Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008007.1 Hibiscus syriacus cultivar Beakdansim tig00110469_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1953294
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 11 of 11
Found at i:1850708 original size:18 final size:18
Alignment explanation
Indices: 1850685--1850724 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 18
1850675 TACTTTTAAT
1850685 CTCATCCATCTATTTTCA
1 CTCATCCATCTATTTTCA
1850703 --C-T-CATCTATTTTCA
1 CTCATCCATCTATTTTCA
1850717 CTCATCCA
1 CTCATCCA
1850725 ACGGAACGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 8
0.69 0.00 0.31
Matches are distributed among these distances:
14 12 0.67
15 1 0.06
16 2 0.11
17 1 0.06
18 2 0.11
ACGTcount: A:0.23, C:0.35, G:0.00, T:0.42
Consensus pattern (18 bp):
CTCATCCATCTATTTTCA
Found at i:1850710 original size:14 final size:14
Alignment explanation
Indices: 1850691--1850722 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
1850681 TAATCTCATC
1850691 CATCTATTTTCACT
1 CATCTATTTTCACT
1850705 CATCTATTTTCACT
1 CATCTATTTTCACT
1850719 CATC
1 CATC
1850723 CAACGGAACG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.22, C:0.31, G:0.00, T:0.47
Consensus pattern (14 bp):
CATCTATTTTCACT
Found at i:1850759 original size:2 final size:2
Alignment explanation
Indices: 1850752--1850782 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1850742 TATTGCATTC
1850752 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1850783 GGATTCACTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1850775 original size:225 final size:225
Alignment explanation
Indices: 1850510--1850938 Score: 559
Period size: 225 Copynumber: 1.9 Consensus size: 225
1850500 TATCATTGTC
* *
1850510 GACAACTTATTGTATTCATATATATATATATATATATATATAT-TAGGGTTAGTATTCA-A-ACA
1 GACAACTTATTGCATTCATATATATATATATATATATATATATATA----TAGGATTCATACACA
* * * * * * *
1850572 TTATAATATATTTTTAGTTTTACATAGATTTA-AGACCATTAGATGAGTAAAATATATGATTGAG
62 ATATAA-AAATCTTTAGTTTTACATAGATTTAGA-AACATTAGATGAGTAAAATAGATGACTAAG
* *
1850636 ATTGA-TTC-ATTTTTTTCCGGTAAATATCTTCACA-TTTCTTACTTTTAATCTC-ATCCATCTA
125 ATTGACTTCTATTTTTTCCCAGTAAATATCTTCACATTTTC-TACTTTTAATCTCAAT-CATCTA
*
1850697 TTTTCACTCATCTATTTTCACTCATCCAACGGAACGTT
188 TTATCACTCATCTATTTTCACTCATCCAACGGAACGTT
1850735 GACAACTTATTGCATTCATATATATATATATATATATATATATATATAGGATTCACTTACACAAT
1 GACAACTTATTGCATTCATATATATATATATATATATATATATATATAGGATTCA--TACACAAT
* *
1850800 ATAAAAATCTTTAGTTTTACATAGATTTAGAAACGTTAGATGAGTGAAATAGATGACTAAGATTG
64 ATAAAAATCTTTAGTTTTACATAGATTTAGAAACATTAGATGAGTAAAATAGATGACTAAGATTG
*
1850865 ACTTCTTATTTTTTCCCAGTAAATATCTTCACATTTTCTACTTTTAATCTCAATTATCTATTATC
129 ACTTC-TATTTTTTCCCAGTAAATATCTTCACATTTTCTACTTTTAATCTCAATCATCTATTATC
*
1850930 TCTCATCTA
193 ACTCATCTA
1850939 GCGGTACTAA
Statistics
Matches: 177, Mismatches: 16, Indels: 19
0.83 0.08 0.09
Matches are distributed among these distances:
222 8 0.05
225 95 0.54
226 14 0.08
228 54 0.31
229 6 0.03
ACGTcount: A:0.34, C:0.14, G:0.09, T:0.43
Consensus pattern (225 bp):
GACAACTTATTGCATTCATATATATATATATATATATATATATATATAGGATTCATACACAATAT
AAAAATCTTTAGTTTTACATAGATTTAGAAACATTAGATGAGTAAAATAGATGACTAAGATTGAC
TTCTATTTTTTCCCAGTAAATATCTTCACATTTTCTACTTTTAATCTCAATCATCTATTATCACT
CATCTATTTTCACTCATCCAACGGAACGTT
Found at i:1851445 original size:21 final size:20
Alignment explanation
Indices: 1851420--1851459 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
1851410 TCCCTAAATT
1851420 TTAAAATTTTCAATTTACTCA
1 TTAAAATTTT-AATTTACTCA
* *
1851441 TTAAACTTTTATTTTACTC
1 TTAAAATTTTAATTTACTC
1851460 CTATTTTGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.53
Consensus pattern (20 bp):
TTAAAATTTTAATTTACTCA
Found at i:1851734 original size:23 final size:23
Alignment explanation
Indices: 1851708--1851752 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
1851698 AAATCCCCTT
1851708 AAAACCCATGAAAACC-TAAATCC
1 AAAACCCATG-AAACCTTAAATCC
*
1851731 AAAACTCATGAAACCTTAAATC
1 AAAACCCATGAAACCTTAAATC
1851753 ATTCTAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.51, C:0.27, G:0.04, T:0.18
Consensus pattern (23 bp):
AAAACCCATGAAACCTTAAATCC
Found at i:1853961 original size:2 final size:2
Alignment explanation
Indices: 1853954--1853980 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1853944 CCTACTCGAT
1853954 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1853981 TTAAAATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1858899 original size:241 final size:242
Alignment explanation
Indices: 1858475--1858944 Score: 870
Period size: 241 Copynumber: 1.9 Consensus size: 242
1858465 GTTGAAATCC
*
1858475 CTTACCTCAACGGTTACATATAGATTATATCAATGGTTAAGACGAGTCTATCTTTTCTATAAAAC
1 CTTACCTCAACGGTTACATATAGATTATATCAATGGTTAAGACGAGTCTATCTTATCTATAAAAC
*
1858540 TAAATTCTCTCATGATCTAGAATTCAAACAATGATAATTGTGGGATTTATTTATAAGATAATTAA
66 TAAATTCTCTCATGATCTAGAATTCAAACAAGGATAATTGTGGGATTTATTTATAAGATAATTAA
**
1858605 GAATAATAATTATGTTTTTATCGTTTTATCTAAGATGAACAAGCCGGCTCCCTAGATATTCTGGA
131 GAATAATAATTATGTTTTTATCGTTTTATCTAAGATGAACAAGCCAACTCCCTAGATATTCTGGA
1858670 ATGTCTGAAAGTTCCAAAATGTGGCAAAGATAGTATGTGGTTGATCT
196 ATGTCTGAAAGTTCCAAAATGTGGCAAAGATAGTATGTGGTTGATCT
*
1858717 CTTACCTCAACGGTTACATATAGATTATATCAATGGTTAAGATGAGTC-ATCTTATCTATAAAAC
1 CTTACCTCAACGGTTACATATAGATTATATCAATGGTTAAGACGAGTCTATCTTATCTATAAAAC
1858781 TAAATTCTCTCATGATCTAGAATTCAAACAAGGATAATTGTGGGATTTATTTATAAGATAATTAA
66 TAAATTCTCTCATGATCTAGAATTCAAACAAGGATAATTGTGGGATTTATTTATAAGATAATTAA
* *
1858846 GAATAATAATTATGTTTTTATCGTTTTATCTAAGATGAACAGGCCAACTCCCTAGATCTTCTGGA
131 GAATAATAATTATGTTTTTATCGTTTTATCTAAGATGAACAAGCCAACTCCCTAGATATTCTGGA
1858911 ATGTCTGAAAGTTCCAAAATGTGGCAAAGATAGT
196 ATGTCTGAAAGTTCCAAAATGTGGCAAAGATAGT
1858945 CTTAGGCAAC
Statistics
Matches: 221, Mismatches: 7, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
241 174 0.79
242 47 0.21
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (242 bp):
CTTACCTCAACGGTTACATATAGATTATATCAATGGTTAAGACGAGTCTATCTTATCTATAAAAC
TAAATTCTCTCATGATCTAGAATTCAAACAAGGATAATTGTGGGATTTATTTATAAGATAATTAA
GAATAATAATTATGTTTTTATCGTTTTATCTAAGATGAACAAGCCAACTCCCTAGATATTCTGGA
ATGTCTGAAAGTTCCAAAATGTGGCAAAGATAGTATGTGGTTGATCT
Found at i:1864047 original size:17 final size:17
Alignment explanation
Indices: 1864012--1864057 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
1864002 TACTTTATTT
*
1864012 TTATTTTATTTATTTAA
1 TTATTTTATTTATTAAA
1864029 TTATTATTATTT-TTAAA
1 TTATT-TTATTTATTAAA
1864046 TTATATTTATTT
1 TTAT-TTTATTT
1864058 CTATTTTGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 19 0.73
18 7 0.27
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
TTATTTTATTTATTAAA
Found at i:1883805 original size:21 final size:22
Alignment explanation
Indices: 1883770--1883815 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
1883760 AATAAAATGT
1883770 TTAATGAAAAAGATACCAATTG
1 TTAATGAAAAAGATACCAATTG
* *
1883792 TTAAT-AAAATGATATCAATTG
1 TTAATGAAAAAGATACCAATTG
1883813 TTA
1 TTA
1883816 CCAATTGTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.48, C:0.07, G:0.11, T:0.35
Consensus pattern (22 bp):
TTAATGAAAAAGATACCAATTG
Found at i:1884709 original size:12 final size:12
Alignment explanation
Indices: 1884692--1884725 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
1884682 GCTTAAAATA
1884692 GAAGAATTGAAT
1 GAAGAATTGAAT
1884704 GAAGAATTGAAT
1 GAAGAATTGAAT
1884716 GAAGAATTGA
1 GAAGAATTGA
1884726 TGATTTTCGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.26, T:0.24
Consensus pattern (12 bp):
GAAGAATTGAAT
Found at i:1885617 original size:23 final size:24
Alignment explanation
Indices: 1885580--1885628 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 24
1885570 CGAGACATAC
*
1885580 AGTGGTCATTCGGGAC-ATTTCAT
1 AGTGGTCATTCGGGACAAATTCAT
* *
1885603 AGTGGTCCTTTGGGACAAATTCAT
1 AGTGGTCATTCGGGACAAATTCAT
1885627 AG
1 AG
1885629 CCCCTAGTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (24 bp):
AGTGGTCATTCGGGACAAATTCAT
Found at i:1887269 original size:18 final size:19
Alignment explanation
Indices: 1887234--1887271 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
1887224 TTTGATTTTC
* *
1887234 AAAATCAACTTTTGCTTTA
1 AAAATCAAATTATGCTTTA
1887253 AAAATCAAATTAT-CTTTA
1 AAAATCAAATTATGCTTTA
1887271 A
1 A
1887272 TTTTGAGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.45, C:0.13, G:0.03, T:0.39
Consensus pattern (19 bp):
AAAATCAAATTATGCTTTA
Found at i:1895861 original size:13 final size:13
Alignment explanation
Indices: 1895843--1895886 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
1895833 TGATAAATAA
*
1895843 AAAAAATTACAAT
1 AAAAAACTACAAT
* *
1895856 AAAAAAGTCCAAT
1 AAAAAACTACAAT
*
1895869 AAACAACTACAAT
1 AAAAAACTACAAT
1895882 AAAAA
1 AAAAA
1895887 GTACTAAATA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.68, C:0.14, G:0.02, T:0.16
Consensus pattern (13 bp):
AAAAAACTACAAT
Found at i:1896364 original size:33 final size:33
Alignment explanation
Indices: 1896302--1896365 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
1896292 GCCTCCTTGA
* *
1896302 GGGGTCATAAAACACTGTGAAGGTAGCGGCGAC
1 GGGGTCATAAAACACGGTGAAGGCAGCGGCGAC
*
1896335 GGGGTCATAAAAC-CAGGTGAAGGCGGCGGCG
1 GGGGTCATAAAACAC-GGTGAAGGCAGCGGCG
1896366 GCGGCATCTG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 1 0.04
33 26 0.96
ACGTcount: A:0.28, C:0.19, G:0.41, T:0.12
Consensus pattern (33 bp):
GGGGTCATAAAACACGGTGAAGGCAGCGGCGAC
Found at i:1897016 original size:3 final size:3
Alignment explanation
Indices: 1897010--1897035 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
1897000 CTAATTATAT
1897010 AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AA
1897036 AACCCAATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:1900620 original size:9 final size:9
Alignment explanation
Indices: 1900606--1900639 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
1900596 TAAGTAAAAT
1900606 ATTAAATAA
1 ATTAAATAA
1900615 ATTAAAT-A
1 ATTAAATAA
*
1900623 CTTAAATAA
1 ATTAAATAA
1900632 ATTAAATA
1 ATTAAATA
1900640 CAAAATATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (9 bp):
ATTAAATAA
Found at i:1900638 original size:17 final size:17
Alignment explanation
Indices: 1900602--1900640 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
1900592 GAATTAAGTA
1900602 AAATA-TTAAATAAATT
1 AAATACTTAAATAAATT
1900618 AAATACTTAAATAAATT
1 AAATACTTAAATAAATT
1900635 AAATAC
1 AAATAC
1900641 AAAATATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (17 bp):
AAATACTTAAATAAATT
Found at i:1905080 original size:2 final size:2
Alignment explanation
Indices: 1905073--1905100 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1905063 TCCATGTCAG
1905073 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1905101 TCATATTTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1906749 original size:17 final size:18
Alignment explanation
Indices: 1906727--1906760 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
1906717 GAGTACGACG
*
1906727 TATAAA-AAAATTAAAAT
1 TATAAATAAAAGTAAAAT
1906744 TATAAATAAAAGTAAAA
1 TATAAATAAAAGTAAAA
1906761 AGTCATAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (18 bp):
TATAAATAAAAGTAAAAT
Found at i:1907320 original size:23 final size:23
Alignment explanation
Indices: 1907276--1907331 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
1907266 ATTCGGTAAT
* *
1907276 GAAAATAAATTAAAAAGGGTAGA
1 GAAAAGAAATTAAAAAGCGTAGA
*
1907299 TAAAAGAAATTGAAAAA-CGTAGA
1 GAAAAGAAATT-AAAAAGCGTAGA
1907322 GAAATAGAAA
1 GAAA-AGAAA
1907332 ACTTACATAG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 17 0.63
24 10 0.37
ACGTcount: A:0.62, C:0.02, G:0.20, T:0.16
Consensus pattern (23 bp):
GAAAAGAAATTAAAAAGCGTAGA
Found at i:1910455 original size:2 final size:2
Alignment explanation
Indices: 1910450--1910503 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
1910440 TTAGATATTT
1910450 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1910492 TA TA TA TA TA TA
1 TA TA TA TA TA TA
1910504 CTTTTTTTTA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1910842 original size:22 final size:20
Alignment explanation
Indices: 1910814--1910861 Score: 69
Period size: 22 Copynumber: 2.3 Consensus size: 20
1910804 ATTTCATTTA
*
1910814 TTTATTTATTTTTCCTTTTATT
1 TTTATTTATTTTTAC--TTATT
1910836 TTTATTTATTTTTACTTATT
1 TTTATTTATTTTTACTTATT
1910856 TTTATT
1 TTTATT
1910862 CTTCATTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 11 0.44
22 14 0.56
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (20 bp):
TTTATTTATTTTTACTTATT
Found at i:1910845 original size:10 final size:10
Alignment explanation
Indices: 1910814--1910861 Score: 60
Period size: 10 Copynumber: 4.6 Consensus size: 10
1910804 ATTTCATTTA
1910814 TTTATTTATT
1 TTTATTTATT
*
1910824 TTTCCTTTTATT
1 TTT--ATTTATT
1910836 TTTATTTATT
1 TTTATTTATT
*
1910846 TTTACTTATT
1 TTTATTTATT
1910856 TTTATT
1 TTTATT
1910862 CTTCATTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
10 23 0.72
12 9 0.28
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (10 bp):
TTTATTTATT
Found at i:1917358 original size:18 final size:19
Alignment explanation
Indices: 1917335--1917378 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
1917325 TTTTAGTTTC
1917335 ATTTTTATTCTT-ATTCTT
1 ATTTTTATTCTTCATTCTT
*
1917353 ATTTTTA-TCTTCATTTTT
1 ATTTTTATTCTTCATTCTT
*
1917371 ATATTTAT
1 ATTTTTAT
1917379 ATTTTTTTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.20, C:0.09, G:0.00, T:0.70
Consensus pattern (19 bp):
ATTTTTATTCTTCATTCTT
Found at i:1921759 original size:15 final size:15
Alignment explanation
Indices: 1921739--1921768 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
1921729 GCACTTGGAG
1921739 CACTCGAATGCAGCT
1 CACTCGAATGCAGCT
1921754 CACTCGAATGCAGCT
1 CACTCGAATGCAGCT
1921769 AAGGAATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.33, G:0.20, T:0.20
Consensus pattern (15 bp):
CACTCGAATGCAGCT
Found at i:1925157 original size:27 final size:27
Alignment explanation
Indices: 1925119--1925177 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
1925109 TTATAACAAC
*
1925119 ATTTTAATTGAGTGACT-TATTTATAAT
1 ATTTTAACTGAGTGA-TATATTTATAAT
1925146 ATTTTAACTGAGTGATATATTTATAAT
1 ATTTTAACTGAGTGATATATTTATAAT
*
1925173 TTTTT
1 ATTTT
1925178 TAATTAGAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 1 0.03
27 28 0.97
ACGTcount: A:0.32, C:0.03, G:0.10, T:0.54
Consensus pattern (27 bp):
ATTTTAACTGAGTGATATATTTATAAT
Found at i:1926059 original size:29 final size:29
Alignment explanation
Indices: 1926025--1926083 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
1926015 AATCCTCGTG
* * *
1926025 ATAAAAGTATT-ATAAAATAAATCTTATC
1 ATAAAAATATTAATAAAATAAAGCATATC
1926053 ATAAAAATATTAATAAAATAAAGCATATC
1 ATAAAAATATTAATAAAATAAAGCATATC
1926082 AT
1 AT
1926084 GACATATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 10 0.37
29 17 0.63
ACGTcount: A:0.58, C:0.07, G:0.03, T:0.32
Consensus pattern (29 bp):
ATAAAAATATTAATAAAATAAAGCATATC
Found at i:1928213 original size:4 final size:4
Alignment explanation
Indices: 1928204--1928231 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
1928194 AACAAAACTA
1928204 AAAT AAAT AAAT AAAT AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT
1928232 GGACAAAAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
AAAT
Found at i:1928407 original size:2 final size:2
Alignment explanation
Indices: 1928373--1928398 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1928363 AAAAATACGA
1928373 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
1928399 GCATATATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1929656 original size:5 final size:5
Alignment explanation
Indices: 1929611--1929640 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
1929601 AATTAAATTT
*
1929611 ATAAA ATGAA ATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA
1929641 TGTTAATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:1929872 original size:74 final size:74
Alignment explanation
Indices: 1929791--1930003 Score: 198
Period size: 74 Copynumber: 2.9 Consensus size: 74
1929781 ATTTTTTTTA
*
1929791 AAAAACTATATATTATATCAATTTTCCAAAAATGTTTTTTGTTAAAACTATATATTATA-TTTTC
1 AAAAACTATATAATATAT-AATTTTCCAAAAATGTTTTTTGTTAAAACTATATATTATAGTTTTC
1929855 AAAATGATTT
65 AAAATGATTT
* *
1929865 CAAAACTATATACTATATAATTTT-C-AAAATG----TT-TTAAAACTTATATATTGTATATAAG
1 AAAAACTATATAATATATAATTTTCCAAAAATGTTTTTTGTTAAAAC-TATATA---T-TAT-AG
*
1929923 TTTTCAAAAATGTTTT
60 TTTTC-AAAATGATTT
* * *
1929939 AAAAACTATATAATATAT-A-TTTCCAAAATATATTTTTTG--AAAACTATATACTATATTTTTC
1 AAAAACTATATAATATATAATTTTCCAAAA-ATGTTTTTTGTTAAAACTATATATTATAGTTTTC
1930000 AAAA
65 AAAA
1930004 ATATTTTCAA
Statistics
Matches: 115, Mismatches: 8, Indels: 35
0.73 0.05 0.22
Matches are distributed among these distances:
66 7 0.06
67 8 0.07
70 1 0.01
71 13 0.11
72 11 0.10
73 16 0.14
74 44 0.38
75 2 0.02
77 6 0.05
78 5 0.04
79 2 0.02
ACGTcount: A:0.44, C:0.08, G:0.04, T:0.44
Consensus pattern (74 bp):
AAAAACTATATAATATATAATTTTCCAAAAATGTTTTTTGTTAAAACTATATATTATAGTTTTCA
AAATGATTT
Found at i:1929940 original size:39 final size:34
Alignment explanation
Indices: 1929691--1930027 Score: 159
Period size: 38 Copynumber: 9.6 Consensus size: 34
1929681 AAAAAATATT
* *
1929691 TTTTAAAA-TATATA-T-TAT-A-TTTAAAAACG
1 TTTTAAAACTATATACTATATAATTTTCAAAATG
* *
1929720 TTTTCAAAACTATATATTATATAGTTTTCAAAAATG
1 TTTT-AAAACTATATACTATATAATTTTC-AAAATG
** ** *
1929756 ATTTTAAAA--ATAT--TATA-GCTTTTCAATTTT
1 -TTTTAAAACTATATACTATATAATTTTCAAAATG
*
1929786 TTTTAAAAAACTATATATTATATCAATTTTCCAAAAATG
1 TTTT--AAAACTATATACTATAT-AATTTT-C-AAAATG
1929825 TTTTTTGTTAAAACTATATA-T-TAT-ATTTTCAAAATG
1 ----TT-TTAAAACTATATACTATATAATTTTCAAAATG
*
1929861 ATTTCAAAACTATATACTATATAATTTTCAAAATG
1 -TTTTAAAACTATATACTATATAATTTTCAAAATG
*
1929896 TTTTAAAACTTATATATTGTATATAAGTTTTCAAAAATG
1 TTTTAAAAC-TATATA--CTATATAA-TTTTC-AAAATG
* * *
1929935 TTTTAAAAACTATATAATATAT-ATTTCCAAAATATATT
1 TTTT-AAAACTATATACTATATAATTTTC--AA-A-ATG
*
1929973 TTTTGAAAACTATATACTATAT--TTTTCAAAAATA
1 TTTT-AAAACTATATACTATATAATTTTC-AAAATG
*
1930007 TTTTCAAAAAT-TATACTATAT
1 TTTT-AAAACTATATACTATAT
1930028 TACTATAACA
Statistics
Matches: 247, Mismatches: 26, Indels: 66
0.73 0.08 0.19
Matches are distributed among these distances:
29 8 0.03
30 7 0.03
31 15 0.06
32 17 0.07
33 20 0.08
34 26 0.11
35 30 0.12
36 22 0.09
37 26 0.11
38 33 0.13
39 19 0.08
40 8 0.03
41 1 0.00
42 11 0.04
43 2 0.01
44 2 0.01
ACGTcount: A:0.43, C:0.08, G:0.04, T:0.46
Consensus pattern (34 bp):
TTTTAAAACTATATACTATATAATTTTCAAAATG
Found at i:1930906 original size:84 final size:83
Alignment explanation
Indices: 1930589--1931875 Score: 1311
Period size: 84 Copynumber: 15.5 Consensus size: 83
1930579 GACAAATTTA
* * * * * * * * *
1930589 TTGGCAGATAGCTCTTCTTGTCTTGAGCTATGCTGTAAATTTGATTTGCCTTTGAGTTGAGTGTA
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAA--TGATGTGCC-TTGAGCTGAGCGTA
* * * *
1930654 ATCGAACTCAAAGGTCCTCGG
63 GTCGAACTCGAAGGTCTTTGG
* * * * *
1930675 TTGGCAAATAGCTCTTCTCGACTTAAGCTATGCTGCAGATGATGTGCCTTGGAGCTGAGCGTGGT
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTT-GAGCTGAGCGTAGT
*
1930740 TGAACTCGAAGGTCTTTGG
65 CGAACTCGAAGGTCTTTGG
* * * *
1930759 TTAGCAGATAACCCTTTCTGGACTTAAGTTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAG
1 TTGGCAGATAACCC-TTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTT-GAGCTGAGCGTAG
*
1930824 TCGAACTGGAAGGTCTTTGG
64 TCGAACTCGAAGGTCTTTGG
*
1930844 TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCGTTGAGCTGAGCGTAGT
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC-TTGAGCTGAGCGTAGT
* *
1930909 CAAACTCAAAGGTCTTTGG
65 CGAACTCGAAGGTCTTTGG
* * * * * * * * * * * *
1930928 -TGACAGATAACCCTTCTAGCCTTGAGTTATGTTGTAAATGATATTCCCTCGAAGCTGAGTGTAA
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGAT-GTGCCTTG-AGCTGAGCGTAG
* **
1930992 TCGAAATCGGGGGTC--T--
64 TCGAACTCGAAGGTCTTTGG
* *
1931008 TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCGTTGAGCTAAGCGTAGT
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC-TTGAGCTGAGCGTAGT
* *
1931073 CGAACTCAAAGGTCTTTTG
65 CGAACTCGAAGGTCTTTGG
* * * * * *
1931092 TTGGCAGACAACCCTTCTAGACTTAAGTTGTGTTGCAAATGATATGCCTTAGAGCTGAGCGTAGT
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTT-GAGCTGAGCGTAGT
1931157 CGAACTCGAAGGTCTTTGG
65 CGAACTCGAAGGTCTTTGG
* * *
1931176 -TGACAGATAGCCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGAAGCTGAGCGTAGT
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTG-AGCTGAGCGTAGT
1931240 CGAACTCGAAGGTCTTTGG
65 CGAACTCGAAGGTCTTTGG
* * * * * * * * *
1931259 TTGGCAGATAACTCTTCTAGCCTTGAGTTATGCTGCAAATGATGTACCCTCGATGCTGAGTGTAA
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGT-GCCTTGA-GCTGAGCGTAG
1931324 TCGAACTCG-AGTGTC--T--
64 TCGAACTCGAAG-GTCTTTGG
*
1931340 TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGT
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTT-GAGCTGAGCGTAGT
*
1931405 CGAACGCGAAGGTCTTT-G
65 CGAACTCGAAGGTCTTTGG
* * * *
1931423 TTGACAGATAACCCTTCTTGACTTAAGTTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGT
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTT-GAGCTGAGCGTAGT
* *
1931488 CGAACTCGAATGTCATTGG
65 CGAACTCGAAGGTCTTTGG
* * * * * * *
1931507 -TGACAGATAACCCTTTTAGCCTTGAGTTATGCTGTAAATGATGTGCCTTGGAGCTGAGCGTAGT
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTT-GAGCTGAGCGTAGT
*
1931571 CGAACTCGAAGG--TAT--
65 CGAACTCGAAGGTCTTTGG
** * *
1931586 TTGGCAGATAGTCCTTCTCGACTTAAGCTATGCTGCAAATGATATGTCTTGGAGCTGAGCGTAGT
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTT-GAGCTGAGCGTAGT
*
1931651 CGAACTCAAAGGTCTTTGG
65 CGAACTCGAAGGTCTTTGG
* * * * * * *
1931670 TTGGCATATAACCCTTGTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGGAGCTAAGTGTAA
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG-CCT-TGAGCTGAGCGTAG
*
1931735 TCGAACTCGAGGGTC--T--
64 TCGAACTCGAAGGTCTTTGG
* *
1931751 TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTCGGAGCTGAGCGTAGT
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCT-TGAGCTGAGCGTAGT
*
1931816 CGAACTCGAAGGTATTTGG
65 CGAACTCGAAGGTCTTTGG
* * * * **
1931835 TTGGCAAATAACCCTTCTTGTCTTGAGCTATATTGCAAATG
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATG
1931876 TTGTCTTAAA
Statistics
Matches: 1000, Mismatches: 167, Indels: 70
0.81 0.14 0.06
Matches are distributed among these distances:
80 138 0.14
81 122 0.12
82 7 0.01
83 259 0.26
84 314 0.31
85 127 0.13
86 33 0.03
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.31
Consensus pattern (83 bp):
TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGAGCTGAGCGTAGTC
GAACTCGAAGGTCTTTGG
Found at i:1931078 original size:248 final size:247
Alignment explanation
Indices: 1930589--1931875 Score: 1322
Period size: 248 Copynumber: 5.2 Consensus size: 247
1930579 GACAAATTTA
* * * * * * * * *
1930589 TTGGCAGATAGCTCTTCTTGTCTTGAGCTATGCTGTAAATTTGATTTGCCTTTGAGTTGAGTGTA
1 TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAA--TGATATGCCTTGGAGCTGAGCGTA
* * * * * * * * *
1930654 ATCGAACTCAAAGGTCCTCGGTTGGCAAATAGCTCTTCTCGACTTAAGCTATGCTGCAGATGAT-
64 GTCGAACTCAAAGGTCTTTGG-TGACAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATA
* * * * ** * * *
1930718 GTGCCTTGGAGCTGAGCGTGGTTGAACTCGAAGGTCTTTGGTTAGCAGATAACCCTTTCTGGACT
128 TTCCCTCGAAGCTGAGCGTAATCGAACTCGAAGGTC-TT--TTGGCAGATAACCC-TTCTAGACT
* *
1930783 TAAGTTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTGGAAGGTCTTTGG
189 TAAGTTATGCTGCAAATGATGTGCCTT-GAGCTGAGCGTAGTCGAACTCGAAGGTCTTT-G
*
1930844 TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCGTT-GAGCTGAGCGTAG
1 TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCC-TTGGAGCTGAGCGTAG
* * * * * *
1930908 TCAAACTCAAAGGTCTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGTTGTAAATGATATT
65 TCGAACTCAAAGGTCTTTGGTGACAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATT
* * ** * * *
1930973 CCCTCGAAGCTGAGTGTAATCGAAATCGGGGGTC-TTTGGCAGATAGCCCTTCTCGACTTAAGCT
130 CCCTCGAAGCTGAGCGTAATCGAACTCGAAGGTCTTTTGGCAGATAACCCTTCTAGACTTAAGTT
* *
1931037 ATGCTGCAAATGATGTGCCGTTGAGCTAAGCGTAGTCGAACTCAAAGGTCTTTTG
195 ATGCTGCAAATGATGTGCC-TTGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTG
* * * * * * *
1931092 TTGGCAGACAACCCTTCTAGACTTAAGTTGTGTTGCAAATGATATGCCTTAGAGCTGAGCGTAGT
1 TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGT
* * * *
1931157 CGAACTCGAAGGTCTTTGGTGACAGATAGCCCTTCTCGACTTAAGTTATGCTGCAAATGAT-GTG
66 CGAACTCAAAGGTCTTTGGTGACAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATTC
* * * * *
1931221 CCTTGAAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACTCTTCTAGCCTTGAG
131 CCTCGAAGCTGAGCGTAATCGAACTCGAAGGTC-TT--TTGGCAGATAACCCTTCTAGACTTAAG
* * * *
1931286 TTATGCTGCAAATGATGTACCCTCGATGCTGAGTGTAATCGAACTCG-AGTGTC--T-
193 TTATGCTGCAAATGATGT-GCCTTGA-GCTGAGCGTAGTCGAACTCGAAG-GTCTTTG
*
1931340 TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGT
1 TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGT
* * * * *
1931405 CGAACGCGAAGGTCTTTGTTGACAGATAACCCTTCTTGACTTAAGTTATGCTGCAAATGATA-TG
66 CGAACTCAAAGGTCTTTGGTGACAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATTC
* * * * * * * * *
1931469 CCTTGGAGCTGAGCGTAGTCGAACTCGAATGTCATTGGTGACAGATAACCCTTTTAGCCTTGAGT
131 CCTCGAAGCTGAGCGTAATCGAACTCGAAGGTC-TT-TTGGCAGATAACCCTTCTAGACTTAAGT
* *
1931534 TATGCTGTAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGG--TAT-
194 TATGCTGCAAATGATGTGCCTT-GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTG
* *
1931586 TTGGCAGATAGTCCTTCTCGACTTAAGCTATGCTGCAAATGATATGTCTTGGAGCTGAGCGTAGT
1 TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGT
* * * * *
1931651 CGAACTCAAAGGTCTTTGGTTGGCATATAACCCTTGTCGACTTAAGTTATGCTGCAAATGATGTG
66 CGAACTCAAAGGTCTTTGG-TGACAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATT
* * * * * * *
1931716 CCCTCGGAGCTAAGTGTAATCGAACTCGAGGGTC-TTTGGCAGATAGCCCTTCTCGACTTAAGCT
130 CCCTCGAAGCTGAGCGTAATCGAACTCGAAGGTCTTTTGGCAGATAACCCTTCTAGACTTAAGTT
* *
1931780 ATGCTGCAAATGATGTGCCTCGGAGCTGAGCGTAGTCGAACTCGAAGGTATTTGG
195 ATGCTGCAAATGATGTGCCT-TGAGCTGAGCGTAGTCGAACTCGAAGGTCTTT-G
* * * * * **
1931835 TTGGCAAATAACCCTTCTTGTCTTGAGCTATATTGCAAATG
1 TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATG
1931876 TTGTCTTAAA
Statistics
Matches: 869, Mismatches: 139, Indels: 54
0.82 0.13 0.05
Matches are distributed among these distances:
245 66 0.08
246 102 0.12
247 115 0.13
248 341 0.39
249 52 0.06
251 45 0.05
252 52 0.06
253 60 0.07
254 2 0.00
255 34 0.04
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.31
Consensus pattern (247 bp):
TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGT
CGAACTCAAAGGTCTTTGGTGACAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATTC
CCTCGAAGCTGAGCGTAATCGAACTCGAAGGTCTTTTGGCAGATAACCCTTCTAGACTTAAGTTA
TGCTGCAAATGATGTGCCTTGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTG
Found at i:1931469 original size:331 final size:328
Alignment explanation
Indices: 1930589--1931835 Score: 1499
Period size: 331 Copynumber: 3.8 Consensus size: 328
1930579 GACAAATTTA
* * * * * * * * * *
1930589 TTGGCAGATAGCTCTTCTTGTCTTGAGCTATGCTGTAAATTTGATTTGCCTTTGAGTTGAGTGTA
1 TTGGCAGATAACTCTTCTAGCCTTGAGTTATGCTGCAAA--TGATATACCCTCGAGCTGAGTGTA
* * * *
1930654 ATCGAACTCAAAGGTCCTCGGTTGGCAAATAGCTCTTCTCGACTTAAGCTATGCTGCAGATGATG
64 ATCGAACTC-GAGGT-CT---TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATG
* * * *
1930719 TGCCTTGGAGCTGAGCGTGGTTGAACTCGAAGGTCTTTGGTT-AGCAGATAACCCTTTCTGGACT
124 TGCCTTGGAGCTAAGCGTAGTCGAACTCGAAGGTCTTT-GTTGA-CAGATAACCC-TTCTAGACT
* *
1930783 TAAGTTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTGGAAGGTCTTTGGTTGG
186 TAAGTTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG-TGA
* *
1930848 CAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCAAA
250 CAGATAGCCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCC-TTGAGCTGAGCGTAGTCGAA
*
1930913 CTCAAAGGTCTTTGG
314 CTCGAAGGTCTTTGG
* * * * *
1930928 -TGACAGATAACCCTTCTAGCCTTGAGTTATGTTGTAAATGATATTCCCTCGAAGCTGAGTGTAA
1 TTGGCAGATAACTCTTCTAGCCTTGAGTTATGCTGCAAATGATATACCCTCG-AGCTGAGTGTAA
* *
1930992 TCGAAATCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCG
65 TCGAACTC-GAGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC-
* * *
1931057 TT-GAGCTAAGCGTAGTCGAACTCAAAGGTCTTTTGTTGGCAGACAACCCTTCTAGACTTAAGTT
128 TTGGAGCTAAGCGTAGTCGAACTCGAAGGTC-TTTGTTGACAGATAACCCTTCTAGACTTAAGTT
* * *
1931121 GTGTTGCAAATGATATGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTGACAGATAG
192 ATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTGACAGATAG
1931186 CCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGAAGCTGAGCGTAGTCGAACTCGAAG
257 CCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTG-AGCTGAGCGTAGTCGAACTCGAAG
1931251 GTCTTTGG
321 GTCTTTGG
*
1931259 TTGGCAGATAACTCTTCTAGCCTTGAGTTATGCTGCAAATGATGTACCCTCGATGCTGAGTGTAA
1 TTGGCAGATAACTCTTCTAGCCTTGAGTTATGCTGCAAATGATATACCCTCGA-GCTGAGTGTAA
1931324 TCGAACTCGAGTGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCT
65 TCGAACTCGAG-GTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCT
* * *
1931389 TGGAGCTGAGCGTAGTCGAACGCGAAGGTCTTTGTTGACAGATAACCCTTCTTGACTTAAGTTAT
129 TGGAGCTAAGCGTAGTCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTAGACTTAAGTTAT
* * *
1931454 GCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAATGTCATTGGTGACAGATAACC
194 GCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTGACAGATAGCC
* * * * *
1931519 CTTTTAGCCTTGAGTTATGCTGTAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGG-
259 CTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTT-GAGCTGAGCGTAGTCGAACTCGAAGGT
*
1931583 -TAT--
323 CTTTGG
* * * * * ** * * * *
1931586 TTGGCAGAT-AGTCCTTCTCGACTTAAGCTATGCTGCAAATGATATGTCTTGGAGCTGAGCGTAG
1 TTGGCAGATAACT-CTTCTAGCCTTGAGTTATGCTGCAAATGATATACCCTCGAGCTGAGTGTAA
* * * * *
1931650 TCGAACTCAAAGGTCTTTGGTTGGCATATAACCCTTGTCGACTTAAGTTATGCTGCAAATGATGT
65 TCGAACTC-GAGGTC--T--TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGT
* * * * * *
1931715 GCCCTCGGAGCTAAGTGTAATCGAACTCGAGGGTCTTTG--G-CAGATAGCCCTTCTCGACTTAA
125 G-CCTTGGAGCTAAGCGTAGTCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTAGACTTAA
* * * *
1931777 GCTATGCTGCAAATGATGTGCCTCGGAGCTGAGCGTAGTCGAACTCGAAGGTATTTGGT
189 GTTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGT
1931836 TGGCAAATAA
Statistics
Matches: 800, Mismatches: 91, Indels: 45
0.85 0.10 0.05
Matches are distributed among these distances:
326 22 0.03
327 42 0.05
328 74 0.09
329 3 0.00
330 45 0.06
331 259 0.32
332 206 0.26
333 81 0.10
334 5 0.01
336 11 0.01
337 21 0.03
338 31 0.04
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (328 bp):
TTGGCAGATAACTCTTCTAGCCTTGAGTTATGCTGCAAATGATATACCCTCGAGCTGAGTGTAAT
CGAACTCGAGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTG
GAGCTAAGCGTAGTCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTAGACTTAAGTTATGC
TGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTGACAGATAGCCCT
TCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGAGCTGAGCGTAGTCGAACTCGAAGGTCTT
TGG
Found at i:1936989 original size:6 final size:6
Alignment explanation
Indices: 1936978--1937016 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
1936968 GAAATGGGGG
* * *
1936978 AAAAAT AAAAAT AAAAAT AAAAGT GATAAT AAAAAT AAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAA
1937017 TAAAACATAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.18
Consensus pattern (6 bp):
AAAAAT
Found at i:1937135 original size:2 final size:2
Alignment explanation
Indices: 1937128--1937152 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1937118 AGAGAAAAGA
1937128 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
1937153 TATATATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:1937157 original size:2 final size:2
Alignment explanation
Indices: 1937152--1937197 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
1937142 ACACACACAC
1937152 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1937194 AT AT
1 AT AT
1937198 GATAATAATA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1938514 original size:35 final size:32
Alignment explanation
Indices: 1938450--1938525 Score: 82
Period size: 35 Copynumber: 2.3 Consensus size: 32
1938440 TCAAAACTAT
** *
1938450 ATATTATATAGTTTTCAAAAATGATTTTAAAA
1 ATATTATATAGTTTTCAAAAAAAAATTTAAAA
1938482 ATATTATATAAGCTTTTCAAAAAAAAAATTTAAAA
1 ATATTATAT-AG-TTTTC-AAAAAAAAATTTAAAA
1938517 ACTA-TATAT
1 A-TATTATAT
1938526 TATATCAATT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
32 9 0.24
33 2 0.05
34 5 0.14
35 19 0.51
36 2 0.05
ACGTcount: A:0.51, C:0.05, G:0.04, T:0.39
Consensus pattern (32 bp):
ATATTATATAGTTTTCAAAAAAAAATTTAAAA
Found at i:1938603 original size:39 final size:37
Alignment explanation
Indices: 1938560--1938681 Score: 99
Period size: 35 Copynumber: 3.2 Consensus size: 37
1938550 TTTTGTTAAA
*
1938560 ACTATATATTATATTTTCAAAATGATTTCAAAACTATAT
1 ACTATATA-TATATTTTCAAAATG-TTTAAAAACTATAT
*
1938599 AC--TATATA-ATTTTCAAAATGTTTTAAAACT-TAT
1 ACTATATATATATTTTCAAAATGTTTAAAAACTATAT
* * * *
1938632 ATTTTGTATATAAGTTTTCAAAAACGTTTTAAAAACTATAT
1 ACTATATATAT-A-TTTTC-AAAATG-TTTAAAAACTATAT
*
1938673 AATATATAT
1 ACTATATAT
1938682 TTCCAAAATA
Statistics
Matches: 67, Mismatches: 8, Indels: 14
0.75 0.09 0.16
Matches are distributed among these distances:
33 4 0.06
34 9 0.13
35 17 0.25
36 2 0.03
37 5 0.07
38 5 0.07
39 7 0.10
40 9 0.13
41 9 0.13
ACGTcount: A:0.43, C:0.08, G:0.04, T:0.44
Consensus pattern (37 bp):
ACTATATATATATTTTCAAAATGTTTAAAAACTATAT
Found at i:1938612 original size:147 final size:140
Alignment explanation
Indices: 1938398--1938750 Score: 364
Period size: 146 Copynumber: 2.5 Consensus size: 140
1938388 ATGTTTCAAA
* * *
1938398 AAAAAATATTTTTT--AAACTATATATTATA-TTT-AAAAACGTTTTCAAAACTATATATTATAT
1 AAAATATATTTTTTGAAAACTATATATTATATTTTCAAAAA-GATTTCAAAACTATATACTATAT
*
1938459 AGTTTTCAAAAATGATTTTAAAA-ATA-T-TATATAAGCTTTTCAAAAAAAAAATTTAAAAACTA
65 AATTTTC-AAAATG-TTTTAAAATATATTGTATATAAG-TTTTC--AAAAAAAATTTAAAAACTA
*
1938521 TATATTATATCAATTTTCC
125 TATAATATAT--A-TTTCC
* *
1938540 AAAA-ATGTTTTTTTGTTAAAACTATATATTATATTTTCAAAATGATTTCAAAACTATATACTAT
1 AAAATAT-ATTTTTTG--AAAACTATATATTATATTTTCAAAAAGATTTCAAAACTATATACTAT
***
1938604 ATAATTTTCAAAATGTTTTAAAACTTATATTTTGTATATAAGTTTTCAAAAACGTTTTAAAAACT
63 ATAATTTTCAAAATGTTTTAAAA--TATA--TTGTATATAAGTTTTCAAAAAAAATTTAAAAACT
1938669 ATATAATATATATTTCC
124 ATATAATATATATTTCC
* * *
1938686 AAAATATATTTTTTGAAAACTATATACTATATTTTTCAAAAACATTTTCAAAAAT-TATACTATA
1 AAAATATATTTTTTGAAAACTATATATTATA-TTTTCAAAAAGA-TTTCAAAACTATATACTATA
1938750 T
64 T
1938751 TATTATAACA
Statistics
Matches: 180, Mismatches: 14, Indels: 31
0.80 0.06 0.14
Matches are distributed among these distances:
141 2 0.01
142 10 0.06
144 15 0.08
145 28 0.16
146 46 0.26
147 33 0.18
148 7 0.04
149 25 0.14
151 6 0.03
152 8 0.04
ACGTcount: A:0.45, C:0.08, G:0.03, T:0.43
Consensus pattern (140 bp):
AAAATATATTTTTTGAAAACTATATATTATATTTTCAAAAAGATTTCAAAACTATATACTATATA
ATTTTCAAAATGTTTTAAAATATATTGTATATAAGTTTTCAAAAAAAATTTAAAAACTATATAAT
ATATATTTCC
Found at i:1938679 original size:37 final size:35
Alignment explanation
Indices: 1938407--1938727 Score: 154
Period size: 37 Copynumber: 8.9 Consensus size: 35
1938397 AAAAAAATAT
* *
1938407 TTTTTAAACTATAT-AT-TAT-A-TTT-AAAAACG
1 TTTTAAAACTATATAATATATAATTTTCAAAAATG
* *
1938437 TTTTCAAAACTATATATTATATAGTTTTCAAAAATG
1 TTTT-AAAACTATATAATATATAATTTTCAAAAATG
**
1938473 ATTTTAAAA--ATAT--TATATAAGCTTTTCAAAAAAAAAA
1 -TTTTAAAACTATATAATATATAA--TTTTC---AAAAATG
* *
1938510 TTTAAAAACTATATATTATATCAATTTTCCAAAAATG
1 TTTTAAAACTATATAATATAT-AATTTT-CAAAAATG
1938547 TTTTTTTGTTAAAACTATAT-AT-TAT-ATTTTC-AAAATG
1 -----TT-TTAAAACTATATAATATATAATTTTCAAAAATG
* *
1938584 ATTTCAAAACTATATACTATATAATTTTC-AAAATG
1 -TTTTAAAACTATATAATATATAATTTTCAAAAATG
** *
1938619 TTTTAAAACTTATATTTTGTATATAAGTTTTCAAAAACG
1 TTTTAAAAC-TATA--TAATATATAA-TTTTCAAAAATG
* *
1938658 TTTTAAAAACTATATAATATAT-ATTTCCAAAATATATT
1 TTTT-AAAACTATATAATATATAATTTTC-AAA-A-ATG
*
1938696 TTTTGAAAACTATATACTATAT--TTTTCAAAAA
1 TTTT-AAAACTATATAATATATAATTTTCAAAAA
1938728 CATTTTCAAA
Statistics
Matches: 228, Mismatches: 27, Indels: 68
0.71 0.08 0.21
Matches are distributed among these distances:
30 4 0.02
31 9 0.04
32 18 0.08
33 6 0.03
34 21 0.09
35 24 0.11
36 24 0.11
37 39 0.17
38 31 0.14
39 22 0.10
40 11 0.05
41 5 0.02
42 3 0.01
43 11 0.05
ACGTcount: A:0.44, C:0.08, G:0.04, T:0.44
Consensus pattern (35 bp):
TTTTAAAACTATATAATATATAATTTTCAAAAATG
Found at i:1941312 original size:16 final size:16
Alignment explanation
Indices: 1941260--1941314 Score: 56
Period size: 18 Copynumber: 3.2 Consensus size: 16
1941250 CATTTGGGAC
*
1941260 TAAAATAAAATGCACAT
1 TAAAATAAAATG-AAAT
*
1941277 TAAATATAAAGACCGAAAT
1 TAAA-ATAAA-A-TGAAAT
1941296 TAAAATAAAATGAAAT
1 TAAAATAAAATGAAAT
1941312 TAA
1 TAA
1941315 TATGTAAACT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
16 8 0.25
17 5 0.16
18 10 0.31
19 8 0.25
20 1 0.03
ACGTcount: A:0.62, C:0.07, G:0.07, T:0.24
Consensus pattern (16 bp):
TAAAATAAAATGAAAT
Found at i:1943164 original size:136 final size:136
Alignment explanation
Indices: 1942985--1943293 Score: 501
Period size: 136 Copynumber: 2.3 Consensus size: 136
1942975 TCTTCGTTTT
* * ** *
1942985 GATGAGTTCTTCTCATTATGAACTCTTCACTGGAAATGTTGATCCATCAAGCGAGGTGTCACTGA
1 GATGAGTTCTTCTCATTATGAACTCTCCATTGGAAATACTGATCCATCAAGCAAGGTGTCACTGA
* *
1943050 TTCGAAATGTTGTGAATCGAGTGATAAGTCGAACAAGCTCTTCTCATTATGAACTTCTTCTCCCT
66 TTCAAAATGTCGTGAATCGAGTGATAAGTCGAACAAGCTCTTCTCATTATGAACTTCTTCTCCCT
1943115 CTGTCG
131 CTGTCG
* *
1943121 GATGAGTTCTTCTCATTATGAACTCTCCATTAGAAATACTGATCCTTCAAGCAAGGTGTCACTGA
1 GATGAGTTCTTCTCATTATGAACTCTCCATTGGAAATACTGATCCATCAAGCAAGGTGTCACTGA
* *
1943186 TTCAAAATGTCGTGAATCTAGTGATAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCTCCCT
66 TTCAAAATGTCGTGAATCGAGTGATAAGTCGAACAAGCTCTTCTCATTATGAACTTCTTCTCCCT
1943251 CTGTCG
131 CTGTCG
* *
1943257 AATGAGTTCTTCTCATTATGAACTCTCAATTGGAAAT
1 GATGAGTTCTTCTCATTATGAACTCTCCATTGGAAAT
1943294 GCTGGTTCAC
Statistics
Matches: 159, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
136 159 1.00
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (136 bp):
GATGAGTTCTTCTCATTATGAACTCTCCATTGGAAATACTGATCCATCAAGCAAGGTGTCACTGA
TTCAAAATGTCGTGAATCGAGTGATAAGTCGAACAAGCTCTTCTCATTATGAACTTCTTCTCCCT
CTGTCG
Found at i:1944199 original size:20 final size:20
Alignment explanation
Indices: 1944170--1944253 Score: 74
Period size: 19 Copynumber: 4.4 Consensus size: 20
1944160 AACCCTCCTT
*
1944170 TTTCTCTTTTCATTTTTTCA
1 TTTCTTTTTTCATTTTTTCA
1944190 TTTCTTTTTTTCA-TTTTTCA
1 TTTC-TTTTTTCATTTTTTCA
1944210 -TT-TTTTTTCATTTTTT--
1 TTTCTTTTTTCATTTTTTCA
*
1944226 TTTCATTTTTT-TTCTTTTTCA
1 TTTC-TTTTTTCAT-TTTTTCA
1944247 TTT-TTTT
1 TTTCTTTT
1944254 ATCTTTTTAT
Statistics
Matches: 54, Mismatches: 2, Indels: 17
0.74 0.03 0.23
Matches are distributed among these distances:
17 10 0.19
18 6 0.11
19 17 0.31
20 11 0.20
21 10 0.19
ACGTcount: A:0.08, C:0.13, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTCTTTTTTCATTTTTTCA
Found at i:1944202 original size:21 final size:20
Alignment explanation
Indices: 1944176--1944253 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 20
1944166 CCTTTTTCTC
1944176 TTTTCATTTTTTCATTTCTTT
1 TTTTCATTTTTTCATTT-TTT
1944197 TTTTCA-TTTTTCA--TTTT
1 TTTTCATTTTTTCATTTTTT
*
1944214 TTTTCATTTTTT-TTTCATTTT
1 TTTTCATTTTTTCATT--TTTT
1944235 TTTTC--TTTTTCATTTTTT
1 TTTTCATTTTTTCATTTTTT
1944253 T
1 T
1944254 ATCTTTTTAT
Statistics
Matches: 49, Mismatches: 2, Indels: 15
0.74 0.03 0.23
Matches are distributed among these distances:
17 9 0.18
18 11 0.22
19 5 0.10
20 9 0.18
21 15 0.31
ACGTcount: A:0.09, C:0.12, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTTCATTTTTTCATTTTTT
Found at i:1944208 original size:28 final size:27
Alignment explanation
Indices: 1944168--1944253 Score: 95
Period size: 28 Copynumber: 3.1 Consensus size: 27
1944158 CAAACCCTCC
1944168 TTTTTC-TCTTTTCATTTTTTCATTTCTT
1 TTTTTCAT-TTTTCATTTTTTCATTT-TT
1944196 TTTTTCATTTTTCATTTTTTTTCA-TTTT
1 TTTTTCATTTTTCA--TTTTTTCATTTTT
**
1944224 TTTTTCATTTTTTTTCTTTTTCATTTTT
1 TTTTTCATTTTTCAT-TTTTTCATTTTT
1944252 TT
1 TT
1944254 ATCTTTTTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
26 1 0.02
27 7 0.14
28 32 0.63
29 3 0.06
30 8 0.16
ACGTcount: A:0.08, C:0.13, G:0.00, T:0.79
Consensus pattern (27 bp):
TTTTTCATTTTTCATTTTTTCATTTTT
Found at i:1944217 original size:11 final size:11
Alignment explanation
Indices: 1944182--1944238 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
1944172 TCTCTTTTCA
1944182 TTTTTTCATTT
1 TTTTTTCATTT
* *
1944193 CTTTTT--TTC
1 TTTTTTCATTT
*
1944202 ATTTTTCA-TT
1 TTTTTTCATTT
1944212 TTTTTTCATTT
1 TTTTTTCATTT
1944223 TTTTTTCATTT
1 TTTTTTCATTT
1944234 TTTTT
1 TTTTT
1944239 CTTTTTCATT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
9 7 0.18
10 8 0.21
11 23 0.61
ACGTcount: A:0.09, C:0.11, G:0.00, T:0.81
Consensus pattern (11 bp):
TTTTTTCATTT
Found at i:1944253 original size:10 final size:10
Alignment explanation
Indices: 1944182--1944244 Score: 69
Period size: 10 Copynumber: 6.3 Consensus size: 10
1944172 TCTCTTTTCA
1944182 TTTTTTCATT
1 TTTTTTCATT
1944192 TCTTTTT--TT
1 T-TTTTTCATT
*
1944201 CATTTTTCATT
1 -TTTTTTCATT
1944212 TTTTTTCATTT
1 TTTTTTCA-TT
1944223 TTTTTTCATT
1 TTTTTTCATT
1944233 TTTTTTC-TT
1 TTTTTTCATT
1944242 TTT
1 TTT
1944245 CATTTTTTTA
Statistics
Matches: 46, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
9 12 0.26
10 17 0.37
11 17 0.37
ACGTcount: A:0.08, C:0.11, G:0.00, T:0.81
Consensus pattern (10 bp):
TTTTTTCATT
Found at i:1944260 original size:16 final size:16
Alignment explanation
Indices: 1944194--1944265 Score: 74
Period size: 16 Copynumber: 4.1 Consensus size: 16
1944184 TTTTCATTTC
1944194 TTTTTTTCATTTTTCAT
1 TTTTTTTC-TTTTTCAT
1944211 TTTTTTTCATTTTTTTTTCAT
1 TTTTTTTC-----TTTTTCAT
1944232 TTTTTTTCTTTTTCAT
1 TTTTTTTCTTTTTCAT
1944248 TTTTTTATCTTTTT-AT
1 TTTTTT-TCTTTTTCAT
1944264 TT
1 TT
1944266 GTTCCCTTTT
Statistics
Matches: 49, Mismatches: 1, Indels: 11
0.80 0.02 0.18
Matches are distributed among these distances:
16 18 0.37
17 15 0.31
21 16 0.33
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTTTTCTTTTTCAT
Done.