genome.fa.s8009.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008009.1 Hibiscus syriacus cultivar Beakdansim tig00110471_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  287486

Tables:   1   

This is table  1  of  1  ( 111 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4139--4186	21	2.3	21	92	0	78	43	12	16	27	1.84
7145--7207	23	2.7	24	78	4	67	47	9	19	23	1.78
9827--9867	20	2.0	20	85	0	55	39	7	0	53	1.29
10090--10137	22	2.2	22	84	0	60	16	12	18	52	1.75
19412--19682	83	3.2	83	85	1	389	21	19	26	32	1.97
19684--19774	28	3.1	28	78	17	94	34	9	17	38	1.83
19672--19790	33	3.8	32	84	11	149	32	10	20	36	1.86
19845--19948	37	2.8	36	86	2	136	42	16	19	22	1.89
20071--21163	106	10.3	106	96	0	1902	22	18	25	33	1.97
26509--27227	106	6.8	106	97	0	1305	22	18	25	33	1.97
35726--35798	30	2.4	30	95	0	128	32	24	17	24	1.97
35784--35876	31	3.0	31	79	3	98	34	21	17	26	1.95
38709--38798	23	3.9	23	83	0	117	27	18	24	28	1.98
40762--40828	27	2.5	27	95	4	118	29	14	11	43	1.82
40994--41027	15	2.2	16	89	5	52	32	5	0	61	1.20
51770--51795	12	2.2	12	100	0	52	0	50	15	34	1.45
55689--56024	20	16.6	20	78	11	294	38	24	18	18	1.93
55750--56021	60	4.5	61	83	7	331	38	24	18	18	1.93
56581--56652	20	3.6	19	81	5	81	51	19	18	11	1.75
56670--56810	19	7.8	19	71	17	104	13	22	19	44	1.85
56687--56743	14	3.7	14	70	20	51	10	22	22	43	1.84
56670--56761	33	2.8	33	96	0	175	10	21	21	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56731--56801	20	3.6	19	81	5	79	15	23	19	40	1.90
58413--58791	94	4.1	93	94	1	634	21	12	18	47	1.81
58413--58791	187	2.0	187	93	2	654	21	12	18	47	1.81
58855--58947	19	4.8	19	85	5	107	46	23	18	11	1.82
58979--59061	20	4.2	20	85	0	112	21	16	20	40	1.91
58975--59052	40	2.0	40	92	0	129	21	15	19	43	1.87
60922--61002	33	2.4	34	85	4	110	46	18	20	13	1.83
60987--61034	25	1.9	25	95	0	87	45	14	22	16	1.84
61043--61149	19	5.8	19	79	12	134	14	21	17	45	1.85
61049--61171	33	3.5	33	81	11	147	14	22	17	44	1.86
61043--61149	38	2.9	38	82	12	152	14	21	17	45	1.85
61190--61225	14	2.6	14	90	0	54	30	0	22	47	1.52
61325--61409	33	2.5	33	90	1	125	44	18	22	14	1.85
61435--61552	34	3.5	34	84	3	168	15	22	19	43	1.88
61524--61610	20	4.4	20	84	2	115	17	21	26	34	1.95
63749--63785	14	2.5	15	86	4	58	5	13	21	59	1.54
64855--64895	20	2.0	20	85	0	55	26	21	17	34	1.95
64863--65093	20	11.5	20	74	9	175	19	18	22	38	1.93
64891--64934	21	2.1	21	91	8	72	18	13	18	50	1.79
64855--65093	60	4.0	61	74	8	195	20	18	22	38	1.93
64863--65032	40	4.2	40	81	3	207	20	18	21	38	1.93
65081--65160	21	3.8	21	73	6	72	22	21	22	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65861--65892	2	16.0	2	93	0	55	46	3	0	50	1.17
101253--101301	24	2.0	24	84	0	62	57	0	4	38	1.18
101308--101361	21	2.4	22	84	12	65	51	0	7	40	1.30
101637--101725	39	2.3	39	75	11	92	46	4	15	33	1.66
103298--103347	25	2.0	25	96	0	91	22	22	12	44	1.85
107304--107353	25	2.0	25	96	0	91	22	22	12	44	1.85
109389--109416	14	2.0	14	100	0	56	21	35	21	21	1.96
117075--117175	43	2.3	43	93	0	166	26	16	25	30	1.97
117572--117626	24	2.1	28	84	15	75	1	27	14	56	1.49
120623--120661	20	2.0	20	89	0	60	69	20	2	7	1.26
122573--122973	200	2.0	200	99	0	786	23	21	14	39	1.91
124974--125000	2	13.5	2	100	0	54	51	0	0	48	1.00
128013--128186	59	3.0	59	80	7	185	39	6	22	32	1.79
130435--130540	52	2.0	53	94	5	189	27	19	30	22	1.98
131368--131395	13	2.2	13	100	0	56	35	14	0	50	1.43
135884--135920	15	2.5	15	100	0	74	24	43	27	5	1.76
141976--142001	13	2.0	13	100	0	52	46	15	23	15	1.83
146989--147014	3	8.7	3	100	0	52	34	34	30	0	1.58
149224--149314	3	29.7	3	84	8	121	32	3	1	62	1.18
149617--149950	144	2.3	144	80	5	352	32	19	25	22	1.98
150071--150135	29	2.2	28	82	12	78	16	10	10	61	1.56
151883--151941	12	5.0	12	74	12	59	47	18	15	18	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151878--151964	24	3.7	23	82	3	84	47	18	13	20	1.83
154395--154423	15	1.9	15	100	0	58	31	27	27	13	1.94
154394--154424	7	4.3	7	92	8	53	29	25	32	12	1.93
156524--156593	24	3.0	23	79	6	86	51	20	10	18	1.74
161150--161259	24	4.6	24	76	8	100	47	16	14	21	1.82
161184--161245	12	5.2	12	68	24	51	46	19	16	17	1.84
164919--164947	6	4.8	6	100	0	58	48	0	17	34	1.47
169476--169502	3	9.0	3	100	0	54	66	0	0	33	0.92
169709--169788	17	4.6	17	77	3	79	40	10	8	41	1.70
172493--172517	13	1.9	13	100	0	50	44	8	0	48	1.32
180753--180869	49	2.4	49	88	2	164	30	11	16	41	1.84
183974--186658	537	5.0	537	97	0	4949	35	16	16	32	1.91
188603--188634	17	1.9	17	93	6	57	50	15	15	18	1.79
195562--195642	20	3.9	20	75	15	74	16	23	30	29	1.96
203466--203551	21	4.1	20	76	14	66	17	26	32	23	1.96
221111--221435	83	4.0	83	89	3	457	41	4	12	42	1.62
222459--222578	40	2.9	42	83	6	138	31	17	22	28	1.97
222459--222620	42	4.0	41	77	8	134	32	17	20	28	1.96
236637--236678	12	3.8	12	78	15	54	42	11	45	0	1.41
236637--236699	33	1.9	33	90	0	99	44	12	41	1	1.52
236637--236699	12	5.8	11	70	22	53	44	12	41	1	1.52
236631--236704	21	3.6	20	82	7	60	44	12	40	2	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
241927--242002	2	38.5	2	97	2	145	50	0	0	50	1.00
242167--242226	31	1.9	31	90	6	95	31	6	6	55	1.52
242677--242705	2	14.5	2	100	0	58	48	0	0	51	1.00
242720--242803	26	3.3	27	83	8	104	36	0	2	60	1.10
242718--242933	30	7.6	29	68	13	90	37	5	1	56	1.30
242822--242892	27	2.6	27	72	14	65	36	8	1	53	1.40
242877--242919	21	2.0	22	82	13	54	46	0	0	53	1.00
242971--243032	23	2.5	24	82	15	74	56	0	3	40	1.15
242971--243031	25	2.5	26	84	12	85	55	0	3	40	1.16
243124--243165	21	2.0	21	100	0	84	14	9	38	38	1.78
243405--243469	31	2.1	31	91	0	103	55	3	9	32	1.47
244838--244889	14	3.6	14	79	7	50	48	0	0	51	1.00
245568--245601	16	2.1	16	88	0	50	50	0	2	47	1.16
245642--245678	15	2.4	16	86	13	51	32	2	5	59	1.34
246141--246388	130	1.9	130	90	0	397	35	12	15	36	1.85
246787--246862	35	2.2	35	90	0	116	35	1	25	38	1.64
252572--252836	99	2.6	100	77	8	243	39	10	11	38	1.76
254603--254978	99	3.8	98	79	7	343	38	17	10	34	1.83
261867--261984	33	3.6	33	83	4	148	15	4	33	47	1.65
264693--264734	19	2.2	19	91	0	66	35	2	23	38	1.68
266523--266598	2	38.0	2	100	0	152	50	0	0	50	1.00
270440--270579	69	2.0	69	100	0	280	29	7	20	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
280724--280759	18	2.1	18	89	5	56	2	11	8	77	1.08

Tables:   1

The End!