Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000801.1 Hibiscus syriacus cultivar Beakdansim tig00001556_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103805

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
708--754
16
2.9
16
100
0
94
25
10
19
44
1.82
5365--5422
23
2.5
23
77
0
62
53
12
24
10
1.68
8269--8299
2
15.5
2
100
0
62
51
0
0
48
1.00
8984--9105
37
3.3
37
91
2
208
12
11
39
36
1.79
9782--9815
2
17.0
2
100
0
68
50
0
0
50
1.00
9872--9899
7
4.0
7
100
0
56
14
42
0
42
1.45
21681--21741
21
2.9
21
71
7
61
36
22
21
19
1.95
21643--21741
42
2.4
41
83
5
119
37
22
19
21
1.94
27177--27275
41
2.6
37
79
6
90
29
19
17
34
1.94
27209--27294
41
2.1
41
82
4
102
32
19
17
30
1.95
30733--30780
18
2.7
18
96
3
89
27
22
8
41
1.82
31155--31184
16
1.9
15
93
6
51
63
13
6
16
1.50
39771--39952
91
2.0
91
91
2
294
35
25
12
27
1.91
40130--40179
20
2.5
20
83
3
55
32
6
26
36
1.81
40110--40340
113
2.0
113
90
0
363
28
11
25
34
1.91
44026--44087
3
20.7
3
80
12
74
66
0
4
29
1.12
44129--44171
14
3.0
14
75
3
50
62
4
0
32
1.15
44207--44428
37
6.0
36
75
13
175
43
5
4
45
1.48
44267--44404
69
2.0
70
85
7
190
42
5
4
48
1.45
45138--45896
84
9.2
81
78
6
765
23
20
25
29
1.99
45075--45896
165
5.0
165
85
2
1103
23
20
24
30
1.99
47228--47345
59
2.0
59
100
0
236
30
13
20
35
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49341--49386
19
2.4
19
96
0
83
65
10
13
10
1.48
52499--52561
3
20.7
3
80
9
74
66
0
4
28
1.12
52499--52559
22
2.9
21
88
9
88
65
0
4
29
1.13
52740--52878
70
2.0
71
85
5
192
42
5
4
48
1.45
52680--52902
38
6.0
37
75
14
174
43
5
4
46
1.48
54643--54709
26
2.3
29
78
19
86
65
5
11
16
1.44
54660--54709
26
1.9
26
95
0
91
62
8
14
16
1.54
55238--55270
2
16.5
2
100
0
66
51
0
0
48
1.00
56263--56331
3
23.7
3
74
11
63
57
0
2
39
1.13
60375--60458
25
3.5
23
68
15
64
71
5
2
20
1.18
60383--60545
43
3.7
43
87
7
238
67
6
3
22
1.29
60384--60545
87
1.8
88
92
5
274
67
6
3
22
1.29
60511--60572
25
2.5
25
100
0
124
72
8
3
16
1.21
60978--61018
21
1.9
22
85
5
57
21
17
34
26
1.95
68152--68197
18
2.6
17
80
10
56
69
0
8
21
1.15
68866--68920
23
2.4
22
76
11
58
67
5
3
23
1.28
69741--69769
2
15.0
2
92
7
51
51
0
0
48
1.00
85553--85595
22
2.0
22
86
9
61
60
13
25
0
1.34
89138--89175
15
2.5
15
95
0
67
18
15
0
65
1.27
92494--92537
21
2.1
21
82
0
52
36
15
38
9
1.80
93536--93590
19
3.0
18
79
10
58
60
9
5
25
1.49
99861--99979
57
2.1
57
86
7
163
27
19
22
30
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
101815--101860
23
1.9
25
83
16
62
41
0
8
50
1.33
102181--102215
16
2.2
16
89
0
52
31
25
20
22
1.98
103051--103125
10
8.7
10
66
31
57
58
20
12
9
1.60
103055--103119
16
4.1
16
91
0
112
58
21
12
7
1.59

Tables:   1

The End!