Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008003.1 Hibiscus syriacus cultivar Beakdansim tig00110462_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3297763
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 8 of 14
Found at i:1555163 original size:36 final size:37
Alignment explanation
Indices: 1555115--1555195 Score: 112
Period size: 36 Copynumber: 2.2 Consensus size: 37
1555105 ATTATCTCAT
*
1555115 TTTTC-AACAAACATCTACCAAACTTTGAAAAAC-TA
1 TTTTCAAAGAAACATCTACCAAACTTTGAAAAACATA
* * *
1555150 TTTTCAAAGAAACATTTACCAAACTTTGAAAACCATT
1 TTTTCAAAGAAACATCTACCAAACTTTGAAAAACATA
1555187 TTTTCAAAG
1 TTTTCAAAG
1555196 TTGGTTGCCA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
35 5 0.12
36 25 0.62
37 10 0.25
ACGTcount: A:0.43, C:0.20, G:0.05, T:0.32
Consensus pattern (37 bp):
TTTTCAAAGAAACATCTACCAAACTTTGAAAAACATA
Found at i:1556245 original size:30 final size:30
Alignment explanation
Indices: 1556176--1556247 Score: 74
Period size: 30 Copynumber: 2.4 Consensus size: 30
1556166 AGAATGATTG
* *
1556176 TAATTTGTCAAACTATTACAAAATAGGCAC
1 TAATTTATCAAACTATTACAAAATAAGCAC
** * *
1556206 TAAACTATCAAATTATTACAAAATAATC-C
1 TAATTTATCAAACTATTACAAAATAAGCAC
1556235 TTAATTTATCAAA
1 -TAATTTATCAAA
1556248 ATTTATCACT
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
29 1 0.03
30 32 0.97
ACGTcount: A:0.47, C:0.15, G:0.04, T:0.33
Consensus pattern (30 bp):
TAATTTATCAAACTATTACAAAATAAGCAC
Found at i:1558531 original size:33 final size:33
Alignment explanation
Indices: 1558484--1558597 Score: 183
Period size: 33 Copynumber: 3.5 Consensus size: 33
1558474 CTAGCGGAGC
*
1558484 TGGCGGTGGCTGAAGTGGGTTTGGAGAAAGCAA
1 TGGCGGTGGCTGAAGTGGGTTTGGAGGAAGCAA
*
1558517 TGGCGGTGGTTGAAGTGGGTTTGGAGGAAGCAA
1 TGGCGGTGGCTGAAGTGGGTTTGGAGGAAGCAA
*
1558550 TGGCGGTGGCTGAAGTGGGTTTGGAGGAAGCAG
1 TGGCGGTGGCTGAAGTGGGTTTGGAGGAAGCAA
* *
1558583 TGGCGGAGGCAGAAG
1 TGGCGGTGGCTGAAG
1558598 CTGATTCGGG
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 75 1.00
ACGTcount: A:0.22, C:0.09, G:0.49, T:0.20
Consensus pattern (33 bp):
TGGCGGTGGCTGAAGTGGGTTTGGAGGAAGCAA
Found at i:1571841 original size:20 final size:21
Alignment explanation
Indices: 1571804--1571842 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
1571794 TTCAAATTTA
*
1571804 AAATGTTAATATAATAAATCC
1 AAATGTTAAAATAATAAATCC
*
1571825 AAAT-TTAAAATATTAAAT
1 AAATGTTAAAATAATAAAT
1571843 GAAAATTTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (21 bp):
AAATGTTAAAATAATAAATCC
Found at i:1572498 original size:19 final size:19
Alignment explanation
Indices: 1572476--1572520 Score: 56
Period size: 21 Copynumber: 2.3 Consensus size: 19
1572466 TCAATAATCT
1572476 TATTTT-TTGATAATATTA
1 TATTTTATTGATAATATTA
*
1572494 CTATTTTTATTTATAATATTA
1 -TA-TTTTATTGATAATATTA
1572515 TATTTT
1 TATTTT
1572521 GTGAACTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 6 0.26
20 6 0.26
21 11 0.48
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (19 bp):
TATTTTATTGATAATATTA
Found at i:1579917 original size:10 final size:9
Alignment explanation
Indices: 1579882--1579980 Score: 90
Period size: 10 Copynumber: 10.3 Consensus size: 9
1579872 GCTGCTGGAA
*
1579882 ACCGGTTTA
1 ACCGGTTTG
*
1579891 ACCGGTTTTCA
1 ACCGG-TTT-G
1579902 ACCGGTTCTG
1 ACCGGTT-TG
1579912 ACCGGTTTG
1 ACCGGTTTG
*
1579921 ACCGGTTTCA
1 ACCGGTTT-G
*
1579931 ACCGGTTCG
1 ACCGGTTTG
1579940 AACCGGTTTG
1 -ACCGGTTTG
*
1579950 ACCGGTCTG
1 ACCGGTTTG
1579959 ACTCGGTTTG
1 AC-CGGTTTG
*
1579969 ACCGGTCTG
1 ACCGGTTTG
1579978 ACC
1 ACC
1579981 CGACCCGACC
Statistics
Matches: 76, Mismatches: 8, Indels: 12
0.79 0.08 0.12
Matches are distributed among these distances:
9 34 0.45
10 35 0.46
11 7 0.09
ACGTcount: A:0.15, C:0.28, G:0.27, T:0.29
Consensus pattern (9 bp):
ACCGGTTTG
Found at i:1579926 original size:19 final size:19
Alignment explanation
Indices: 1579883--1579980 Score: 87
Period size: 19 Copynumber: 5.1 Consensus size: 19
1579873 CTGCTGGAAA
* * *
1579883 CCGGTTTAACCGGTTTTCAA
1 CCGGTTTGACCGGTTCT-GA
1579903 CCGGTTCTGACCGGTT-TGA
1 CCGGTT-TGACCGGTTCTGA
*
1579922 CCGGTTTCAACCGGTTC-GAA
1 CCGGTTT-GACCGGTTCTG-A
1579942 CCGGTTTGACCGG-TCTGA
1 CCGGTTTGACCGGTTCTGA
1579960 CTCGGTTTGACCGG-TCTGA
1 C-CGGTTTGACCGGTTCTGA
1579979 CC
1 CC
1579981 CGACCCGACC
Statistics
Matches: 68, Mismatches: 4, Indels: 14
0.79 0.05 0.16
Matches are distributed among these distances:
18 6 0.09
19 39 0.57
20 15 0.22
21 8 0.12
ACGTcount: A:0.14, C:0.29, G:0.28, T:0.30
Consensus pattern (19 bp):
CCGGTTTGACCGGTTCTGA
Found at i:1579944 original size:29 final size:30
Alignment explanation
Indices: 1579881--1579955 Score: 118
Period size: 29 Copynumber: 2.5 Consensus size: 30
1579871 GGCTGCTGGA
*
1579881 AACCGGTTTAACCGGTTTTCAACCGGTTCTG
1 AACCGGTTTGACCGG-TTTCAACCGGTTCTG
1579912 -ACCGGTTTGACCGGTTTCAACCGGTTC-G
1 AACCGGTTTGACCGGTTTCAACCGGTTCTG
1579940 AACCGGTTTGACCGGT
1 AACCGGTTTGACCGGT
1579956 CTGACTCGGT
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 1 0.02
29 28 0.67
30 13 0.31
ACGTcount: A:0.17, C:0.27, G:0.27, T:0.29
Consensus pattern (30 bp):
AACCGGTTTGACCGGTTTCAACCGGTTCTG
Found at i:1579965 original size:29 final size:28
Alignment explanation
Indices: 1579882--1579980 Score: 101
Period size: 29 Copynumber: 3.4 Consensus size: 28
1579872 GCTGCTGGAA
* *
1579882 ACCGGTTTAACCGGTTTTCAACCGGTTCTG
1 ACCGGTTTGACCGG-TCTCAACCGGTTC-G
*
1579912 ACCGGTTTGACCGGTTTCAACCGGTTCG
1 ACCGGTTTGACCGGTCTCAACCGGTTCG
* *
1579940 AACCGGTTTGACCGGTCT-GACTCGGTTTG
1 -ACCGGTTTGACCGGTCTCAAC-CGGTTCG
*
1579969 ACCGGTCTGACC
1 ACCGGTTTGACC
1579981 CGACCCGACC
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
28 14 0.23
29 35 0.56
30 13 0.21
ACGTcount: A:0.15, C:0.28, G:0.27, T:0.29
Consensus pattern (28 bp):
ACCGGTTTGACCGGTCTCAACCGGTTCG
Found at i:1579987 original size:5 final size:5
Alignment explanation
Indices: 1579977--1580034 Score: 62
Period size: 5 Copynumber: 10.8 Consensus size: 5
1579967 TGACCGGTCT
* *
1579977 GACCC GACCC GACCGTT GACCC GACCC GACCC GACCGTT GACCC GACCC
1 GACCC GACCC GACC--C GACCC GACCC GACCC GACC--C GACCC GACCC
1580026 GACCC GACC
1 GACCC GACC
1580035 GTTGACCGTT
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
5 37 0.82
7 8 0.18
ACGTcount: A:0.19, C:0.52, G:0.22, T:0.07
Consensus pattern (5 bp):
GACCC
Found at i:1580003 original size:22 final size:22
Alignment explanation
Indices: 1579977--1580041 Score: 130
Period size: 22 Copynumber: 3.0 Consensus size: 22
1579967 TGACCGGTCT
1579977 GACCCGACCCGACCGTTGACCC
1 GACCCGACCCGACCGTTGACCC
1579999 GACCCGACCCGACCGTTGACCC
1 GACCCGACCCGACCGTTGACCC
1580021 GACCCGACCCGACCGTTGACC
1 GACCCGACCCGACCGTTGACC
1580042 GTTGACCGTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 43 1.00
ACGTcount: A:0.18, C:0.49, G:0.23, T:0.09
Consensus pattern (22 bp):
GACCCGACCCGACCGTTGACCC
Found at i:1580043 original size:7 final size:7
Alignment explanation
Indices: 1580031--1580068 Score: 76
Period size: 7 Copynumber: 5.4 Consensus size: 7
1580021 GACCCGACCC
1580031 GACCGTT
1 GACCGTT
1580038 GACCGTT
1 GACCGTT
1580045 GACCGTT
1 GACCGTT
1580052 GACCGTT
1 GACCGTT
1580059 GACCGTT
1 GACCGTT
1580066 GAC
1 GAC
1580069 TTTCTTTGAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.16, C:0.29, G:0.29, T:0.26
Consensus pattern (7 bp):
GACCGTT
Found at i:1587264 original size:10 final size:9
Alignment explanation
Indices: 1587229--1587327 Score: 90
Period size: 10 Copynumber: 10.3 Consensus size: 9
1587219 GCTGCTGGAA
*
1587229 ACCGGTTTA
1 ACCGGTTTG
*
1587238 ACCGGTTTTCA
1 ACCGG-TTT-G
1587249 ACCGGTTCTG
1 ACCGGTT-TG
1587259 ACCGGTTTG
1 ACCGGTTTG
*
1587268 ACCGGTTTCA
1 ACCGGTTT-G
*
1587278 ACCGGTTCG
1 ACCGGTTTG
1587287 AACCGGTTTG
1 -ACCGGTTTG
*
1587297 ACCGGTCTG
1 ACCGGTTTG
1587306 ACTCGGTTTG
1 AC-CGGTTTG
*
1587316 ACCGGTCTG
1 ACCGGTTTG
1587325 ACC
1 ACC
1587328 CGACCCGACC
Statistics
Matches: 76, Mismatches: 8, Indels: 12
0.79 0.08 0.12
Matches are distributed among these distances:
9 34 0.45
10 35 0.46
11 7 0.09
ACGTcount: A:0.15, C:0.28, G:0.27, T:0.29
Consensus pattern (9 bp):
ACCGGTTTG
Found at i:1587273 original size:19 final size:19
Alignment explanation
Indices: 1587230--1587327 Score: 87
Period size: 19 Copynumber: 5.1 Consensus size: 19
1587220 CTGCTGGAAA
* * *
1587230 CCGGTTTAACCGGTTTTCAA
1 CCGGTTTGACCGGTTCT-GA
1587250 CCGGTTCTGACCGGTT-TGA
1 CCGGTT-TGACCGGTTCTGA
*
1587269 CCGGTTTCAACCGGTTC-GAA
1 CCGGTTT-GACCGGTTCTG-A
1587289 CCGGTTTGACCGG-TCTGA
1 CCGGTTTGACCGGTTCTGA
1587307 CTCGGTTTGACCGG-TCTGA
1 C-CGGTTTGACCGGTTCTGA
1587326 CC
1 CC
1587328 CGACCCGACC
Statistics
Matches: 68, Mismatches: 4, Indels: 14
0.79 0.05 0.16
Matches are distributed among these distances:
18 6 0.09
19 39 0.57
20 15 0.22
21 8 0.12
ACGTcount: A:0.14, C:0.29, G:0.28, T:0.30
Consensus pattern (19 bp):
CCGGTTTGACCGGTTCTGA
Found at i:1587291 original size:29 final size:30
Alignment explanation
Indices: 1587228--1587302 Score: 118
Period size: 29 Copynumber: 2.5 Consensus size: 30
1587218 GGCTGCTGGA
*
1587228 AACCGGTTTAACCGGTTTTCAACCGGTTCTG
1 AACCGGTTTGACCGG-TTTCAACCGGTTCTG
1587259 -ACCGGTTTGACCGGTTTCAACCGGTTC-G
1 AACCGGTTTGACCGGTTTCAACCGGTTCTG
1587287 AACCGGTTTGACCGGT
1 AACCGGTTTGACCGGT
1587303 CTGACTCGGT
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 1 0.02
29 28 0.67
30 13 0.31
ACGTcount: A:0.17, C:0.27, G:0.27, T:0.29
Consensus pattern (30 bp):
AACCGGTTTGACCGGTTTCAACCGGTTCTG
Found at i:1587312 original size:29 final size:28
Alignment explanation
Indices: 1587229--1587327 Score: 101
Period size: 29 Copynumber: 3.4 Consensus size: 28
1587219 GCTGCTGGAA
* *
1587229 ACCGGTTTAACCGGTTTTCAACCGGTTCTG
1 ACCGGTTTGACCGG-TCTCAACCGGTTC-G
*
1587259 ACCGGTTTGACCGGTTTCAACCGGTTCG
1 ACCGGTTTGACCGGTCTCAACCGGTTCG
* *
1587287 AACCGGTTTGACCGGTCT-GACTCGGTTTG
1 -ACCGGTTTGACCGGTCTCAAC-CGGTTCG
*
1587316 ACCGGTCTGACC
1 ACCGGTTTGACC
1587328 CGACCCGACC
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
28 14 0.23
29 35 0.56
30 13 0.21
ACGTcount: A:0.15, C:0.28, G:0.27, T:0.29
Consensus pattern (28 bp):
ACCGGTTTGACCGGTCTCAACCGGTTCG
Found at i:1587334 original size:5 final size:5
Alignment explanation
Indices: 1587324--1587381 Score: 62
Period size: 5 Copynumber: 10.8 Consensus size: 5
1587314 TGACCGGTCT
* *
1587324 GACCC GACCC GACCGTT GACCC GACCC GACCC GACCGTT GACCC GACCC
1 GACCC GACCC GACC--C GACCC GACCC GACCC GACC--C GACCC GACCC
1587373 GACCC GACC
1 GACCC GACC
1587382 GTTGACCGTT
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
5 37 0.82
7 8 0.18
ACGTcount: A:0.19, C:0.52, G:0.22, T:0.07
Consensus pattern (5 bp):
GACCC
Found at i:1587350 original size:22 final size:22
Alignment explanation
Indices: 1587324--1587388 Score: 130
Period size: 22 Copynumber: 3.0 Consensus size: 22
1587314 TGACCGGTCT
1587324 GACCCGACCCGACCGTTGACCC
1 GACCCGACCCGACCGTTGACCC
1587346 GACCCGACCCGACCGTTGACCC
1 GACCCGACCCGACCGTTGACCC
1587368 GACCCGACCCGACCGTTGACC
1 GACCCGACCCGACCGTTGACC
1587389 GTTGACCGTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 43 1.00
ACGTcount: A:0.18, C:0.49, G:0.23, T:0.09
Consensus pattern (22 bp):
GACCCGACCCGACCGTTGACCC
Found at i:1587390 original size:7 final size:7
Alignment explanation
Indices: 1587378--1587415 Score: 76
Period size: 7 Copynumber: 5.4 Consensus size: 7
1587368 GACCCGACCC
1587378 GACCGTT
1 GACCGTT
1587385 GACCGTT
1 GACCGTT
1587392 GACCGTT
1 GACCGTT
1587399 GACCGTT
1 GACCGTT
1587406 GACCGTT
1 GACCGTT
1587413 GAC
1 GAC
1587416 TTTCTTTGAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.16, C:0.29, G:0.29, T:0.26
Consensus pattern (7 bp):
GACCGTT
Found at i:1608616 original size:35 final size:34
Alignment explanation
Indices: 1608536--1608647 Score: 111
Period size: 35 Copynumber: 3.2 Consensus size: 34
1608526 TCTAAACCTT
* *
1608536 AAATTGAATTATTTT-AGAATTTGGGGTTTAAAATT
1 AAATTGAATTATTTTGA-AATTT-GGGTTTAGAATA
*
1608571 TAATTGAATTATTTTGAAATTTAGGGTTTAGAATA
1 AAATTGAATTATTTTGAAATTT-GGGTTTAGAATA
* * *
1608606 AAATTAAATTACTTTGGAAA-TTGGAGTTTAGAATG
1 AAATTGAATTA-TTTTGAAATTTGG-GTTTAGAATA
1608641 AAATTGA
1 AAATTGA
1608648 GAACTATTTT
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
34 2 0.03
35 55 0.85
36 8 0.12
ACGTcount: A:0.39, C:0.01, G:0.18, T:0.42
Consensus pattern (34 bp):
AAATTGAATTATTTTGAAATTTGGGTTTAGAATA
Found at i:1622130 original size:173 final size:176
Alignment explanation
Indices: 1621841--1622192 Score: 530
Period size: 173 Copynumber: 2.0 Consensus size: 176
1621831 TGGTGTGACA
* * *
1621841 TCTGATAAATTATCTTTCAAAGTAACAACTTTATATGAAAATTTTGGCTCGCTGCAAAAGCATTT
1 TCTGATAAATTATCTTTCAAAGTAACAACTTTACATGAAAATTTTGACTCGCTGCAAAAGAATTT
* *
1621906 AATCTGATATGAATATGCAGTTGAAGCTTTAGGTTGAACTCTGTGGAAAATCTTCAATGTAAATC
66 AATCTGATATGAATATGCAGTTGAAGCTTTAGATTGAACTCTGTGGAAAATCTTCAATATAAATC
*
1621971 GTTC-AT-ATC-ATGCATTCATTTTATGTCAAAACCACTTTATATG
131 GTTCAATAATCTATGCAATCATTTTATGTCAAAACCACTTTATATG
** * * *
1622014 TCTGATATTTTATCTTTTAAATTAACAACTTTACATGAAAATTTTTACTCGCTGCAAAAGAATTT
1 TCTGATAAATTATCTTTCAAAGTAACAACTTTACATGAAAATTTTGACTCGCTGCAAAAGAATTT
*
1622079 CATCTGATATGAATATGCAGTTGAAGCTTTAGATTGAACTCTGTGGAAAATCTTCAATATAAATC
66 AATCTGATATGAATATGCAGTTGAAGCTTTAGATTGAACTCTGTGGAAAATCTTCAATATAAATC
1622144 GTTCATATAATCATATTATGCAATCATTTTATGTCAAAACCACTTTATA
131 GTTCA-ATAATC----TATGCAATCATTTTATGTCAAAACCACTTTATA
1622193 CATAGTAAAA
Statistics
Matches: 159, Mismatches: 12, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
173 123 0.77
175 2 0.01
176 3 0.02
181 31 0.19
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (176 bp):
TCTGATAAATTATCTTTCAAAGTAACAACTTTACATGAAAATTTTGACTCGCTGCAAAAGAATTT
AATCTGATATGAATATGCAGTTGAAGCTTTAGATTGAACTCTGTGGAAAATCTTCAATATAAATC
GTTCAATAATCTATGCAATCATTTTATGTCAAAACCACTTTATATG
Found at i:1622255 original size:29 final size:29
Alignment explanation
Indices: 1622222--1622296 Score: 150
Period size: 29 Copynumber: 2.6 Consensus size: 29
1622212 TGTTTTTGTT
1622222 ATTCACAATTCATGATTTTTTTTATAACA
1 ATTCACAATTCATGATTTTTTTTATAACA
1622251 ATTCACAATTCATGATTTTTTTTATAACA
1 ATTCACAATTCATGATTTTTTTTATAACA
1622280 ATTCACAATTCATGATT
1 ATTCACAATTCATGATT
1622297 AATAGGTAAC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.35, C:0.15, G:0.04, T:0.47
Consensus pattern (29 bp):
ATTCACAATTCATGATTTTTTTTATAACA
Found at i:1638588 original size:39 final size:39
Alignment explanation
Indices: 1638497--1638589 Score: 107
Period size: 39 Copynumber: 2.4 Consensus size: 39
1638487 ATTATTAATC
* *
1638497 CCCTAAATCCCTAAACTTAAAACCACACATCTTTATGAA
1 CCCTAAATCCCTAAACTTAAAACCACAAATCTCTATGAA
* * *
1638536 CCCTAAACCCCTAAACTTAAATCCATAAATCTACTA-GAA
1 CCCTAAATCCCTAAACTTAAAACCACAAATCT-CTATGAA
* *
1638575 CCTTAAATTCCTAAA
1 CCCTAAATCCCTAAA
1638590 TTTTCAATAC
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
39 43 0.96
40 2 0.04
ACGTcount: A:0.42, C:0.30, G:0.02, T:0.26
Consensus pattern (39 bp):
CCCTAAATCCCTAAACTTAAAACCACAAATCTCTATGAA
Found at i:1642649 original size:14 final size:16
Alignment explanation
Indices: 1642613--1642649 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
1642603 TATTAATGTA
1642613 TGAATCATTTATATTTT
1 TGAAT-ATTTATATTTT
1642630 TGAATATTT-TATTTT
1 TGAATATTTATATTTT
1642645 T-AATA
1 TGAATA
1642650 AGAATTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 4 0.20
15 7 0.35
16 4 0.20
17 5 0.25
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.59
Consensus pattern (16 bp):
TGAATATTTATATTTT
Found at i:1643361 original size:128 final size:127
Alignment explanation
Indices: 1643110--1643367 Score: 387
Period size: 129 Copynumber: 2.0 Consensus size: 127
1643100 AATTTTCTTC
* *
1643110 TAATTAGGTGGTGACATGTGTCACCAATAACATATATCATGATCAGTGTTAACACATGTCAGATC
1 TAATTAGGTGGTGACATGTGTCACCAATAACACATATCATGATCAGTGCTAACACATGTCAGATC
** *
1643175 CTGGTTAAATGATTAATTTATTAAATTTTATTAATTTAGGACCAAATTGATAGCATATATAAA
66 CTAATTAAATGATTAATTTATTAAATTCTATTAATTTAGGACCAAATTGATA-CATATATAAA
* * *
1643238 TAATTAGGTGGTGACATGTGTCACCAATGACACGTGTCATGATCATGTGCTAACACATGTCAGAT
1 TAATTAGGTGGTGACATGTGTCACCAATAACACATATCATGATCA-GTGCTAACACATGTCAGAT
*
1643303 CCTAATTAAATGATTAATTTATTAAATTCTATTTAATTTAGGATCAAATTGAT---TATATAAA
65 CCTAATTAAATGATTAATTTATTAAATTCTA-TTAATTTAGGACCAAATTGATACATATATAAA
1643364 TAAT
1 TAAT
1643368 AAAGACTGAA
Statistics
Matches: 119, Mismatches: 9, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
126 12 0.10
128 41 0.34
129 46 0.39
130 20 0.17
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (127 bp):
TAATTAGGTGGTGACATGTGTCACCAATAACACATATCATGATCAGTGCTAACACATGTCAGATC
CTAATTAAATGATTAATTTATTAAATTCTATTAATTTAGGACCAAATTGATACATATATAAA
Found at i:1643784 original size:35 final size:35
Alignment explanation
Indices: 1643745--1643820 Score: 125
Period size: 35 Copynumber: 2.2 Consensus size: 35
1643735 AATTGAATTT
* *
1643745 AATTGAATTATTTTGGAATTTAGGGTTTAGAATGA
1 AATTGAATTACTTTGGAAATTAGGGTTTAGAATGA
*
1643780 AATTGAATTACTTTGGAAATTGGGGTTTAGAATGA
1 AATTGAATTACTTTGGAAATTAGGGTTTAGAATGA
1643815 AATTGA
1 AATTGA
1643821 GGACTGTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.36, C:0.01, G:0.24, T:0.39
Consensus pattern (35 bp):
AATTGAATTACTTTGGAAATTAGGGTTTAGAATGA
Found at i:1663975 original size:540 final size:540
Alignment explanation
Indices: 1644686--1671378 Score: 50773
Period size: 540 Copynumber: 49.7 Consensus size: 540
1644676 GAATTCCAAA
* * *
1644686 TGATGACTCAAACTTTTTATGTGACCCATCATTCCATATCCGGGATGTATTTATATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
* *
1644751 AGTTCAATTATTTGATTCCATAACTTAAACTTTATTAATATATAATAAGTGAAATAGAACGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
1644816 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1644881 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1644946 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
*
1645011 ATTCCTTATGTTTTATCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1645076 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1645141 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1645206 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1645226 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTA-TTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1645290 AG-TCAATTATTTGATTCCATAATTTAAACTTTATT-A-ATAT-ATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
* *
1645351 AGAGAGTGAGAAAAATTTGGGATTATCCACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
*
1645416 AATTAGCATATGACGGTGCTTTGAGAGTTTTTAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1645481 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1645546 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1645611 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1645676 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1645741 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1645761 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1645826 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
*
1645891 AGAGAGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGG-GAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
*
1645955 AATTAGCATAAGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1646020 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1646085 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1646150 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1646215 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATA-TTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
*
1646279 TTATTTTGAATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1646299 TGATGACCCAAAC-TTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1646363 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
1646428 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1646493 -ATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1646557 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1646622 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1646687 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1646752 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATA-TTTCGTATCAA-TTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1646815 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1646835 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
*
1646900 AGTTCAATTATTTGATTCCATAAATTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
*
1646965 AGAGTGTGAGAAAAATTTGGGATTATACATGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1647030 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
* *
1647095 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAATGGGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1647160 ATTCCTTATGTTTTTGTCATATGATCGTTGTAGGTGTGGATAT-A-ATGGTGGTAGGTGACTTAA
326 ATTCCTTATG-TTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAA
1647223 AGTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTAC-TTT-TC
390 AGTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTC
*
1647286 CTTGTAGTTGATTTAATTTATTATTCTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAA
455 CTTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAA
1647351 GTTATTTTGGATTCTCGATAT
520 GTTATTTTGGATTCTCGATAT
1647372 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1647437 AGTTCAATTATTTGATTCCATAATTTAAACTTTATT-A-ATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
1647500 AGAGTGTGAGAAAAATTTGGGATTATACAC-GTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1647564 -ATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1647628 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1647693 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
* *
1647758 GTTGTCATTCAGGCGAGAGATTTATTTCTTTTCTTAATCTTTTGGATTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
*
1647823 TTGTAGTTGATTTAATTTATTATTCTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1647888 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1647908 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1647973 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
*
1648038 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAA-CATTTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1648102 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1648167 AATTTTAGAATGAGAGGG-AAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1648231 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1648296 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1648361 TTGTAGTTGATTTAATTTATTA-TTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1648425 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1648445 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1648510 AGTTCAATTATTTGATTCCATAATTTAAACTTTATT-A-ATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
* *
1648573 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATATAGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
* * *
1648638 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAAAATTAGAGCAAAAGGGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1648703 AATTTTAGAATGAGAGGG-AAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1648767 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1648832 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1648897 TTGTAGTTGATTTAATTTATTA-TTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1648961 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1648981 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCC-GGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
*
1649045 AGTTCAATTATATGATTCC-TAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
*
1649109 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCATTTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1649174 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1649239 AATTTTAGAATGAGAGGG-AAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1649303 ATTCCTTATGTTTTGTCATATGATCGTTGTA-GTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1649367 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1649432 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1649497 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
*
1649517 TGATGACCCAAAC-TTTTATATGACCCATCATCCCATAT-CGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
*
1649580 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAACGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
1649645 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
* *
1649710 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAG-ATTAGAGCGAAAGAGAGTACGTGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1649774 AATTTTAGAATGAGAGGG-AAAAATAATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTC
261 AATTTTAGAATGAGAGGGAAAAAAT-ATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTC
1649838 TATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAA
325 TATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAA
1649903 AGTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTC
390 AGTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTC
*
1649968 CTTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTCTCAATTTAGTCTTTAAA
455 CTTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAA
1650033 GTTATTTTGGATTCTCGATAT
520 GTTATTTTGGATTCTCGATAT
1650054 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1650119 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
1650184 AGAGTGTGAG-AAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGT-GGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1650247 AATTAGCATATGACGGTGCTTTGAGAGTTTT-AAAA-AGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1650310 AATTTTAGAATGAGAGGG-AAAAA-ATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1650373 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
*
1650438 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATTTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1650503 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1650568 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1650588 TGATGACCCAAAC-TTTT-TATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1650651 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
*
1650716 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTAGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
* *
1650781 AATTAGCATATGACGATGCTTTGAGAGTTTTAAAAAGAAAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1650846 AATTTTAGAATGAGAGGGAAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTC
261 AATTTTAGAATGAGAGGG-AAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTC
1650911 TATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAA
325 TATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAA
1650976 AGTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTC
390 AGTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTC
*
1651041 CTTGTAGTTGATTTAATTTGTTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAA
455 CTTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAA
1651106 GTTATTTTGGATTCTCGATAT
520 GTTATTTTGGATTCTCGATAT
* *
1651127 TGATTACCCAAACTTTTTATATGACCCATCATTCCATATCCGAGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
* * *
1651192 AGTTCAATTATATGATTCCCTAACTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
1651257 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1651322 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
* *
1651387 AATTTTAGAATGAGAGTGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGGTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
*
1651452 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGGCTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1651517 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTAC-TTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1651581 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
*
1651646 TTATTTTGGATTCTTGATAT
521 TTATTTTGGATTCTCGATAT
1651666 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1651731 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
1651796 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1651861 -ATTAGCATATGACGGTGCTTTGAGAGTTTT-AAAAGAGAATTAGAGCG-AA-AGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
*
1651922 AA-TTTAGAATGTGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1651986 ATTCCTTATG-TTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1652050 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1652115 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1652180 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1652200 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1652265 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
1652330 AGAGTGTGAGAAAAATTTGGGATTATACAC-GTGATGGTCAACCGTTTTTAATGT-GGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1652393 AATTAGCATATGACGGTGCTTTGAGAGTTTT-AAAA-AGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
* *
1652456 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAATGGGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1652521 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1652586 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
*
1652651 TTGTAGTTGATTTAATTTATTATTCTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1652716 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1652736 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1652801 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
1652866 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1652931 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
* *
1652996 AATTTTAGAATGAGA-GGAAAAAATATGATCTTTTGAATGGGAGTCCATA-TTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1653059 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1653124 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
*
1653189 TTGTAGTTGATTTAATTTATTATTCTCATCCCTAT-ATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1653253 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1653273 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1653338 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
1653403 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGT-GGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1653467 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGA-
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1653531 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1653596 ATTCCTTATGTTTTGTCATATGATCGTTGTA-G-GTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1653659 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAAT-TTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1653723 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1653788 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1653808 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1653873 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
1653938 AGAGTGTGAGAAAAATTTGGGATTATACAC-GTGATGGTCAACCG-TTTTAATGT-GGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1654000 AATTAGCATATGAC-G-GCTTTGAGAGTTTT-AAAAGA-AATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1654061 AATTTTAGAATGAGAGGGAAAAAAATATGATC-TTTGAACGTGAGTCCATATTTATTGTTGTCTC
261 AATTTTAGAATGAGAGGG-AAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTC
1654125 TATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAA
325 TATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAA
1654190 AGTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTC
390 AGTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTC
*
1654255 CTTGTAGTTGATTTAATTTGTTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAA
455 CTTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAA
1654320 GTTATTTTGGATTCTCGATAT
520 GTTATTTTGGATTCTCGATAT
* *
1654341 TGATTACCCAAACTTTTTATATGACCCATCATTCCATATCCGAGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
* *
1654406 AGTTCAATTA-TTGATTCCCTAACTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
*
1654470 AGAGTGTGAG-AAAATTTGGGATTATACACGGTGATGGTCAACCATTTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1654534 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
*
1654599 AATTTTAGAATGAGA-GGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGGTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1654663 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTG-CTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1654727 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1654792 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAA-TTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1654856 TTATTTTGGATTCT-GATAT
521 TTATTTTGGATTCTCGATAT
1654875 TGATGACCC-AACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1654939 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
1655004 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1655069 AATTAGCATATGACGGTGCTTTGAGAGTTTT-AAAA-AGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1655132 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1655197 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1655262 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
*
1655327 TTGTAGTTGATTAAATTTATTATTTTCATCCCTAT-ATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1655391 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1655411 TGATGACCCAAAC-TTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1655475 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
1655540 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGT-GGGG-GAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1655603 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
* *
1655668 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAATGGGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1655733 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATAT-A-ATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1655796 GTTGTCATTCAGTCGAGAGATTTA-TTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
*
1655860 TTGTAGTTGATTTAATTTATTATTCTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1655925 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1655945 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1656010 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATAT-ATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
1656074 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1656139 AATTAGCATATGACGGTGCTTTGAGAGTTTT-AAAA-AGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1656202 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1656267 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
*
1656332 GTTGTCATTCAG-CGAGAGATTTATTTCTTTTCTTAATCTTTTGGATTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
* *
1656396 TTGTAGTTGATTTAATTT-TTATTCTCATCCATA-AATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1656459 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1656479 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1656544 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
1656609 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGT-GGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1656673 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1656738 AATTTTAGAATGAGAGGG-AAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1656802 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1656867 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1656932 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1656997 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1657017 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1657082 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
* *
1657147 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATATAGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1657212 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
*
1657277 AATTTTAGAATGAGAGGG-AAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGGTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
*
1657341 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGGCTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1657406 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1657471 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
*
1657536 TTATTTTGGATTCACGATAT
521 TTATTTTGGATTCTCGATAT
1657556 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1657621 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
1657686 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGT-GGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1657750 AATTAGCATATGACGGTGCTTTGAGAGTTTT-AAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1657814 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGA-TCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1657878 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1657943 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1658008 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1658073 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1658093 TGATGACCCAAACTTTTTATATGACCCAT-ATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1658157 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCG-AAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
1658221 AGAGTGTGAG-AAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1658285 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
* *
1658350 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAATGGGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1658415 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1658480 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
*
1658545 TTGTAGTTGATTTAATTTATTATTCTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1658610 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1658630 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1658695 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
1658760 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1658825 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1658890 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1658955 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
* * *
1659020 GTTGTCATTCAGGCGAGAGACTTATTTCTTTTCTTAATCTTTTGGATTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
*
1659085 TTGTAGTTGATTTAATTTATTATTCTCAT-CCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1659149 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1659169 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1659234 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
1659299 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1659364 AATTAGCATATGACGGTGCTTTGAGAGTTTT-AAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1659428 AATTTTAGAATGAGAGGG-AAAAATATGATCTTTTGAACGTGAGTCCATA--TATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1659490 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1659555 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1659620 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1659685 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1659705 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
*
1659770 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGTGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
* *
1659835 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATATAGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
*
1659900 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAAAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1659965 AATTTTAGAATGAGAGGG-AAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1660029 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1660094 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1660159 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1660224 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1660244 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
*
1660309 AGTTCAATTA--TGATTCCCTAATTTAAACTTTATT-A-ATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
*
1660370 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCATTTTTAATGT-GGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1660434 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
*
1660499 AATTTTAGAAAGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1660564 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1660629 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1660694 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1660759 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1660779 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
*
1660844 AGTTCAATTATATGATTCC-TAA-TTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
1660907 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
* *
1660972 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTACGTGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1661037 AATTTTAGAATGAGAGGG-AAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1661101 ATTCCTTATG--TT-T-ATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1661162 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1661227 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1661292 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1661312 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
*
1661377 AGTTCAATTATATGATTCC-TAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
*
1661441 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCATTTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1661506 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
*
1661571 AATTTTAGAAAGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1661636 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1661701 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1661766 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1661831 TTA-TTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1661850 TGATGACCCAAACTTTTTATATGACCCATCA-TCCATAT-CGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
* *
1661913 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAACAAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
1661978 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
* *
1662043 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTACGTGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1662108 AATTTTAGAATGAGAGGG-AAAAATAATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTC
261 AATTTTAGAATGAGAGGGAAAAAAT-ATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTC
*
1662172 TATTCCTTATGTTTTATCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAA
325 TATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAA
*
1662237 AGTTGTCATTTAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTC
390 AGTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTC
1662302 CTTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAA
455 CTTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAA
1662367 GTTATTTTGGATTCTCGATAT
520 GTTATTTTGGATTCTCGATAT
1662388 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1662453 AGTTCAATTATTTGATTCCATAATTTAAACTTTATT-ATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
*
1662517 AGA--GTGAGAAAAATTTGGGATTATCCACGGTGATGGTCAACCGTTTTTAATGT-GGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1662579 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1662644 AATTTTAGAATGAGAGGG-AAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
*
1662708 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATACGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1662773 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1662838 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1662903 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1662923 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTT-CATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1662987 AGTTCAATTATTTGATTCCATAATTTAAACTTTATT-A-ATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
* *
1663050 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACTGTTTTTAATGTAGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1663115 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGA-AATTAGAGCG-AA-AGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1663177 AATTTTAGAATGAGA-GGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1663241 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTA-G-G-CTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1663303 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1663368 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
*
1663433 TTATTTTGGATTCACGATAT
521 TTATTTTGGATTCTCGATAT
1663453 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1663518 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
1663583 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1663648 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
*
1663713 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGATTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1663778 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1663843 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1663908 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1663973 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1663993 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1664058 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
1664123 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1664188 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
*
1664253 AATTTTAGAATGAGAGGG-AAAAATATGATCTTTTGAATG-GAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1664316 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1664381 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
*
1664446 TTGTAGTTGATTTAATTTATTATTCTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1664511 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1664531 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1664596 AGTTCAATTATTTGATTCCATAATTTAAACTTTATT-A-ATAT-ATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
1664658 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1664723 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1664788 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1664853 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
* *
1664918 GTTGTCATTCAGGCGAGAGATTTATTTCTTTTCTTAATCTTTTGGATTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
* *
1664983 TTGTAGTTGATTTAATTTATTATTCTCATCCATATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1665048 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1665068 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1665133 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
1665198 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1665263 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1665328 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1665393 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1665458 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1665523 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1665588 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1665608 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
*
1665673 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGTGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
* *
1665738 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATATAGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1665803 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGA-AATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1665867 AATTTTAGAATGAGAGGG-AAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1665931 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1665996 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1666061 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1666126 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1666146 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
* *
1666211 AGTTCAATTATATGATTCCCTAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
**
1666276 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCAATTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1666341 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
*
1666406 AATTTTAGAAAGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1666471 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1666536 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1666601 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1666666 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1666686 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
* * *
1666751 AGTTCAATTATATGATTCCCTAACTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
1666816 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
* *
1666881 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTACGTGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1666946 AATTTTAGAATGAGAGGG-AAAAATAATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTC
261 AATTTTAGAATGAGAGGGAAAAAAT-ATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTC
*
1667010 TATTCCTTATGTTTTATCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAA
325 TATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAA
1667075 AGTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTC
390 AGTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTC
1667140 CTTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAA
455 CTTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAA
1667205 GTTATTTTGGATTCTCGATAT
520 GTTATTTTGGATTCTCGATAT
1667226 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
* *
1667291 AGTTCAATTATATGATTCCCTAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
*
1667356 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCATTTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1667421 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
*
1667486 AATTTTAGAAAGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
*
1667551 ATTCCTTATGTTTTTTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1667616 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1667681 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1667746 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
* *
1667766 TGATGACCCAAACTTTTTATATGACCCATCATCCCATATTCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
* *
1667831 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAACAAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
1667896 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
* *
1667961 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTACGTGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1668026 AATTTTAGAATGAGAGGG-AAAAATAATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTC
261 AATTTTAGAATGAGAGGGAAAAAAT-ATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTC
*
1668090 TATTCCTTATGTTTTATCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAA
325 TATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAA
1668155 AGTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTC
390 AGTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTC
1668220 CTTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAA
455 CTTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAA
1668285 GTTATTTTGGATTCTCGATAT
520 GTTATTTTGGATTCTCGATAT
1668306 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1668371 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
* *
1668436 AGAGAGTGAGAAAAATTTGGGATTATCCACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1668501 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1668566 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
*
1668631 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATACGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1668696 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1668761 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1668826 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
*
1668846 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTTCATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1668911 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
* *
1668976 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACTGTTTTTAATGTAGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
* *
1669041 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAAAATTAGAGCGAAAGAGTGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
*
1669106 AATTTTAGAATGAGAGGAAAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTC
261 AATTTTAGAATGAGAGG-GAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTC
1669171 TATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAA
325 TATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAA
1669236 AGTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTC
390 AGTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTC
*
1669301 CTTGTAGTTGATTTAATTTGTTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAA
455 CTTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAA
1669366 GTTATTTTGGATTCTCGATAT
520 GTTATTTTGGATTCTCGATAT
*
1669387 TGATTACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
* * *
1669452 AGTTCAATTATATGATTCCCTAACTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
*
1669517 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCATTTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
*
1669582 AATTAACATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
*
1669647 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGGTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1669712 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1669777 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1669842 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATA-TTTCGTATCAA-TTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1669905 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1669925 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
*
1669990 AGTTCAATTATTTGATTCCCTAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
1670055 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
1670120 AA-TAGCATATGACGGTGCTTTGAGAGTTTT-AAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
*
1670183 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGTGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1670248 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1670313 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1670378 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1670443 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1670463 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1670528 AGTTCAA-TATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
1670592 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGT-GGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
* *
1670656 AATTAGCATATAACGGTTCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
1670721 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1670786 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATAT-AGATGGTGGTAGGTGACTTAAA
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
1670850 GTTGTCATTCAGTCGAGAGA-TTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
391 GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
1670914 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
456 TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
1670979 TTATTTTGGATTCTCGATAT
521 TTATTTTGGATTCTCGATAT
1670999 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
1 TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
*
1671064 AGTTCAATTATTTGATTTCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
66 AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
1671129 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGT-GGGGAGAAC
131 AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
*
1671193 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCAAAAGAGAGTGCGAGAG
196 AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
*
1671258 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTCTTGTCTCT
261 AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
1671323 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGG
326 ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGG
1671379 CATGGGCGGA
Statistics
Matches: 25729, Mismatches: 276, Indels: 298
0.98 0.01 0.01
Matches are distributed among these distances:
529 25 0.00
530 295 0.01
531 96 0.00
532 323 0.01
533 1327 0.05
534 1991 0.08
535 3120 0.12
536 3653 0.14
537 4019 0.16
538 2807 0.11
539 2611 0.10
540 4673 0.18
541 789 0.03
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (540 bp):
TGATGACCCAAACTTTTTATATGACCCATCATTCCATATCCGGGATGTATTTACATTAGTTTGAA
AGTTCAATTATTTGATTCCATAATTTAAACTTTATTAATATATAATAAGTGAAATAGAGCGAAAG
AGAGTGTGAGAAAAATTTGGGATTATACACGGTGATGGTCAACCGTTTTTAATGTGGGGGAGAAC
AATTAGCATATGACGGTGCTTTGAGAGTTTTAAAAAGAGAATTAGAGCGAAAGAGAGTGCGAGAG
AATTTTAGAATGAGAGGGAAAAAATATGATCTTTTGAACGTGAGTCCATATTTATTGTTGTCTCT
ATTCCTTATGTTTTGTCATATGATCGTTGTAGGTGTGGATATAAGATGGTGGTAGGTGACTTAAA
GTTGTCATTCAGTCGAGAGATTTATTTCTTTTCTTAATCTTTTGGCTTAAAGTTTACTTTTGTCC
TTGTAGTTGATTTAATTTATTATTTTCATCCCTATAATATTTTCGTATCAATTTAGTCTTTAAAG
TTATTTTGGATTCTCGATAT
Found at i:1673822 original size:15 final size:15
Alignment explanation
Indices: 1673789--1673830 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 15
1673779 TTTTAATTAT
1673789 AATAAATATCTACATA
1 AATAAATAT-TACATA
1673805 AATAAATATT-CATAA
1 AATAAATATTACAT-A
1673820 AATAAATATTA
1 AATAAATATTA
1673831 TTTTTATTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 3 0.12
15 12 0.50
16 9 0.38
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (15 bp):
AATAAATATTACATA
Found at i:1673929 original size:3 final size:3
Alignment explanation
Indices: 1673886--1673917 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
1673876 TTGTCAATGT
1673886 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1673918 TGAATTAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:1680893 original size:20 final size:20
Alignment explanation
Indices: 1680868--1680905 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
1680858 ATTTAGTGCA
*
1680868 GAGGGAATCGATACCCCCAT
1 GAGGGAACCGATACCCCCAT
*
1680888 GAGGGAACCGATTCCCCC
1 GAGGGAACCGATACCCCC
1680906 TGGGGTACTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.34, G:0.26, T:0.13
Consensus pattern (20 bp):
GAGGGAACCGATACCCCCAT
Found at i:1684654 original size:20 final size:21
Alignment explanation
Indices: 1684618--1684662 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 21
1684608 ATGTTTATAT
1684618 TATT-TATTTGATATATTAAA
1 TATTATATTTGATATATTAAA
1684638 -ATTATATTT-ATATTATTAAA
1 TATTATATTTGATA-TATTAAA
1684658 TATTA
1 TATTA
1684663 ATTATAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
19 6 0.27
20 12 0.55
21 4 0.18
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (21 bp):
TATTATATTTGATATATTAAA
Found at i:1688466 original size:18 final size:18
Alignment explanation
Indices: 1688443--1688491 Score: 98
Period size: 18 Copynumber: 2.7 Consensus size: 18
1688433 TCATACCTCA
1688443 AATATAAAATCGACATCT
1 AATATAAAATCGACATCT
1688461 AATATAAAATCGACATCT
1 AATATAAAATCGACATCT
1688479 AATATAAAATCGA
1 AATATAAAATCGA
1688492 TCTGGGTTGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.53, C:0.14, G:0.06, T:0.27
Consensus pattern (18 bp):
AATATAAAATCGACATCT
Found at i:1692233 original size:35 final size:35
Alignment explanation
Indices: 1692182--1692257 Score: 116
Period size: 35 Copynumber: 2.2 Consensus size: 35
1692172 AAAACAGTCC
* * *
1692182 TCAATTTCATTCTAAACCCCAATTTCCAAAGTAAT
1 TCAATTTCATTATAAACCCCAAATTCCAAAATAAT
*
1692217 TCAATTTCATTATAAACCCTAAATTCCAAAATAAT
1 TCAATTTCATTATAAACCCCAAATTCCAAAATAAT
1692252 TCAATT
1 TCAATT
1692258 AAATTCAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.41, C:0.22, G:0.01, T:0.36
Consensus pattern (35 bp):
TCAATTTCATTATAAACCCCAAATTCCAAAATAAT
Found at i:1692784 original size:127 final size:125
Alignment explanation
Indices: 1692640--1692881 Score: 387
Period size: 126 Copynumber: 1.9 Consensus size: 125
1692630 ATTATTTATA
**
1692640 ATCAATTTGGTCCTAAATTAAATAGAATTTAATAAATTAATCATTTAATTAGGATCTGACATGTG
1 ATCAATTTGGTCCTAAATTAAATA-AATTTAATAAATTAATCATTTAACCAGGATCTGACATGTG
* *
1692705 TTAGCACATGGTCATGACACGTGTCATTGGTGACACATGTCACCA-CTAATTATTTATATGCT
65 TTA--ACATGATCATGACACATGTCATTGGTGACACATGTCACCACCTAATTATTTATATGCT
1692767 ATCAATTTGGTCCTAAATTAAATAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTGT
1 ATCAATTTGGTCCTAAATTAAATAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTGT
* * *
1692832 TAACATGATCATGATATATGTTATTGGTGACACATGTCACCACCTAATTA
66 TAACATGATCATGACACATGTCATTGGTGACACATGTCACCACCTAATTA
1692882 GAAGAAATTA
Statistics
Matches: 107, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
124 35 0.33
125 7 0.07
126 41 0.38
127 24 0.22
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.36
Consensus pattern (125 bp):
ATCAATTTGGTCCTAAATTAAATAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTGT
TAACATGATCATGACACATGTCATTGGTGACACATGTCACCACCTAATTATTTATATGCT
Found at i:1693354 original size:16 final size:18
Alignment explanation
Indices: 1693333--1693366 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
1693323 ATTTCTTATT
1693333 AAAAATA-AAAT-ATTCA
1 AAAAATATAAATGATTCA
1693349 AAAAATATAAATGATTCA
1 AAAAATATAAATGATTCA
1693367 TACATTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (18 bp):
AAAAATATAAATGATTCA
Found at i:1696305 original size:48 final size:48
Alignment explanation
Indices: 1696211--1696375 Score: 219
Period size: 48 Copynumber: 3.4 Consensus size: 48
1696201 CGGTTCTCTG
1696211 TCATTTTCATCATCATCATAGTCATGACCATCGTTTTTG-T-T-ATCTTGATCA
1 TCATTTTCATCATCATC--A--CA-G-CCATCGTTTTTGTTGTCATCTTGATCA
*
1696262 TCATTTTCATCATCATCACAGCCATCGTTTTTGTTGTCTTCTTGATCA
1 TCATTTTCATCATCATCACAGCCATCGTTTTTGTTGTCATCTTGATCA
** *
1696310 TCATTTTCATCATCATCACAAACATTGTTTTTGTTGTCATCTTGATCA
1 TCATTTTCATCATCATCACAGCCATCGTTTTTGTTGTCATCTTGATCA
1696358 TCATTTTCATCATCATCA
1 TCATTTTCATCATCATCA
1696376 TGGTCACTAA
Statistics
Matches: 106, Mismatches: 5, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
45 12 0.11
46 2 0.02
47 3 0.03
48 71 0.67
49 1 0.01
51 17 0.16
ACGTcount: A:0.23, C:0.23, G:0.08, T:0.45
Consensus pattern (48 bp):
TCATTTTCATCATCATCACAGCCATCGTTTTTGTTGTCATCTTGATCA
Found at i:1718113 original size:31 final size:31
Alignment explanation
Indices: 1718033--1718121 Score: 83
Period size: 31 Copynumber: 2.9 Consensus size: 31
1718023 ATTTTAAAAG
* * **
1718033 TTAT-AAATGATCCTTAAACTTTATCAAATTA
1 TTATAAAATAATCTTTAAA-TTTATTGAATTA
* *
1718064 TTACAAAATTAT-TATTAAATTTATTGAATTA
1 TTATAAAATAATCT-TTAAATTTATTGAATTA
*
1718095 TTATAAAATAATCTTTAAACTTATTGA
1 TTATAAAATAATCTTTAAATTTATTGA
1718122 GAATTTATCA
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
31 35 0.74
32 12 0.26
ACGTcount: A:0.44, C:0.08, G:0.03, T:0.45
Consensus pattern (31 bp):
TTATAAAATAATCTTTAAATTTATTGAATTA
Found at i:1718274 original size:60 final size:60
Alignment explanation
Indices: 1718195--1718315 Score: 161
Period size: 60 Copynumber: 2.0 Consensus size: 60
1718185 CCCCCGATTT
* * * * *
1718195 TAGGACATTGTTTTATTGAGTCTCTCGACAATTAAAAGTTATAAAATGATCCATTGACTA
1 TAGGACATTGCTTTATTGAGCCCCTCGACAATTAAAAGTTACAAAATGATCCATCGACTA
* * * *
1718255 TAGGGCATTGCTTTGTTGAGCCCCTCGACTATTAAAAGTTACAAAATGATCCCTCGACTA
1 TAGGACATTGCTTTATTGAGCCCCTCGACAATTAAAAGTTACAAAATGATCCATCGACTA
1718315 T
1 T
1718316 TCATATGTTC
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
60 52 1.00
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (60 bp):
TAGGACATTGCTTTATTGAGCCCCTCGACAATTAAAAGTTACAAAATGATCCATCGACTA
Found at i:1718582 original size:60 final size:60
Alignment explanation
Indices: 1718516--1718649 Score: 216
Period size: 60 Copynumber: 2.2 Consensus size: 60
1718506 GTCAGGTGAT
* * *
1718516 CATTTTGTAACTTTTAATAGTCGGGAGACTCAACAAAATAATGCTCTATAGTCGGGGGAC
1 CATTTTGTAACTTTTAACAGCCGGGAGACTCAACAAAATAATGCTCTATAGTCGGGAGAC
*
1718576 CATTTTGTAACTTTTAACAGCCGGGAGACTCAAGAAAATAATGCTCTATAGTCGGGAGAC
1 CATTTTGTAACTTTTAACAGCCGGGAGACTCAACAAAATAATGCTCTATAGTCGGGAGAC
1718636 CATTTGTGT-ACTTT
1 CATTT-TGTAACTTT
1718650 ACCCTTTTAT
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
60 66 0.96
61 3 0.04
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (60 bp):
CATTTTGTAACTTTTAACAGCCGGGAGACTCAACAAAATAATGCTCTATAGTCGGGAGAC
Found at i:1719673 original size:43 final size:43
Alignment explanation
Indices: 1719625--1719709 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
1719615 TAAGAATTGA
*
1719625 TGTAATATGTTAGTTTGGTGTATTTGTGGATTGTTACTTTGGT
1 TGTAATATGTTAGTTTAGTGTATTTGTGGATTGTTACTTTGGT
*
1719668 TGTAATATGTTAGTTTAGTGTATTTGTGGATTGTTATTTTGG
1 TGTAATATGTTAGTTTAGTGTATTTGTGGATTGTTACTTTGG
1719710 AGTTTGAACT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.18, C:0.01, G:0.27, T:0.54
Consensus pattern (43 bp):
TGTAATATGTTAGTTTAGTGTATTTGTGGATTGTTACTTTGGT
Found at i:1719694 original size:24 final size:23
Alignment explanation
Indices: 1719625--1719694 Score: 60
Period size: 24 Copynumber: 3.1 Consensus size: 23
1719615 TAAGAATTGA
1719625 TGTAATATGTTAGTTTGGTGTATT
1 TGTAATATGTTAGTTT-GTGTATT
* *
1719649 TGTGGAT-TGTTACTTTG-G---T
1 TGT-AATATGTTAGTTTGTGTATT
1719668 TGTAATATGTTAGTTTAGTGTATT
1 TGTAATATGTTAGTTT-GTGTATT
1719692 TGT
1 TGT
1719695 GGATTGTTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 14
0.66 0.08 0.26
Matches are distributed among these distances:
18 2 0.06
19 12 0.34
20 1 0.03
21 1 0.03
22 1 0.03
23 1 0.03
24 15 0.43
25 2 0.06
ACGTcount: A:0.19, C:0.01, G:0.26, T:0.54
Consensus pattern (23 bp):
TGTAATATGTTAGTTTGTGTATT
Found at i:1719769 original size:23 final size:25
Alignment explanation
Indices: 1719742--1719787 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
1719732 ACACACCATT
* *
1719742 TTAAT-TAT-TTTTTATTAAATTTC
1 TTAATGTATGTTTATATCAAATTTC
1719765 TTAATGTATGTTTATATCAAATT
1 TTAATGTATGTTTATATCAAATT
1719788 CTATATAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 5 0.26
24 3 0.16
25 11 0.58
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (25 bp):
TTAATGTATGTTTATATCAAATTTC
Found at i:1726881 original size:6 final size:6
Alignment explanation
Indices: 1726870--1726895 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
1726860 AAGTGTAAAT
1726870 AAAAGC AAAAGC AAAAGC AAAAGC AA
1 AAAAGC AAAAGC AAAAGC AAAAGC AA
1726896 GGCGTGTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.69, C:0.15, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAGC
Found at i:1727982 original size:60 final size:59
Alignment explanation
Indices: 1727878--1728006 Score: 179
Period size: 60 Copynumber: 2.2 Consensus size: 59
1727868 TATATCATAT
* * *
1727878 ATCCCCAAACTATGACCTCACTTTAAATTAGTCCTTAAACTTTTGAATATTCTAATTTC
1 ATCCCCAAACAATGACCTCACTTTAAACTAGTCCTTAAAATTTTGAATATTCTAATTTC
* *
1727937 ATCCCCATACAATGACTCTCA-TTCTAAACTAGTCCTTAAAATTTTGAATGTTCTAATTTC
1 ATCCCCAAACAATGAC-CTCACTT-TAAACTAGTCCTTAAAATTTTGAATATTCTAATTTC
*
1727997 ATCCCTAAAC
1 ATCCCCAAAC
1728007 TAGACCATCT
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
59 16 0.26
60 45 0.74
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (59 bp):
ATCCCCAAACAATGACCTCACTTTAAACTAGTCCTTAAAATTTTGAATATTCTAATTTC
Found at i:1728295 original size:60 final size:60
Alignment explanation
Indices: 1728195--1728337 Score: 146
Period size: 60 Copynumber: 2.4 Consensus size: 60
1728185 TATATTTTGT
* * * ** * *
1728195 GATGAAATTGGAATGTTAAAAAATTTTGGGGACCAATTTAGAATGA-AGGTCATTGTTTGGG
1 GATGAAATTGAAATATT-TAAAATTTTGAAGACCAATTTAGAATGATA-GTCATAGTTTAGG
* *
1728256 GATGAAATTGAAAT-TTTCAAAATTTTGAAGACTATTTTAGAATGATAGTCATAGTTTAGG
1 GATGAAATTGAAATATTT-AAAATTTTGAAGACCAATTTAGAATGATAGTCATAGTTTAGG
* *
1728316 GATGGAATTAAAATATTTAAAA
1 GATGAAATTGAAATATTTAAAA
1728338 GGCTAGGGAC
Statistics
Matches: 69, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
60 52 0.75
61 17 0.25
ACGTcount: A:0.39, C:0.04, G:0.22, T:0.35
Consensus pattern (60 bp):
GATGAAATTGAAATATTTAAAATTTTGAAGACCAATTTAGAATGATAGTCATAGTTTAGG
Found at i:1732303 original size:36 final size:36
Alignment explanation
Indices: 1732253--1732337 Score: 152
Period size: 36 Copynumber: 2.4 Consensus size: 36
1732243 AGCTGCTCAT
* *
1732253 GCCTCGATATTTGCAATCATGATTAACCGCAACGCA
1 GCCTCGGTACTTGCAATCATGATTAACCGCAACGCA
1732289 GCCTCGGTACTTGCAATCATGATTAACCGCAACGCA
1 GCCTCGGTACTTGCAATCATGATTAACCGCAACGCA
1732325 GCCTCGGTACTTG
1 GCCTCGGTACTTG
1732338 AACAGAATCA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 47 1.00
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (36 bp):
GCCTCGGTACTTGCAATCATGATTAACCGCAACGCA
Found at i:1735980 original size:29 final size:29
Alignment explanation
Indices: 1735938--1735996 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
1735928 ATTTTCACCT
1735938 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
1735967 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
1735996 A
1 A
1735997 TTAATTTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (29 bp):
AACTAAATTGATGTAAGCAATGACATCAA
Found at i:1740661 original size:29 final size:29
Alignment explanation
Indices: 1740619--1740677 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
1740609 ATTTTCACCT
1740619 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
1740648 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
1740677 A
1 A
1740678 TTAATTTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (29 bp):
AACTAAATTGATGTAAGCAATGACATCAA
Found at i:1745345 original size:29 final size:29
Alignment explanation
Indices: 1745303--1745361 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
1745293 ATTTTCACCT
1745303 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
1745332 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
1745361 A
1 A
1745362 TTAATTTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (29 bp):
AACTAAATTGATGTAAGCAATGACATCAA
Found at i:1756187 original size:20 final size:20
Alignment explanation
Indices: 1756148--1756202 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
1756138 AGTTATGATC
* * *
1756148 ATAATTGAAAATATATATTT
1 ATAATTTAATATAAATATTT
1756168 A-AATTTAATTATAAATATTT
1 ATAATTTAA-TATAAATATTT
*
1756188 ATATTTTAATATAAA
1 ATAATTTAATATAAA
1756203 ATAAATTATT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 6 0.21
20 17 0.59
21 6 0.21
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (20 bp):
ATAATTTAATATAAATATTT
Found at i:1770160 original size:62 final size:62
Alignment explanation
Indices: 1770059--1770176 Score: 164
Period size: 62 Copynumber: 1.9 Consensus size: 62
1770049 TTTTTTTACA
* * *
1770059 CATCAAAATATGAATTTCTAAAGCTCCATTTCACACTTGCTTTTATTCTTGTTTCTACCACG
1 CATCAAAATATGAACTTCTAAAGCTACATTTCACACTTGCTTTTATTCTAGTTTCTACCACG
* * ** *
1770121 CATCAAAGTGTGAACTTCTAAAGCTACATTTGGCTCTTGCTTTTATTCTAGTTTCT
1 CATCAAAATATGAACTTCTAAAGCTACATTTCACACTTGCTTTTATTCTAGTTTCT
1770177 GTCTCTTAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
62 48 1.00
ACGTcount: A:0.25, C:0.22, G:0.11, T:0.42
Consensus pattern (62 bp):
CATCAAAATATGAACTTCTAAAGCTACATTTCACACTTGCTTTTATTCTAGTTTCTACCACG
Found at i:1772039 original size:27 final size:27
Alignment explanation
Indices: 1771999--1772057 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
1771989 ATTATTTTCT
*
1771999 TTATTATATAATGTAATTATTTAATTA
1 TTATTATATAATGTAATTATCTAATTA
*
1772026 TTATTATATGATGTAATTATCTAATTA
1 TTATTATATAATGTAATTATCTAATTA
*
1772053 CTATT
1 TTATT
1772058 TTGGTTCTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.37, C:0.03, G:0.05, T:0.54
Consensus pattern (27 bp):
TTATTATATAATGTAATTATCTAATTA
Found at i:1772297 original size:26 final size:27
Alignment explanation
Indices: 1772237--1772299 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 27
1772227 TTTAACGATG
*
1772237 AAATAATATATTTTTAATAATATTTTAA
1 AAATAATA-ATGTTTAATAATATTTTAA
** *
1772265 TTA-AATAATGTTTATTAAT-TTTTAA
1 AAATAATAATGTTTAATAATATTTTAA
1772290 AAATAATAAT
1 AAATAATAAT
1772300 AACTTAATTA
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
25 7 0.25
26 16 0.57
27 4 0.14
28 1 0.04
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (27 bp):
AAATAATAATGTTTAATAATATTTTAA
Found at i:1789367 original size:21 final size:22
Alignment explanation
Indices: 1789343--1789393 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
1789333 TTATTTTTTT
*
1789343 AATTTAATTA-TTTAACTTTCA
1 AATTTAATTACTCTAACTTTCA
* *
1789364 AA-TTACTCACTCTAACTTTCA
1 AATTTAATTACTCTAACTTTCA
1789385 AATTTAATT
1 AATTTAATT
1789394 TCTTATTTTA
Statistics
Matches: 23, Mismatches: 5, Indels: 3
0.74 0.16 0.10
Matches are distributed among these distances:
20 5 0.22
21 14 0.61
22 4 0.17
ACGTcount: A:0.37, C:0.16, G:0.00, T:0.47
Consensus pattern (22 bp):
AATTTAATTACTCTAACTTTCA
Found at i:1789854 original size:2 final size:2
Alignment explanation
Indices: 1789847--1789875 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
1789837 TTCTTTCCAT
1789847 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1789876 GCGAATCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1793132 original size:135 final size:135
Alignment explanation
Indices: 1792957--1793216 Score: 396
Period size: 135 Copynumber: 1.9 Consensus size: 135
1792947 GATCAACATG
* *
1792957 TGTTTGATACAGAAGATGCTCAAGAAGGCAAGAGATGGTCCTCACAACCACAATCATCAGCTGCT
1 TGTTTGATACAGAAGATGCTCAAGAAGGCAAGAGATGGTCCTCACAACCACAACCATCACCTGCT
*
1793022 CATTTTTCAGAATCAAAGCCTTTGTATAGAACTTCATCATATCCCCAGCAGCAACCAGAGTCTCT
66 CATTTTTCAGAATCAAAGCCTTTGTATAGAACTTCATCATATCCCAAGCAGCAACCAGAGTCTCT
1793087 CTTCA
131 CTTCA
* * * *
1793092 TGTTTGATACAGAAGACT-CTCAAGAAGGCAAGAGATGGTCCTCTCAGCCGCAACCATCTCCTGC
1 TGTTTGATACAGAAGA-TGCTCAAGAAGGCAAGAGATGGTCCTCACAACCACAACCATCACCTGC
* * ** *
1793156 TCGTTTTTCAGAATCAAAGCTTTTGTATAGAACTTTGTCATATCCCAATCAGCAACCAGAG
65 TCATTTTTCAGAATCAAAGCCTTTGTATAGAACTTCATCATATCCCAAGCAGCAACCAGAG
1793217 CTTCACTTCT
Statistics
Matches: 112, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
135 111 0.99
136 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (135 bp):
TGTTTGATACAGAAGATGCTCAAGAAGGCAAGAGATGGTCCTCACAACCACAACCATCACCTGCT
CATTTTTCAGAATCAAAGCCTTTGTATAGAACTTCATCATATCCCAAGCAGCAACCAGAGTCTCT
CTTCA
Found at i:1803227 original size:15 final size:16
Alignment explanation
Indices: 1803192--1803230 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
1803182 ATTAAATTGA
1803192 AATATTATCTAAAAAT
1 AATATTATCTAAAAAT
* *
1803208 AATATTAT-TTAAAGT
1 AATATTATCTAAAAAT
1803223 AATATTAT
1 AATATTAT
1803231 AATATTTAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (16 bp):
AATATTATCTAAAAAT
Found at i:1803293 original size:60 final size:60
Alignment explanation
Indices: 1803176--1803293 Score: 175
Period size: 60 Copynumber: 2.0 Consensus size: 60
1803166 TATTTTACAC
** * **
1803176 TTAGAAATTAAATTGAAATATTATCTAAAAATAATATTATTTAAAGTAATATTATAATAT
1 TTAGAAATTAAATTGAAATATTATCTAAAAATAATATTATAAAAAATAATAAAATAATAT
1803236 TTAGAAATTAAATTGAAATAGTTATCTAAAAATAATATT-TAAAAAATAATAAAATAAT
1 TTAGAAATTAAATTGAAATA-TTATCTAAAAATAATATTATAAAAAATAATAAAATAAT
1803294 TTTTTAAAAG
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
60 34 0.65
61 18 0.35
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.38
Consensus pattern (60 bp):
TTAGAAATTAAATTGAAATATTATCTAAAAATAATATTATAAAAAATAATAAAATAATAT
Found at i:1803309 original size:20 final size:20
Alignment explanation
Indices: 1803262--1803311 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
1803252 AATAGTTATC
1803262 TAAAAATAATATTTAAAAAA
1 TAAAAATAATATTTAAAAAA
* * *
1803282 TAATAAAATAATTTTTTAAAAG
1 T-A-AAAATAATATTTAAAAAA
1803304 TAAAAATA
1 TAAAAATA
1803312 TTTATTTGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
20 7 0.28
21 2 0.08
22 16 0.64
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (20 bp):
TAAAAATAATATTTAAAAAA
Found at i:1805487 original size:23 final size:23
Alignment explanation
Indices: 1805461--1805505 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
1805451 CACCACAGCT
*
1805461 CGTATAATTGCACCGAAGTGCCG
1 CGTAGAATTGCACCGAAGTGCCG
*
1805484 CGTAGAATTGCACCGTAGTGCC
1 CGTAGAATTGCACCGAAGTGCC
1805506 ATATAATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (23 bp):
CGTAGAATTGCACCGAAGTGCCG
Found at i:1805762 original size:149 final size:145
Alignment explanation
Indices: 1805473--1805783 Score: 502
Period size: 149 Copynumber: 2.1 Consensus size: 145
1805463 TATAATTGCA
1805473 CCGAAGTG-CCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAA
1 CCGAAG-GACCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAA
**
1805537 TTCCTTAAGAATCATATACATATGCTAGGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTT
65 TTCCTTAAGAATCATATACATATGCTAGGGATCAAG-ATGTGTCTCACAAGACTTCACACATGTT
1805602 CCACATAATATATATATATC
129 CCA-A-AA-ATATATATATC
*
1805622 CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAAT
1 CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAAT
*
1805687 TCCTTAAGAATCATATACATATGCTAGGGATCATA-ATGTGTCTCACCAGAC-TCACACATGTTC
66 TCCTTAAGAATCATATACATATGCTAGGGATCA-AGATGTGTCTCACAAGACTTCACACATGTTC
1805750 CAAAGAATATATATATC
130 CAAA-AATATATATATC
1805767 CCGAAGGACCGCGTAGA
1 CCGAAGGACCGCGTAGA
1805784 CCCTCGACTC
Statistics
Matches: 155, Mismatches: 4, Indels: 10
0.92 0.02 0.06
Matches are distributed among these distances:
145 29 0.19
146 2 0.01
147 14 0.09
148 14 0.09
149 95 0.61
150 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (145 bp):
CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAAT
TCCTTAAGAATCATATACATATGCTAGGGATCAAGATGTGTCTCACAAGACTTCACACATGTTCC
AAAAATATATATATC
Found at i:1806704 original size:18 final size:18
Alignment explanation
Indices: 1806683--1806717 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
1806673 TCCCATCTAG
1806683 CTTATC-TTATATGTTCAT
1 CTTATCATT-TATGTTCAT
1806701 CTTATCATTTATGTTCA
1 CTTATCATTTATGTTCA
1806718 AATCTCCTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.23, C:0.17, G:0.06, T:0.54
Consensus pattern (18 bp):
CTTATCATTTATGTTCAT
Found at i:1807325 original size:21 final size:20
Alignment explanation
Indices: 1807295--1807338 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
1807285 TGTTGTTCGT
* *
1807295 TTGAAGGGTATCGGTTCCCC
1 TTGAAGGGTACCGATTCCCC
1807315 TTGAATGGGTACCGATTCCCC
1 TTGAA-GGGTACCGATTCCCC
1807336 TTG
1 TTG
1807339 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.16, C:0.25, G:0.27, T:0.32
Consensus pattern (20 bp):
TTGAAGGGTACCGATTCCCC
Found at i:1810613 original size:23 final size:23
Alignment explanation
Indices: 1810587--1810631 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
1810577 CACCACAGCT
*
1810587 CGTATAATTGCACCGAAGTGCCG
1 CGTAGAATTGCACCGAAGTGCCG
*
1810610 CGTAGAATTGCACCGTAGTGCC
1 CGTAGAATTGCACCGAAGTGCC
1810632 ATATAATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (23 bp):
CGTAGAATTGCACCGAAGTGCCG
Found at i:1810852 original size:149 final size:151
Alignment explanation
Indices: 1810599--1810915 Score: 525
Period size: 149 Copynumber: 2.1 Consensus size: 151
1810589 TATAATTGCA
*
1810599 CCGAAGTG-CCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACTACATAGAA
1 CCGAAG-GACCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAA
**
1810663 TTCCTTAAGAATCATATACATATGCTAGGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTT
65 TTCCTTAAGAATCATATACATATGCTAGGGATCAAGTATGTGTCTCACAAGACTTCACACATGTT
*
1810728 CCACAG-A-ATATATATATATC
130 CCAAAGAATATATATATATATC
*
1810748 CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAAT
1 CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAAT
*
1810813 TCCTTAAGAATCATATACATATGCTAGGGATCATA-TATGTGTCTCACCAGACTTCACACATGTT
66 TCCTTAAGAATCATATACATATGCTAGGGATCA-AGTATGTGTCTCACAAGACTTCACACATGTT
1810877 CCAAAGAATATATATATATATC
130 CCAAAGAATATATATATATATC
*
1810899 CCGAAGGACTGCGTAGA
1 CCGAAGGACCGCGTAGA
1810916 CCCTCGACTC
Statistics
Matches: 157, Mismatches: 7, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
148 1 0.01
149 125 0.80
150 2 0.01
151 29 0.18
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (151 bp):
CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAAT
TCCTTAAGAATCATATACATATGCTAGGGATCAAGTATGTGTCTCACAAGACTTCACACATGTTC
CAAAGAATATATATATATATC
Found at i:1811842 original size:18 final size:18
Alignment explanation
Indices: 1811821--1811855 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
1811811 TCCCATCTAG
1811821 CTTATC-TTATATGTTCAT
1 CTTATCATT-TATGTTCAT
1811839 CTTATCATTTATGTTCA
1 CTTATCATTTATGTTCA
1811856 AATCTCCTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.23, C:0.17, G:0.06, T:0.54
Consensus pattern (18 bp):
CTTATCATTTATGTTCAT
Found at i:1812467 original size:21 final size:20
Alignment explanation
Indices: 1812437--1812480 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
1812427 TGTTGTTCGT
* *
1812437 TTGAAGGGTATCGGTTCCCC
1 TTGAAGGGTACCGATTCCCC
1812457 TTGAATGGGTACCGATTCCCC
1 TTGAA-GGGTACCGATTCCCC
1812478 TTG
1 TTG
1812481 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.16, C:0.25, G:0.27, T:0.32
Consensus pattern (20 bp):
TTGAAGGGTACCGATTCCCC
Found at i:1818403 original size:14 final size:14
Alignment explanation
Indices: 1818364--1818407 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
1818354 CAATGAATCC
**
1818364 TAAACCCTAAACCA
1 TAAACCCTAAATTA
*
1818378 TAAATCCTAAATTA
1 TAAACCCTAAATTA
1818392 TAAACCCTAAATTA
1 TAAACCCTAAATTA
1818406 TA
1 TA
1818408 CTTACCTCAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.27
Consensus pattern (14 bp):
TAAACCCTAAATTA
Found at i:1818500 original size:7 final size:7
Alignment explanation
Indices: 1818490--1818519 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
1818480 CTATAATCCT
1818490 AAACCTA
1 AAACCTA
1818497 AAACCTA
1 AAACCTA
1818504 AAACCTA
1 AAACCTA
1818511 AAACCTA
1 AAACCTA
1818518 AA
1 AA
1818520 TCTGATTATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.60, C:0.27, G:0.00, T:0.13
Consensus pattern (7 bp):
AAACCTA
Found at i:1820811 original size:21 final size:20
Alignment explanation
Indices: 1820784--1820866 Score: 94
Period size: 21 Copynumber: 4.0 Consensus size: 20
1820774 ATCAGATTGT
*
1820784 CCAGGGGGTATAGATTCCTCC
1 CCAGGGGGTACAGATTCC-CC
* *
1820805 CTAGGGGGTACCGATTCCCC
1 CCAGGGGGTACAGATTCCCC
* *
1820825 CCAAGGGGAACAGATTCCCCC
1 CCAGGGGGTACAGATT-CCCC
*
1820846 CCAGGGGGTACCGATTCCCC
1 CCAGGGGGTACAGATTCCCC
1820866 C
1 C
1820867 TGTCTAACAG
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
20 19 0.37
21 32 0.63
ACGTcount: A:0.19, C:0.36, G:0.28, T:0.17
Consensus pattern (20 bp):
CCAGGGGGTACAGATTCCCC
Found at i:1822168 original size:19 final size:20
Alignment explanation
Indices: 1822144--1822191 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
1822134 AACGATTTTC
*
1822144 TTTTGAAAACAAAAAT-AGA
1 TTTTGAAAACAAAAATGAAA
* *
1822163 TTTTGAAAGCCAAAATGAAA
1 TTTTGAAAACAAAAATGAAA
1822183 TTTTGAAAA
1 TTTTGAAAA
1822192 AGGATTTAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.52, C:0.06, G:0.12, T:0.29
Consensus pattern (20 bp):
TTTTGAAAACAAAAATGAAA
Found at i:1824832 original size:11 final size:11
Alignment explanation
Indices: 1824807--1824879 Score: 58
Period size: 11 Copynumber: 6.5 Consensus size: 11
1824797 ACCCGTCTTT
1824807 GAGCTTTAAAT-
1 GAGC-TTAAATC
*
1824818 GAGCTTGAATC
1 GAGCTTAAATC
*
1824829 GAGCTCAAAGTC
1 GAGCTTAAA-TC
*
1824841 GAGCTTGAATC
1 GAGCTTAAATC
* *
1824852 GAGCTCAAAATT
1 GAGCT-TAAATC
*
1824864 GAGCTTCAATC
1 GAGCTTAAATC
1824875 GAGCT
1 GAGCT
1824880 CGAGTTTCGA
Statistics
Matches: 48, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
10 5 0.10
11 26 0.54
12 17 0.35
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (11 bp):
GAGCTTAAATC
Found at i:1824845 original size:23 final size:23
Alignment explanation
Indices: 1824814--1824880 Score: 100
Period size: 23 Copynumber: 3.0 Consensus size: 23
1824804 TTTGAGCTTT
1824814 AAAT-GAGCTTGAATCGAGCTCA
1 AAATCGAGCTTGAATCGAGCTCA
*
1824836 AAGTCGAGCTTGAATCGAGCTCA
1 AAATCGAGCTTGAATCGAGCTCA
* *
1824859 AAATTGAGCTTCAATCGAGCTC
1 AAATCGAGCTTGAATCGAGCTC
1824881 GAGTTTCGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
22 3 0.08
23 37 0.93
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (23 bp):
AAATCGAGCTTGAATCGAGCTCA
Found at i:1826592 original size:15 final size:16
Alignment explanation
Indices: 1826567--1826597 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
1826557 AGAGTTCAAG
1826567 CTTCTAGATATGGTTT
1 CTTCTAGATATGGTTT
1826583 CTTC-AGATATGGTTT
1 CTTCTAGATATGGTTT
1826598 GCTCATATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.19, C:0.13, G:0.19, T:0.48
Consensus pattern (16 bp):
CTTCTAGATATGGTTT
Found at i:1827467 original size:42 final size:41
Alignment explanation
Indices: 1827396--1827482 Score: 106
Period size: 42 Copynumber: 2.1 Consensus size: 41
1827386 TTCCCCTTCC
* *
1827396 GTTTCTGGTTCTCGTTTATAGCTTGAATCGTTAATTTTTTCG
1 GTTTCTGGTTCTCGTTCATAGCTTGAATCGTAAATTTTTT-G
*
1827438 GTTTCTGGTTCTCGATTCA-GGCTAT-AATCGTAAATTTTTTG
1 GTTTCTGGTTCTCG-TTCATAGCT-TGAATCGTAAATTTTTTG
1827479 GTTT
1 GTTT
1827483 GTTTTATACG
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
41 5 0.12
42 31 0.77
43 4 0.10
ACGTcount: A:0.16, C:0.14, G:0.20, T:0.51
Consensus pattern (41 bp):
GTTTCTGGTTCTCGTTCATAGCTTGAATCGTAAATTTTTTG
Found at i:1828967 original size:14 final size:14
Alignment explanation
Indices: 1828948--1828986 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
1828938 TAATGGGGAG
1828948 TAATCCCTGCAAAA
1 TAATCCCTGCAAAA
*
1828962 TAATCCCTGCGAAA
1 TAATCCCTGCAAAA
* *
1828976 GAATCTCTGCA
1 TAATCCCTGCA
1828987 TATAGACAGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.36, C:0.28, G:0.13, T:0.23
Consensus pattern (14 bp):
TAATCCCTGCAAAA
Found at i:1829460 original size:24 final size:23
Alignment explanation
Indices: 1829402--1829460 Score: 55
Period size: 24 Copynumber: 2.5 Consensus size: 23
1829392 TGAAGAATAT
*
1829402 TATTATGATGATGACGAAAATGA
1 TATTATGATGATGACGAAAAGGA
* ** *
1829425 TGAATACAATGATGACGTAAACGGA
1 T-ATTATGATGATGACG-AAAAGGA
1829450 TATTATGATGA
1 TATTATGATGA
1829461 GAAAGATGAG
Statistics
Matches: 26, Mismatches: 8, Indels: 3
0.70 0.22 0.08
Matches are distributed among these distances:
23 1 0.04
24 19 0.73
25 6 0.23
ACGTcount: A:0.42, C:0.07, G:0.22, T:0.29
Consensus pattern (23 bp):
TATTATGATGATGACGAAAAGGA
Found at i:1836944 original size:19 final size:21
Alignment explanation
Indices: 1836898--1836945 Score: 55
Period size: 19 Copynumber: 2.4 Consensus size: 21
1836888 TTAAGTTATA
*
1836898 TATATATATATAATTTATATT
1 TATAAATATATAATTTATATT
**
1836919 TCGAAATAT-TAATTTA-ATT
1 TATAAATATATAATTTATATT
1836938 TATAAATA
1 TATAAATA
1836946 CATATAAATA
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
19 9 0.41
20 7 0.32
21 6 0.27
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (21 bp):
TATAAATATATAATTTATATT
Found at i:1841777 original size:2 final size:2
Alignment explanation
Indices: 1841770--1841809 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
1841760 GATGTTACAA
1841770 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1841810 GTTTCAGTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1849009 original size:21 final size:20
Alignment explanation
Indices: 1848966--1849033 Score: 91
Period size: 21 Copynumber: 3.3 Consensus size: 20
1848956 TTTTCCCAAT
** *
1848966 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATTTGAAAA
1848986 TCGCAATGCGAATTTGAAAAA
1 TCGCAATGCGAATTTG-AAAA
1849007 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTT-GAAAA
1849028 TCGCAA
1 TCGCAA
1849034 CGCGGTACTG
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
20 14 0.33
21 28 0.65
22 1 0.02
ACGTcount: A:0.41, C:0.16, G:0.21, T:0.22
Consensus pattern (20 bp):
TCGCAATGCGAATTTGAAAA
Found at i:1849095 original size:20 final size:20
Alignment explanation
Indices: 1849028--1849142 Score: 97
Period size: 20 Copynumber: 5.7 Consensus size: 20
1849018 ATTTGGAAAA
* *
1849028 TCGCAACGCGGTACTGACTA
1 TCGCAACGCGATACTGACTT
* **
1849048 TCGCAACGCGATAAT-ACAAAAA
1 TCGCAACGCGATACTGAC---TT
1849070 TCGCAACGCGATACTGACTT
1 TCGCAACGCGATACTGACTT
* * *
1849090 TCGCAACTCGATACTTAATT
1 TCGCAACGCGATACTGACTT
* *
1849110 TCGCAACTCAATACTGACTT
1 TCGCAACGCGATACTGACTT
*
1849130 TCGCAACGAGATA
1 TCGCAACGCGATA
1849143 ATACATAATC
Statistics
Matches: 76, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
19 2 0.03
20 57 0.75
22 15 0.20
23 2 0.03
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (20 bp):
TCGCAACGCGATACTGACTT
Found at i:1849356 original size:22 final size:22
Alignment explanation
Indices: 1849328--1849371 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
1849318 CACTCTCTCA
1849328 CCCATCTCCGACGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
*
1849350 CCCATCTCCGGCGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
1849372 TATCTCCATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.45, G:0.16, T:0.18
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:1849520 original size:20 final size:20
Alignment explanation
Indices: 1849495--1849542 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
1849485 TTATTCTCTC
1849495 GTTGCGATAGTCAAATTCGT
1 GTTGCGATAGTCAAATTCGT
** **
1849515 GTTGCGATTTTCATTTTCGT
1 GTTGCGATAGTCAAATTCGT
1849535 GTTGCGAT
1 GTTGCGAT
1849543 TTTCATTTTC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.17, C:0.15, G:0.25, T:0.44
Consensus pattern (20 bp):
GTTGCGATAGTCAAATTCGT
Found at i:1849543 original size:20 final size:20
Alignment explanation
Indices: 1849510--1849552 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
1849500 GATAGTCAAA
1849510 TTCGTGTTGCGATTTTCATT
1 TTCGTGTTGCGATTTTCATT
1849530 TTCGTGTTGCGATTTTCATT
1 TTCGTGTTGCGATTTTCATT
1849550 TTC
1 TTC
1849553 AGAAACTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.09, C:0.16, G:0.19, T:0.56
Consensus pattern (20 bp):
TTCGTGTTGCGATTTTCATT
Found at i:1849743 original size:25 final size:24
Alignment explanation
Indices: 1849689--1849743 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 24
1849679 TGTTTATTAT
*
1849689 TGTTTTTGGTATATCTTCACAGTG
1 TGTTTTTGGTATATCTTAACAGTG
1849713 TAGTTTTTGGTATATC-TAACTTAGTG
1 T-GTTTTTGGTATATCTTAAC--AGTG
1849739 TGTTT
1 TGTTT
1849744 ATTGTTTTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
24 4 0.15
25 18 0.67
26 5 0.19
ACGTcount: A:0.18, C:0.09, G:0.20, T:0.53
Consensus pattern (24 bp):
TGTTTTTGGTATATCTTAACAGTG
Found at i:1850885 original size:18 final size:18
Alignment explanation
Indices: 1850864--1850911 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
1850854 TCCACTTCGG
1850864 GAGCCATCACCTCACCCA
1 GAGCCATCACCTCACCCA
*
1850882 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
1850900 GAGCCATCACCT
1 GAGCCATCACCT
1850912 GATCGACCCG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.27, C:0.46, G:0.12, T:0.15
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:1851503 original size:19 final size:20
Alignment explanation
Indices: 1851460--1851515 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
1851450 CACAACACGA
1851460 AAATGACTATCGCAACGCGG
1 AAATGACTATCGCAACGCGG
* *
1851480 AAATGGCTATCGCAATGC-G
1 AAATGACTATCGCAACGCGG
**
1851499 AAATGAAAATCGCAACG
1 AAATGACTATCGCAACG
1851516 ACAAAATCGT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.39, C:0.21, G:0.23, T:0.16
Consensus pattern (20 bp):
AAATGACTATCGCAACGCGG
Found at i:1851540 original size:33 final size:33
Alignment explanation
Indices: 1851498--1851579 Score: 137
Period size: 33 Copynumber: 2.5 Consensus size: 33
1851488 ATCGCAATGC
* *
1851498 GAAATGAAAATCGCAACGACAAAATCGTAATAT
1 GAAATGAAAATCGCAACGACAAAATCGCAACAT
*
1851531 GAAATGAAAATTGCAACGACAAAATCGCAACAT
1 GAAATGAAAATCGCAACGACAAAATCGCAACAT
1851564 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
1851580 TGCGATTTGT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.52, C:0.16, G:0.16, T:0.16
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGACAAAATCGCAACAT
Found at i:1851617 original size:14 final size:14
Alignment explanation
Indices: 1851598--1851654 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
1851588 GTGTTTCGCT
1851598 TTGCGATTTTGTCG
1 TTGCGATTTTGTCG
*
1851612 TTGCGATTTTCATTTCG
1 TTGCGA-TTT--TGTCG
1851629 CATTGCGATTTTGTCG
1 --TTGCGATTTTGTCG
1851645 TTGCGATTTT
1 TTGCGATTTT
1851655 CATTTTGCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 16 0.44
15 3 0.08
16 4 0.11
17 4 0.11
18 3 0.08
19 6 0.17
ACGTcount: A:0.11, C:0.16, G:0.23, T:0.51
Consensus pattern (14 bp):
TTGCGATTTTGTCG
Found at i:1851628 original size:33 final size:33
Alignment explanation
Indices: 1851591--1851670 Score: 142
Period size: 33 Copynumber: 2.4 Consensus size: 33
1851581 GCGATTTGTG
*
1851591 TTTCGCTTTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
1851624 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
*
1851657 TTTTGCATTGCGAT
1 TTTCGCATTGCGAT
1851671 AGCCATTTCC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.11, C:0.17, G:0.21, T:0.50
Consensus pattern (33 bp):
TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
Found at i:1851636 original size:19 final size:19
Alignment explanation
Indices: 1851612--1851670 Score: 65
Period size: 19 Copynumber: 3.4 Consensus size: 19
1851602 GATTTTGTCG
1851612 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
1851631 TTGCGA-TTT--TGTCG--
1 TTGCGATTTTCATTTCGCA
*
1851645 TTGCGATTTTCATTTTGCA
1 TTGCGATTTTCATTTCGCA
1851664 TTGCGAT
1 TTGCGAT
1851671 AGCCATTTCC
Statistics
Matches: 32, Mismatches: 3, Indels: 10
0.71 0.07 0.22
Matches are distributed among these distances:
14 6 0.19
15 3 0.09
16 4 0.12
17 3 0.09
18 3 0.09
19 13 0.41
ACGTcount: A:0.14, C:0.17, G:0.20, T:0.49
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:1851689 original size:20 final size:20
Alignment explanation
Indices: 1851664--1851709 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
1851654 TCATTTTGCA
1851664 TTGCGATAGCCATTTCCGCG
1 TTGCGATAGCCATTTCCGCG
* * *
1851684 TTGCGATAGTCATTTTCGTG
1 TTGCGATAGCCATTTCCGCG
1851704 TTGCGA
1 TTGCGA
1851710 AAGTAAACTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.15, C:0.22, G:0.26, T:0.37
Consensus pattern (20 bp):
TTGCGATAGCCATTTCCGCG
Found at i:1852089 original size:21 final size:20
Alignment explanation
Indices: 1852063--1852130 Score: 66
Period size: 21 Copynumber: 3.4 Consensus size: 20
1852053 CTGTCATTCC
1852063 TCAAGAGTCCCCTCCAATCGT
1 TCAAGAGTCCCCTCC-ATCGT
* * **
1852084 TCAAGAGGCCCCTATCATCCC
1 TCAAGAGTCCCCT-CCATCGT
*
1852105 TCAAGAGTCCCC-CCACCGT
1 TCAAGAGTCCCCTCCATCGT
1852124 TCAAGAG
1 TCAAGAG
1852131 GCCACTGTCA
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
19 10 0.27
21 26 0.70
22 1 0.03
ACGTcount: A:0.25, C:0.40, G:0.16, T:0.19
Consensus pattern (20 bp):
TCAAGAGTCCCCTCCATCGT
Found at i:1852142 original size:40 final size:42
Alignment explanation
Indices: 1852053--1852142 Score: 130
Period size: 40 Copynumber: 2.2 Consensus size: 42
1852043 CCCGACTCAC
* * *
1852053 CTGTCATTCCTCAAGAGTCCCCTCCAATCGTTCAAGAGGCCC
1 CTGTCATCCCTCAAGAGTCCCCTCCAACCGTTCAAGAGGCCA
*
1852095 CTATCATCCCTCAAGAGTCCCC-CC-ACCGTTCAAGAGGCCA
1 CTGTCATCCCTCAAGAGTCCCCTCCAACCGTTCAAGAGGCCA
1852135 CTGTCATC
1 CTGTCATC
1852143 GTTGAAGAGG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
40 21 0.49
41 2 0.05
42 20 0.47
ACGTcount: A:0.22, C:0.40, G:0.16, T:0.22
Consensus pattern (42 bp):
CTGTCATCCCTCAAGAGTCCCCTCCAACCGTTCAAGAGGCCA
Found at i:1854025 original size:19 final size:19
Alignment explanation
Indices: 1854003--1854133 Score: 103
Period size: 19 Copynumber: 7.7 Consensus size: 19
1853993 GGAAATTACT
1854003 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
1854022 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
1854036 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
1854055 ATCGCAA--CG--A-GAAT
1 ATCGCAATGCGAAATGAAA
*
1854069 TTCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
**
1854088 ATCGCAA--CG--A-GGGA
1 ATCGCAATGCGAAATGAAA
1854102 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
1854121 ATCGCAACGCGAA
1 ATCGCAATGCGAA
1854134 TTTAGTTTCG
Statistics
Matches: 86, Mismatches: 11, Indels: 30
0.68 0.09 0.24
Matches are distributed among these distances:
14 28 0.33
15 3 0.03
16 6 0.07
17 6 0.07
18 3 0.03
19 40 0.47
ACGTcount: A:0.44, C:0.19, G:0.24, T:0.14
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:1854045 original size:33 final size:33
Alignment explanation
Indices: 1854003--1854129 Score: 220
Period size: 33 Copynumber: 3.8 Consensus size: 33
1853993 GGAAATTACT
1854003 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1854036 ATCGCAATGCGAAATGAAAATCGCAACGAGA-A
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* *
1854068 TTTCGCAATGCGAAATGAAAATCGCAACGAGGGA
1 -ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1854102 ATCGCAATGCGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
1854130 CGAATTTAGT
Statistics
Matches: 89, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
32 1 0.01
33 87 0.98
34 1 0.01
ACGTcount: A:0.43, C:0.19, G:0.24, T:0.14
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:1854110 original size:66 final size:66
Alignment explanation
Indices: 1854004--1854136 Score: 248
Period size: 66 Copynumber: 2.0 Consensus size: 66
1853994 GAAATTACTA
1854004 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGAGAAT
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGAGAAT
1854069 T
66 T
* *
1854070 TCGCAATGCGAAATGAAAATCGCAACGAGGGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGAGAAT
1854135 T
66 T
1854136 T
1 T
1854137 AGTTTCGCGT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.42, C:0.19, G:0.23, T:0.16
Consensus pattern (66 bp):
TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGAGAAT
T
Found at i:1854186 original size:33 final size:33
Alignment explanation
Indices: 1854139--1854251 Score: 172
Period size: 33 Copynumber: 3.4 Consensus size: 33
1854129 GCGAATTTAG
* *
1854139 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
* *
1854172 TTTCGCGTTACGATTCTCTCGTTGCAATTTTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
*
1854205 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCT
1 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
*
1854238 TTTCGCATTGCGAT
1 TTTCGCGTTGCGAT
1854252 AGTACTTTTT
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 72 1.00
ACGTcount: A:0.11, C:0.22, G:0.20, T:0.47
Consensus pattern (33 bp):
TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
Found at i:1854376 original size:14 final size:14
Alignment explanation
Indices: 1854357--1854393 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
1854347 CATCAATTAA
1854357 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
1854371 ACAAATCACCTTTT
1 ACAAATCAACTTTT
1854385 ACAAATCAA
1 ACAAATCAA
1854394 TTAAACAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:1855799 original size:21 final size:21
Alignment explanation
Indices: 1855745--1855844 Score: 60
Period size: 21 Copynumber: 4.8 Consensus size: 21
1855735 GCTCTTGATG
*
1855745 GGGA-GGGACCTCTTCAACGAT
1 GGGAGGGGA-CTCTTGAACGAT
* * *
1855766 GGCAGTGGCCTCTTGAACGAT
1 GGGAGGGGACTCTTGAACGAT
* *
1855787 GGGAGGGGACTCTCG-AGGAAT
1 GGGAGGGGACTCTTGAACG-AT
** * *
1855808 GATAGGGGCCTCTTCAACGAT
1 GGGAGGGGACTCTTGAACGAT
* *
1855829 AGGAGTGGACTCTTGA
1 GGGAGGGGACTCTTGA
1855845 GGATGACAGT
Statistics
Matches: 55, Mismatches: 21, Indels: 6
0.67 0.26 0.07
Matches are distributed among these distances:
20 2 0.04
21 49 0.89
22 4 0.07
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (21 bp):
GGGAGGGGACTCTTGAACGAT
Found at i:1856176 original size:92 final size:90
Alignment explanation
Indices: 1856067--1856247 Score: 285
Period size: 94 Copynumber: 2.0 Consensus size: 90
1856057 ATTTCAAACT
1856067 TTCAACCAAAAGACAAAAC-AAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGTTTAG
1 TTCAACCAAAAGACAAAACAAAAGACAAATACTAACTTCACAGTGTT-AAGAA-A-ACAG-TTAG
1856131 CAGAATTGGCAGCAACCG-ATAAATTTAC
62 CAGAATTGGCAGCAACCGAATAAATTTAC
*
1856159 TTCAACCAAAAGACAAAACAAAAAGACAAATACTAACTTCACAGTGTTAATAAAACAGTTAGCAG
1 TTCAACCAAAAGACAAAAC-AAAAGACAAATACTAACTTCACAGTGTTAAGAAAACAGTTAGCAG
*
1856224 TATTGGCAGCAACCGAATAAATTT
65 AATTGGCAGCAACCGAATAAATTT
1856248 TACTAAGCAA
Statistics
Matches: 84, Mismatches: 2, Indels: 7
0.90 0.02 0.08
Matches are distributed among these distances:
90 21 0.25
91 12 0.14
92 20 0.24
93 4 0.05
94 27 0.32
ACGTcount: A:0.48, C:0.19, G:0.13, T:0.21
Consensus pattern (90 bp):
TTCAACCAAAAGACAAAACAAAAGACAAATACTAACTTCACAGTGTTAAGAAAACAGTTAGCAGA
ATTGGCAGCAACCGAATAAATTTAC
Found at i:1857945 original size:19 final size:19
Alignment explanation
Indices: 1857913--1857998 Score: 87
Period size: 19 Copynumber: 4.8 Consensus size: 19
1857903 TCTTTTGGTT
1857913 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGA
* *
1857932 GATAATG-GAATCGCAACGC
1 GA-AATGAAAATCGCAACGA
1857951 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGA
*
1857970 G--A-G--AATCGCAACGC
1 GAAATGAAAATCGCAACGA
1857984 GAAATG-AAATCGCAA
1 GAAATGAAAATCGCAA
1857999 TGCGATTTTG
Statistics
Matches: 56, Mismatches: 5, Indels: 13
0.76 0.07 0.18
Matches are distributed among these distances:
14 11 0.20
16 2 0.04
17 2 0.04
18 12 0.21
19 25 0.45
20 4 0.07
ACGTcount: A:0.47, C:0.19, G:0.23, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGA
Found at i:1857981 original size:33 final size:35
Alignment explanation
Indices: 1857913--1857998 Score: 124
Period size: 38 Copynumber: 2.5 Consensus size: 35
1857903 TCTTTTGGTT
1857913 GAAATGAAAATCGCAACGAGATAATGGAATCGCAACGC
1 GAAATGAAAATCGCAACGAG--AA-GGAATCGCAACGC
1857951 GAAATGAAAATCGCAACGAG-A-GAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAAGGAATCGCAACGC
1857984 GAAATG-AAATCGCAA
1 GAAATGAAAATCGCAA
1857999 TGCGATTTTG
Statistics
Matches: 48, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
32 9 0.19
33 18 0.38
35 1 0.02
38 20 0.42
ACGTcount: A:0.47, C:0.19, G:0.23, T:0.12
Consensus pattern (35 bp):
GAAATGAAAATCGCAACGAGAAGGAATCGCAACGC
Found at i:1858021 original size:19 final size:18
Alignment explanation
Indices: 1857999--1858065 Score: 80
Period size: 19 Copynumber: 3.5 Consensus size: 18
1857989 GAAATCGCAA
*
1857999 TGCGATTTTGGTTTCGCGT
1 TGCGATTTT-ATTTCGCGT
1858018 TGCGATTTTTATTTCGCGT
1 TGCGA-TTTTATTTCGCGT
*
1858037 TGCGATAGTTATTTCCGCGT
1 TGCGAT-TTTATTT-CGCGT
1858057 TGCGATTTT
1 TGCGATTTT
1858066 CATTCTCGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
18 1 0.02
19 26 0.62
20 15 0.36
ACGTcount: A:0.10, C:0.16, G:0.25, T:0.48
Consensus pattern (18 bp):
TGCGATTTTATTTCGCGT
Found at i:1858653 original size:41 final size:40
Alignment explanation
Indices: 1858597--1858707 Score: 132
Period size: 41 Copynumber: 2.7 Consensus size: 40
1858587 CGATAGTAAG
* *
1858597 ATTCGCATTGCGATTTACGTATTCGCATTGCGATTTTCCT
1 ATTCGCATTGCGATTTACCTATTCGCATTGCGATTTACCT
* * * * *
1858637 AATTCGCATTGTGATTTACTTAATCGCGTTGCGATTTACGT
1 -ATTCGCATTGCGATTTACCTATTCGCATTGCGATTTACCT
*
1858678 ATTCGCATTGCGATTTTCCTAATTCGCATT
1 ATTCGCATTGCGATTTACCT-ATTCGCATT
1858708 ACCAGAGTCT
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
40 17 0.29
41 41 0.71
ACGTcount: A:0.20, C:0.21, G:0.17, T:0.42
Consensus pattern (40 bp):
ATTCGCATTGCGATTTACCTATTCGCATTGCGATTTACCT
Found at i:1858692 original size:20 final size:20
Alignment explanation
Indices: 1858579--1858707 Score: 134
Period size: 20 Copynumber: 6.3 Consensus size: 20
1858569 GCTATGTAAA
* *
1858579 TCGCATTGCGATAGTAAG-AT
1 TCGCATTGCGAT-TTACGTAT
1858599 TCGCATTGCGATTTACGTAT
1 TCGCATTGCGATTTACGTAT
* *
1858619 TCGCATTGCGATTTTCCTAAT
1 TCGCATTGCGATTTACGT-AT
* * *
1858640 TCGCATTGTGATTTACTTAA
1 TCGCATTGCGATTTACGTAT
*
1858660 TCGCGTTGCGATTTACGTAT
1 TCGCATTGCGATTTACGTAT
* *
1858680 TCGCATTGCGATTTTCCTAAT
1 TCGCATTGCGATTTACGT-AT
1858701 TCGCATT
1 TCGCATT
1858708 ACCAGAGTCT
Statistics
Matches: 91, Mismatches: 15, Indels: 5
0.82 0.14 0.05
Matches are distributed among these distances:
19 3 0.03
20 62 0.68
21 26 0.29
ACGTcount: A:0.21, C:0.20, G:0.19, T:0.40
Consensus pattern (20 bp):
TCGCATTGCGATTTACGTAT
Found at i:1861189 original size:65 final size:65
Alignment explanation
Indices: 1861074--1861204 Score: 246
Period size: 65 Copynumber: 2.0 Consensus size: 65
1861064 TTTAAACAAA
1861074 TACTACCTTATATCTATCCTAGATTAATCGGAAAAACATATTAATAATTTTCTCAAATTTTTGGG
1 TACTACCTTATATCTATCCTAGATTAATCGGAAAAACATATTAATAATTTTCTCAAATTTTTGGG
1861139 TACTACCTTATATCTATCCTAGATTAATCGGAAAAACCATATTAAT-ATTTTCTCAAATTTTTGG
1 TACTACCTTATATCTATCCTAGATTAATCGGAAAAA-CATATTAATAATTTTCTCAAATTTTTGG
1861203 G
65 G
1861204 T
1 T
1861205 CATGTCCCCT
Statistics
Matches: 65, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
65 56 0.86
66 9 0.14
ACGTcount: A:0.34, C:0.16, G:0.09, T:0.40
Consensus pattern (65 bp):
TACTACCTTATATCTATCCTAGATTAATCGGAAAAACATATTAATAATTTTCTCAAATTTTTGGG
Found at i:1870621 original size:21 final size:21
Alignment explanation
Indices: 1870570--1870622 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
1870560 ATTATGACTA
*
1870570 TCGCAATGTGATTTTCCAATT
1 TCGCAATGCGATTTTCCAATT
**
1870591 TCGCGTTGCGATTTTCCCAA-T
1 TCGCAATGCGATTTT-CCAATT
1870612 TCGCAATGCGA
1 TCGCAATGCGA
1870623 ATAAGTAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.36
Consensus pattern (21 bp):
TCGCAATGCGATTTTCCAATT
Found at i:1870655 original size:21 final size:20
Alignment explanation
Indices: 1870612--1870679 Score: 91
Period size: 21 Copynumber: 3.3 Consensus size: 20
1870602 TTTTCCCAAT
** *
1870612 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATTTGAAAA
1870632 TCGCAATGCGAATTTGAAAAA
1 TCGCAATGCGAATTTG-AAAA
1870653 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTT-GAAAA
1870674 TCGCAA
1 TCGCAA
1870680 CGCGGTACTG
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
20 14 0.33
21 28 0.65
22 1 0.02
ACGTcount: A:0.41, C:0.16, G:0.21, T:0.22
Consensus pattern (20 bp):
TCGCAATGCGAATTTGAAAA
Found at i:1870697 original size:41 final size:41
Alignment explanation
Indices: 1870670--1870806 Score: 138
Period size: 41 Copynumber: 3.4 Consensus size: 41
1870660 GCGAATTTGG
*
1870670 AAAATCGCAACGCGGTACTGACTATCGCAACGCGATAATAC
1 AAAATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
*
1870711 AAAATCGCAACGCGATACTGACTTTCGCAA--C--TAATAC
1 AAAATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
** * * * *
1870748 TTAATTTCGCAACTCAATACTGACTTTCGCAACGAGATAATAC
1 --AAAATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
* *
1870791 ATAATCGCAATGCGAT
1 AAAATCGCAACGCGAT
1870807 TTTCAAAGCG
Statistics
Matches: 77, Mismatches: 13, Indels: 12
0.75 0.13 0.12
Matches are distributed among these distances:
37 6 0.08
39 27 0.35
41 38 0.49
43 6 0.08
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.23
Consensus pattern (41 bp):
AAAATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
Found at i:1870698 original size:20 final size:20
Alignment explanation
Indices: 1870673--1870786 Score: 79
Period size: 20 Copynumber: 5.7 Consensus size: 20
1870663 AATTTGGAAA
*
1870673 ATCGCAACGCGGTACTGACT
1 ATCGCAACGCGATACTGACT
* *
1870693 ATCGCAACGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
1870714 ATCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* ** * *
1870734 TTCGCAAC-TAATACTTAAT
1 ATCGCAACGCGATACTGACT
* * *
1870753 TTCGCAACTCAATACTGACT
1 ATCGCAACGCGATACTGACT
* *
1870773 TTCGCAACGAGATA
1 ATCGCAACGCGATA
1870787 ATACATAATC
Statistics
Matches: 74, Mismatches: 16, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
19 17 0.23
20 40 0.54
21 15 0.20
22 2 0.03
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:1870755 original size:19 final size:20
Alignment explanation
Indices: 1870715--1870780 Score: 80
Period size: 20 Copynumber: 3.4 Consensus size: 20
1870705 TAATACAAAA
* * *
1870715 TCGCAACGCGATACTGACTT
1 TCGCAACTCAATACTGAATT
*
1870735 TCGCAACT-AATACTTAATT
1 TCGCAACTCAATACTGAATT
*
1870754 TCGCAACTCAATACTGACTT
1 TCGCAACTCAATACTGAATT
1870774 TCGCAAC
1 TCGCAAC
1870781 GAGATAATAC
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
19 16 0.41
20 23 0.59
ACGTcount: A:0.30, C:0.29, G:0.12, T:0.29
Consensus pattern (20 bp):
TCGCAACTCAATACTGAATT
Found at i:1875395 original size:2 final size:2
Alignment explanation
Indices: 1875388--1875439 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
1875378 GATAGAAGTG
1875388 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1875430 AT AT AT AT AT
1 AT AT AT AT AT
1875440 TTACATAAGC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1875868 original size:22 final size:22
Alignment explanation
Indices: 1875840--1875929 Score: 153
Period size: 22 Copynumber: 4.1 Consensus size: 22
1875830 AGTCGAGGGT
1875840 TATACAGTGGTCCTTCGGGACA
1 TATACAGTGGTCCTTCGGGACA
*
1875862 TATACAGTGGTCTTTCGGGACA
1 TATACAGTGGTCCTTCGGGACA
1875884 TATACAGTGGTCCTTCGGGACA
1 TATACAGTGGTCCTTCGGGACA
**
1875906 TATACAGTGGTTTTTCGGGACA
1 TATACAGTGGTCCTTCGGGACA
1875928 TA
1 TA
1875930 ATGGTCCTTC
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 64 1.00
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (22 bp):
TATACAGTGGTCCTTCGGGACA
Found at i:1875903 original size:44 final size:44
Alignment explanation
Indices: 1875840--1875929 Score: 171
Period size: 44 Copynumber: 2.0 Consensus size: 44
1875830 AGTCGAGGGT
1875840 TATACAGTGGTCCTTCGGGACATATACAGTGGTCTTTCGGGACA
1 TATACAGTGGTCCTTCGGGACATATACAGTGGTCTTTCGGGACA
*
1875884 TATACAGTGGTCCTTCGGGACATATACAGTGGTTTTTCGGGACA
1 TATACAGTGGTCCTTCGGGACATATACAGTGGTCTTTCGGGACA
1875928 TA
1 TA
1875930 ATGGTCCTTC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (44 bp):
TATACAGTGGTCCTTCGGGACATATACAGTGGTCTTTCGGGACA
Found at i:1879566 original size:65 final size:64
Alignment explanation
Indices: 1879496--1879651 Score: 233
Period size: 65 Copynumber: 2.4 Consensus size: 64
1879486 TGCACTAAGG
* *
1879496 GTGCATCGATGCATAAATTGCATTCGATGTTTCAA-ACAAGCCTGGAGTGCATCGATGCATGATA
1 GTGCATCGATGCATAAAATGCATTCGATGTTTCAATA-AAACCTGGAGTGCATCGATGCATGA-A
1879560 T
64 T
* * * *
1879561 GTGCATCGATGCATAAAATGCATTCGATGTTTTAATAAAATCTTGAGTGCATCGATGCATGACT
1 GTGCATCGATGCATAAAATGCATTCGATGTTTCAATAAAACCTGGAGTGCATCGATGCATGAAT
1879625 GTGCATCGATGCATAAAATGCATTCGA
1 GTGCATCGATGCATAAAATGCATTCGA
1879652 AATGGGGTGT
Statistics
Matches: 84, Mismatches: 6, Indels: 3
0.90 0.06 0.03
Matches are distributed among these distances:
64 28 0.33
65 55 0.65
66 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (64 bp):
GTGCATCGATGCATAAAATGCATTCGATGTTTCAATAAAACCTGGAGTGCATCGATGCATGAAT
Found at i:1880281 original size:27 final size:27
Alignment explanation
Indices: 1880251--1880307 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
1880241 CTAAATGATG
* * *
1880251 CAAAAATCTAATAAACCAATATAAGTT
1 CAAAAACCAAATAAACAAATATAAGTT
* *
1880278 CAAAAACCAAATATATAAATATAAGTT
1 CAAAAACCAAATAAACAAATATAAGTT
1880305 CAA
1 CAA
1880308 GCATTGAAAG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.58, C:0.14, G:0.04, T:0.25
Consensus pattern (27 bp):
CAAAAACCAAATAAACAAATATAAGTT
Found at i:1882353 original size:45 final size:44
Alignment explanation
Indices: 1882274--1882369 Score: 124
Period size: 45 Copynumber: 2.2 Consensus size: 44
1882264 TGCTAAATGC
* * *
1882274 ATCGATATACATTCAAGGAGTGCATCGGTGCATCTTTAT-GATGT
1 ATCGATGTACATTCAAGGAGTGCATCGATGCATCTTCATAG-TGT
1882318 ATCGATGTACATTCATAGG-GATGCATCGATGCATCTTCATAGTGT
1 ATCGATGTACATTCA-AGGAG-TGCATCGATGCATCTTCATAGTGT
1882363 ATCGATG
1 ATCGATG
1882370 CATTATGCAC
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
44 15 0.33
45 30 0.65
46 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (44 bp):
ATCGATGTACATTCAAGGAGTGCATCGATGCATCTTCATAGTGT
Found at i:1888008 original size:21 final size:21
Alignment explanation
Indices: 1887979--1888035 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
1887969 TGGGAGTGTG
1887979 GGTGCATCGATGCATAGTCAA
1 GGTGCATCGATGCATAGTCAA
*
1888000 GGTGAATCGATGCATAGTCAA
1 GGTGCATCGATGCATAGTCAA
*
1888021 AGTGCATCGATGCAT
1 GGTGCATCGATGCAT
1888036 CAAGTGTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.25
Consensus pattern (21 bp):
GGTGCATCGATGCATAGTCAA
Found at i:1888189 original size:65 final size:64
Alignment explanation
Indices: 1888097--1888243 Score: 156
Period size: 65 Copynumber: 2.3 Consensus size: 64
1888087 CACTAAGGGT
* * * * **
1888097 GCATCGATGCATAAATTGCTTTCGATG-TTTCAAACTAGCATGGAGTGCATCGATGCATGGTA-T
1 GCATCAATGCATAAAATGATTTCGATGTTTTAAAAAAAGCAT-GAGTGCATCGATGCAT-G-ACT
1888160 GC
63 GC
* * *
1888162 GCATCAATGCATAAAATGAATTT-GATGTTTTAAAAAAATCCTGAGTGCATCGATGCATGACTGT
1 GCATCAATGCATAAAATG-ATTTCGATGTTTTAAAAAAAGCATGAGTGCATCGATGCATGACTGC
1888226 GCATCAATGCATAAAATG
1 GCATCAATGCATAAAATG
1888244 CATTCGAAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
63 1 0.01
64 21 0.30
65 36 0.51
66 12 0.17
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (64 bp):
GCATCAATGCATAAAATGATTTCGATGTTTTAAAAAAAGCATGAGTGCATCGATGCATGACTGC
Done.