genome.fa.s8006.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008006.1 Hibiscus syriacus cultivar Beakdansim tig00110468_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  226016

Tables:   1   2   

This is table  1  of  2  ( 126 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4391--4495	37	2.8	37	85	0	138	40	15	13	31	1.85
4910--4956	22	2.0	24	88	8	71	25	2	0	72	0.96
5041--5066	13	2.0	13	100	0	52	23	7	0	69	1.14
5211--5259	16	3.0	17	82	5	57	26	0	0	73	0.83
5223--5257	13	2.8	13	91	4	54	25	0	0	74	0.82
5211--5273	29	2.2	29	85	5	83	25	1	1	71	1.04
5345--5388	18	2.6	16	82	13	52	18	9	0	72	1.10
5347--5391	19	2.5	17	82	7	54	17	8	0	73	1.08
9944--10004	14	4.3	13	74	15	50	80	3	11	4	0.99
9945--10002	20	2.8	20	80	15	55	79	3	12	5	1.02
11608--12484	106	8.3	106	92	0	1421	34	25	17	22	1.96
11608--12858	212	6.0	212	86	4	1745	34	25	17	22	1.95
11608--12858	318	4.0	317	88	4	1813	34	25	17	22	1.95
12292--12858	192	2.8	193	83	6	672	35	25	17	22	1.95
12425--12572	43	3.4	43	67	15	117	37	25	14	22	1.93
12080--12858	404	1.9	404	92	1	1294	35	25	17	22	1.95
12186--12782	298	2.0	298	91	0	978	36	25	16	22	1.94
12483--12859	106	3.5	106	87	3	492	35	24	17	22	1.95
13607--13710	37	2.8	36	86	1	136	39	15	14	30	1.87
14132--14178	22	2.2	20	85	7	58	27	0	0	72	0.85
14275--14384	29	3.6	29	67	18	80	28	6	3	61	1.37
14298--14389	22	4.3	22	67	20	59	26	5	4	64	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14268--14429	64	2.5	65	92	4	258	29	4	3	62	1.33
14480--14504	12	2.1	12	100	0	50	24	0	0	76	0.80
14473--14533	20	3.3	19	84	11	81	22	1	0	75	0.89
15995--16054	22	2.7	22	82	7	68	11	10	15	63	1.52
24771--24807	2	19.5	2	89	10	60	48	0	51	0	1.00
26791--26815	4	6.2	4	100	0	50	52	24	0	24	1.48
30935--30968	15	2.2	15	89	5	50	32	0	0	67	0.91
33132--33252	21	5.8	21	83	3	136	20	23	28	27	1.99
33115--33252	42	3.3	42	81	0	150	20	23	28	26	1.99
33641--33665	3	8.3	3	100	0	50	32	0	0	68	0.90
35784--35808	4	6.2	4	100	0	50	24	0	0	76	0.80
39607--39696	42	2.1	42	89	0	135	32	18	22	26	1.97
39617--40669	216	4.9	216	91	2	1618	31	19	15	33	1.93
40673--40878	35	5.9	34	89	2	268	21	20	22	35	1.96
40672--40878	103	2.0	103	86	6	292	21	20	22	35	1.96
45536--45664	55	2.3	55	90	2	206	20	23	13	43	1.86
46137--46169	17	1.9	17	93	0	57	30	24	15	30	1.95
46139--46178	17	2.4	17	86	0	53	30	27	12	30	1.93
49641--49695	26	2.2	24	78	18	60	27	3	1	67	1.17
60303--60348	22	2.1	22	92	8	76	76	0	15	8	1.02
60716--60750	18	1.9	18	94	0	61	34	5	5	54	1.48
61907--62725	122	6.9	113	81	8	635	39	15	18	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62150--62725	122	4.7	122	89	2	809	39	14	18	26	1.90
61931--62725	244	3.3	239	83	8	882	39	14	18	26	1.90
63157--63238	21	4.0	21	82	1	94	31	34	24	9	1.88
69066--69159	42	2.2	42	88	0	134	31	22	21	24	1.98
69080--70132	210	4.9	216	90	2	1600	32	19	15	33	1.93
70136--70341	35	5.9	34	88	3	261	21	19	23	35	1.96
70135--70341	34	6.0	34	89	2	263	21	19	23	36	1.95
70135--70341	103	2.0	103	85	8	285	21	19	23	36	1.95
74997--75125	55	2.3	55	94	2	224	20	22	13	44	1.86
76073--76149	25	3.2	23	78	12	68	31	5	1	62	1.25
86733--86771	17	2.3	17	86	8	53	74	0	15	10	1.07
86734--86778	23	2.0	23	91	4	74	75	0	15	8	1.03
87143--87177	18	1.9	18	94	0	61	34	5	5	54	1.48
88573--89148	122	4.7	122	90	2	843	39	14	19	26	1.90
88348--89148	244	3.4	240	85	8	950	39	14	18	26	1.90
89581--89663	21	4.0	21	86	6	98	34	34	21	8	1.84
91945--91970	2	13.0	2	100	0	52	50	0	0	50	1.00
93427--93458	16	1.9	17	93	6	57	75	3	15	6	1.14
93517--93558	3	14.0	3	100	0	84	66	0	0	33	0.92
94796--94839	19	2.2	20	88	4	63	75	2	4	18	1.09
94785--94839	19	2.6	21	77	16	60	72	1	3	21	1.09
94842--94948	33	3.3	31	75	15	85	48	4	1	44	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94865--95124	34	7.5	34	73	18	164	46	6	1	45	1.40
94914--95224	37	8.8	36	76	13	208	43	6	2	47	1.42
94887--95237	74	4.9	72	76	14	266	44	7	2	46	1.43
94863--95225	37	10.2	35	70	19	193	44	6	2	46	1.43
96435--96491	19	2.9	19	75	14	62	66	1	8	22	1.29
96778--96838	24	2.4	25	89	8	88	67	3	0	29	1.07
96684--96811	15	8.3	15	66	18	50	66	3	3	26	1.24
97233--97330	37	2.6	37	88	3	135	33	12	13	40	1.81
98087--99362	106	12.0	106	92	0	1987	22	18	25	34	1.96
100307--100362	22	2.5	22	94	0	103	26	12	25	35	1.91
100955--101020	16	4.4	16	71	21	52	0	13	9	77	0.99
100954--101013	28	2.1	28	84	6	77	0	15	6	78	0.95
100971--100997	12	2.2	12	100	0	54	0	7	7	85	0.75
100965--101019	23	2.5	22	83	13	69	0	10	7	81	0.86
105550--105605	20	2.9	19	75	19	62	66	1	8	23	1.30
105687--105786	21	5.1	19	70	23	66	66	0	4	30	1.10
105702--105761	25	2.4	25	82	17	81	68	0	1	30	0.99
105702--105796	33	2.7	34	76	18	88	66	0	4	29	1.10
105774--105850	24	3.5	22	65	16	52	63	3	3	28	1.30
105879--105927	17	3.2	14	78	18	53	71	4	6	18	1.23
105889--105930	18	2.4	18	84	7	61	73	4	4	16	1.17
106430--106531	37	2.8	37	86	0	132	31	13	14	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113969--114017	21	2.3	20	86	10	71	81	2	16	0	0.78
116200--116423	114	2.0	114	93	3	389	34	16	19	29	1.94
117520--117606	46	1.9	45	88	4	131	33	17	20	28	1.95
118938--118992	22	2.5	22	82	5	67	34	12	12	40	1.82
119400--119689	110	2.6	113	82	7	342	37	15	19	27	1.92
119683--120460	113	6.9	113	92	0	1144	37	15	19	27	1.92
120842--120890	19	2.6	18	78	9	53	42	0	0	57	0.99
120809--120868	3	21.0	3	77	16	56	31	0	1	66	1.01
122107--122146	21	2.0	20	90	5	62	25	2	0	72	0.97
123569--123594	12	2.2	12	100	0	52	19	7	34	38	1.80
132672--132721	7	7.1	7	95	0	91	42	16	42	0	1.47
138228--138503	6	47.0	6	94	4	501	50	17	0	32	1.47
140087--140142	9	5.5	11	75	23	52	37	26	30	5	1.79
140333--140379	24	1.9	25	86	4	69	40	10	19	29	1.85
140887--140916	10	3.0	10	100	0	60	20	30	30	20	1.97
147680--147728	17	2.9	17	87	0	71	38	22	8	30	1.83
157358--157382	13	1.9	13	100	0	50	80	16	0	4	0.87
158894--158930	17	2.1	18	90	5	58	51	0	2	45	1.15
158910--158973	31	2.1	31	96	0	119	46	0	9	43	1.35
159145--159229	2	43.0	2	97	2	163	49	0	0	50	1.00
175137--175201	21	3.1	21	95	0	112	16	20	53	9	1.70
177108--177149	20	2.1	20	86	0	57	26	2	9	61	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177166--177223	30	2.0	29	89	3	89	37	1	18	41	1.61
178708--178745	20	1.9	19	89	5	58	34	15	21	28	1.94
178748--178923	95	1.9	95	81	4	221	31	16	23	28	1.96
179270--180287	56	18.3	56	88	2	1435	37	17	19	24	1.94
187525--187640	21	5.3	21	72	13	67	24	16	25	33	1.96
187576--187627	23	2.3	23	89	0	77	21	23	23	32	1.98
187583--187628	23	2.0	23	95	0	83	19	23	26	30	1.98
187526--187655	67	2.0	65	87	6	190	26	16	24	32	1.96
209451--209490	21	1.9	21	89	0	62	25	37	25	12	1.91
211126--211151	12	2.2	12	100	0	52	26	34	38	0	1.57

Tables:   1   2