACTTGCGTTGTCTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
1121356 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTG-TTGTTGACAAG
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
*
1121420 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * *
1121461 AGTCCAATATCCTTCGCTGTGAAGTTTAAATTGGCTCTGAAATTGAGAA-ATGTTTGTTGACAAC
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
1121525 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
** * *
1121566 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGATTTTTTTTATTGACAAC
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
*
1121631 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCAGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
** * * *
1121672 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTTTGAAATT-ATTGTTGACAAG
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
1121736 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* **
1121777 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATAGGGAA--AATTTGTTGACAAC
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
* *
1121840 CAGCGGTCCCTTCGTCGTGAAGTTGAACATACGTTGTCTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
1121881 AGTCCAATATCCTTCGATGTGAAGTTGAAATTGGCTCTGAAATTGGGAAG-TGTTTGTTGACAAT
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
* * * * *
1121945 CAGCCGCCCCTTCGTCATGAAGTTGAGCTTGTGTTGTCTTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC-TGG
* * ** *
1121987 A-TTCAAGATCCTTCATTGAGAAGTTGAAATT
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATT
1122018 TACTCTCGAG
Statistics
Matches: 1240, Mismatches: 115, Indels: 57
0.88 0.08 0.04
Matches are distributed among these distances:
94 79 0.06
95 4 0.00
96 1 0.00
99 3 0.00
100 84 0.07
101 5 0.00
102 4 0.00
104 196 0.16
105 456 0.37
106 407 0.33
107 1 0.00
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (106 bp):
AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
Found at i:1121679 original size:211 final size:209
Alignment explanation
Indices: 1120529--1122017 Score: 2030
Period size: 209 Copynumber: 7.2 Consensus size: 209
1120519 CATTGTTCCA
* * ** *
1120529 AGTCCAATATCCTCCG-TCGTGAAGTTGAAATTGGCTCTGGAACCGGGAAATTGGTTGTTGACAA
1 AGTCCAATATCCTTCGCT-GTGAAGTTGAAATTGGCTCTGAAATTGGG-AATT-TTTGTTGACAA
** * * * * *
1120593 CCAGCCATCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAACATCCTTCGTTGTGAA
63 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAA
** *
1120658 GTTGAAATTGATTCTG-AA-T--GAAAT-TTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTT
128 GTTGAAATTGGCTCTGAAATTGGGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
1120718 GAACTTGCGTTGTCTGG
193 GAACTTGCGTTGTCTGG
* * * * *
1120735 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGGAGTTGTTGTTGACAAGC
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATT-GGGAATTTTTGTTGACAACC
1120800 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGT
65 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGT
* * *
1120865 TGAAATTGGCTCTGAAATCGGGAAA-ATTTGTTGACAACAAGCGGTCCCTTCGTCGTGAAGTTGA
130 TGAAATTGGCTCTGAAATTGGGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGA
* *
1120929 ACATACGTTGTCTGG
195 ACTTGCGTTGTCTGG
* * *
1120944 AGTCCAATATCCTTCGATGTGAAGTTGAAATTGGCTATGAAATTGGGAAGTTGTTTATTGACAAC
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAA-TT-TTTGTTGACAAC
*
1121009 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
64 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAG
* * *
1121074 TTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGTGGTCCCTTCGTCGTGAAGTT
129 TTGAAATTGGCTCTGAAATTGGGAA-ATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
*
1121139 GAACTTGTGTTGTCTGG
193 GAACTTGCGTTGTCTGG
* * * * * *
1121156 AGTCCACTATCATTCGCTGTGAAGTTGAAATTGACT-TTAGAATTGGAAAATTGTTTATTGACAA
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGA-AATTGG-GAATT-TTTGTTGACAA
* *
1121220 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGCGAA
63 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAA
* * *
1121285 GTTGAAATTGG----G-AA----G--TTGTTTATTGACAACCAGCGGTCCCTTCGCCGTGAAGTT
128 GTTGAAATTGGCTCTGAAATTGGGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
1121339 GAACTTGCGTTGTCTGG
193 GAACTTGCGTTGTCTGG
* * *
1121356 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAGC
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAA-TTTTTGTTGACAACC
*
1121421 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTTGAGTCCAATATCCTTCGCTGTGAAGT
65 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGT
* *
1121486 TTAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGA
130 TGAAATTGGCTCTGAAATTGGGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGA
1121551 ACTTGCGTTGTCTGG
195 ACTTGCGTTGTCTGG
* *
1121566 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGATTTTTTTTATTGACAAC
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGA--ATTTTTGTTGACAAC
*
1121631 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCAGGAGTCCAATATCCTTCGCTGTGAAG
64 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAG
** *
1121696 TTGAAATTGGCTCTGAAATTTTGAAAT-TATTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTT
129 TTGAAATTGGCTCTGAAATTGGGAAATGT-TTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
1121760 GAACTTGCGTTGTCTGG
193 GAACTTGCGTTGTCTGG
* **
1121777 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATAGGGAAAATTTGTTGACAACCA
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAATTTTTGTTGACAACCA
* * *
1121842 GCGGTCCCTTCGTCGTGAAGTTGAACATACGTTGTCTGGAGTCCAATATCCTTCGATGTGAAGTT
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTT
* * * * * *
1121907 GAAATTGGCTCTGAAATTGGGAAGTGTTTGTTGACAATCAGCCGCCCCTTCGTCATGAAGTTGAG
131 GAAATTGGCTCTGAAATTGGGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAA
*
1121972 CTTGTGTTGTCTTGG
196 CTTGCGTTGTC-TGG
* * ** *
1121987 A-TTCAAGATCCTTCATTGAGAAGTTGAAATT
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATT
1122018 TACTCTCGAG
Statistics
Matches: 1153, Mismatches: 99, Indels: 59
0.88 0.08 0.05
Matches are distributed among these distances:
199 82 0.07
200 92 0.08
201 2 0.00
203 2 0.00
204 2 0.00
205 82 0.07
206 42 0.04
207 6 0.01
208 6 0.01
209 260 0.23
210 202 0.18
211 198 0.17
212 175 0.15
213 2 0.00
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (209 bp):
AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAATTTTTGTTGACAACCA
GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTT
GAAATTGGCTCTGAAATTGGGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAA
CTTGCGTTGTCTGG
Found at i:1125675 original size:27 final size:27
Alignment explanation
Indices: 1125616--1125675 Score: 65
Period size: 25 Copynumber: 2.3 Consensus size: 27
1125606 AAATATTGTT
*
1125616 AGATTAAAAAATATATATATATAAAAA
1 AGATAAAAAAATATATATATATAAAAA
1125643 AG--AAAAAAATAT-TA-ATATAATAAAA
1 AGATAAAAAAATATATATATAT-A-AAAA
1125668 AGATAAAA
1 AGATAAAA
1125676 CAGATAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
23 4 0.14
24 3 0.11
25 15 0.54
27 6 0.21
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (27 bp):
AGATAAAAAAATATATATATATAAAAA
Found at i:1125685 original size:26 final size:27
Alignment explanation
Indices: 1125621--1125685 Score: 64
Period size: 26 Copynumber: 2.5 Consensus size: 27
1125611 TTGTTAGATT
*
1125621 AAAAA-ATATATATATATAAAAAAGAA
1 AAAAAGATAAATATATATAAAAAAGAA
* *
1125647 AAAAATATTAATATA-AT-AAAAAGATA
1 AAAAAGATAAATATATATAAAAAAGA-A
*
1125673 AAACAGATAAATA
1 AAAAAGATAAATA
1125686 AACGTTAGTA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
25 7 0.22
26 18 0.56
27 7 0.22
ACGTcount: A:0.71, C:0.02, G:0.05, T:0.23
Consensus pattern (27 bp):
AAAAAGATAAATATATATAAAAAAGAA
Found at i:1125715 original size:13 final size:14
Alignment explanation
Indices: 1125697--1125726 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
1125687 ACGTTAGTAA
1125697 AAAATAAAA-AAAT
1 AAAATAAAATAAAT
1125710 AAAATAAAATAAAT
1 AAAATAAAATAAAT
1125724 AAA
1 AAA
1125727 CCAATCAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (14 bp):
AAAATAAAATAAAT
Found at i:1126783 original size:91 final size:91
Alignment explanation
Indices: 1126675--1126859 Score: 343
Period size: 91 Copynumber: 2.0 Consensus size: 91
1126665 AAGTTAGCTT
1126675 CATAATGAAATGAATATTGAGATAATTGTACAAGATGTCTTTAAACTATGACTTCTATTTTAGAT
1 CATAATGAAATGAATATTGAGATAATTGTACAAGATGTCTTTAAACTATGACTTCTATTTTAGAT
*
1126740 TGGTCCCTAAACTTTAAATTGTTCTA
66 TAGTCCCTAAACTTTAAATTGTTCTA
* *
1126766 CATAATGAAATGTATATTGAGATAATTGTACAAGATGTCTTTAAACTATGACTTTTATTTTAGAT
1 CATAATGAAATGAATATTGAGATAATTGTACAAGATGTCTTTAAACTATGACTTCTATTTTAGAT
1126831 TAGTCCCTAAACTTTAAATTGTTCTA
66 TAGTCCCTAAACTTTAAATTGTTCTA
1126857 CAT
1 CAT
1126860 CGATCTTCAA
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
91 91 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (91 bp):
CATAATGAAATGAATATTGAGATAATTGTACAAGATGTCTTTAAACTATGACTTCTATTTTAGAT
TAGTCCCTAAACTTTAAATTGTTCTA
Found at i:1130795 original size:1000 final size:1000
Alignment explanation
Indices: 1128856--1130846 Score: 3982
Period size: 1000 Copynumber: 2.0 Consensus size: 1000
1128846 TACGACGAGC
1128856 CCGGTGATATGACGGTGAACCTACGACGGCCGGAGGTGAAAGTCGGTGAAGGACGGCGTTTAGAT
1 CCGGTGATATGACGGTGAACCTACGACGGCCGGAGGTGAAAGTCGGTGAAGGACGGCGTTTAGAT
1128921 CTGCGCCGAATGGATTATTTTCTCGTAAATCTAATCTCAAAAATGAAATCAGAGTGAGGAAACGA
66 CTGCGCCGAATGGATTATTTTCTCGTAAATCTAATCTCAAAAATGAAATCAGAGTGAGGAAACGA
1128986 TCTTTCTGGGTAAAAATGGCGGCGAACGGATGACGGAATGTGGCGGCGGATGGCGTAAGTCGGAC
131 TCTTTCTGGGTAAAAATGGCGGCGAACGGATGACGGAATGTGGCGGCGGATGGCGTAAGTCGGAC
1129051 TTTAGACGGCAGACGTTGTACAGTAGACGGCGAACGCGATGTATAAAGATGGCGGGCGGTGATGG
196 TTTAGACGGCAGACGTTGTACAGTAGACGGCGAACGCGATGTATAAAGATGGCGGGCGGTGATGG
1129116 TTGAGATGAGATGAAATGATGGATGAAAAAAACAAAAAGCACCTTGAACCAAGAGAGAAGCCCGC
261 TTGAGATGAGATGAAATGATGGATGAAAAAAACAAAAAGCACCTTGAACCAAGAGAGAAGCCCGC
1129181 TTCTCTCACTAGGTTTGAATTTTGAAAAATTGGTGGAATTCCTTGGATGCGCATTAGCAGTGTTA
326 TTCTCTCACTAGGTTTGAATTTTGAAAAATTGGTGGAATTCCTTGGATGCGCATTAGCAGTGTTA
1129246 ACAGGAACCAGAACTTTTGCTCCCGTGCCCTTCGCTTTGGCTGACTTTTTTCGGCTCCTTTTAGT
391 ACAGGAACCAGAACTTTTGCTCCCGTGCCCTTCGCTTTGGCTGACTTTTTTCGGCTCCTTTTAGT
1129311 TTTTTCAGCCTCAATGAAATTGTCATCATCAATAGGTTCAACATTTGTTGTGGTTACATTGGCAT
456 TTTTTCAGCCTCAATGAAATTGTCATCATCAATAGGTTCAACATTTGTTGTGGTTACATTGGCAT
1129376 AAGACGTACAAATAGTGCCAGGAACATCTGCATCTCTTTCCTTGGATTTTGCCAACACTTCTTCT
521 AAGACGTACAAATAGTGCCAGGAACATCTGCATCTCTTTCCTTGGATTTTGCCAACACTTCTTCT
1129441 GCCAGCAGGTCGTGTAATGGGCCCTTTGGGCTCTTTTTACTCGTTGAATTTAAAGAACTTTCAGG
586 GCCAGCAGGTCGTGTAATGGGCCCTTTGGGCTCTTTTTACTCGTTGAATTTAAAGAACTTTCAGG
1129506 TTTCACAACAGCTGACTCATCTAAATCTGCATCTCTTTGATTTTCTCTAGAAATAATGGGTTCAG
651 TTTCACAACAGCTGACTCATCTAAATCTGCATCTCTTTGATTTTCTCTAGAAATAATGGGTTCAG
1129571 AACTAGACACAGCCCCAGCCCACGAAGTTAAAATATTCGAAGAATTCACAGAAGTAACCTCTGAT
716 AACTAGACACAGCCCCAGCCCACGAAGTTAAAATATTCGAAGAATTCACAGAAGTAACCTCTGAT
1129636 ACAGCTATCTCCGTTTGAGCCTTCCTCTGTTCTTCCAATTGGATTTCCAATAATGACTTTGGCTT
781 ACAGCTATCTCCGTTTGAGCCTTCCTCTGTTCTTCCAATTGGATTTCCAATAATGACTTTGGCTT
1129701 GAAGCCAGGAGCAGGTTTCCAAGCACTTTCCGCAGGCCGTGTAGTTGGTTTCTGCACTGGGAAAG
846 GAAGCCAGGAGCAGGTTTCCAAGCACTTTCCGCAGGCCGTGTAGTTGGTTTCTGCACTGGGAAAG
1129766 AACCAGAAAGTTGGGACTCACCCTTTAGCTCTTTGGTTTCATCATCGACCACAGCAATGTTAGCA
911 AACCAGAAAGTTGGGACTCACCCTTTAGCTCTTTGGTTTCATCATCGACCACAGCAATGTTAGCA
1129831 GCTGAAGAGCTTTTAGCAGCTATCT
976 GCTGAAGAGCTTTTAGCAGCTATCT
1129856 CCGGTGATATGACGGTGAACCTACGACGGCCGGAGGTGAAAGTCGGTGAAGGACGGCGTTTAGAT
1 CCGGTGATATGACGGTGAACCTACGACGGCCGGAGGTGAAAGTCGGTGAAGGACGGCGTTTAGAT
1129921 CTGCGCCGAATGGATTATTTTCTCGTAAATCTAATCTCAAAAATGAAATCAGAGTGAGGAAACGA
66 CTGCGCCGAATGGATTATTTTCTCGTAAATCTAATCTCAAAAATGAAATCAGAGTGAGGAAACGA
1129986 TCTTTCTGGGTAAAAATGGCGGCGAACGGATGACGGAATGTGGCGGCGGATGGCGTAAGTCGGAC
131 TCTTTCTGGGTAAAAATGGCGGCGAACGGATGACGGAATGTGGCGGCGGATGGCGTAAGTCGGAC
1130051 TTTAGACGGCAGACGTTGTACAGTAGACGGCGAACGCGATGTATAAAGATGGCGGGCGGTGATGG
196 TTTAGACGGCAGACGTTGTACAGTAGACGGCGAACGCGATGTATAAAGATGGCGGGCGGTGATGG
1130116 TTGAGATGAGATGAAATGATGGATGAAAAAAACAAAAAGCACCTTGAACCAAGAGAGAAGCCCGC
261 TTGAGATGAGATGAAATGATGGATGAAAAAAACAAAAAGCACCTTGAACCAAGAGAGAAGCCCGC
1130181 TTCTCTCACTAGGTTTGAATTTTGAAAAATTGGTGGAATTCCTTGGATGCGCATTAGCAGTGTTA
326 TTCTCTCACTAGGTTTGAATTTTGAAAAATTGGTGGAATTCCTTGGATGCGCATTAGCAGTGTTA
1130246 ACAGGAACCAGAACTTTTGCTCCCGTGCCCTTCGCTTTGGCTGACTTTTTTCGGCTCCTTTTAGT
391 ACAGGAACCAGAACTTTTGCTCCCGTGCCCTTCGCTTTGGCTGACTTTTTTCGGCTCCTTTTAGT
1130311 TTTTTCAGCCTCAATGAAATTGTCATCATCAATAGGTTCAACATTTGTTGTGGTTACATTGGCAT
456 TTTTTCAGCCTCAATGAAATTGTCATCATCAATAGGTTCAACATTTGTTGTGGTTACATTGGCAT
1130376 AAGACGTACAAATAGTGCCAGGAACATCTGCATCTCTTTCCTTGGATTTTGCCAACACTTCTTCT
521 AAGACGTACAAATAGTGCCAGGAACATCTGCATCTCTTTCCTTGGATTTTGCCAACACTTCTTCT
1130441 GCCAGCAGGTCGTGTAATGGGCCCTTTGGGCTCTTTTTACTCGTTGAATTTAAAGAACTTTCAGG
586 GCCAGCAGGTCGTGTAATGGGCCCTTTGGGCTCTTTTTACTCGTTGAATTTAAAGAACTTTCAGG
1130506 TTTCACAACAGCTGACTCATCTAAATCTGCATCTCTTTGATTTTCTCTAGAAATAATGGGTTCAG
651 TTTCACAACAGCTGACTCATCTAAATCTGCATCTCTTTGATTTTCTCTAGAAATAATGGGTTCAG
1130571 AACTAGACACAGCCCCAGCCCACGAAGTTAAAATATTCGAAGAATTCACAGAAGTAACCTCTGAT
716 AACTAGACACAGCCCCAGCCCACGAAGTTAAAATATTCGAAGAATTCACAGAAGTAACCTCTGAT
1130636 ACAGCTATCTCCGTTTGAGCCTTCCTCTGTTCTTCCAATTGGATTTCCAATAATGACTTTGGCTT
781 ACAGCTATCTCCGTTTGAGCCTTCCTCTGTTCTTCCAATTGGATTTCCAATAATGACTTTGGCTT
1130701 GAAGCCAGGAGCAGGTTTCCAAGCACTTTCCGCAGGCCGTGTAGTTGGTTTCTGCACTGGGAAAG
846 GAAGCCAGGAGCAGGTTTCCAAGCACTTTCCGCAGGCCGTGTAGTTGGTTTCTGCACTGGGAAAG
1130766 AACCAGAAAGTTGGGACTCACCCTTTAGCTCTTTGGTTTCATCATCGACCACAGCAATGTTAGCA
911 AACCAGAAAGTTGGGACTCACCCTTTAGCTCTTTGGTTTCATCATCGACCACAGCAATGTTAGCA
1130831 GCTGAAGAGCTTTTAG
976 GCTGAAGAGCTTTTAG
1130847 GATTGGGAGA
Statistics
Matches: 991, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1000 991 1.00
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (1000 bp):
CCGGTGATATGACGGTGAACCTACGACGGCCGGAGGTGAAAGTCGGTGAAGGACGGCGTTTAGAT
CTGCGCCGAATGGATTATTTTCTCGTAAATCTAATCTCAAAAATGAAATCAGAGTGAGGAAACGA
TCTTTCTGGGTAAAAATGGCGGCGAACGGATGACGGAATGTGGCGGCGGATGGCGTAAGTCGGAC
TTTAGACGGCAGACGTTGTACAGTAGACGGCGAACGCGATGTATAAAGATGGCGGGCGGTGATGG
TTGAGATGAGATGAAATGATGGATGAAAAAAACAAAAAGCACCTTGAACCAAGAGAGAAGCCCGC
TTCTCTCACTAGGTTTGAATTTTGAAAAATTGGTGGAATTCCTTGGATGCGCATTAGCAGTGTTA
ACAGGAACCAGAACTTTTGCTCCCGTGCCCTTCGCTTTGGCTGACTTTTTTCGGCTCCTTTTAGT
TTTTTCAGCCTCAATGAAATTGTCATCATCAATAGGTTCAACATTTGTTGTGGTTACATTGGCAT
AAGACGTACAAATAGTGCCAGGAACATCTGCATCTCTTTCCTTGGATTTTGCCAACACTTCTTCT
GCCAGCAGGTCGTGTAATGGGCCCTTTGGGCTCTTTTTACTCGTTGAATTTAAAGAACTTTCAGG
TTTCACAACAGCTGACTCATCTAAATCTGCATCTCTTTGATTTTCTCTAGAAATAATGGGTTCAG
AACTAGACACAGCCCCAGCCCACGAAGTTAAAATATTCGAAGAATTCACAGAAGTAACCTCTGAT
ACAGCTATCTCCGTTTGAGCCTTCCTCTGTTCTTCCAATTGGATTTCCAATAATGACTTTGGCTT
GAAGCCAGGAGCAGGTTTCCAAGCACTTTCCGCAGGCCGTGTAGTTGGTTTCTGCACTGGGAAAG
AACCAGAAAGTTGGGACTCACCCTTTAGCTCTTTGGTTTCATCATCGACCACAGCAATGTTAGCA
GCTGAAGAGCTTTTAGCAGCTATCT
Found at i:1133808 original size:15 final size:15
Alignment explanation
Indices: 1133788--1133817 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
1133778 ACAGTACTTG
1133788 GTAAATCTTCTCTAC
1 GTAAATCTTCTCTAC
1133803 GTAAATCTTCTCTAC
1 GTAAATCTTCTCTAC
1133818 TGCCTGTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.27, G:0.07, T:0.40
Consensus pattern (15 bp):
GTAAATCTTCTCTAC
Found at i:1139841 original size:2 final size:2
Alignment explanation
Indices: 1139830--1139859 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
1139820 CATATTTGAT
1139830 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1139860 TGTACTTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Done.