Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008005.1 Hibiscus syriacus cultivar Beakdansim tig00110467_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1778185
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
File 3 of 7
Found at i:641756 original size:33 final size:33
Alignment explanation
Indices: 641710--641887 Score: 146
Period size: 33 Copynumber: 5.2 Consensus size: 33
641700 GCAACGAGAA
*
641710 TGCGATTCACTCGTTGCGATTTTCATTTCGCAT
1 TGCGATTCTCTCGTTGCGATTTTCATTTCGCAT
641743 TGCGATTCTCTCGTTGCGATTTTCATTTCGCAT
1 TGCGATTCTCTCGTTGCGATTTTCATTTCGCAT
* * * * * *
641776 TGCAATT-TTTCATTTTGC-A-TTGCGATTCTCTCGT
1 TGCGATTCTCTC--GTTGCGATTTTC-ATT-TCGCAT
*
641810 TGCGATAGTCATTTCGCATTGCGATTTTCATTTCGCAT
1 TGCGAT--TC-TCTCG--TTGCGATTTTCATTTCGCAT
** *
641848 TGCGATTCTCTCGTTGCGATAGTCATTTCCGCGT
1 TGCGATTCTCTCGTTGCGATTTTCATTT-CGCAT
641882 TGCGAT
1 TGCGAT
641888 AGTCTGTTTT
Statistics
Matches: 116, Mismatches: 16, Indels: 25
0.74 0.10 0.16
Matches are distributed among these distances:
32 6 0.05
33 55 0.47
34 23 0.20
35 4 0.03
36 3 0.03
38 18 0.16
39 4 0.03
40 3 0.03
ACGTcount: A:0.15, C:0.23, G:0.19, T:0.43
Consensus pattern (33 bp):
TGCGATTCTCTCGTTGCGATTTTCATTTCGCAT
Found at i:641807 original size:53 final size:52
Alignment explanation
Indices: 641723--641876 Score: 254
Period size: 53 Copynumber: 2.9 Consensus size: 52
641713 GATTCACTCG
* **
641723 TTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCA
1 TTGCAATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATAGTCATTTCGCA
*
641775 TTGCAATTTTTCATTTTGCATTGCGATTCTCTCGTTGCGATAGTCATTTCGCA
1 TTGCAA-TTTTCATTTCGCATTGCGATTCTCTCGTTGCGATAGTCATTTCGCA
*
641828 TTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATAGTCATTTC
1 TTGCAATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATAGTCATTTC
641877 CGCGTTGCGA
Statistics
Matches: 95, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
52 47 0.49
53 48 0.51
ACGTcount: A:0.15, C:0.22, G:0.18, T:0.45
Consensus pattern (52 bp):
TTGCAATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATAGTCATTTCGCA
Found at i:641884 original size:20 final size:19
Alignment explanation
Indices: 641807--641891 Score: 81
Period size: 19 Copynumber: 4.7 Consensus size: 19
641797 GCGATTCTCT
641807 CGTTGCGATAGTCATTTCG
1 CGTTGCGATAGTCATTTCG
* **
641826 CATTGCGATTTTCATTTCG
1 CGTTGCGATAGTCATTTCG
* *
641845 CATTGCGAT--TC---TCT
1 CGTTGCGATAGTCATTTCG
641859 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTT-CG
641879 CGTTGCGATAGTC
1 CGTTGCGATAGTC
641892 TGTTTTGCAT
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
14 10 0.19
16 2 0.04
17 2 0.04
19 26 0.48
20 14 0.26
ACGTcount: A:0.15, C:0.24, G:0.22, T:0.39
Consensus pattern (19 bp):
CGTTGCGATAGTCATTTCG
Found at i:642008 original size:14 final size:14
Alignment explanation
Indices: 641989--642025 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
641979 CATCAATTAA
641989 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
642003 ACAAATCATCTTTT
1 ACAAATCAACATTT
642017 ACAAATCAA
1 ACAAATCAA
642026 TTAAACAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:643289 original size:21 final size:21
Alignment explanation
Indices: 643208--643294 Score: 84
Period size: 21 Copynumber: 4.1 Consensus size: 21
643198 GAATGTTGGG
* *
643208 AGGGACCTCTTCAACGATGAC
1 AGGGGCCTCTTGAACGATGAC
* * **
643229 AGTGGCCTCTTGAACGGTGGG
1 AGGGGCCTCTTGAACGATGAC
* ** *
643250 AGGGGACTCTTGAGGGATGAT
1 AGGGGCCTCTTGAACGATGAC
643271 AGGGGCCTCTTGAACGATGAC
1 AGGGGCCTCTTGAACGATGAC
643292 AGG
1 AGG
643295 TGAGTCAGGC
Statistics
Matches: 49, Mismatches: 17, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 49 1.00
ACGTcount: A:0.23, C:0.20, G:0.37, T:0.21
Consensus pattern (21 bp):
AGGGGCCTCTTGAACGATGAC
Found at i:643802 original size:94 final size:94
Alignment explanation
Indices: 643641--643963 Score: 522
Period size: 94 Copynumber: 3.4 Consensus size: 94
643631 TTCAATGACA
* *
643641 ACACAGTTTAGTAGAATTGGCAGCAACCAAACAAATTTACTTTCAACCAAAAGACAAAACAAAGA
1 ACACAGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGA
643706 CAAATACTAACTTCACAGTGTTAAAGAAT
66 CAAATACTAACTTCACAGTGTTAAAGAAT
643735 ACACAGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGA
1 ACACAGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGA
643800 CAAATACTAACTTCACAGTGTTAAAGAAT
66 CAAATACTAACTTCACAGTGTTAAAGAAT
* * * *
643829 ATACAGTTTAGCAGAATTGGCAGCAACCGAATAAATTTA-ATTCAACCAAAAGATAAAACAAAAG
1 ACACAGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAAC-AAAG
*
643893 ACAAATACTAACTTCACAGTGTTAAAAAAT
65 ACAAATACTAACTTCACAGTGTTAAAGAAT
* * * * *
643923 AAACATTTTAGCAGTATTGGCAGCAATCGAATAAATTTACT
1 ACACAGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACT
643964 AAGCAATCTA
Statistics
Matches: 215, Mismatches: 12, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
93 18 0.08
94 197 0.92
ACGTcount: A:0.47, C:0.18, G:0.12, T:0.23
Consensus pattern (94 bp):
ACACAGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGA
CAAATACTAACTTCACAGTGTTAAAGAAT
Found at i:645677 original size:20 final size:20
Alignment explanation
Indices: 645651--645717 Score: 91
Period size: 20 Copynumber: 3.4 Consensus size: 20
645641 TGAAATGAAA
645651 ATCGCAACGA-GAGAATGACT
1 ATCGCAACGAGGA-AATGACT
* *
645671 ATTGCAACGCGGAAATGACT
1 ATCGCAACGAGGAAATGACT
*
645691 ATCGCAACGCGGAAATGACT
1 ATCGCAACGAGGAAATGACT
645711 ATCGCAA
1 ATCGCAA
645718 TGAGAGAATC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.16
Consensus pattern (20 bp):
ATCGCAACGAGGAAATGACT
Found at i:645686 original size:40 final size:40
Alignment explanation
Indices: 645642--645717 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
645632 TCTTTTGGTT
*
645642 GAAATGAAAATCGCAACGA-GAGAATGACTATTGCAACGCG
1 GAAATGAAAATCGCAACGAGGA-AATGACTATCGCAACGCG
** *
645682 GAAATGACTATCGCAACGCGGAAATGACTATCGCAA
1 GAAATGAAAATCGCAACGAGGAAATGACTATCGCAA
645718 TGAGAGAATC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 29 0.94
41 2 0.06
ACGTcount: A:0.41, C:0.20, G:0.24, T:0.16
Consensus pattern (40 bp):
GAAATGAAAATCGCAACGAGGAAATGACTATCGCAACGCG
Found at i:645748 original size:33 final size:33
Alignment explanation
Indices: 645691--645785 Score: 136
Period size: 33 Copynumber: 2.8 Consensus size: 33
645681 GGAAATGACT
**
645691 ATCGCAACGCGGAAATGACTATCGCAATGAGAGA
1 ATCGCAACGC-GAAATGAAAATCGCAATGAGAGA
* * *
645725 ATCGTAACGCGAAATTAAAATCGCAACGAGAGA
1 ATCGCAACGCGAAATGAAAATCGCAATGAGAGA
645758 ATCGCAACGCGAAATGAAAATCGCAATG
1 ATCGCAACGCGAAATGAAAATCGCAATG
645786 CGATTTTGGT
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
33 44 0.83
34 9 0.17
ACGTcount: A:0.42, C:0.20, G:0.23, T:0.15
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAATGAGAGA
Found at i:645752 original size:19 final size:19
Alignment explanation
Indices: 645724--645788 Score: 59
Period size: 19 Copynumber: 3.7 Consensus size: 19
645714 GCAATGAGAG
* *
645724 AATCGTAACGCGAAATTAA
1 AATCGCAACGCGAAATGAA
*
645743 AATCGCAA--CG--A-GAG
1 AATCGCAACGCGAAATGAA
645757 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
645776 AATCGCAATGCGA
1 AATCGCAACGCGA
645789 TTTTGGTTTC
Statistics
Matches: 36, Mismatches: 5, Indels: 10
0.71 0.10 0.20
Matches are distributed among these distances:
14 9 0.25
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 21 0.58
ACGTcount: A:0.45, C:0.20, G:0.22, T:0.14
Consensus pattern (19 bp):
AATCGCAACGCGAAATGAA
Found at i:645817 original size:19 final size:19
Alignment explanation
Indices: 645784--645905 Score: 83
Period size: 20 Copynumber: 6.5 Consensus size: 19
645774 AAAATCGCAA
**
645784 TGCGATTTTGGTTTCGTGT
1 TGCGATTTTCATTTCGTGT
*
645803 TGCGATTTTCATTTCGCGT
1 TGCGATTTTCATTTCGTGT
* *
645822 TGC-A-ATTC-TCTC--GT
1 TGCGATTTTCATTTCGTGT
* *
645836 TGCGATTTTCATTTCTCTCAT
1 TGCGATTTTCATTTC-GT-GT
*
645857 TGCGATATTCATTTTCGTGT
1 TGCGATTTTCA-TTTCGTGT
* *
645877 TGCTATTTTCATTTTCATGT
1 TGCGATTTTCA-TTTCGTGT
645897 TGCGATTTT
1 TGCGATTTT
645906 AAATTTAGAA
Statistics
Matches: 80, Mismatches: 15, Indels: 15
0.73 0.14 0.14
Matches are distributed among these distances:
14 5 0.06
15 1 0.01
16 6 0.08
17 6 0.08
18 1 0.01
19 19 0.24
20 26 0.32
21 12 0.15
22 4 0.05
ACGTcount: A:0.12, C:0.18, G:0.18, T:0.52
Consensus pattern (19 bp):
TGCGATTTTCATTTCGTGT
Found at i:646488 original size:20 final size:20
Alignment explanation
Indices: 646463--646676 Score: 198
Period size: 20 Copynumber: 10.6 Consensus size: 20
646453 CTTTAAAAAT
646463 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
646483 CGCGTTGCGATTTTACGTAT-
1 CGCGTTGCGA-TTTACGGATA
*
646503 TGTCGTTGCGATTTACGGATA
1 CG-CGTTGCGATTTACGGATA
* * *
646524 CGCATTGCGATTTACGTATT
1 CGCGTTGCGATTTACGGATA
* * *
646544 CTCATTGCGATTTACAGATA
1 CGCGTTGCGATTTACGGATA
* *
646564 CGCGTTGCGATTTACGTATT
1 CGCGTTGCGATTTACGGATA
*
646584 CTCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* * *
646604 CACGTTGCAATTTTACGTAT-
1 CGCGTTGCGA-TTTACGGATA
* * *
646624 TGTCATTGCGATTTACAGATA
1 CG-CGTTGCGATTTACGGATA
*
646645 CGCGTTGCGATTTTACAGATA
1 CGCGTTGCGA-TTTACGGATA
*
646666 CTCGTTGCGAT
1 CGCGTTGCGAT
646677 AGTCAGAATC
Statistics
Matches: 156, Mismatches: 31, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
20 105 0.67
21 51 0.33
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:646552 original size:40 final size:40
Alignment explanation
Indices: 646467--646657 Score: 283
Period size: 40 Copynumber: 4.7 Consensus size: 40
646457 AAAAATCGCG
* *
646467 TTGCGATTTACGGATACGCGTTGCGATTTTACGTATTGTCG
1 TTGCGATTTACGGATACGCGTTGCGA-TTTACGTATTCTCA
*
646508 TTGCGATTTACGGATACGCATTGCGATTTACGTATTCTCA
1 TTGCGATTTACGGATACGCGTTGCGATTTACGTATTCTCA
* *
646548 TTGCGATTTACAGATACGCGTTGCGATTTACGTATTCTCG
1 TTGCGATTTACGGATACGCGTTGCGATTTACGTATTCTCA
* * *
646588 TTGCGATTTACGGATACACGTTGCAATTTTACGTATTGTCA
1 TTGCGATTTACGGATACGCGTTGCGA-TTTACGTATTCTCA
*
646629 TTGCGATTTACAGATACGCGTTGCGATTT
1 TTGCGATTTACGGATACGCGTTGCGATTT
646658 TACAGATACT
Statistics
Matches: 135, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
40 75 0.56
41 60 0.44
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.38
Consensus pattern (40 bp):
TTGCGATTTACGGATACGCGTTGCGATTTACGTATTCTCA
Found at i:646619 original size:81 final size:81
Alignment explanation
Indices: 646467--646676 Score: 325
Period size: 81 Copynumber: 2.6 Consensus size: 81
646457 AAAAATCGCG
* * *
646467 TTGCGATTTACGGATACGCGTTGCGATTTTACGTATTGTCGTTGCGATTTACGGATACGCATTGC
1 TTGCGATTTACAGATACGCGTTGCGATTTTACGTATTCTCGTTGCGATTTACGGATACACATTGC
*
646532 GATTTACGTATTCTCA
66 AATTTACGTATTCTCA
*
646548 TTGCGATTTACAGATACGCGTTGCGA-TTTACGTATTCTCGTTGCGATTTACGGATACACGTTGC
1 TTGCGATTTACAGATACGCGTTGCGATTTTACGTATTCTCGTTGCGATTTACGGATACACATTGC
*
646612 AATTTTACGTATTGTCA
66 AA-TTTACGTATTCTCA
*
646629 TTGCGATTTACAGATACGCGTTGCGATTTTACAG-ATACTCGTTGCGAT
1 TTGCGATTTACAGATACGCGTTGCGATTTTAC-GTATTCTCGTTGCGAT
646677 AGTCAGAATC
Statistics
Matches: 119, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
80 36 0.30
81 64 0.54
82 18 0.15
83 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (81 bp):
TTGCGATTTACAGATACGCGTTGCGATTTTACGTATTCTCGTTGCGATTTACGGATACACATTGC
AATTTACGTATTCTCA
Found at i:646708 original size:20 final size:20
Alignment explanation
Indices: 646462--646737 Score: 126
Period size: 20 Copynumber: 13.7 Consensus size: 20
646452 GCTTTAAAAA
* **
646462 TCGCGTTGCGATTTACGGAT
1 TCGCGTTGCGATTTTCATAT
* *
646482 ACGCGTTGCGATTTTACGTAT
1 TCGCGTTGCGATTTT-CATAT
* **
646503 T-GTCGTTGCGATTTACGGAT
1 TCG-CGTTGCGATTTTCATAT
* * * *
646523 ACGCATTGCGATTTACGTAT
1 TCGCGTTGCGATTTTCATAT
* * * *
646543 TCTCATTGCGATTTACAGAT
1 TCGCGTTGCGATTTTCATAT
* * *
646563 ACGCGTTGCGATTTACGTAT
1 TCGCGTTGCGATTTTCATAT
* * **
646583 TCTCGTTGCGATTTACGGAT
1 TCGCGTTGCGATTTTCATAT
* * * *
646603 ACACGTTGCAATTTTACGTAT
1 TCGCGTTGCGATTTT-CATAT
* * *
646624 T-GTCATTGCGATTTACAGAT
1 TCG-CGTTGCGATTTTCATAT
* *
646644 ACGCGTTGCGATTTTACAGAT
1 TCGCGTTGCGATTTT-CATAT
* * ** * *
646665 ACTCGTTGCGATAGTCAGAA
1 TCGCGTTGCGATTTTCATAT
*
646685 TCGCGTTGCGATTTAT-ATGT
1 TCGCGTTGCGATTT-TCATAT
646705 TCGCGTTGCGATTTTCATAT
1 TCGCGTTGCGATTTTCATAT
646725 TCGCGTTGCGATT
1 TCGCGTTGCGATT
646738 CTTGAAAATC
Statistics
Matches: 199, Mismatches: 48, Indels: 18
0.75 0.18 0.07
Matches are distributed among these distances:
19 1 0.01
20 150 0.75
21 48 0.24
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.38
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCATAT
Found at i:646714 original size:81 final size:81
Alignment explanation
Indices: 646462--646737 Score: 301
Period size: 81 Copynumber: 3.4 Consensus size: 81
646452 GCTTTAAAAA
* * *
646462 TCGCGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTGTCGTTGCGATTTACGGATACGC
1 TCGCATTGCGATTTACAGATACGCGTTGCGATTTTACGTATTCTCGTTGCGATTTACGGATACGC
* ** *
646527 ATTGCGATTTACGTAT
66 GTTGCGATTTATATGT
* *
646543 TCTCATTGCGATTTACAGATACGCGTTGCGA-TTTACGTATTCTCGTTGCGATTTACGGATACAC
1 TCGCATTGCGATTTACAGATACGCGTTGCGATTTTACGTATTCTCGTTGCGATTTACGGATACGC
* *
646607 GTTGCAATTT-TACGT
66 GTTGCGATTTATATGT
* * * *
646622 ATTGTCATTGCGATTTACAGATACGCGTTGCGATTTTACAG-ATACTCGTTGCGATAGT-CAGA-
1 -TCG-CATTGCGATTTACAGATACGCGTTGCGATTTTAC-GTATTCTCGTTGCGAT-TTACGGAT
646684 ATCGCGTTGCGATTTATATGT
62 A-CGCGTTGCGATTTATATGT
* * * *
646705 TCGCGTTGCGATTTTCATATTCGCGTTGCGATT
1 TCGCATTGCGATTTACAGATACGCGTTGCGATT
646738 CTTGAAAATC
Statistics
Matches: 164, Mismatches: 24, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
79 1 0.01
80 40 0.24
81 83 0.51
82 34 0.21
83 6 0.04
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.38
Consensus pattern (81 bp):
TCGCATTGCGATTTACAGATACGCGTTGCGATTTTACGTATTCTCGTTGCGATTTACGGATACGC
GTTGCGATTTATATGT
Found at i:646755 original size:21 final size:22
Alignment explanation
Indices: 646731--646782 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 22
646721 ATATTCGCGT
646731 TGCGATTCTTG-AAAATCGCAA
1 TGCGATTCTTGTAAAATCGCAA
* ** *
646752 TGCGAAT-TTGTACTATCGCAT
1 TGCGATTCTTGTAAAATCGCAA
646773 TGCGATTCTT
1 TGCGATTCTT
646783 CATAATCCCG
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
20 3 0.12
21 19 0.79
22 2 0.08
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (22 bp):
TGCGATTCTTGTAAAATCGCAA
Found at i:647742 original size:14 final size:13
Alignment explanation
Indices: 647723--647752 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
647713 TTAATCACTC
647723 AAAAAATATATGTT
1 AAAAAATATAT-TT
647737 AAAAAATATATTT
1 AAAAAATATATTT
647750 AAA
1 AAA
647753 TAGTTAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (13 bp):
AAAAAATATATTT
Found at i:648044 original size:61 final size:61
Alignment explanation
Indices: 647949--648072 Score: 248
Period size: 61 Copynumber: 2.0 Consensus size: 61
647939 ATAAGCAATA
647949 CCATATATGCTTTCTCCCCAACTTTATTTCCTAAGAATGATCCGTGAATTACGAGCATTGT
1 CCATATATGCTTTCTCCCCAACTTTATTTCCTAAGAATGATCCGTGAATTACGAGCATTGT
648010 CCATATATGCTTTCTCCCCAACTTTATTTCCTAAGAATGATCCGTGAATTACGAGCATTGT
1 CCATATATGCTTTCTCCCCAACTTTATTTCCTAAGAATGATCCGTGAATTACGAGCATTGT
648071 CC
1 CC
648073 GGTCATAAAA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 63 1.00
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.35
Consensus pattern (61 bp):
CCATATATGCTTTCTCCCCAACTTTATTTCCTAAGAATGATCCGTGAATTACGAGCATTGT
Found at i:653185 original size:37 final size:35
Alignment explanation
Indices: 653143--653250 Score: 131
Period size: 37 Copynumber: 3.2 Consensus size: 35
653133 TTTATTTTGA
653143 TCGGGTCGGGTTTTTTAAGTGTGATATTCGGGTCGAG
1 TCGGGTC-GGTTTTTTAAGTGTGATATTCGGGTCG-G
653180 TCGGGTCGAGTTTTTTAAGTGTGATATTC--G--GG
1 TCGGGTCG-GTTTTTTAAGTGTGATATTCGGGTCGG
653212 TCGGGT---TTTTTTAAGTGTGATATTCGGGTCGGG
1 TCGGGTCGGTTTTTTAAGTGTGATATTCGGGTC-GG
653245 TCGGGT
1 TCGGGT
653251 TTAGGGTAAA
Statistics
Matches: 65, Mismatches: 0, Indels: 16
0.80 0.00 0.20
Matches are distributed among these distances:
28 19 0.29
30 1 0.02
32 7 0.11
33 9 0.14
35 1 0.02
36 1 0.02
37 27 0.42
ACGTcount: A:0.13, C:0.10, G:0.37, T:0.40
Consensus pattern (35 bp):
TCGGGTCGGTTTTTTAAGTGTGATATTCGGGTCGG
Found at i:653230 original size:28 final size:28
Alignment explanation
Indices: 653180--653245 Score: 116
Period size: 28 Copynumber: 2.4 Consensus size: 28
653170 TCGGGTCGAG
*
653180 TCGGGTCGAG-TTTTTTAAGTGTGATAT
1 TCGGGTCGGGTTTTTTTAAGTGTGATAT
653207 TCGGGTCGGGTTTTTTTAAGTGTGATAT
1 TCGGGTCGGGTTTTTTTAAGTGTGATAT
653235 TCGGGTCGGGT
1 TCGGGTCGGGT
653246 CGGGTTTAGG
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
27 9 0.24
28 28 0.76
ACGTcount: A:0.14, C:0.09, G:0.35, T:0.42
Consensus pattern (28 bp):
TCGGGTCGGGTTTTTTTAAGTGTGATAT
Found at i:653909 original size:18 final size:18
Alignment explanation
Indices: 653795--653908 Score: 183
Period size: 18 Copynumber: 6.3 Consensus size: 18
653785 TGACATATTC
653795 CAATTCTTTCACAGATTT
1 CAATTCTTTCACAGATTT
653813 CAATTCTTTCACAGATTT
1 CAATTCTTTCACAGATTT
*
653831 CAATTGTTTCACAGATTT
1 CAATTCTTTCACAGATTT
*
653849 CAATTTTTTCACAGATTT
1 CAATTCTTTCACAGATTT
*
653867 CAATTCCTTCACAGATTT
1 CAATTCTTTCACAGATTT
* *
653885 CAATTCCTTCCCAGATTT
1 CAATTCTTTCACAGATTT
653903 CAATTC
1 CAATTC
653909 CCTCGTAAAC
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 91 1.00
ACGTcount: A:0.27, C:0.24, G:0.06, T:0.43
Consensus pattern (18 bp):
CAATTCTTTCACAGATTT
Found at i:654585 original size:43 final size:43
Alignment explanation
Indices: 654524--654611 Score: 158
Period size: 43 Copynumber: 2.0 Consensus size: 43
654514 GTTAATCCGA
*
654524 ATCATCCTACTATTCAATTTGAACTGATTCTAGTAGTATACGT
1 ATCATCCTACTATGCAATTTGAACTGATTCTAGTAGTATACGT
*
654567 ATCATCCTACTATGCAATTTGAACTGATTCTTGTAGTATACGT
1 ATCATCCTACTATGCAATTTGAACTGATTCTAGTAGTATACGT
654610 AT
1 AT
654612 AATATGTTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.40
Consensus pattern (43 bp):
ATCATCCTACTATGCAATTTGAACTGATTCTAGTAGTATACGT
Found at i:664069 original size:25 final size:25
Alignment explanation
Indices: 664036--664089 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
664026 ATCATCTTCA
* * *
664036 ATCTCTTACATAACACATTCCTTTC
1 ATCTATTACACAACACACTCCTTTC
*
664061 ATCTATTACACAATACACTCCTTTC
1 ATCTATTACACAACACACTCCTTTC
664086 ATCT
1 ATCT
664090 TCAATCTCTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.30, C:0.31, G:0.00, T:0.39
Consensus pattern (25 bp):
ATCTATTACACAACACACTCCTTTC
Found at i:664115 original size:32 final size:32
Alignment explanation
Indices: 664061--664121 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
664051 CATTCCTTTC
* *
664061 ATCTATTACACAATACACTCCTTTCATCTTCA
1 ATCTATTACACAACACAATCCTTTCATCTTCA
*
664093 ATCTCTTACACAACACAATCCTTTCATCT
1 ATCTATTACACAACACAATCCTTTCATCT
664122 AACCAAATAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.31, C:0.33, G:0.00, T:0.36
Consensus pattern (32 bp):
ATCTATTACACAACACAATCCTTTCATCTTCA
Found at i:664121 original size:25 final size:25
Alignment explanation
Indices: 664036--664121 Score: 64
Period size: 25 Copynumber: 3.2 Consensus size: 25
664026 ATCATCTTCA
* *
664036 ATCTCTTACATAACACATTCCTTTC
1 ATCTCTTACACAACACAATCCTTTC
* * *
664061 ATCTATTACACAATACACTCCTTTCATCTTC
1 ATCTCTTACACAACACAAT-C---C-T-TTC
664092 AATCTCTTACACAACACAATCCTTTC
1 -ATCTCTTACACAACACAATCCTTTC
664118 ATCT
1 ATCT
664122 AACCAAATAC
Statistics
Matches: 47, Mismatches: 7, Indels: 14
0.69 0.10 0.21
Matches are distributed among these distances:
25 19 0.40
26 4 0.09
27 1 0.02
28 1 0.02
29 1 0.02
30 1 0.02
31 4 0.09
32 16 0.34
ACGTcount: A:0.30, C:0.33, G:0.00, T:0.37
Consensus pattern (25 bp):
ATCTCTTACACAACACAATCCTTTC
Found at i:665902 original size:12 final size:13
Alignment explanation
Indices: 665887--665941 Score: 55
Period size: 12 Copynumber: 4.5 Consensus size: 13
665877 TTAAAATATA
665887 TATTATAT-TTAT
1 TATTATATATTAT
665899 TATTATATATTA-
1 TATTATATATTAT
* *
665911 TAGTATAT-TAAAT
1 TATTATATAT-TAT
665924 TATTAT-TATTAT
1 TATTATATATTAT
665936 TATTAT
1 TATTAT
665942 TTAGTTTATT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
11 1 0.03
12 25 0.71
13 9 0.26
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (13 bp):
TATTATATATTAT
Found at i:666345 original size:24 final size:24
Alignment explanation
Indices: 666313--666366 Score: 108
Period size: 24 Copynumber: 2.2 Consensus size: 24
666303 GATAATAGGA
666313 GAGGAGGAGAACCATCAAGGATTC
1 GAGGAGGAGAACCATCAAGGATTC
666337 GAGGAGGAGAACCATCAAGGATTC
1 GAGGAGGAGAACCATCAAGGATTC
666361 GAGGAG
1 GAGGAG
666367 AAAACGGATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.37, C:0.15, G:0.37, T:0.11
Consensus pattern (24 bp):
GAGGAGGAGAACCATCAAGGATTC
Found at i:676581 original size:14 final size:13
Alignment explanation
Indices: 676562--676591 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
676552 TTAATCACTC
676562 AAAAAATATATGTT
1 AAAAAATATAT-TT
676576 AAAAAATATATTT
1 AAAAAATATATTT
676589 AAA
1 AAA
676592 TAGTTAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (13 bp):
AAAAAATATATTT
Found at i:676883 original size:61 final size:61
Alignment explanation
Indices: 676788--676911 Score: 248
Period size: 61 Copynumber: 2.0 Consensus size: 61
676778 ATAAGCAATA
676788 CCATATATGCTTTCTCCCCAACTTTATTTCCTAAGAATGATCCGTGAATTACGAGCATTGT
1 CCATATATGCTTTCTCCCCAACTTTATTTCCTAAGAATGATCCGTGAATTACGAGCATTGT
676849 CCATATATGCTTTCTCCCCAACTTTATTTCCTAAGAATGATCCGTGAATTACGAGCATTGT
1 CCATATATGCTTTCTCCCCAACTTTATTTCCTAAGAATGATCCGTGAATTACGAGCATTGT
676910 CC
1 CC
676912 GGTCATAAAA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 63 1.00
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.35
Consensus pattern (61 bp):
CCATATATGCTTTCTCCCCAACTTTATTTCCTAAGAATGATCCGTGAATTACGAGCATTGT
Found at i:678661 original size:60 final size:61
Alignment explanation
Indices: 678561--678678 Score: 193
Period size: 60 Copynumber: 2.0 Consensus size: 61
678551 TAGGTGCCTA
* *
678561 AAGAAGTTTTCGTTAAAAAATAGGTGCATAATATTTTCTCTGTTACACTTTCAAGTGCATG
1 AAGAAGTTTTCGTTAAAAAACAGGTACATAATATTTTCTCTGTTACACTTTCAAGTGCATG
* *
678622 AAGAAGTTTTCGTT-AAAAACAGGTACATAATGTTTTCTCTGTTACACTTTCAGGTGC
1 AAGAAGTTTTCGTTAAAAAACAGGTACATAATATTTTCTCTGTTACACTTTCAAGTGC
678679 CTATGTAGTA
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
60 39 0.74
61 14 0.26
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.37
Consensus pattern (61 bp):
AAGAAGTTTTCGTTAAAAAACAGGTACATAATATTTTCTCTGTTACACTTTCAAGTGCATG
Found at i:682028 original size:37 final size:35
Alignment explanation
Indices: 681986--682093 Score: 131
Period size: 37 Copynumber: 3.2 Consensus size: 35
681976 TTTATTTTGA
681986 TCGGGTCGGGTTTTTTAAGTGTGATATTCGGGTCGAG
1 TCGGGTC-GGTTTTTTAAGTGTGATATTCGGGTCG-G
682023 TCGGGTCGAGTTTTTTAAGTGTGATATTC--G--GG
1 TCGGGTCG-GTTTTTTAAGTGTGATATTCGGGTCGG
682055 TCGGGT---TTTTTTAAGTGTGATATTCGGGTCGGG
1 TCGGGTCGGTTTTTTAAGTGTGATATTCGGGTC-GG
682088 TCGGGT
1 TCGGGT
682094 TTAGGGTAAA
Statistics
Matches: 65, Mismatches: 0, Indels: 16
0.80 0.00 0.20
Matches are distributed among these distances:
28 19 0.29
30 1 0.02
32 7 0.11
33 9 0.14
35 1 0.02
36 1 0.02
37 27 0.42
ACGTcount: A:0.13, C:0.10, G:0.37, T:0.40
Consensus pattern (35 bp):
TCGGGTCGGTTTTTTAAGTGTGATATTCGGGTCGG
Found at i:682073 original size:28 final size:28
Alignment explanation
Indices: 682023--682088 Score: 116
Period size: 28 Copynumber: 2.4 Consensus size: 28
682013 TCGGGTCGAG
*
682023 TCGGGTCGAG-TTTTTTAAGTGTGATAT
1 TCGGGTCGGGTTTTTTTAAGTGTGATAT
682050 TCGGGTCGGGTTTTTTTAAGTGTGATAT
1 TCGGGTCGGGTTTTTTTAAGTGTGATAT
682078 TCGGGTCGGGT
1 TCGGGTCGGGT
682089 CGGGTTTAGG
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
27 9 0.24
28 28 0.76
ACGTcount: A:0.14, C:0.09, G:0.35, T:0.42
Consensus pattern (28 bp):
TCGGGTCGGGTTTTTTTAAGTGTGATAT
Found at i:682663 original size:18 final size:18
Alignment explanation
Indices: 682640--682754 Score: 185
Period size: 18 Copynumber: 6.4 Consensus size: 18
682630 TGACATATTC
*
682640 CAATTCTTTCACAGATTT
1 CAATTCCTTCACAGATTT
*
682658 CAATTCTTTCACAGATTT
1 CAATTCCTTCACAGATTT
**
682676 CAATTGTTTCACAGATTT
1 CAATTCCTTCACAGATTT
682694 CAATTCCTTCACAGATTT
1 CAATTCCTTCACAGATTT
682712 CAATTCCTTCACAGATTT
1 CAATTCCTTCACAGATTT
*
682730 CAATTCCTTCCCAGATTT
1 CAATTCCTTCACAGATTT
682748 CAATTCC
1 CAATTCC
682755 CTCGTAAACA
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 93 1.00
ACGTcount: A:0.27, C:0.26, G:0.06, T:0.41
Consensus pattern (18 bp):
CAATTCCTTCACAGATTT
Found at i:683430 original size:43 final size:43
Alignment explanation
Indices: 683369--683456 Score: 158
Period size: 43 Copynumber: 2.0 Consensus size: 43
683359 GTTAATCCGA
*
683369 ATCATCCTACTATTCAATTTGAACTGATTCTAGTAGTATACGT
1 ATCATCCTACTATGCAATTTGAACTGATTCTAGTAGTATACGT
*
683412 ATCATCCTACTATGCAATTTGAACTGATTCTTGTAGTATACGT
1 ATCATCCTACTATGCAATTTGAACTGATTCTAGTAGTATACGT
683455 AT
1 AT
683457 AATATGTTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.40
Consensus pattern (43 bp):
ATCATCCTACTATGCAATTTGAACTGATTCTAGTAGTATACGT
Found at i:692971 original size:32 final size:32
Alignment explanation
Indices: 692917--692977 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
692907 CACTCCTTTC
* *
692917 ATCTATTACACAATACACTCCTTTCATCTTCA
1 ATCTATTACACAACACAATCCTTTCATCTTCA
*
692949 ATCTCTTACACAACACAATCCTTTCATCT
1 ATCTATTACACAACACAATCCTTTCATCT
692978 AACCAAATAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.31, C:0.33, G:0.00, T:0.36
Consensus pattern (32 bp):
ATCTATTACACAACACAATCCTTTCATCTTCA
Found at i:692977 original size:25 final size:25
Alignment explanation
Indices: 692892--692945 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
692882 ATCATCTTCA
*
692892 ATCTCTTACATAACACACTCCTTTC
1 ATCTCTTACACAACACACTCCTTTC
* *
692917 ATCTATTACACAATACACTCCTTTC
1 ATCTCTTACACAACACACTCCTTTC
692942 ATCT
1 ATCT
692946 TCAATCTCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.30, C:0.33, G:0.00, T:0.37
Consensus pattern (25 bp):
ATCTCTTACACAACACACTCCTTTC
Found at i:694743 original size:12 final size:13
Alignment explanation
Indices: 694728--694781 Score: 53
Period size: 12 Copynumber: 4.4 Consensus size: 13
694718 TTAAAATATA
694728 TATTATAT-TTAT
1 TATTATATATTAT
694740 TATTATATATTA-
1 TATTATATATTAT
* *
694752 TAGTATAT-TAAAT
1 TATTATATAT-TAT
694765 TATTAT-TATTAT
1 TATTATATATTAT
694777 TATTA
1 TATTA
694782 ATTAGTTTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
11 1 0.03
12 24 0.71
13 9 0.26
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (13 bp):
TATTATATATTAT
Found at i:695177 original size:24 final size:24
Alignment explanation
Indices: 695145--695222 Score: 156
Period size: 24 Copynumber: 3.2 Consensus size: 24
695135 GATAATAGGA
695145 GAGGAGGAGAACCATCAAGGATTC
1 GAGGAGGAGAACCATCAAGGATTC
695169 GAGGAGGAGAACCATCAAGGATTC
1 GAGGAGGAGAACCATCAAGGATTC
695193 GAGGAGGAGAACCATCAAGGATTC
1 GAGGAGGAGAACCATCAAGGATTC
695217 GAGGAG
1 GAGGAG
695223 AAAACGGATT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 54 1.00
ACGTcount: A:0.37, C:0.15, G:0.36, T:0.12
Consensus pattern (24 bp):
GAGGAGGAGAACCATCAAGGATTC
Found at i:706435 original size:20 final size:22
Alignment explanation
Indices: 706410--706458 Score: 66
Period size: 24 Copynumber: 2.2 Consensus size: 22
706400 TAATAAATAA
706410 AATAA-TTTTT-AAAAATTAAC
1 AATAATTTTTTAAAAAATTAAC
706430 AATAATTTTTTTAAAAAAATTAAC
1 AATAA-TTTTTT-AAAAAATTAAC
706454 AATAA
1 AATAA
706459 AAAATTGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.20
22 5 0.20
24 15 0.60
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (22 bp):
AATAATTTTTTAAAAAATTAAC
Found at i:717786 original size:38 final size:37
Alignment explanation
Indices: 717706--717786 Score: 85
Period size: 38 Copynumber: 2.2 Consensus size: 37
717696 AACAAGTTGG
* * *
717706 AAAATATTTATATGTTTTCTTTAAAAATTTAAATTCAT
1 AAAA-ATTTATATATTTTCTTTAAAAATTGAAAATCAT
*
717744 -AAAATTTATATATTTTTTATTATAAAATTGAAAAT-AT
1 AAAAATTTATATATTTTCT-TTA-AAAATTGAAAATCAT
717781 AAAAAT
1 AAAAAT
717787 GTTTAATGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
36 13 0.36
37 8 0.22
38 15 0.42
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.47
Consensus pattern (37 bp):
AAAAATTTATATATTTTCTTTAAAAATTGAAAATCAT
Found at i:720410 original size:6 final size:6
Alignment explanation
Indices: 720399--720426 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
720389 AGAAACGCCC
720399 ATGAAG ATGAAG ATGAAG ATGAAG ATGA
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGA
720427 TAAGAAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.32, T:0.18
Consensus pattern (6 bp):
ATGAAG
Found at i:726871 original size:19 final size:20
Alignment explanation
Indices: 726831--726872 Score: 68
Period size: 21 Copynumber: 2.1 Consensus size: 20
726821 ACTCCATCCG
726831 ATTCAATATTATAGTATAATT
1 ATTCAATATTATAG-ATAATT
726852 ATTCAATATTATAG-TAATT
1 ATTCAATATTATAGATAATT
726871 AT
1 AT
726873 AATAATATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 7 0.33
21 14 0.67
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.48
Consensus pattern (20 bp):
ATTCAATATTATAGATAATT
Found at i:730780 original size:2 final size:2
Alignment explanation
Indices: 730773--730801 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
730763 GAGATTATTC
730773 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
730802 TTTTATTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:731630 original size:232 final size:222
Alignment explanation
Indices: 731202--731658 Score: 677
Period size: 232 Copynumber: 2.0 Consensus size: 222
731192 TATTCAGGTT
*
731202 GGGTCGGGTGAAACTTTATTTTGGTCGGGTCGGTTTTTTTAAGTGTGATATTCGGGTCGGGTCGA
1 GGGTCGGGTGAAACTTTATTTTGGTCGGGTCGGTTTTTTTAAGTGTGATATTCGGGTC--G-AGA
* * *
731267 GTTCGGGTTTAGGGTGAAAAAGACCCGACCCGAATATATATATAATTTTACCTTATATATTTAGG
63 GTTAGGGTTTAGGGTGAAAAAGACCCGACCCGAAAAAATATATAATTTTACCTTATATATTTAGG
731332 AATAATTACAATAATACCCCTCTATATATAATTTTTTCAATTAAGTCACTGTTTTTATTGAATAA
128 AATAATTACAATAATACCCCTCTATATATAATTTTTTCAATTAAGT-ACTGTTTTTATTGAATAA
**
731397 AAATAATTTTTTTATTATTTTTGGTCGGGTC
192 AAATAATTTTTTTATTATTTCGGGTCGGGTC
731428 GGGTCGGGTGAAACTTTATTTTTGGTCGGGTCGGGTCGGTTTTTTTTAAGTGTGATATTCGGGTC
1 GGGTCGGGTGAAACTTTA--TTT--T--GGTCGGGTCGG-TTTTTTTAAGTGTGATATTCGGGTC
*
731493 -AG-GTTAGGGTTTAGGGTGAAAAATACCCGACCCGACCCAAAAAATATATAATTTTACCTTATA
59 GAGAGTTAGGGTTTAGGGTGAAAAAGACCCGACCCG----AAAAAATATATAATTTTACCTTATA
731556 TATTTAGGAATAATTACAATAATACCCCTCTATATATAATTTTTTTTCAATTAAGT-CTGTTTTT
120 TATTTAGGAATAATTACAATAATACCCCTCTATATATAA--TTTTTTCAATTAAGTACTGTTTTT
731620 ATTGAATAAAAATAATTTTTTTATTATTTCGGGTCGGGT
183 ATTGAATAAAAATAATTTTTTTATTATTTCGGGTCGGGT
731659 TTCTAATTCA
Statistics
Matches: 211, Mismatches: 7, Indels: 20
0.89 0.03 0.08
Matches are distributed among these distances:
226 18 0.09
228 33 0.16
229 1 0.00
230 1 0.00
232 118 0.56
233 25 0.12
234 15 0.07
ACGTcount: A:0.28, C:0.12, G:0.20, T:0.40
Consensus pattern (222 bp):
GGGTCGGGTGAAACTTTATTTTGGTCGGGTCGGTTTTTTTAAGTGTGATATTCGGGTCGAGAGTT
AGGGTTTAGGGTGAAAAAGACCCGACCCGAAAAAATATATAATTTTACCTTATATATTTAGGAAT
AATTACAATAATACCCCTCTATATATAATTTTTTCAATTAAGTACTGTTTTTATTGAATAAAAAT
AATTTTTTTATTATTTCGGGTCGGGTC
Found at i:746365 original size:12 final size:12
Alignment explanation
Indices: 746348--746384 Score: 67
Period size: 12 Copynumber: 3.2 Consensus size: 12
746338 TTATAACGGT
746348 AAAAATTAATAA
1 AAAAATTAATAA
746360 AAAAATTAAT-A
1 AAAAATTAATAA
746371 AAAAATTAATAA
1 AAAAATTAATAA
746383 AA
1 AA
746385 TAATAAATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 11 0.46
12 13 0.54
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
AAAAATTAATAA
Found at i:746373 original size:11 final size:11
Alignment explanation
Indices: 746348--746384 Score: 65
Period size: 11 Copynumber: 3.3 Consensus size: 11
746338 TTATAACGGT
746348 AAAAATTAATAA
1 AAAAATTAAT-A
746360 AAAAATTAATA
1 AAAAATTAATA
746371 AAAAATTAATA
1 AAAAATTAATA
746382 AAA
1 AAA
746385 TAATAAATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 15 0.60
12 10 0.40
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (11 bp):
AAAAATTAATA
Found at i:746397 original size:19 final size:20
Alignment explanation
Indices: 746350--746399 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
746340 ATAACGGTAA
* *
746350 AAATTAATAAAAAAATTAAT
1 AAATTATTAATAAAATTAAT
**
746370 AAAAAATTAATAAAA-TAAT
1 AAATTATTAATAAAATTAAT
746389 AAATTATTAAT
1 AAATTATTAAT
746400 TTATTATAAT
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
19 13 0.54
20 11 0.46
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (20 bp):
AAATTATTAATAAAATTAAT
Found at i:746400 original size:23 final size:23
Alignment explanation
Indices: 746348--746392 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
746338 TTATAACGGT
*
746348 AAAAATTAATAAAAAAATTAATA
1 AAAAATTAATAAAAAAATAAATA
*
746371 AAAAATTAATAAAATAATAAAT
1 AAAAATTAATAAAAAAATAAAT
746393 TATTAATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (23 bp):
AAAAATTAATAAAAAAATAAATA
Found at i:747426 original size:20 final size:20
Alignment explanation
Indices: 747401--747444 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
747391 TTGGTTCACG
747401 GAATGTAAGATTACCAGTAA
1 GAATGTAAGATTACCAGTAA
* *
747421 GAATGTAAGATTATCAGTGA
1 GAATGTAAGATTACCAGTAA
747441 GAAT
1 GAAT
747445 AGGATTGCTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.43, C:0.07, G:0.23, T:0.27
Consensus pattern (20 bp):
GAATGTAAGATTACCAGTAA
Found at i:748292 original size:641 final size:640
Alignment explanation
Indices: 747390--748624 Score: 1665
Period size: 641 Copynumber: 1.9 Consensus size: 640
747380 TTAAGATGTA
** * *
747390 TTTGGTTCACGGAATGTAAGATTACCAGTAAGAATGTAAGATTATCAGTGAGAATAGGATTGCTG
1 TTTGGTTCACGGAATGTAAGATTACCAGTAAGAATAAAAGATTACCAG-GAGAATAGGATTACTG
*
747455 AGAATGTTATATTTTGTGTTTGATTGGTTTAGTAGAAATGTAAGATTACCGTGTTTGGTTAAAGG
65 AGAATGTTATATTTTGTGTTTGATTGGTTCAG-AGAAATGTAAGATTACCGTGTTTGGTTAAAGG
* *
747520 AATAAAAGATTATTGGAATGTATATTTGACCAAATTGTCCTTATTATATAATTGTTTTTTAACAA
129 AATAAAAGATTATTGAAATGTATATTTGACCAAATTGTCCTTATTATATAATTGTTTATTAACAA
*
747585 GTTGAAAAATATTTATATATTTTCTTTAAAAAAATTAAATTCATAAAATATATATATATATTTTA
194 ATTGAAAAATATTTATATATTTTCTTTAAAAAAATTAAATTCATAAAATATATATATATATTTTA
***
747650 CAAAATTAAAAATAT-AAAAAGGTTTAATAAAAAAGTAAAATTTTATTTTAACCCCTAAACTTCA
259 CAAAATTAAAAATATAAAAAAGGTTTAATAAAAAAGTAAAA-AAAATTTTAACCCCTAAACTTCA
*
747714 TATAAAATTTTAATTAT-A-CTTTTTGTAAATC-T-A-AAGCATAAATTTGTAATTTAACATTCG
323 TATAAAATTTTAATTATAATCTTTTTGTAAATCATAATAAGCATAAATTTGTAAGTTAACATTCG
* * * * * *
747774 TAGTATTTTTATTATTTAATGACAGAAGAAATATATTTTTGAACAAAAAATTAAGGGCATTTTAG
388 TAGAATTTTTATTATTCAATGACAGAAGAAATATATTTTTGAAAAAAAAATGAA---AATTTAAG
* * *
747839 TCCAAAACGTCGTTAATCTAACAATACCTAA-TGAATGGGAGGTAATGACATTCTCGGTAATATA
450 GCC---ACGTCG-TAATCTAACAATACCTAAGGGAA-GGGAGGTAATGACATTCCCGGTAATATA
747903 C-CCAAAAAAATCTACTATTGGTAATAAAACATTACCGGGAATGAGATTCCCGACCAACCAAACA
510 CTCC-AAAAAATCTACTATTGGTAATAAAACATTACCGGGAATGAGATTCCCGACCAACCAAACA
*
747967 TGGTAATGTGAATTTTATTTCCATGAAAATCTCACATTCCTTGAACCAAACATGCCCTTAGGGTG
574 TGGGAATGTGAATTTTATTTCCATGAAAATCTCACATTCCTTGAACCAAACATGCCCTTAGGGTG
748032 CG
639 CG
* *
748034 TTTGGTTCACGGAATGTAAGATTACCAGT-GGAAATAAAAGATTACCA-GAGAATAGGATTATTG
1 TTTGGTTCACGGAATGTAAGATTACCAGTAAG-AATAAAAGATTACCAGGAGAATAGGATTACTG
* *
748097 AGAATGTTGTATTTTGTGTTTGGTTGGTTCACG-G-AATGTAAGATTACCGTGTTTGGTTAAAAG
65 AGAATGTTATATTTTGTGTTTGATTGGTTCA-GAGAAATGTAAGATTACCGTGTTTGGTT-AAAG
* *
748160 TAATAAAAGATTATTGAAATGTATATTTGACCAAATTGTCCTTATTATATATTTGTATAATATT-
128 GAATAAAAGATTATTGAAATGTATATTTGACCAAATTGTCCTTATTATATAATTGT-T--TATTA
* * * *
748224 ACAAATTG-TAAATATTTATATATTTTCTTT-AAAAAATTAAATTCATAATATTTATATA-ATTT
190 ACAAATTGAAAAATATTTATATATTTTCTTTAAAAAAATTAAATTCATAAAATATATATATA-TA
* * ** *
748286 TTTTACAAAATTAAAAATATAAAAAATGTTTAATGAAAGGGTAAAAAAAATTTTAACCCCTGAAC
254 TTTTACAAAATTAAAAATATAAAAAAGGTTTAATAAAAAAGTAAAAAAAATTTTAACCCCTAAAC
* *
748351 TTCATATAAAATTTTAATTATAGATTTTTTTTTGTAAATCTAAAATAATTTAAGGATAAATTTGT
319 TTCATATAAAATTTTAATTATA-A--TCTTTTTGTAAATC----ATAA--TAAGCATAAATTTGT
* *
748416 AAGTTAACCTTCGTAGAATTTTTATTATTCAATGACAGAAGAAGTATATTTTTGAAAAAAAAATG
375 AAGTTAACATTCGTAGAATTTTTATTATTCAATGACAGAAGAAATATATTTTTGAAAAAAAAATG
* ** * * **
748481 AAAATTTAAGGGCATTTTGTAATGTTGCAATACCTAAGGGAAGGGAGGTAATGACATTCCCGGTA
440 AAAATTTAAGGCCACGTCGTAATCTAACAATACCTAAGGGAAGGGAGGTAATGACATTCCCGGTA
*
748546 ATATACTCCAAAAAATCTACTATTGGTAATAAAATATTACCGGGAATGAGATTCCCGACCAACCA
505 ATATACTCCAAAAAATCTACTATTGGTAATAAAACATTACCGGGAATGAGATTCCCGACCAACCA
748611 AACATGGGAATGTG
570 AACATGGGAATGTG
748625 GGATTCCATC
Statistics
Matches: 518, Mismatches: 49, Indels: 44
0.85 0.08 0.07
Matches are distributed among these distances:
640 25 0.05
641 141 0.27
642 85 0.16
643 10 0.02
644 44 0.08
646 12 0.02
648 111 0.21
649 8 0.02
651 1 0.00
652 8 0.02
655 73 0.14
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (640 bp):
TTTGGTTCACGGAATGTAAGATTACCAGTAAGAATAAAAGATTACCAGGAGAATAGGATTACTGA
GAATGTTATATTTTGTGTTTGATTGGTTCAGAGAAATGTAAGATTACCGTGTTTGGTTAAAGGAA
TAAAAGATTATTGAAATGTATATTTGACCAAATTGTCCTTATTATATAATTGTTTATTAACAAAT
TGAAAAATATTTATATATTTTCTTTAAAAAAATTAAATTCATAAAATATATATATATATTTTACA
AAATTAAAAATATAAAAAAGGTTTAATAAAAAAGTAAAAAAAATTTTAACCCCTAAACTTCATAT
AAAATTTTAATTATAATCTTTTTGTAAATCATAATAAGCATAAATTTGTAAGTTAACATTCGTAG
AATTTTTATTATTCAATGACAGAAGAAATATATTTTTGAAAAAAAAATGAAAATTTAAGGCCACG
TCGTAATCTAACAATACCTAAGGGAAGGGAGGTAATGACATTCCCGGTAATATACTCCAAAAAAT
CTACTATTGGTAATAAAACATTACCGGGAATGAGATTCCCGACCAACCAAACATGGGAATGTGAA
TTTTATTTCCATGAAAATCTCACATTCCTTGAACCAAACATGCCCTTAGGGTGCG
Found at i:748970 original size:34 final size:31
Alignment explanation
Indices: 748890--748978 Score: 88
Period size: 34 Copynumber: 2.7 Consensus size: 31
748880 GTTAGTATTT
* * *
748890 TTTAAATAGTTATTATATTTTATATTAATATA
1 TTTATATAATTATTAT-TTTTTTATTAATATA
* *
748922 TTTATGTAAATATTATTTTTTTATTAAAATAATA
1 TTTATATAATTATTATTTTTTTATT--AAT-ATA
*
748956 TTTATATAATTATTATTTATTTA
1 TTTATATAATTATTATTTTTTTA
748979 GAATTATTAA
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
31 8 0.17
32 12 0.26
33 3 0.07
34 23 0.50
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.58
Consensus pattern (31 bp):
TTTATATAATTATTATTTTTTTATTAATATA
Found at i:750783 original size:21 final size:21
Alignment explanation
Indices: 750757--750847 Score: 130
Period size: 21 Copynumber: 4.3 Consensus size: 21
750747 GCCATCTCCG
750757 CAGGGTTACATTCCGAGCCCT
1 CAGGGTTACATTCCGAGCCCT
*
750778 CAGGGTTACATTCCAAGCCCGT
1 CAGGGTTACATTCCGAGCCC-T
*
750800 -AGGGTTACATTCCGAGCCCA
1 CAGGGTTACATTCCGAGCCCT
* *
750820 CAGTGTTACATTCCGAGCCCG
1 CAGGGTTACATTCCGAGCCCT
750841 CAGGGTT
1 CAGGGTT
750848 TTATACCATA
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
21 61 0.98
22 1 0.02
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (21 bp):
CAGGGTTACATTCCGAGCCCT
Found at i:750805 original size:42 final size:42
Alignment explanation
Indices: 750754--750847 Score: 152
Period size: 42 Copynumber: 2.2 Consensus size: 42
750744 TATGCCATCT
*
750754 CCGCAGGGTTACATTCCGAGCCCTCAGGGTTACATTCCAAGC
1 CCGCAGGGTTACATTCCGAGCCCACAGGGTTACATTCCAAGC
* * *
750796 CCGTAGGGTTACATTCCGAGCCCACAGTGTTACATTCCGAGC
1 CCGCAGGGTTACATTCCGAGCCCACAGGGTTACATTCCAAGC
750838 CCGCAGGGTT
1 CCGCAGGGTT
750848 TTATACCATA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.20, C:0.32, G:0.26, T:0.22
Consensus pattern (42 bp):
CCGCAGGGTTACATTCCGAGCCCACAGGGTTACATTCCAAGC
Found at i:751414 original size:40 final size:40
Alignment explanation
Indices: 751370--751454 Score: 116
Period size: 40 Copynumber: 2.1 Consensus size: 40
751360 AAATGTTTTT
* * * *
751370 AAAATACAAATTATATTATTCAAAATTTAAATTTTAAATA
1 AAAATAAAAATAATATTATTCAAAATTTAAAATTAAAATA
*
751410 AAAATAAAAATAATATTATTCGAAATTTAAAATTAAAATA
1 AAAATAAAAATAATATTATTCAAAATTTAAAATTAAAATA
*
751450 TAAAT
1 AAAAT
751455 TATAGTATTC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.59, C:0.04, G:0.01, T:0.36
Consensus pattern (40 bp):
AAAATAAAAATAATATTATTCAAAATTTAAAATTAAAATA
Found at i:751436 original size:34 final size:34
Alignment explanation
Indices: 751398--751473 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 34
751388 TTCAAAATTT
* * *
751398 AAATTTTAAATAAAAATAAAAATAATATTATTCG
1 AAATTTAAAATAAAAATAAAAATAATAGTATTCA
* * *
751432 AAATTTAAAATTAAAATATAAATTATAGTATTCA
1 AAATTTAAAATAAAAATAAAAATAATAGTATTCA
751466 AAATTTAA
1 AAATTTAA
751474 CATTAAATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.37
Consensus pattern (34 bp):
AAATTTAAAATAAAAATAAAAATAATAGTATTCA
Found at i:751480 original size:40 final size:39
Alignment explanation
Indices: 751368--751480 Score: 110
Period size: 40 Copynumber: 3.0 Consensus size: 39
751358 ATAAATGTTT
* *
751368 TTAAAATACAAATTATATTATTCAAAATTTAAATTTTAAA
1 TTAAAATAAAAATTATATTATTCAAAATTTAAA-TTAAAA
* * *
751408 TAAAAATAAAAATAATATTATTCGAAA--T---TTAAAA
1 TTAAAATAAAAATTATATTATTCAAAATTTAAATTAAAA
* *
751442 TTAAAATATAAATTATAGTATTCAAAATTTAACATTAAA
1 TTAAAATAAAAATTATATTATTCAAAATTTAA-ATTAAA
751481 TTTCAACTTA
Statistics
Matches: 57, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
34 27 0.47
36 1 0.02
38 1 0.02
40 28 0.49
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (39 bp):
TTAAAATAAAAATTATATTATTCAAAATTTAAATTAAAA
Found at i:752114 original size:128 final size:128
Alignment explanation
Indices: 751876--752481 Score: 1052
Period size: 128 Copynumber: 4.7 Consensus size: 128
751866 ACAATCCATC
*
751876 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATAATAACATATTCTCTGACAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
* * * *
751941 AGAAGGCGCGCCCCCGGGAATGCGTCTTCAAGTCCACTGAGAAATAATAGGTACTGATATGAA
66 GGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTACTGATATGAA
752004 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
* * *
752069 GGAAGGCGCGCCCCCGGGAACGCGCCTTCAAATCCCCTGAAAAATAATAGGTAGTGATATGAA
66 GGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTACTGATATGAA
*
752132 TAGTGTCCCCGAGAGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
*
752197 AGAAGGCGC-CCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTACTGATATGAA
66 GGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTACTGATATGAA
752259 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
* **
752324 GGAAGACGCATCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTACTGATATGAA
66 GGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTACTGATATGAA
* *
752387 TAGTGTCCCTGAGGGACATGAGTGGCATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
* *
752452 GGAATGCGCGCCCCCGGGAACGTGCCTTCA
66 GGAAGGCGCGCCCCCGGGAACGCGCCTTCA
752482 TGTGAATAGT
Statistics
Matches: 453, Mismatches: 24, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
127 121 0.27
128 332 0.73
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (128 bp):
TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
GGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTACTGATATGAA
Found at i:752328 original size:255 final size:256
Alignment explanation
Indices: 751876--752481 Score: 1061
Period size: 255 Copynumber: 2.4 Consensus size: 256
751866 ACAATCCATC
*
751876 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATAATAACATATTCTCTGACAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
* *
751941 AGAAGGCGCGCCCCCGGGAATGCGTCTTCAAGTCCACTGAGAAATAATAGGTACTGATATGAATA
66 AGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTCCACTGAGAAATAATAGGTACTGATATGAATA
752006 GTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAATGG
131 GTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAATGG
* * *
752071 AAGGCGCGCCCCCGGGAACGCGCCTTCAAATCCCCTGAAAAATAATAGGTAGTGATATGAA
196 AAGACGCACCCCCGGGAACGCGCCTTCAAATCCCCTGAAAAATAATAGGTACTGATATGAA
*
752132 TAGTGTCCCCGAGAGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
*
752197 AGAAGGCGC-CCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTACTGATATGAATA
66 AGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTCCACTGAGAAATAATAGGTACTGATATGAATA
752261 GTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAATGG
131 GTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAATGG
* * *
752326 AAGACGCATCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTACTGATATGAA
196 AAGACGCACCCCCGGGAACGCGCCTTCAAATCCCCTGAAAAATAATAGGTACTGATATGAA
* *
752387 TAGTGTCCCTGAGGGACATGAGTGGCATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
* * *
752452 GGAATGCGCGCCCCCGGGAACGTGCCTTCA
66 AGAAGGCGCGCCCCCGGGAACGCGCCTTCA
752482 TGTGAATAGT
Statistics
Matches: 332, Mismatches: 17, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
255 241 0.73
256 91 0.27
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (256 bp):
TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
AGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTCCACTGAGAAATAATAGGTACTGATATGAATA
GTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAATGG
AAGACGCACCCCCGGGAACGCGCCTTCAAATCCCCTGAAAAATAATAGGTACTGATATGAA
Found at i:752575 original size:8 final size:8
Alignment explanation
Indices: 752562--752602 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
752552 TCACAATCTT
752562 TCAAATTC
1 TCAAATTC
752570 TCAAATTC
1 TCAAATTC
* *
752578 CCAAACTC
1 TCAAATTC
752586 T-AAATTC
1 TCAAATTC
752593 TCAAATTC
1 TCAAATTC
752601 TC
1 TC
752603 TGAAAATGAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.37, C:0.29, G:0.00, T:0.34
Consensus pattern (8 bp):
TCAAATTC
Found at i:761104 original size:11 final size:11
Alignment explanation
Indices: 761088--761112 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
761078 ACATAATTTT
761088 TTTTTAAATAA
1 TTTTTAAATAA
761099 TTTTTAAATAA
1 TTTTTAAATAA
761110 TTT
1 TTT
761113 AAAAATATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TTTTTAAATAA
Found at i:767240 original size:23 final size:23
Alignment explanation
Indices: 767214--767283 Score: 131
Period size: 23 Copynumber: 3.0 Consensus size: 23
767204 ATTAAATAGT
*
767214 AGGATTATTTTAATGATATTTGA
1 AGGATTATTTTAATGAAATTTGA
767237 AGGATTATTTTAATGAAATTTGA
1 AGGATTATTTTAATGAAATTTGA
767260 AGGATTATTTTAATGAAATTTGA
1 AGGATTATTTTAATGAAATTTGA
767283 A
1 A
767284 TCTTGATCAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.39, C:0.00, G:0.17, T:0.44
Consensus pattern (23 bp):
AGGATTATTTTAATGAAATTTGA
Found at i:767497 original size:25 final size:25
Alignment explanation
Indices: 767415--767500 Score: 66
Period size: 27 Copynumber: 3.3 Consensus size: 25
767405 ATAATTTGAT
*
767415 AATTTATGAATAAAGAGTGAATTTA
1 AATTTATGAATAAAAAGTGAATTTA
*** * *
767440 AATTTATATGTAATTTTAA-TTATTATTA
1 AA-TT-TATG-AATAAAAAGTGAAT-TTA
767468 TAATTTATGAATAAAAAGTGAATTTA
1 -AATTTATGAATAAAAAGTGAATTTA
767494 AATTTAT
1 AATTTAT
767501 ATGTAATTTT
Statistics
Matches: 44, Mismatches: 11, Indels: 12
0.66 0.16 0.18
Matches are distributed among these distances:
25 9 0.20
26 10 0.23
27 14 0.32
28 9 0.20
29 2 0.05
ACGTcount: A:0.45, C:0.00, G:0.09, T:0.45
Consensus pattern (25 bp):
AATTTATGAATAAAAAGTGAATTTA
Found at i:768924 original size:25 final size:26
Alignment explanation
Indices: 768896--768951 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 26
768886 ATAAAGAGAT
768896 TTAATTAAAAT-AA-TATTTGAATCTA
1 TTAATTAAAATAAATTATTT-AATCTA
*
768921 TTAATTAAACTAAATTATTTAATCTA
1 TTAATTAAAATAAATTATTTAATCTA
768947 -TAATT
1 TTAATT
768952 TAGAGTGTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 15 0.54
26 8 0.29
27 5 0.18
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.46
Consensus pattern (26 bp):
TTAATTAAAATAAATTATTTAATCTA
Found at i:769231 original size:2 final size:2
Alignment explanation
Indices: 769224--769263 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
769214 TTATTATTGA
769224 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
769264 TTTTTGTTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:769353 original size:3 final size:3
Alignment explanation
Indices: 769347--769406 Score: 70
Period size: 3 Copynumber: 20.0 Consensus size: 3
769337 ACCCATTTTT
769347 TTA TTA TTGA -TA TTA TTA TTA TTA TT- TTA TTTA TTA TTA TTA TTA
1 TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA
**
769392 TTA AAA TTA TTA TTA
1 TTA TTA TTA TTA TTA
769407 CAAACAAGCC
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
2 3 0.06
3 42 0.86
4 4 0.08
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:770996 original size:119 final size:117
Alignment explanation
Indices: 770849--771085 Score: 300
Period size: 120 Copynumber: 2.0 Consensus size: 117
770839 ATTTTAATCC
* * * * *
770849 TGTTTTAATATTTATTTATTTTTCAATAT-TAAG-AAATGGCAGTCTTAAAACA-ACTGGATGTC
1 TGTTTTAATAATTATTTATTTTTCAATATCGAAGAAAATAGCAGTCTTAAAACACA-TAGAAGT-
*
770911 CATTTTCTGATATTTTTAAATAAATAAATATCCTATTTTATAAATTATATATTAAT
64 CATTTTCTGATATTTTTAAATAAATAAATATCCTA-TTTATAAATT-TATATAAAT
* * **
770967 TGTTTTAATTAATTATTTATTTTTTAATATCGAAGAAAATAGCTGTCTTAAGGCACATAGAAGTC
1 TGTTTTAA-TAATTATTTATTTTTCAATATCGAAGAAAATAGCAGTCTTAAAACACATAGAAGTC
**
771032 ATTTTCTGATATTTTTAAATAAATAAATATTTTATTTATAAATTTATATAAAT
65 ATTTTCTGATATTTTTAAATAAATAAATATCCTATTTATAAATTTATATAAAT
771085 T
1 T
771086 AATAAATTTA
Statistics
Matches: 103, Mismatches: 12, Indels: 8
0.84 0.10 0.07
Matches are distributed among these distances:
118 17 0.17
119 29 0.28
120 36 0.35
121 20 0.19
122 1 0.01
ACGTcount: A:0.38, C:0.07, G:0.08, T:0.47
Consensus pattern (117 bp):
TGTTTTAATAATTATTTATTTTTCAATATCGAAGAAAATAGCAGTCTTAAAACACATAGAAGTCA
TTTTCTGATATTTTTAAATAAATAAATATCCTATTTATAAATTTATATAAAT
Found at i:775248 original size:23 final size:24
Alignment explanation
Indices: 775217--775266 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 24
775207 CTCATCCAAC
*
775217 AAAGAAAGAAGAAGAAA-AAAAACA
1 AAAGAAAGAA-AAAAAACAAAAACA
*
775241 AAAG-AAGAAAAAAAACAAAAATA
1 AAAGAAAGAAAAAAAACAAAAACA
775264 AAA
1 AAA
775267 AAAAACAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 5 0.22
23 14 0.61
24 4 0.17
ACGTcount: A:0.82, C:0.04, G:0.12, T:0.02
Consensus pattern (24 bp):
AAAGAAAGAAAAAAAACAAAAACA
Found at i:775253 original size:16 final size:16
Alignment explanation
Indices: 775228--775286 Score: 84
Period size: 16 Copynumber: 3.6 Consensus size: 16
775218 AAGAAAGAAG
775228 AAGAAAAAAAACAAAA
1 AAGAAAAAAAACAAAA
775244 GAAGAAAAAAAACAAAA
1 -AAGAAAAAAAACAAAA
775261 ATA-AAAAAAAACAAAA
1 A-AGAAAAAAAACAAAA
*
775277 AGGAAAAAAA
1 AAGAAAAAAA
775287 GAAGAAGGAA
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
16 22 0.56
17 17 0.44
ACGTcount: A:0.85, C:0.05, G:0.08, T:0.02
Consensus pattern (16 bp):
AAGAAAAAAAACAAAA
Found at i:777763 original size:114 final size:114
Alignment explanation
Indices: 777562--777785 Score: 385
Period size: 114 Copynumber: 2.0 Consensus size: 114
777552 GTGCCACGTT
777562 CTCATAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
1 CTCATAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
* * * *
777627 GTTTGGTATGAACCCTAAAACCAATCATTAGATTTGAAAGATGAATTTG
66 GTTCGGTAGGAACCCCAAAACCAATCATTAGAATTGAAAGATGAATTTG
777676 CTCATAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
1 CTCATAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
* * *
777741 GTTCGGTAGGAGCCCCAGAACCAATCATTGGAATTGAAAGATGAA
66 GTTCGGTAGGAACCCCAAAACCAATCATTAGAATTGAAAGATGAA
777786 CTACATGATC
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
114 103 1.00
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (114 bp):
CTCATAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
GTTCGGTAGGAACCCCAAAACCAATCATTAGAATTGAAAGATGAATTTG
Found at i:779347 original size:226 final size:226
Alignment explanation
Indices: 778953--779816 Score: 1329
Period size: 226 Copynumber: 3.8 Consensus size: 226
778943 TTCCAGAAGG
* *
778953 GTTCATAATGAGAAGAACTCATATGAAGAAGGAAGAAGAAATTCATAATGAGAAGAGCTTGCTCA
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAGCTTGTTCA
*
779018 ACCTTTTGCTCAAATCCATCACTCGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAA
66 ACCTTTTGCTCAAATCCATCACTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAA
*
779083 CTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTATTCAACCTTTTGTTTGAATTC
131 CTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTC
* *
779148 ATCATTTAATGGATCAACATTGCCGGGTAGA
196 ATCATTTGATGGATCAACATTGCCGAGTAGA
* *
779179 GTTCATAATGAGAAGAACTCTTCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCA
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAGCTTGTTCA
**
779244 ACCTTTTGCTCAAATCCATCACTCGATGGATCAGTTTTTCCAGAGAAAGTTCATAATGAGAAGAA
66 ACCTTTTGCTCAAATCCATCACTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAA
* * ** *
779309 CTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGTTTGTTCAACCTTTTGCTCAAATCC
131 CTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTC
* * * * *
779374 ATCACTTGATGGATCAGCTTTTCCAGAG-AAA
196 ATCATTTGATGGATCAACATTGCC-GAGTAGA
*
779405 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCA
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAGCTTGTTCA
* *
779470 ACCTTTTGCTCAAATCCATCACTCGATGGATCAACTTTTCCAAAGATAGTTCATAATGAGAAGAA
66 ACCTTTTGCTCAAATCCATCACTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAA
*
779535 CTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACTTTTTGTTTGAATTC
131 CTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTC
779600 ATCATTTGATGGATCAACATTGCC-ATGTAGA
196 ATCATTTGATGGATCAACATTGCCGA-GTAGA
* * * **
779631 GTTCATAATGAGAAGAACTCGTCTAAAGAAGGAAGAAAAAATTCATAATGAGAAGAATTTGTTCA
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAGCTTGTTCA
* ** *
779696 A-CTTTTAGTTTGAATTCATCACTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGA
66 ACCTTTT-GCTCAAATCCATCACTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGA
* * * ** *
779760 ACTCATCTGAAGAATGAAGAAGAAGTTCATAATAAAAAGAGCTTGTTCGACCTTTTG
130 ACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
779817 CATGACTCTA
Statistics
Matches: 581, Mismatches: 53, Indels: 8
0.90 0.08 0.01
Matches are distributed among these distances:
224 1 0.00
225 6 0.01
226 572 0.98
227 2 0.00
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (226 bp):
GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAGCTTGTTCA
ACCTTTTGCTCAAATCCATCACTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAA
CTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTC
ATCATTTGATGGATCAACATTGCCGAGTAGA
Found at i:779830 original size:113 final size:113
Alignment explanation
Indices: 778953--779817 Score: 1207
Period size: 113 Copynumber: 7.7 Consensus size: 113
778943 TTCCAGAAGG
* * *
778953 GTTCATAATGAGAAGAACTCATATGAAGAAGGAAGAAGAAATTCATAATGAGAAGAGCTTGCTCA
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCA
*
779018 ACCTTTTGCTCAAATCCATCACTCGATGGATCAGCTTTTCCAGAGAAA
66 ACCTTTTGCTCAAATCCATCACTCGATGGATCAACTTTTCCAGAGAAA
** *
779066 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTATTCA
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCA
* ** * * ** * * * *
779131 ACCTTTTGTTTGAATTCATCATTTAATGGATCAACATTGCC-GGGTAGA
66 ACCTTTTGCTCAAATCCATCACTCGATGGATCAACTTTTCCAGAG-AAA
*
779179 GTTCATAATGAGAAGAACTCTTCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCA
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCA
**
779244 ACCTTTTGCTCAAATCCATCACTCGATGGATCAGTTTTTCCAGAGAAA
66 ACCTTTTGCTCAAATCCATCACTCGATGGATCAACTTTTCCAGAGAAA
*
779292 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGTTTGTTCA
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCA
* *
779357 ACCTTTTGCTCAAATCCATCACTTGATGGATCAGCTTTTCCAGAGAAA
66 ACCTTTTGCTCAAATCCATCACTCGATGGATCAACTTTTCCAGAGAAA
779405 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCA
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCA
* *
779470 ACCTTTTGCTCAAATCCATCACTCGATGGATCAACTTTTCCAAAGATA
66 ACCTTTTGCTCAAATCCATCACTCGATGGATCAACTTTTCCAGAGAAA
**
779518 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCA
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCA
* * ** * * * * *
779583 ACTTTTTGTTTGAATTCATCATTTGATGGATCAACATTGCCATGTAG--A
66 ACCTTTTGCTCAAATCCATCACTCGATGGATCAACTTTTCCA-G-AGAAA
* * * * **
779631 GTTCATAATGAGAAGAACTCGTCTAAAGAAGGAAGAAAAAATTCATAATGAGAAGAATTTGTTCA
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCA
* ** *
779696 A-CTTTTAGTTTGAATTCATCACTCGATGGATCAACTTTTCCAGAGAAA
66 ACCTTTT-GCTCAAATCCATCACTCGATGGATCAACTTTTCCAGAGAAA
* * * *
779744 GTTCATAATGAGAAGAACTCATCTGAAGAATGAAGAAGAAGTTCATAATAAAAAGAGCTTGTTCG
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCA
779809 ACCTTTTGC
66 ACCTTTTGC
779818 ATGACTCTAT
Statistics
Matches: 668, Mismatches: 76, Indels: 16
0.88 0.10 0.02
Matches are distributed among these distances:
111 2 0.00
112 7 0.01
113 650 0.97
114 7 0.01
115 2 0.00
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (113 bp):
GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCA
ACCTTTTGCTCAAATCCATCACTCGATGGATCAACTTTTCCAGAGAAA
Found at i:780163 original size:3 final size:3
Alignment explanation
Indices: 780157--780216 Score: 70
Period size: 3 Copynumber: 20.0 Consensus size: 3
780147 CCCATTTTTT
780157 TTA TTA TTGA -TA TTA TTA TTA TTA TT- TTA TTTA TTA TTA TTA TTA
1 TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA
**
780202 TTA AAA TTA TTA TTA
1 TTA TTA TTA TTA TTA
780217 CAAACAGGCC
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
2 3 0.06
3 42 0.86
4 4 0.08
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:781808 original size:20 final size:19
Alignment explanation
Indices: 781783--781824 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
781773 CTATTTTATA
781783 AATTATATATTAATTGTTTT
1 AATTATATATTAATT-TTTT
* *
781803 AATTATTTATTTATTTTTT
1 AATTATATATTAATTTTTT
781822 AAT
1 AAT
781825 ATCGAAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
AATTATATATTAATTTTTT
Found at i:781820 original size:119 final size:117
Alignment explanation
Indices: 781679--781915 Score: 300
Period size: 120 Copynumber: 2.0 Consensus size: 117
781669 ATTTTAATCC
* * * *
781679 TGTTTTAATATTTATTTATTTTTCAATAT-TAAG-AAAGGGC-AGTCTTAAAACAACTGGATGTC
1 TGTTTTAATATTTATTTATTTTTCAATATCGAAGAAAAGAGCTA-TCTTAAAACAACTAGAAGT-
*
781741 CATTTTCTGATATTTTTAAATAAATAAATATCCTATTTTATAAATTATATATTAAT
64 CATTTTCTGATATTTTTAAATAAATAAATATCCTA-TTTATAAATT-TATATAAAT
* * ** *
781797 TGTTTTAATTATTTATTTATTTTTTAATATCGAAGAAAATAGCTATCTTAAGGCACCTAGAAGTC
1 TGTTTTAA-TATTTATTTATTTTTCAATATCGAAGAAAAGAGCTATCTTAAAACAACTAGAAGTC
**
781862 ATTTTCTGATATTTTTAAATAAATAAATATTTTATTTATAAATTTATATAAAT
65 ATTTTCTGATATTTTTAAATAAATAAATATCCTATTTATAAATTTATATAAAT
781915 T
1 T
781916 AATAAATTTA
Statistics
Matches: 103, Mismatches: 12, Indels: 8
0.84 0.10 0.07
Matches are distributed among these distances:
118 17 0.17
119 30 0.29
120 36 0.35
121 19 0.18
122 1 0.01
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.47
Consensus pattern (117 bp):
TGTTTTAATATTTATTTATTTTTCAATATCGAAGAAAAGAGCTATCTTAAAACAACTAGAAGTCA
TTTTCTGATATTTTTAAATAAATAAATATCCTATTTATAAATTTATATAAAT
Found at i:782929 original size:18 final size:17
Alignment explanation
Indices: 782906--782939 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
782896 ATTTAAATTA
*
782906 TAATTATTATTGTATTTT
1 TAATTA-TATTATATTTT
782924 TAATTATATTATATTT
1 TAATTATATTATATTT
782940 ATTATAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (17 bp):
TAATTATATTATATTTT
Found at i:782947 original size:20 final size:19
Alignment explanation
Indices: 782902--782952 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 19
782892 AGAGATTTAA
*
782902 ATTATAATTATTATTGTATT
1 ATTATAATTA-TATTATATT
782922 -TT-TAATTATATTATATTT
1 ATTATAATTATATTATA-TT
*
782940 ATTATAATAATAT
1 ATTATAATTATAT
782953 AATAAAAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
17 6 0.23
18 8 0.31
19 4 0.15
20 8 0.31
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (19 bp):
ATTATAATTATATTATATT
Found at i:783781 original size:7 final size:7
Alignment explanation
Indices: 783769--783812 Score: 70
Period size: 7 Copynumber: 6.3 Consensus size: 7
783759 TTATCAAAAA
783769 TAGGGTT
1 TAGGGTT
783776 TAGGGTT
1 TAGGGTT
* *
783783 TATGATT
1 TAGGGTT
783790 TAGGGTT
1 TAGGGTT
783797 TAGGGTT
1 TAGGGTT
783804 TAGGGTT
1 TAGGGTT
783811 TA
1 TA
783813 CAAAAACAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.18, C:0.00, G:0.36, T:0.45
Consensus pattern (7 bp):
TAGGGTT
Found at i:786802 original size:439 final size:439
Alignment explanation
Indices: 785984--786861 Score: 1711
Period size: 439 Copynumber: 2.0 Consensus size: 439
785974 GTCAGATCAT
*
785984 CACATTTTTTCACTGTTTCTAGTTATTACCCTTTTTCTCTGCTGGTAAAGATATTGTTCTTTCAA
1 CACATTTTTTCACTGTTTCTAGTTATTACCCTTTTGCTCTGCTGGTAAAGATATTGTTCTTTCAA
786049 TCCTGATTATCTAGGAAAGACTTGGGTTTGGGTTAATTTTAGCTTGGAAGTTGCTAATTTTTATG
66 TCCTGATTATCTAGGAAAGACTTGGGTTTGGGTTAATTTTAGCTTGGAAGTTGCTAATTTTTATG
*
786114 ATGTTAAGTTACCAGAATGCTGATAGGGTGGTGAAGGGGTTAATTGAGTTTTGGTTTGAGTTCTT
131 ATGTTAAGTTACCAGAATGCTGATAGGGTGGTGAAGGGGTTAATTGAGTTTTGGTTTGAGTCCTT
786179 TCGTTTTGCATTTGCTTATGCTGCAAAGCCATACAAACCTCCTTGTCAAAGGTGCAGTCTTTAGA
196 TCGTTTTGCATTTGCTTATGCTGCAAAGCCATACAAACCTCCTTGTCAAAGGTGCAGTCTTTAGA
786244 TGGTTCCTAAGATAGAAAGGAGAAATGGGTAATGGGACTTCTCGCGTTGCTGGTTGCTTTAATGG
261 TGGTTCCTAAGATAGAAAGGAGAAATGGGTAATGGGACTTCTCGCGTTGCTGGTTGCTTTAATGG
*
786309 AAAAAGTGAGGTTGATTTAGATCTAGAGCCCTTGGAAGAAGGTTTAGGCCATTTACTCCATCAAA
326 AAAAAGCGAGGTTGATTTAGATCTAGAGCCCTTGGAAGAAGGTTTAGGCCATTTACTCCATCAAA
786374 ACCTGAGACGTTTACAGTTGATTCGAGTACTCTTGATTCCGAGACTTTA
391 ACCTGAGACGTTTACAGTTGATTCGAGTACTCTTGATTCCGAGACTTTA
786423 CACATTTTTTCACTGTTTCTAGTTATTACCCTTTTGCTCTGCTGGTAAAGATATTGTTCTTTCAA
1 CACATTTTTTCACTGTTTCTAGTTATTACCCTTTTGCTCTGCTGGTAAAGATATTGTTCTTTCAA
786488 TCCTGATTATCTAGGAAAGACTTGGGTTTGGGTTAATTTTAGCTTGGAAGTTGCTAATTTTTATG
66 TCCTGATTATCTAGGAAAGACTTGGGTTTGGGTTAATTTTAGCTTGGAAGTTGCTAATTTTTATG
786553 ATGTTAAGTTACCAGAATGCTGATAGGGTGGTGAAGGGGTTAATTGAGTTTTGGTTTGAGTCCTT
131 ATGTTAAGTTACCAGAATGCTGATAGGGTGGTGAAGGGGTTAATTGAGTTTTGGTTTGAGTCCTT
786618 TCGTTTTGCATTTGCTTATGCTGCAAAGCCATACAAACCTCCTTGTCAAAGGTGCAGTCTTTAGA
196 TCGTTTTGCATTTGCTTATGCTGCAAAGCCATACAAACCTCCTTGTCAAAGGTGCAGTCTTTAGA
786683 TGGTTCCTAAGATAGAAAGGAGAAATGGGTAATGGGACTTCTCGCGTTGCTGGTTGCTTTAATGG
261 TGGTTCCTAAGATAGAAAGGAGAAATGGGTAATGGGACTTCTCGCGTTGCTGGTTGCTTTAATGG
*
786748 AAAAAGCGAGGTTGATTTAGATCTAGAGCCCTTGGATGAAGGTTTAGGCCATTTACTCCATCAAA
326 AAAAAGCGAGGTTGATTTAGATCTAGAGCCCTTGGAAGAAGGTTTAGGCCATTTACTCCATCAAA
*
786813 ATCTGAGACGTTTACAGTTGATTCGAGTACTCTTGATTCCGAGACTTTA
391 ACCTGAGACGTTTACAGTTGATTCGAGTACTCTTGATTCCGAGACTTTA
786862 AGTGGGTCAT
Statistics
Matches: 434, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
439 434 1.00
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.37
Consensus pattern (439 bp):
CACATTTTTTCACTGTTTCTAGTTATTACCCTTTTGCTCTGCTGGTAAAGATATTGTTCTTTCAA
TCCTGATTATCTAGGAAAGACTTGGGTTTGGGTTAATTTTAGCTTGGAAGTTGCTAATTTTTATG
ATGTTAAGTTACCAGAATGCTGATAGGGTGGTGAAGGGGTTAATTGAGTTTTGGTTTGAGTCCTT
TCGTTTTGCATTTGCTTATGCTGCAAAGCCATACAAACCTCCTTGTCAAAGGTGCAGTCTTTAGA
TGGTTCCTAAGATAGAAAGGAGAAATGGGTAATGGGACTTCTCGCGTTGCTGGTTGCTTTAATGG
AAAAAGCGAGGTTGATTTAGATCTAGAGCCCTTGGAAGAAGGTTTAGGCCATTTACTCCATCAAA
ACCTGAGACGTTTACAGTTGATTCGAGTACTCTTGATTCCGAGACTTTA
Found at i:790191 original size:10 final size:10
Alignment explanation
Indices: 790176--790205 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
790166 GTCTCATTTG
790176 TTTATTTTTT
1 TTTATTTTTT
790186 TTTA-TTTTT
1 TTTATTTTTT
790195 TTTATTTTTT
1 TTTATTTTTT
790205 T
1 T
790206 AGCTGTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (10 bp):
TTTATTTTTT
Found at i:790206 original size:8 final size:9
Alignment explanation
Indices: 790176--790205 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
790166 GTCTCATTTG
790176 TTTATTTTTT
1 TTTA-TTTTT
790186 TTTATTTTT
1 TTTATTTTT
790195 TTTATTTTT
1 TTTATTTTT
790204 TT
1 TT
790206 AGCTGTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 16 0.80
10 4 0.20
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (9 bp):
TTTATTTTT
Found at i:790349 original size:27 final size:27
Alignment explanation
Indices: 790306--790358 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
790296 AATTTATGCG
* *
790306 TATTTTATATTTGGGTCGCTGATTTAA
1 TATTTTATATTTAGGTCACTGATTTAA
*
790333 TATTTTATGTTTAGGTCACTGATTTA
1 TATTTTATATTTAGGTCACTGATTTA
790359 TTTCTGATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.23, C:0.08, G:0.17, T:0.53
Consensus pattern (27 bp):
TATTTTATATTTAGGTCACTGATTTAA
Found at i:798998 original size:42 final size:41
Alignment explanation
Indices: 798932--799033 Score: 123
Period size: 42 Copynumber: 2.5 Consensus size: 41
798922 TAAGCAATTT
* * * *
798932 ATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATG
1 ATAAATCCTTCGGGCCATCAGTAAGCCTTTAGAGCAAGATG
* * *
798973 CTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGCAAGATG
1 -ATAAATCCTTCGGGCCATCAGTAAGCCTTTAGAGCAAGATG
*
799015 ATAAGTCCTTCGGGCCATC
1 ATAAATCCTTCGGGCCATC
799034 CATAAAACCT
Statistics
Matches: 50, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
41 16 0.32
42 34 0.68
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.29
Consensus pattern (41 bp):
ATAAATCCTTCGGGCCATCAGTAAGCCTTTAGAGCAAGATG
Found at i:799203 original size:42 final size:41
Alignment explanation
Indices: 799156--799249 Score: 109
Period size: 42 Copynumber: 2.3 Consensus size: 41
799146 TTATAAGTCA
* * *
799156 TTCGGGCCATCAGTAAGTCTTTCA-AGCATGATGCTTAAATCC
1 TTCGGGCCATCAGTAAGCCTTT-AGAGCAAGATG-ATAAATCC
* * *
799198 TTCGGGTCATCTGTAAGCCTTTAGAGCAAGATGATAAGTCC
1 TTCGGGCCATCAGTAAGCCTTTAGAGCAAGATGATAAATCC
799239 TTCGGGCCATC
1 TTCGGGCCATC
799250 CATAAAACCT
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
41 17 0.39
42 27 0.61
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.30
Consensus pattern (41 bp):
TTCGGGCCATCAGTAAGCCTTTAGAGCAAGATGATAAATCC
Found at i:799446 original size:213 final size:214
Alignment explanation
Indices: 798926--799645 Score: 1183
Period size: 213 Copynumber: 3.4 Consensus size: 214
798916 ACCCAGTAAG
798926 CAATTTATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCA
1 CAATTTATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCA
798991 TCTGTAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAAACCTTCGGGTAGGATG
66 TCTGTAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAAACCTTCGGGTAGGATG
*
799056 TTTTCACATGAATTTGAAAATGAAAAAAATGATGTTTTGAGAAGATGAAATTTTTTAAAACAAAG
131 TTTTCACATGAATTTGAAAATG--AAAAATGATGTTTTGAGAAGATGAAATTTTTAAAAACAAAG
*
799121 AATGTGATTTTCAAAATTTCA
194 AATGCGATTTTCAAAATTTCA
* *
799142 CAATTTATAAGTCATTCGGGCCATCAGTAAGTCTTTCAAGCATGATGCTTAAATCCTTCGGGTCA
1 CAATTTATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCA
*
799207 TCTGTAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAAACCTTCGGGTAAGATG
66 TCTGTAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAAACCTTCGGGTAGGATG
* * * * *
799272 TTTTTACATGAATTTGAAAATG-AAAATTATGTTTTAAGAAGATGAAATTTTTGAAAACGAAGAA
131 TTTTCACATGAATTTGAAAATGAAAAATGATGTTTTGAGAAGATGAAATTTTTAAAAACAAAGAA
799336 TGCGATTTTCAAAATTTCA
196 TGCGATTTTCAAAATTTCA
* * * * *
799355 TAATTTATAAGTCCGTCGGGCTATCAGTAAGTCTTTCGAGCTTGATGTTTAAATCCTTCGGGTCA
1 CAATTTATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCA
* ** *
799420 TCTGTAAGCCTTTAAAGCAAGATGATAAGTCCTTCGGGCCATCTGTAAAACCTTCGGGTAGGATA
66 TCTGTAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAAACCTTCGGGTAGGATG
* * *
799485 TTTTCACATGAATTTAAAAATGAAAAACGATGTTTTGAGAAGATGAAACTTTTAAAAACAAAGAA
131 TTTTCACATGAATTTGAAAATGAAAAATGATGTTTTGAGAAGATGAAATTTTTAAAAACAAAGAA
799550 TGCGATTTTCAAAATTTCA
196 TGCGATTTTCAAAATTTCA
*
799569 CAATTTATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGT-A
1 CAATTTATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCA
*
799633 ACTGGTAAGCCTT
66 TCT-GTAAGCCTT
799646 CACGGAAGAG
Statistics
Matches: 467, Mismatches: 35, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
213 197 0.42
214 122 0.26
216 148 0.32
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (214 bp):
CAATTTATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCA
TCTGTAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAAACCTTCGGGTAGGATG
TTTTCACATGAATTTGAAAATGAAAAATGATGTTTTGAGAAGATGAAATTTTTAAAAACAAAGAA
TGCGATTTTCAAAATTTCA
Found at i:799723 original size:80 final size:80
Alignment explanation
Indices: 799590--799871 Score: 465
Period size: 80 Copynumber: 3.5 Consensus size: 80
799580 TCCTTCGGGC
799590 CATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTAACTGGTAAGCCTTCACGGAAGA
1 CATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTAACTGGTAAGCCTTCACGGAAGA
799655 GTAGTGAAGCAAATT
66 GTAGTGAAGCAAATT
* * * ** *
799670 CATCAGTAAGTCTTTCGAGCATGGTAATTAAATCCTTCGGGTAATTTTTAAGCCTTCACCGAAGA
1 CATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTAACTGGTAAGCCTTCACGGAAGA
**
799735 GTAGTGAAGCAAACC
66 GTAGTGAAGCAAATT
799750 CATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTAACTGGTAAGCCTTCACGGAAGA
1 CATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTAACTGGTAAGCCTTCACGGAAGA
799815 GTAGTGAAGCAAATT
66 GTAGTGAAGCAAATT
* * *
799830 CATCAGTAAGTCTTTCGAGCAGGATGATGAAATCTTTCGGGT
1 CATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGT
799872 CATCAGTAAG
Statistics
Matches: 183, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
80 183 1.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.28
Consensus pattern (80 bp):
CATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTAACTGGTAAGCCTTCACGGAAGA
GTAGTGAAGCAAATT
Found at i:799876 original size:42 final size:42
Alignment explanation
Indices: 799829--799932 Score: 163
Period size: 42 Copynumber: 2.5 Consensus size: 42
799819 TGAAGCAAAT
*
799829 TCATCAGTAAGTCTTTCGAGCAGGATGATGAAATCTTTCGGG
1 TCATCAGTAAGTCTTTCGAGCAGGATGATGAAATCCTTCGGG
* *
799871 TCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGG
1 TCATCAGTAAGTCTTTCGAGCAGGATGATGAAATCCTTCGGG
**
799913 TCATTTGTAAGTCTTTCGAG
1 TCATCAGTAAGTCTTTCGAG
799933 TGAGATGATA
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 57 1.00
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (42 bp):
TCATCAGTAAGTCTTTCGAGCAGGATGATGAAATCCTTCGGG
Found at i:800393 original size:53 final size:53
Alignment explanation
Indices: 800335--800597 Score: 321
Period size: 53 Copynumber: 4.9 Consensus size: 53
800325 AGAATTACAC
* *
800335 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGTGAACCCGTAGG
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAAG
* * *
800388 CAGAAGATTGTTCGAGTTCTACTCCCTGAAACAAGAGGGAGCAAACCTGTAAG
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAAG
* * * *
800441 TAGAAGATTATTCAAGTTCTACCCCCTGAAGCAAGAGGGAGCGAACCCGTAAG
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAAG
* * * * ***
800494 CAGAATATTATTCGAGTTCTACTCCCTGAAGCAATAGGGAGCGAACCCATTTT
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAAG
* * * *
800547 TAGAAGATTGTTCGAGTTCCTTAATCCCAGAA-CAAGAGGGAGCGGACCCGT
1 CAGAAGATTGTTCGAGTT-C-TACTCCCTGAAGCAAGAGGGAGCGAACCCGT
800598 CATTTGAAGA
Statistics
Matches: 179, Mismatches: 29, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
53 153 0.85
54 17 0.09
55 9 0.05
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (53 bp):
CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAAG
Found at i:801716 original size:10 final size:10
Alignment explanation
Indices: 801698--801728 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
801688 GTCTCATTTG
*
801698 TTTAATTTTT
1 TTTATTTTTT
801708 TTTATTTTTT
1 TTTATTTTTT
801718 TTTATTTTTT
1 TTTATTTTTT
801728 T
1 T
801729 AGCTGTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (10 bp):
TTTATTTTTT
Found at i:801872 original size:27 final size:27
Alignment explanation
Indices: 801829--801881 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
801819 AATTTATGCG
* *
801829 TATTTTATATTTGGGTCGCTGATTTAA
1 TATTTTATATTTAGGTCACTGATTTAA
*
801856 TATTTTATGTTTAGGTCACTGATTTA
1 TATTTTATATTTAGGTCACTGATTTA
801882 TTTCTGATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.23, C:0.08, G:0.17, T:0.53
Consensus pattern (27 bp):
TATTTTATATTTAGGTCACTGATTTAA
Found at i:808548 original size:63 final size:63
Alignment explanation
Indices: 808480--808607 Score: 229
Period size: 63 Copynumber: 2.0 Consensus size: 63
808470 ATTTGAAAAC
808480 CAAAACTCATATGTTTTTATAGTCTTTAATACTCAACCTAAAACTTTTAAGATTAAAAACTAT
1 CAAAACTCATATGTTTTTATAGTCTTTAATACTCAACCTAAAACTTTTAAGATTAAAAACTAT
* * *
808543 CAAAACTCATGTGTTTTTATAGTCTTTAATACTCAACCTAAAACTTTTAATATTAAAAATTAT
1 CAAAACTCATATGTTTTTATAGTCTTTAATACTCAACCTAAAACTTTTAAGATTAAAAACTAT
808606 CA
1 CA
808608 TTTTAACCTC
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.41, C:0.16, G:0.05, T:0.39
Consensus pattern (63 bp):
CAAAACTCATATGTTTTTATAGTCTTTAATACTCAACCTAAAACTTTTAAGATTAAAAACTAT
Found at i:828104 original size:2 final size:2
Alignment explanation
Indices: 828097--828137 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
828087 GCCAAGATAC
828097 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
828138 CACTATAAAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:837406 original size:18 final size:17
Alignment explanation
Indices: 837357--837408 Score: 61
Period size: 16 Copynumber: 3.1 Consensus size: 17
837347 AAAAAATATG
* *
837357 AAATAAATTAT-TATTG
1 AAATAAATTATATAGTA
837373 AAATAAATTATATAGTA
1 AAATAAATTATATAGTA
*
837390 AAATAAAGTTATCTAGTA
1 AAATAAA-TTATATAGTA
837408 A
1 A
837409 TGTAAAGTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
16 11 0.35
17 10 0.32
18 10 0.32
ACGTcount: A:0.54, C:0.02, G:0.08, T:0.37
Consensus pattern (17 bp):
AAATAAATTATATAGTA
Found at i:838431 original size:90 final size:90
Alignment explanation
Indices: 838278--838458 Score: 362
Period size: 90 Copynumber: 2.0 Consensus size: 90
838268 ATTATTTTTC
838278 AAATTTAGGCTTAAGGGTCACCTTTGTCCCTATAGTAGATACAATTTATCATTTTCGCCCCTATC
1 AAATTTAGGCTTAAGGGTCACCTTTGTCCCTATAGTAGATACAATTTATCATTTTCGCCCCTATC
838343 GTATTTTCAAATCAATTTAGCTCTT
66 GTATTTTCAAATCAATTTAGCTCTT
838368 AAATTTAGGCTTAAGGGTCACCTTTGTCCCTATAGTAGATACAATTTATCATTTTCGCCCCTATC
1 AAATTTAGGCTTAAGGGTCACCTTTGTCCCTATAGTAGATACAATTTATCATTTTCGCCCCTATC
838433 GTATTTTCAAATCAATTTAGCTCTT
66 GTATTTTCAAATCAATTTAGCTCTT
838458 A
1 A
838459 GGGTTGTTTA
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 91 1.00
ACGTcount: A:0.27, C:0.21, G:0.12, T:0.40
Consensus pattern (90 bp):
AAATTTAGGCTTAAGGGTCACCTTTGTCCCTATAGTAGATACAATTTATCATTTTCGCCCCTATC
GTATTTTCAAATCAATTTAGCTCTT
Found at i:842166 original size:2 final size:2
Alignment explanation
Indices: 842159--842184 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
842149 TCCAGTTAGC
842159 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
842185 GGTCCAAAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:851730 original size:10 final size:10
Alignment explanation
Indices: 851715--851740 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
851705 ACATCAATTA
851715 GGTCTCTTTC
1 GGTCTCTTTC
851725 GGTCTCTTTC
1 GGTCTCTTTC
851735 GGTCTC
1 GGTCTC
851741 ACATCGCACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.00, C:0.31, G:0.23, T:0.46
Consensus pattern (10 bp):
GGTCTCTTTC
Found at i:855773 original size:19 final size:19
Alignment explanation
Indices: 855746--855784 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
855736 TAATAATTTC
*
855746 AATAGTATTTATTA-TAATT
1 AATAATATTT-TTAGTAATT
855765 AATAATATTTTTAGTAATT
1 AATAATATTTTTAGTAATT
855784 A
1 A
855785 TTTTATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (19 bp):
AATAATATTTTTAGTAATT
Found at i:866395 original size:16 final size:17
Alignment explanation
Indices: 866370--866402 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
866360 AATAATAATA
866370 TCTTGATTAAT-TTTTT
1 TCTTGATTAATATTTTT
*
866386 TCTTGGTTAATATTTTT
1 TCTTGATTAATATTTTT
866403 AAAATTGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.18, C:0.06, G:0.09, T:0.67
Consensus pattern (17 bp):
TCTTGATTAATATTTTT
Found at i:868187 original size:24 final size:24
Alignment explanation
Indices: 868146--868191 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
868136 TCATTAGGGC
* *
868146 CATGGCCGTGGCCGTGATCATGGT
1 CATGGCCGTGACCATGATCATGGT
*
868170 CATGGCTGTGACCATGATCATG
1 CATGGCCGTGACCATGATCATG
868192 TCCCAATAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.17, C:0.24, G:0.33, T:0.26
Consensus pattern (24 bp):
CATGGCCGTGACCATGATCATGGT
Found at i:870738 original size:2 final size:2
Alignment explanation
Indices: 870731--870755 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
870721 TTGTTATTTG
870731 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
870756 GAGAGAGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:870760 original size:2 final size:2
Alignment explanation
Indices: 870755--870818 Score: 74
Period size: 2 Copynumber: 32.0 Consensus size: 2
870745 ATATATATAT
* * * *
870755 AG AG AG AG AG AG AG AG AG AT AG TG AG AG AT AG TG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* *
870797 AG AG AT AG TG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG
870819 TATAAAATTT
Statistics
Matches: 50, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (2 bp):
AG
Found at i:871328 original size:14 final size:16
Alignment explanation
Indices: 871292--871328 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
871282 TATTAATGTA
871292 TGAATCATTTATATTTT
1 TGAAT-ATTTATATTTT
871309 TGAATATTT-TATTTT
1 TGAATATTTATATTTT
871324 T-AATA
1 TGAATA
871329 AGAAATTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 4 0.20
15 7 0.35
16 4 0.20
17 5 0.25
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.59
Consensus pattern (16 bp):
TGAATATTTATATTTT
Found at i:871992 original size:130 final size:130
Alignment explanation
Indices: 871788--872035 Score: 397
Period size: 130 Copynumber: 1.9 Consensus size: 130
871778 AATTTTCTTC
* * * *
871788 TAATTAGGTGGTGACATGTGTCACCAATAACATATATCATGATCAGGTGTTAACATATGTCAGAT
1 TAATTAGGTGGTGACATATGTCACCAATAACACATATCATGATCAGGTGCTAACACATGTCAGAT
** *
871853 CCTGGTTAAATGATTAATTTATTAAATTTTATTTAATTTAGGACCAAATTGATAGCATATATAAA
66 CCTAATTAAATGATTAATTTATTAAATTCTATTTAATTTAGGACCAAATTGATAGCATATATAAA
* * * *
871918 TAATTAGGTGGTGACATATGTCACCAATGACACGTGTCATGATCATGTGCTAACACATGTCAGAT
1 TAATTAGGTGGTGACATATGTCACCAATAACACATATCATGATCAGGTGCTAACACATGTCAGAT
871983 CCTAATTAAATGATTAATTTATTAAATTCTATTTAATTTAGGACCAAATTGAT
66 CCTAATTAAATGATTAATTTATTAAATTCTATTTAATTTAGGACCAAATTGAT
872036 TATATAAATA
Statistics
Matches: 107, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
130 107 1.00
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (130 bp):
TAATTAGGTGGTGACATATGTCACCAATAACACATATCATGATCAGGTGCTAACACATGTCAGAT
CCTAATTAAATGATTAATTTATTAAATTCTATTTAATTTAGGACCAAATTGATAGCATATATAAA
Found at i:872483 original size:35 final size:35
Alignment explanation
Indices: 872433--872508 Score: 116
Period size: 35 Copynumber: 2.2 Consensus size: 35
872423 AATTGAATTG
* *
872433 AATTGAATTATTTTGGAATTTAGGGTTGAGAATGA
1 AATTGAATTACTTTGGAAATTAGGGTTGAGAATGA
* *
872468 AATTGAATTACTTTGGAAATTGGGGTTTAGAATGA
1 AATTGAATTACTTTGGAAATTAGGGTTGAGAATGA
872503 AATTGA
1 AATTGA
872509 GGACTGTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.36, C:0.01, G:0.25, T:0.38
Consensus pattern (35 bp):
AATTGAATTACTTTGGAAATTAGGGTTGAGAATGA
Found at i:875337 original size:2 final size:2
Alignment explanation
Indices: 875283--875317 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
875273 TAAAGTTTGT
875283 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
875318 TATCCGACAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:876536 original size:37 final size:36
Alignment explanation
Indices: 876480--876596 Score: 166
Period size: 35 Copynumber: 3.2 Consensus size: 36
876470 CCCATTATCA
* *
876480 TTTTC-AACAAACATCTACCAAACTTTGAAAAACTAT
1 TTTTCAAAGAAACATTTACCAAACTTTGAAAAAC-AT
*
876516 TTTTCAAAGAAACATTTACCAAACTTTGAAAACCA-
1 TTTTCAAAGAAACATTTACCAAACTTTGAAAAACAT
*
876551 TTTTCAAAGAAACATTTACCAAACTTTGAAAATCATT
1 TTTTCAAAGAAACATTTACCAAACTTTGAAAAACA-T
876588 TTTTCAAAG
1 TTTTCAAAG
876597 TTGGTTACCA
Statistics
Matches: 74, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
35 34 0.46
36 6 0.08
37 34 0.46
ACGTcount: A:0.44, C:0.19, G:0.05, T:0.32
Consensus pattern (36 bp):
TTTTCAAAGAAACATTTACCAAACTTTGAAAAACAT
Found at i:876552 original size:21 final size:20
Alignment explanation
Indices: 876525--876588 Score: 59
Period size: 20 Copynumber: 3.4 Consensus size: 20
876515 TTTTTCAAAG
876525 AAACATTTACCAAACTTTGA
1 AAACATTTACCAAACTTTGA
*
876545 AAACCATTT-TCAAA----G-
1 AAA-CATTTACCAAACTTTGA
876560 AAACATTTACCAAACTTTGA
1 AAACATTTACCAAACTTTGA
876580 AAATCATTT
1 AAA-CATTT
876589 TTTCAAAGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 15
0.67 0.04 0.29
Matches are distributed among these distances:
14 5 0.15
15 7 0.21
16 1 0.03
19 1 0.03
20 10 0.29
21 10 0.29
ACGTcount: A:0.45, C:0.19, G:0.05, T:0.31
Consensus pattern (20 bp):
AAACATTTACCAAACTTTGA
Found at i:881164 original size:21 final size:20
Alignment explanation
Indices: 881137--881200 Score: 59
Period size: 20 Copynumber: 3.4 Consensus size: 20
881127 TTTTTCAAAG
881137 AAACATTTACCAAACTTTGA
1 AAACATTTACCAAACTTTGA
*
881157 AAACCATTT-TCAAA----G-
1 AAA-CATTTACCAAACTTTGA
881172 AAACATTTACCAAACTTTGA
1 AAACATTTACCAAACTTTGA
881192 AAATCATTT
1 AAA-CATTT
881201 TTTCAAAGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 15
0.67 0.04 0.29
Matches are distributed among these distances:
14 5 0.15
15 7 0.21
16 1 0.03
19 1 0.03
20 10 0.29
21 10 0.29
ACGTcount: A:0.45, C:0.19, G:0.05, T:0.31
Consensus pattern (20 bp):
AAACATTTACCAAACTTTGA
Found at i:881174 original size:35 final size:35
Alignment explanation
Indices: 881102--881201 Score: 155
Period size: 35 Copynumber: 2.8 Consensus size: 35
881092 TTTTCAACAT
* *
881102 ACATCTACCAAACTTTGTAAAACTATTTTTCAAAGAA
1 ACATTTACCAAACTTTG-AAAACCA-TTTTCAAAGAA
881139 ACATTTACCAAACTTTGAAAACCATTTTCAAAGAA
1 ACATTTACCAAACTTTGAAAACCATTTTCAAAGAA
*
881174 ACATTTACCAAACTTTGAAAATCATTTT
1 ACATTTACCAAACTTTGAAAACCATTTT
881202 TTCAAAGTTG
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
35 38 0.63
36 6 0.10
37 16 0.27
ACGTcount: A:0.43, C:0.19, G:0.05, T:0.33
Consensus pattern (35 bp):
ACATTTACCAAACTTTGAAAACCATTTTCAAAGAA
Found at i:886858 original size:17 final size:17
Alignment explanation
Indices: 886825--886859 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
886815 GAAATACTTG
* *
886825 TTTATTAATCTTCTTTT
1 TTTATTAATATTATTTT
886842 TTTATTAATATTATTTT
1 TTTATTAATATTATTTT
886859 T
1 T
886860 GGTAAATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTATTAATATTATTTT
Found at i:889825 original size:22 final size:22
Alignment explanation
Indices: 889797--889861 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 22
889787 ATTTAAATAA
889797 ATATTTTTAAAATATTATAAAT
1 ATATTTTTAAAATATTATAAAT
*
889819 ATATTTTTAGAATTATT-TAATAT
1 ATATTTTTA-AAATATTATAA-AT
*
889842 AAATTTTATAAAA-A-TATAAA
1 ATATTTT-TAAAATATTATAAA
889862 AATTATTTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
21 2 0.06
22 16 0.44
23 16 0.44
24 2 0.06
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.48
Consensus pattern (22 bp):
ATATTTTTAAAATATTATAAAT
Found at i:889835 original size:23 final size:22
Alignment explanation
Indices: 889787--889854 Score: 66
Period size: 23 Copynumber: 3.0 Consensus size: 22
889777 TAATATTATA
*
889787 ATTTAAATAAATATTTTTAAAAT
1 ATTT-AATATATATTTTTAAAAT
*
889810 ATTATAA-ATATATTTTTAGAATT
1 ATT-TAATATATATTTTTA-AAAT
*
889833 ATTTAATATAAATTTTATAAAA
1 ATTTAATATATATTTT-TAAAA
889855 ATATAAAAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
22 13 0.35
23 21 0.57
24 3 0.08
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (22 bp):
ATTTAATATATATTTTTAAAAT
Found at i:903170 original size:102 final size:102
Alignment explanation
Indices: 902981--903172 Score: 316
Period size: 102 Copynumber: 1.9 Consensus size: 102
902971 CAGAAGAATA
*
902981 TTGCCTTGCATTTAAATTTGTCTTTAACAGAAGAGCAGGTTAAGCAATATTAAAGAGGCAAATAA
1 TTGCCTTACATTTAAATTTGTCTTTAACAGAAGAGCAGGTTAAGCAATATTAAAGAGGCAAATAA
*
903046 TTCTGCAGAAATGCGATCAAAGGGGACAAAATTAAAG
66 TTCTGCAGAAATGCAATCAAAGGGGACAAAATTAAAG
* *
903083 TTGCCTTACATTTAAA-TTGTCTTTAACAGAAGAGCAGGGTTAAGCAATATTAAAGAGGCATATG
1 TTGCCTTACATTTAAATTTGTCTTTAACAGAAGAGCA-GGTTAAGCAATATTAAAGAGGCAAATA
903147 ATTCTGCAGAAATGCAA-CTAAAGGGG
65 ATTCTGCAGAAATGCAATC-AAAGGGG
903173 GGGGGGAAAT
Statistics
Matches: 84, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
101 21 0.25
102 63 0.75
ACGTcount: A:0.39, C:0.13, G:0.21, T:0.27
Consensus pattern (102 bp):
TTGCCTTACATTTAAATTTGTCTTTAACAGAAGAGCAGGTTAAGCAATATTAAAGAGGCAAATAA
TTCTGCAGAAATGCAATCAAAGGGGACAAAATTAAAG
Found at i:907939 original size:41 final size:41
Alignment explanation
Indices: 907882--907965 Score: 159
Period size: 41 Copynumber: 2.0 Consensus size: 41
907872 CCTATATAAA
907882 CTATAATCAAGGTAAACAAAAAAAACCGTATTCTCATGCAT
1 CTATAATCAAGGTAAACAAAAAAAACCGTATTCTCATGCAT
*
907923 CTATAATCAAGGTAAACTAAAAAAACCGTATTCTCATGCAT
1 CTATAATCAAGGTAAACAAAAAAAACCGTATTCTCATGCAT
907964 CT
1 CT
907966 GGGGAATCCC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.44, C:0.20, G:0.10, T:0.26
Consensus pattern (41 bp):
CTATAATCAAGGTAAACAAAAAAAACCGTATTCTCATGCAT
Found at i:916443 original size:64 final size:63
Alignment explanation
Indices: 916358--916498 Score: 167
Period size: 64 Copynumber: 2.2 Consensus size: 63
916348 TTGTTTAAGG
* * * *
916358 TGCATCGATGCACATGCAGTGCATCAATGCAT-TAATTTAAAAAGAAAACATCAAATAGGATTTA
1 TGCATCGATGCATAAGAAGTGCATCAATGCATCCAA-TTAAAAA-AAAACATCAAATAGGATTTA
* * * * *
916422 TGCATCGATGCATAAGAAGTGCATCGATGCATCCCCATTAAATACAAACATCGAATAGGATTTA
1 TGCATCGATGCATAAGAAGTGCATCAATGCAT-CCAATTAAAAAAAAACATCAAATAGGATTTA
916486 TGCATCGATGCAT
1 TGCATCGATGCAT
916499 GGTGTAGTGC
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
64 59 0.89
65 6 0.09
66 1 0.02
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.26
Consensus pattern (63 bp):
TGCATCGATGCATAAGAAGTGCATCAATGCATCCAATTAAAAAAAAACATCAAATAGGATTTA
Found at i:917203 original size:103 final size:103
Alignment explanation
Indices: 916978--917195 Score: 409
Period size: 103 Copynumber: 2.1 Consensus size: 103
916968 GTAGAGGGTC
*
916978 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGATGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
*
917043 TTGATCTTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
917081 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
917146 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
*
917184 TATGTGGCCCTT
1 TATGTGGTCCTT
917196 ATGGACATTA
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 112 1.00
ACGTcount: A:0.24, C:0.14, G:0.25, T:0.37
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
Found at i:917261 original size:23 final size:23
Alignment explanation
Indices: 917210--917263 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
917200 ACATTATTAT
*
917210 ATGGCACTACGGTGCAATTCTAC
1 ATGGCACTACGATGCAATTCTAC
* * *
917233 ACGGCACTCCGATGTAATTCTAC
1 ATGGCACTACGATGCAATTCTAC
*
917256 GTGGCACT
1 ATGGCACT
917264 TAGGTGCAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (23 bp):
ATGGCACTACGATGCAATTCTAC
Found at i:917274 original size:23 final size:23
Alignment explanation
Indices: 917210--917274 Score: 60
Period size: 23 Copynumber: 2.8 Consensus size: 23
917200 ACATTATTAT
917210 ATGGCAC-TACGGTGCAATTCTAC
1 ATGGCACTTA-GGTGCAATTCTAC
* ** * *
917233 ACGGCACTCCGATGTAATTCTAC
1 ATGGCACTTAGGTGCAATTCTAC
*
917256 GTGGCACTTAGGTGCAATT
1 ATGGCACTTAGGTGCAATT
917275 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 11, Indels: 2
0.70 0.26 0.05
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (23 bp):
ATGGCACTTAGGTGCAATTCTAC
Found at i:923459 original size:64 final size:64
Alignment explanation
Indices: 923374--923534 Score: 168
Period size: 64 Copynumber: 2.5 Consensus size: 64
923364 TTGTTTAAGG
* * * * *
923374 TGCATCGATGCACA-TGCAGTGCATCGATGCAT-TAATTTAAAAAGAAAACATCGAATATGATTT
1 TGCATCAATGCATAGTGTAGTGCATCGATGCATCCAA-TTAAAAA-AAAACATCGAATAGGATTT
923437 A
64 A
* * *
923438 TGCATCAATGCATAAG-G-AGTGCATCGATGCATCCCCATTAAATACAAACATCGAATAGGATTT
1 TGCATCAATGCAT-AGTGTAGTGCATCGATGCAT-CCAATTAAAAAAAAACATCGAATAGGATTT
923501 A
64 A
* *
923502 TGCATCGATGCATGGTGTAGTGCATCGATGCAT
1 TGCATCAATGCATAGTGTAGTGCATCGATGCAT
923535 ACCTTCATTA
Statistics
Matches: 82, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
63 1 0.01
64 57 0.70
65 23 0.28
66 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (64 bp):
TGCATCAATGCATAGTGTAGTGCATCGATGCATCCAATTAAAAAAAAACATCGAATAGGATTTA
Found at i:924173 original size:103 final size:103
Alignment explanation
Indices: 923994--924212 Score: 393
Period size: 103 Copynumber: 2.1 Consensus size: 103
923984 GGTAGAGGGT
* * * *
923994 ATATGTGGTCATTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACATATA
1 ATATGTGGTCCTTCGAGACATATATGTATTCTTTGGAACATGTGTGAGGTATGGTGAGACACATA
924059 CTTGATCCTTGGCATATGTATATGATTCTTAAGGAATG
66 CTTGATCCTTGGCATATGTATATGATTCTTAAGGAATG
924097 ATATGTGGTCCTTCGAGACATATATGTATTCTTTGGAACATGTGTGAGGTATGGTGAGACACATA
1 ATATGTGGTCCTTCGAGACATATATGTATTCTTTGGAACATGTGTGAGGTATGGTGAGACACATA
*
924162 CTTGATCCTTGGCGTATGTATATGATTCTTAAGGAATG
66 CTTGATCCTTGGCATATGTATATGATTCTTAAGGAATG
924200 ATATGTGGTCCTT
1 ATATGTGGTCCTT
924213 ATGGACATTG
Statistics
Matches: 111, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
103 111 1.00
ACGTcount: A:0.26, C:0.12, G:0.25, T:0.37
Consensus pattern (103 bp):
ATATGTGGTCCTTCGAGACATATATGTATTCTTTGGAACATGTGTGAGGTATGGTGAGACACATA
CTTGATCCTTGGCATATGTATATGATTCTTAAGGAATG
Done.