Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008013.1 Hibiscus syriacus cultivar Beakdansim tig00110478_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1461402
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 6
Found at i:483239 original size:14 final size:13
Alignment explanation
Indices: 483204--483246 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
483194 ACAGTGTATA
* *
483204 AAAATATTTTAAT
1 AAAATATTTCAGT
483217 AAAATATTTCAGT
1 AAAATATTTCAGT
*
483230 AAAATCATTTCATT
1 AAAAT-ATTTCAGT
483244 AAA
1 AAA
483247 CATGTTTCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
13 16 0.62
14 10 0.38
ACGTcount: A:0.51, C:0.07, G:0.02, T:0.40
Consensus pattern (13 bp):
AAAATATTTCAGT
Found at i:483518 original size:14 final size:15
Alignment explanation
Indices: 483483--483515 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
483473 CCGAAATACA
483483 GAAATCAGATATCAG
1 GAAATCAGATATCAG
483498 GAAATCA-ATATTCAG
1 GAAATCAGATA-TCAG
483513 GAA
1 GAA
483516 TCACGTATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 3 0.18
15 14 0.82
ACGTcount: A:0.48, C:0.12, G:0.18, T:0.21
Consensus pattern (15 bp):
GAAATCAGATATCAG
Found at i:484297 original size:30 final size:29
Alignment explanation
Indices: 484276--484360 Score: 100
Period size: 28 Copynumber: 3.0 Consensus size: 29
484266 AATATCACCT
484276 TTTTCAAATTAAATTCTTAAAATAGCACA
1 TTTTCAAATTAAATTCTTAAAATAGCACA
** *
484305 TTTTCAAATTAAATTCCCAATATAGCAC-
1 TTTTCAAATTAAATTCTTAAAATAGCACA
** **
484333 TTTTTGAATTAAATTCCCAAAATAGCAC
1 TTTTCAAATTAAATTCTTAAAATAGCAC
484361 CCATTTCGAA
Statistics
Matches: 50, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
28 25 0.50
29 25 0.50
ACGTcount: A:0.41, C:0.18, G:0.05, T:0.36
Consensus pattern (29 bp):
TTTTCAAATTAAATTCTTAAAATAGCACA
Found at i:484343 original size:57 final size:56
Alignment explanation
Indices: 484264--484389 Score: 146
Period size: 57 Copynumber: 2.2 Consensus size: 56
484254 AATAATTACT
* * **
484264 AAAATATCACCTTTTTCAAATTAAATTCTTAAAATAGCA-CATTTTCAAATTAAATTCCC
1 AAAATAGCA-CTTTTT-GAATTAAATTCCCAAAATAGCACCA-TTTCAAATT-AATTCCC
* *
484323 AATATAGCACTTTTTGAATTAAATTCCCAAAATAGCACCCATTTCGAATTAATTCCC
1 AAAATAGCACTTTTTGAATTAAATTCCCAAAATAGCA-CCATTTCAAATTAATTCCC
484380 AAAATAGCAC
1 AAAATAGCAC
484390 CCATTTCGAA
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
57 35 0.60
58 14 0.24
59 9 0.16
ACGTcount: A:0.41, C:0.21, G:0.05, T:0.33
Consensus pattern (56 bp):
AAAATAGCACTTTTTGAATTAAATTCCCAAAATAGCACCATTTCAAATTAATTCCC
Found at i:484390 original size:29 final size:30
Alignment explanation
Indices: 484277--484420 Score: 147
Period size: 29 Copynumber: 5.0 Consensus size: 30
484267 ATATCACCTT
* **
484277 TTTCAAATTAAATTCTTAAAATAGCA--CA
1 TTTCGAATTAAATTCCCAAAATAGCACCCA
* * *
484305 TTTTCAAATTAAATTCCCAATATAGCA--CT
1 -TTTCGAATTAAATTCCCAAAATAGCACCCA
*
484334 TTTTGAATTAAATTCCCAAAATAGCACCCA
1 TTTCGAATTAAATTCCCAAAATAGCACCCA
484364 TTTCGAATT-AATTCCCAAAATAGCACCCA
1 TTTCGAATTAAATTCCCAAAATAGCACCCA
* * *
484393 TTTCGAATT-TATTCCTAAAATATCACCC
1 TTTCGAATTAAATTCCCAAAATAGCACCC
484421 GATCAACGGT
Statistics
Matches: 101, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
28 23 0.23
29 69 0.68
30 9 0.09
ACGTcount: A:0.39, C:0.22, G:0.05, T:0.34
Consensus pattern (30 bp):
TTTCGAATTAAATTCCCAAAATAGCACCCA
Found at i:484420 original size:58 final size:58
Alignment explanation
Indices: 484277--484420 Score: 143
Period size: 57 Copynumber: 2.5 Consensus size: 58
484267 ATATCACCTT
* ** * *
484277 TTTCAAATTAAATTCTTAAAATAGCA--CATTTTCAAATTAAATTCCCAATATAGCACT
1 TTTCGAATTAAATTCCCAAAATAGCACCCA-TTTCAAATTAAATTCCCAAAATAGCACA
* *
484334 TTTTGAATTAAATTCCCAAAATAGCACCCATTTCGAATT-AATTCCCAAAATAGCACCCA
1 TTTCGAATTAAATTCCCAAAATAGCACCCATTTCAAATTAAATTCCCAAAATAGCA--CA
* * *
484393 TTTCGAATT-TATTCCTAAAATATCACCC
1 TTTCGAATTAAATTCCCAAAATAGCACCC
484421 GATCAACGGT
Statistics
Matches: 72, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
57 37 0.51
58 24 0.33
59 11 0.15
ACGTcount: A:0.39, C:0.22, G:0.05, T:0.34
Consensus pattern (58 bp):
TTTCGAATTAAATTCCCAAAATAGCACCCATTTCAAATTAAATTCCCAAAATAGCACA
Found at i:484465 original size:18 final size:17
Alignment explanation
Indices: 484441--484488 Score: 60
Period size: 18 Copynumber: 2.8 Consensus size: 17
484431 CAACGGTCCA
484441 CGGTCAACGGGTCAGGT
1 CGGTCAACGGGTCAGGT
* *
484458 CGGGTCAACGGATCGGGT
1 C-GGTCAACGGGTCAGGT
*
484476 CGGTCAATGGGTC
1 CGGTCAACGGGTC
484489 GAGTCGGAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
17 11 0.42
18 15 0.58
ACGTcount: A:0.17, C:0.23, G:0.42, T:0.19
Consensus pattern (17 bp):
CGGTCAACGGGTCAGGT
Found at i:484494 original size:17 final size:17
Alignment explanation
Indices: 484441--484495 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
484431 CAACGGTCCA
484441 CGGTCAACGGGTC-AGGT
1 CGGTCAACGGGTCGA-GT
* *
484458 CGGGTCAACGGATCGGGT
1 C-GGTCAACGGGTCGAGT
*
484476 CGGTCAATGGGTCGAGT
1 CGGTCAACGGGTCGAGT
484493 CGG
1 CGG
484496 AACCGGTTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
17 17 0.55
18 14 0.45
ACGTcount: A:0.16, C:0.22, G:0.44, T:0.18
Consensus pattern (17 bp):
CGGTCAACGGGTCGAGT
Found at i:499135 original size:17 final size:17
Alignment explanation
Indices: 499108--499146 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
499098 AATTTACAAT
499108 TAATT-TAAATAATATC
1 TAATTATAAATAATATC
499124 TAATTATAAATAATATC
1 TAATTATAAATAATATC
499141 TAATTA
1 TAATTA
499147 ATTTGATTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (17 bp):
TAATTATAAATAATATC
Found at i:499303 original size:16 final size:16
Alignment explanation
Indices: 499282--499333 Score: 69
Period size: 16 Copynumber: 3.6 Consensus size: 16
499272 AACGATTTCG
499282 AACCGAATTAATCGTT
1 AACCGAATTAATCGTT
499298 AACCG-ATT--TCG--
1 AACCGAATTAATCGTT
499309 AACCGAATTAATCGTT
1 AACCGAATTAATCGTT
499325 AACCGAATT
1 AACCGAATT
499334 CCAAAAAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
11 5 0.16
12 3 0.10
13 3 0.10
14 3 0.10
15 3 0.10
16 14 0.45
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.29
Consensus pattern (16 bp):
AACCGAATTAATCGTT
Found at i:499307 original size:27 final size:27
Alignment explanation
Indices: 499270--499330 Score: 115
Period size: 27 Copynumber: 2.3 Consensus size: 27
499260 ATTCGGTTAA
499270 TTAA-CGATTTCGAACCGAATTAATCG
1 TTAACCGATTTCGAACCGAATTAATCG
499296 TTAACCGATTTCGAACCGAATTAATCG
1 TTAACCGATTTCGAACCGAATTAATCG
499323 TTAACCGA
1 TTAACCGA
499331 ATTCCAAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 4 0.12
27 30 0.88
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (27 bp):
TTAACCGATTTCGAACCGAATTAATCG
Found at i:513613 original size:12 final size:12
Alignment explanation
Indices: 513595--513626 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
513585 CTAGGAATAT
513595 CAGTAGAAACAA
1 CAGTAGAAACAA
*
513607 TAGTAGAAACAA
1 CAGTAGAAACAA
513619 CAGTAGAA
1 CAGTAGAA
513627 CTTGACACTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.19, T:0.12
Consensus pattern (12 bp):
CAGTAGAAACAA
Found at i:516764 original size:28 final size:28
Alignment explanation
Indices: 516680--516754 Score: 116
Period size: 28 Copynumber: 2.7 Consensus size: 28
516670 TTGTCGTTAC
516680 TTTTAAGCATTGGCTCGATGGTATAAAT-
1 TTTTAAGCATTGGCTCGATGGTAT-AATG
*
516708 TTTTCAGCATTGGCTCGATGGTATAATG
1 TTTTAAGCATTGGCTCGATGGTATAATG
*
516736 TTTTAAGCATTGACTCGAT
1 TTTTAAGCATTGGCTCGAT
516755 AACATAATGT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
27 3 0.07
28 40 0.93
ACGTcount: A:0.25, C:0.13, G:0.21, T:0.40
Consensus pattern (28 bp):
TTTTAAGCATTGGCTCGATGGTATAATG
Found at i:525764 original size:2 final size:2
Alignment explanation
Indices: 525759--525784 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
525749 ACACACACAC
525759 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
525785 TAAATTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:526819 original size:16 final size:16
Alignment explanation
Indices: 526794--526825 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
526784 TTTATATATA
526794 TATATAATGGATTATT
1 TATATAATGGATTATT
*
526810 TATATTATGGATTATT
1 TATATAATGGATTATT
526826 AGATTTTGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.53
Consensus pattern (16 bp):
TATATAATGGATTATT
Found at i:532087 original size:2 final size:2
Alignment explanation
Indices: 532080--532114 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
532070 TCTATCAATT
532080 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
532115 GGATAGAGCC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:533335 original size:20 final size:20
Alignment explanation
Indices: 533270--533519 Score: 220
Period size: 20 Copynumber: 12.5 Consensus size: 20
533260 CGATTTTCCA
* ** *
533270 AAATCGCAACGCGAATATGA
1 AAATCGCAACGTGAATCCGT
* *
533290 AAATCGCAACGCGAA-CACAT
1 AAATCGCAACGTGAATC-CGT
*
533310 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGTGAATCCGT
* * *
533330 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGTGAATCCGT
* * *
533350 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGTGAATCCGT
* * *
533370 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGTGAATCCGT
533390 AAATCGCAACGAT-AATCCGT
1 AAATCGCAACG-TGAATCCGT
* **
533410 AAATCGCAACGAGAATCTAT
1 AAATCGCAACGTGAATCCGT
533430 AAATCGCAACGAT-AATCCGT
1 AAATCGCAACG-TGAATCCGT
* *
533450 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGTGAATCCGT
533470 AAATCGCAACGAT-AATCCGT
1 AAATCGCAACG-TGAATCCGT
* *
533490 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGTGAATCCGT
*
533510 AAATCACAAC
1 AAATCGCAAC
533520 ACTGAAATTT
Statistics
Matches: 193, Mismatches: 29, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
20 192 0.99
21 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.17, T:0.20
Consensus pattern (20 bp):
AAATCGCAACGTGAATCCGT
Found at i:534435 original size:12 final size:12
Alignment explanation
Indices: 534418--534442 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
534408 ATATAATCCT
534418 GAAGAAGAAAAA
1 GAAGAAGAAAAA
534430 GAAGAAGAAAAA
1 GAAGAAGAAAAA
534442 G
1 G
534443 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:537025 original size:14 final size:14
Alignment explanation
Indices: 537006--537041 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
536996 ATTGTTTAAT
537006 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
537020 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
537034 TGATTTGT
1 TGATTTGT
537042 GTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:537172 original size:19 final size:19
Alignment explanation
Indices: 537148--537266 Score: 185
Period size: 19 Copynumber: 6.5 Consensus size: 19
537138 AAAATTGACT
537148 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
537167 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
537186 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
537205 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
537219 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
537238 ATCGCAATGCGAAAATGAAA
1 ATCGCAATGCG-AAATGAAA
537258 ATCGCAATG
1 ATCGCAATG
537267 GGAGAATCGC
Statistics
Matches: 92, Mismatches: 2, Indels: 11
0.88 0.02 0.10
Matches are distributed among these distances:
14 10 0.11
15 1 0.01
16 2 0.02
17 2 0.02
18 1 0.01
19 59 0.64
20 17 0.18
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:537227 original size:33 final size:36
Alignment explanation
Indices: 537148--537266 Score: 163
Period size: 33 Copynumber: 3.2 Consensus size: 36
537138 AAAATTGACT
537148 ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAAATCGCAA-GCG-AATGAAA
*
537186 ATCGCAATGCGAAATGAAAATCGCAA-CG-A-GAGA
1 ATCGCAATGCGAAATGAAAATCGCAAGCGAATGAAA
537219 ATCGCAATGCGAAATGAAAATCGCAATGCGAAAATGAAA
1 ATCGCAATGCGAAATGAAAATCGCAA-GCG--AATGAAA
537258 ATCGCAATG
1 ATCGCAATG
537267 GGAGAATCGC
Statistics
Matches: 73, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
33 29 0.40
34 1 0.01
35 2 0.03
36 2 0.03
38 27 0.37
39 12 0.16
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.15
Consensus pattern (36 bp):
ATCGCAATGCGAAATGAAAATCGCAAGCGAATGAAA
Found at i:537301 original size:19 final size:19
Alignment explanation
Indices: 537273--537355 Score: 95
Period size: 19 Copynumber: 4.6 Consensus size: 19
537263 AATGGGAGAA
* *
537273 TCGCAATGCGATTTTAATT
1 TCGCATTGCGATTTTCATT
*
537292 TCGCATTGCGA--TTC-TC
1 TCGCATTGCGATTTTCATT
537308 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
537325 TCGCATTGCAATTTTCATT
1 TCGCATTGCGATTTTCATT
537344 TCGCATTGCGAT
1 TCGCATTGCGAT
537356 AGTCAATTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
14 6 0.11
16 7 0.13
17 6 0.11
19 34 0.64
ACGTcount: A:0.18, C:0.22, G:0.17, T:0.43
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:537302 original size:53 final size:53
Alignment explanation
Indices: 537166--537283 Score: 211
Period size: 53 Copynumber: 2.2 Consensus size: 53
537156 GCGAAATGAA
537166 AATCGCAATGCGAAATGAAAATCGCAATGCG-AAATGAAAATCGCAACGAGAG
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAAATGAAAATCGCAACGAGAG
* *
537218 AATCGCAATGCGAAATGAAAATCGCAATGCGAAAATGAAAATCGCAATGGGAG
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAAATGAAAATCGCAACGAGAG
537271 AATCGCAATGCGA
1 AATCGCAATGCGA
537284 TTTTAATTTC
Statistics
Matches: 63, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
52 31 0.49
53 32 0.51
ACGTcount: A:0.45, C:0.17, G:0.24, T:0.14
Consensus pattern (53 bp):
AATCGCAATGCGAAATGAAAATCGCAATGCGAAAATGAAAATCGCAACGAGAG
Found at i:537466 original size:33 final size:33
Alignment explanation
Indices: 537414--537543 Score: 197
Period size: 33 Copynumber: 3.8 Consensus size: 33
537404 CCATTACATT
537414 TCGCAATGCGGAAATGAAAATCGCAACGAGAGAA
1 TCGCAATGC-GAAATGAAAATCGCAACGAGAGAA
*
537448 TCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAA
1 TCGCAATGCGAAATGAAAATCGCAA--CG--A-GAGAA
537486 TCGCAATGCGAAATGAAAATCGCAACGAGAGAA
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAA
537519 TCGCAATGCGAAATGAAAATCGCAA
1 TCGCAATGCGAAATGAAAATCGCAA
537544 TGCGAAATGA
Statistics
Matches: 89, Mismatches: 2, Indels: 11
0.87 0.02 0.11
Matches are distributed among these distances:
33 45 0.51
34 10 0.11
35 2 0.02
36 2 0.02
37 1 0.01
38 29 0.33
ACGTcount: A:0.45, C:0.18, G:0.23, T:0.14
Consensus pattern (33 bp):
TCGCAATGCGAAATGAAAATCGCAACGAGAGAA
Found at i:537470 original size:19 final size:19
Alignment explanation
Indices: 537414--537564 Score: 205
Period size: 19 Copynumber: 8.4 Consensus size: 19
537404 CCATTACATT
537414 TCGCAATGCGGAAATGAAAA
1 TCGCAATGC-GAAATGAAAA
*
537434 TCGCAA--CG--A-GAGAA
1 TCGCAATGCGAAATGAAAA
537448 TCGCAATGCGAAATGAAAA
1 TCGCAATGCGAAATGAAAA
537467 TCGCAATGCGAAATGAAAA
1 TCGCAATGCGAAATGAAAA
537486 TCGCAATGCGAAATGAAAA
1 TCGCAATGCGAAATGAAAA
*
537505 TCGCAA--CG--A-GAGAA
1 TCGCAATGCGAAATGAAAA
537519 TCGCAATGCGAAATGAAAA
1 TCGCAATGCGAAATGAAAA
537538 TCGCAATGCGAAATGAAAA
1 TCGCAATGCGAAATGAAAA
537557 TCGCAATG
1 TCGCAATG
537565 GGAGAATCGC
Statistics
Matches: 117, Mismatches: 4, Indels: 21
0.82 0.03 0.15
Matches are distributed among these distances:
14 20 0.17
15 2 0.02
16 4 0.03
17 3 0.03
18 3 0.03
19 79 0.68
20 6 0.05
ACGTcount: A:0.45, C:0.17, G:0.23, T:0.15
Consensus pattern (19 bp):
TCGCAATGCGAAATGAAAA
Found at i:537504 original size:71 final size:72
Alignment explanation
Indices: 537414--537564 Score: 295
Period size: 71 Copynumber: 2.1 Consensus size: 72
537404 CCATTACATT
537414 TCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAA
1 TCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAA
537479 ATGAAAA
66 ATGAAAA
537486 TCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAA
1 TCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAA
537550 ATGAAAA
66 ATGAAAA
537557 TCGCAATG
1 TCGCAATG
537565 GGAGAATCGC
Statistics
Matches: 79, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
71 70 0.89
72 9 0.11
ACGTcount: A:0.45, C:0.17, G:0.23, T:0.15
Consensus pattern (72 bp):
TCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAA
ATGAAAA
Found at i:537521 original size:52 final size:52
Alignment explanation
Indices: 537414--537581 Score: 225
Period size: 52 Copynumber: 3.2 Consensus size: 52
537404 CCATTACATT
* * * *
537414 TCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCG-CAATGCGAAATGA-A-AA
1 TCGCAATGC-GAAATGAAAATCGCAATGCGA-AAT-GAAAAT-CGCAATGAGAGAA
*
537467 TCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAA
1 TCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGAGAGAA
*
537519 TCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGGGAGAA
1 TCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGAGAGAA
537571 TCGCAATGCGA
1 TCGCAATGCGA
537582 TTTTAATTTC
Statistics
Matches: 105, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
50 7 0.07
51 7 0.07
52 82 0.78
53 9 0.09
ACGTcount: A:0.44, C:0.17, G:0.24, T:0.14
Consensus pattern (52 bp):
TCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGAGAGAA
Found at i:537573 original size:33 final size:32
Alignment explanation
Indices: 537464--537581 Score: 96
Period size: 33 Copynumber: 3.4 Consensus size: 32
537454 TGCGAAATGA
*
537464 AAATCGCAATGCGAAATGAAAATCGCAATGCG
1 AAATCGCAATGCGAAATGAAAATCGCAATGGG
* * *
537496 AAAT-GAAAAT-CGCAACGAGAGAATCGCAATGCGAAATG
1 AAATCG-CAATGCGAAATGA-A-AATCGCAATG-G----G
537534 AAAATCGCAATGCGAAATGAAAATCGCAATGGG
1 -AAATCGCAATGCGAAATGAAAATCGCAATGGG
537567 AGAATCGCAATGCGA
1 A-AATCGCAATGCGA
537582 TTTTAATTTC
Statistics
Matches: 67, Mismatches: 7, Indels: 23
0.69 0.07 0.24
Matches are distributed among these distances:
31 7 0.10
32 9 0.13
33 24 0.36
37 1 0.01
38 11 0.16
39 8 0.12
40 7 0.10
ACGTcount: A:0.45, C:0.17, G:0.24, T:0.14
Consensus pattern (32 bp):
AAATCGCAATGCGAAATGAAAATCGCAATGGG
Found at i:537602 original size:19 final size:19
Alignment explanation
Indices: 537571--537653 Score: 95
Period size: 19 Copynumber: 4.6 Consensus size: 19
537561 AATGGGAGAA
* *
537571 TCGCAATGCGATTTTAATT
1 TCGCATTGCGATTTTCATT
* *
537590 TCGCATTGTGA--TTC-TC
1 TCGCATTGCGATTTTCATT
537606 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
537623 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
537642 TCGCATTGCGAT
1 TCGCATTGCGAT
537654 AGTCAATTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
14 5 0.09
16 7 0.13
17 6 0.11
19 35 0.66
ACGTcount: A:0.17, C:0.20, G:0.18, T:0.45
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:537662 original size:298 final size:290
Alignment explanation
Indices: 537148--537993 Score: 1331
Period size: 298 Copynumber: 2.9 Consensus size: 290
537138 AAAATTGACT
537148 ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAAC
1 ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAAC
537213 GAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAAATGAAAATCGCAATGGGAGAATCGCA
66 GAGAGAATCGCAATGCGAAATGAAAATCGCAATGCG-AAATGAAAATCGCAATGGGAGAATCGCA
*
537278 ATGCGATTTTAATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCAATTTTCAT
130 ATGCGATTTTAATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCAT
537343 TTCGCATTGCGATAGTCAATTTTGCCTTCAACATAATGCAGATTGAAATCAACAAAATCAACCAT
195 TTCGCATTGCGATAGTCAATTTTGCCTTCAACATAATGCAGATTGAAATCAACAAAATCAACCAT
537408 TACATTTCGCAATGCGGAAATGAAAATCGCAACGAGAGA
260 TACATTTCGCAATGCGGAAATGAAAATCG---C-----A
537447 ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAAC
1 ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAAC
537512 GAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGGGAGAATCGCAA
66 GAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGGGAGAATCGCAA
*
537577 TGCGATTTTAATTTCGCATTGTGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATT
131 TGCGATTTTAATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATT
537642 TCGCATTGCGATAGTCAATTTTGCCTTCAACATAATGCAGATTGAAATCAACAAAATCAACCATT
196 TCGCATTGCGATAGTCAATTTTGCCTTCAACATAATGCAGATTGAAATCAACAAAATCAACCATT
537707 ACATTTCGCAATGCGGAAATGAAAATCGCA
261 ACATTTCGCAATGCGGAAATGAAAATCGCA
537737 A-CG--A---G--A-G--AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAAC
1 ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAAC
* * * **** * * *** **
537791 GAGAGAATCGCAATGCGAAATTAAAATCGCATTGCG-ATTCTCCCATTGCGATTTTCA-TTTCCG
66 GAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAAT-GAAAATCGC-AATGGGAGAAT-CG
* *
537854 CATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
128 CAATGCGATTTTAATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
537919 ATTTCGCATTGCGATAGTCAATTTTGCCTTCAACATAATGCAGATTGAAATCAACAAAATCAACC
193 ATTTCGCATTGCGATAGTCAATTTTGCCTTCAACATAATGCAGATTGAAATCAACAAAATCAACC
537984 ATTACATTTC
258 ATTACATTTC
537994 AATCAATTAA
Statistics
Matches: 525, Mismatches: 19, Indels: 25
0.92 0.03 0.04
Matches are distributed among these distances:
278 2 0.00
279 86 0.16
280 142 0.27
281 1 0.00
282 1 0.00
284 1 0.00
287 1 0.00
289 2 0.00
290 2 0.00
295 1 0.00
298 185 0.35
299 101 0.19
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (290 bp):
ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAAC
GAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGGGAGAATCGCAA
TGCGATTTTAATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATT
TCGCATTGCGATAGTCAATTTTGCCTTCAACATAATGCAGATTGAAATCAACAAAATCAACCATT
ACATTTCGCAATGCGGAAATGAAAATCGCA
Found at i:537768 original size:19 final size:19
Alignment explanation
Indices: 537712--537827 Score: 117
Period size: 19 Copynumber: 6.6 Consensus size: 19
537702 CCATTACATT
537712 TCGCAATGCGGAAATGAAAA
1 TCGCAATGC-GAAATGAAAA
*
537732 TCGCAA--CG--A-GAGAA
1 TCGCAATGCGAAATGAAAA
537746 TCGCAATGCGAAATGAAAA
1 TCGCAATGCGAAATGAAAA
537765 TCGCAATGCGAAATGAAAA
1 TCGCAATGCGAAATGAAAA
*
537784 TCGCAA--CG--A-GAGAA
1 TCGCAATGCGAAATGAAAA
*
537798 TCGCAATGCGAAATTAAAA
1 TCGCAATGCGAAATGAAAA
*
537817 TCGCATTGCGA
1 TCGCAATGCGA
537828 TTCTCCCATT
Statistics
Matches: 80, Mismatches: 6, Indels: 21
0.75 0.06 0.20
Matches are distributed among these distances:
14 20 0.25
15 2 0.03
16 4 0.05
17 3 0.04
18 3 0.04
19 42 0.52
20 6 0.08
ACGTcount: A:0.43, C:0.18, G:0.23, T:0.16
Consensus pattern (19 bp):
TCGCAATGCGAAATGAAAA
Found at i:537791 original size:52 final size:52
Alignment explanation
Indices: 537712--537827 Score: 205
Period size: 52 Copynumber: 2.2 Consensus size: 52
537702 CCATTACATT
537712 TCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAA
1 TCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAA
*
537765 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATTAAAA
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAA
*
537817 TCGCATTGCGA
1 TCGCAATGCGA
537828 TTCTCCCATT
Statistics
Matches: 61, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
52 52 0.85
53 9 0.15
ACGTcount: A:0.43, C:0.18, G:0.23, T:0.16
Consensus pattern (52 bp):
TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAA
Found at i:537876 original size:19 final size:19
Alignment explanation
Indices: 537834--537933 Score: 147
Period size: 19 Copynumber: 5.5 Consensus size: 19
537824 GCGATTCTCC
537834 CATTGCGATTTTCATTTCCG
1 CATTGCGATTTTCATTT-CG
537854 CATTGCGATTTTCATTTCG
1 CATTGCGATTTTCATTTCG
*
537873 CATTGCGA--TTC-TCTCG
1 CATTGCGATTTTCATTTCG
537889 --TTGCGATTTTCATTTCG
1 CATTGCGATTTTCATTTCG
537906 CATTGCGATTTTCATTTCG
1 CATTGCGATTTTCATTTCG
537925 CATTGCGAT
1 CATTGCGAT
537934 AGTCAATTTT
Statistics
Matches: 73, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
14 6 0.08
16 7 0.10
17 7 0.10
19 36 0.49
20 17 0.23
ACGTcount: A:0.15, C:0.23, G:0.17, T:0.45
Consensus pattern (19 bp):
CATTGCGATTTTCATTTCG
Found at i:537930 original size:52 final size:53
Alignment explanation
Indices: 537817--537933 Score: 209
Period size: 53 Copynumber: 2.2 Consensus size: 53
537807 GAAATTAAAA
537817 TCGCATTGCGATTCTCCCATTGCGATTTTCATTTCCGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCCCATTGCGATTTTCATTTCCGCATTGCGATTTTCATT
* *
537870 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTT-CGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCCCATTGCGATTTTCATTTCCGCATTGCGATTTTCATT
537922 TCGCATTGCGAT
1 TCGCATTGCGAT
537934 AGTCAATTTT
Statistics
Matches: 62, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
52 30 0.48
53 32 0.52
ACGTcount: A:0.15, C:0.25, G:0.17, T:0.44
Consensus pattern (53 bp):
TCGCATTGCGATTCTCCCATTGCGATTTTCATTTCCGCATTGCGATTTTCATT
Found at i:538059 original size:14 final size:14
Alignment explanation
Indices: 538040--538076 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
538030 CATCAATTAC
538040 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
538054 ACAAATCATCTTTT
1 ACAAATCAACTTTT
538068 ACAAATCAA
1 ACAAATCAA
538077 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:540061 original size:14 final size:14
Alignment explanation
Indices: 540042--540098 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
540032 GCGAAATGAA
*
540042 AATCGCAACGACAG
1 AATCGCAACGAAAG
540056 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
540073 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
540089 AATCGCAACG
1 AATCGCAACG
540099 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:540069 original size:33 final size:33
Alignment explanation
Indices: 540023--540115 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
540013 GCGAAACCAA
*
540023 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
540056 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
540089 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
540116 TGCGATTTTG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.47, C:0.22, G:0.20, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:540080 original size:19 final size:19
Alignment explanation
Indices: 539986--540120 Score: 128
Period size: 19 Copynumber: 7.6 Consensus size: 19
539976 TAGTTTACTT
* *
539986 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
540006 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
540025 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
540044 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
540058 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
540077 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
540091 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
540110 TCGCAATGCGA
1 TCGCAACGCGA
540121 TTTTGGTTTC
Statistics
Matches: 97, Mismatches: 8, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
14 16 0.16
16 11 0.11
17 11 0.11
19 47 0.48
20 12 0.12
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:540138 original size:19 final size:19
Alignment explanation
Indices: 540116--540244 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
540106 AAAATCGCAA
540116 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
540135 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
540149 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
540168 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
540182 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
540201 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
540220 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
540240 TGCGA
1 TGCGA
540245 AAGTAAACTA
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 22 0.24
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 48 0.53
20 13 0.14
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:540158 original size:33 final size:33
Alignment explanation
Indices: 540116--540207 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
540106 AAAATCGCAA
540116 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
540149 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
540182 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
540208 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 54 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.18, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:540447 original size:93 final size:93
Alignment explanation
Indices: 540288--540668 Score: 735
Period size: 93 Copynumber: 4.1 Consensus size: 93
540278 TTGAATGGAT
*
540288 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTAACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
540353 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
*
540381 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTATAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
540446 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
540474 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
540539 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
540567 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
*
540632 AGTTTAGCAGAATTGGCAGCAACCGAAT
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
540660 AAATTTACT
1 AAATTTACT
540669 AAGCAATCTA
Statistics
Matches: 284, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 284 1.00
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.23
Consensus pattern (93 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:542383 original size:14 final size:14
Alignment explanation
Indices: 542364--542439 Score: 53
Period size: 14 Copynumber: 4.7 Consensus size: 14
542354 GTTGAAATGA
542364 AATCGCAACGAGAG
1 AATCGCAACGAGAG
542378 AATCGCAACGCGAGATG
1 AATCGCAA--CGAGA-G
*
542395 ACAATCGCAACGCGAAATGAA
1 --AATCGCAA--CG--A-GAG
542416 AATCGCAACGAGAG
1 AATCGCAACGAGAG
542430 AATCGCAACG
1 AATCGCAACG
542440 CGAAATGAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 16
0.74 0.03 0.23
Matches are distributed among these distances:
14 20 0.38
15 1 0.02
16 5 0.10
17 3 0.06
19 20 0.38
21 1 0.02
22 2 0.04
ACGTcount: A:0.42, C:0.24, G:0.25, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:542402 original size:19 final size:19
Alignment explanation
Indices: 542378--542461 Score: 97
Period size: 19 Copynumber: 4.7 Consensus size: 19
542368 GCAACGAGAG
* *
542378 AATCGCAACGCGAGATGAC
1 AATCGCAACGCGAAATGAA
542397 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
542416 AATCGCAA--CG--A-GAG
1 AATCGCAACGCGAAATGAA
542430 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
542449 AATCGCAATGCGA
1 AATCGCAACGCGA
542462 TTTTGGTTTC
Statistics
Matches: 55, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
14 10 0.18
15 1 0.02
16 2 0.04
17 2 0.04
18 1 0.02
19 39 0.71
ACGTcount: A:0.43, C:0.23, G:0.24, T:0.11
Consensus pattern (19 bp):
AATCGCAACGCGAAATGAA
Found at i:542423 original size:52 final size:51
Alignment explanation
Indices: 542357--542461 Score: 174
Period size: 52 Copynumber: 2.0 Consensus size: 51
542347 TCTTTTGGTT
* *
542357 GAAATGAAATCGCAACGAGAGAATCGCAACGCGAGATGACAATCGCAACGC
1 GAAATGAAATCGCAACGAGAGAATCGCAACGCGAAATGAAAATCGCAACGC
*
542408 GAAATGAAAATCGCAACGAGAGAATCGCAACGCGAAATGAAAATCGCAATGC
1 GAAATG-AAATCGCAACGAGAGAATCGCAACGCGAAATGAAAATCGCAACGC
542460 GA
1 GA
542462 TTTTGGTTTC
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
51 6 0.12
52 44 0.88
ACGTcount: A:0.44, C:0.21, G:0.25, T:0.10
Consensus pattern (51 bp):
GAAATGAAATCGCAACGAGAGAATCGCAACGCGAAATGAAAATCGCAACGC
Found at i:542492 original size:14 final size:14
Alignment explanation
Indices: 542473--542529 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
542463 TTTGGTTTCG
542473 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
542487 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
542506 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
542520 CGTTGCGATT
1 CGTTGCGATT
542530 TTCATTTCTC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
16 3 0.08
17 3 0.08
19 10 0.28
ACGTcount: A:0.09, C:0.25, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:542505 original size:33 final size:33
Alignment explanation
Indices: 542457--542537 Score: 144
Period size: 33 Copynumber: 2.5 Consensus size: 33
542447 AAAATCGCAA
**
542457 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
542490 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
542523 TGCGATTTTCATTTC
1 TGCGATTTTCATTTC
542538 TCTCGTTGCG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.09, C:0.22, G:0.22, T:0.47
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:542540 original size:21 final size:21
Alignment explanation
Indices: 542514--542589 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
542504 CGCGTTGCGA
542514 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
***
542535 TTCTCTCGTTGCGACAGTCA-
1 TTCTCTCGTTGCGATTTTCAT
542555 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
*
542576 TTATCTCGTTGCGA
1 TTCTCTCGTTGCGA
542590 CTCTTCTGCA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
20 17 0.36
21 30 0.64
ACGTcount: A:0.12, C:0.25, G:0.17, T:0.46
Consensus pattern (21 bp):
TTCTCTCGTTGCGATTTTCAT
Found at i:542570 original size:41 final size:41
Alignment explanation
Indices: 542513--542590 Score: 147
Period size: 41 Copynumber: 1.9 Consensus size: 41
542503 TCGCGTTGCG
*
542513 ATTCTCTCGTTGCGATTTTCATTTCTCTCGTTGCGACAGTC
1 ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGACAGTC
542554 ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGAC
1 ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGAC
542591 TCTTCTGCAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.13, C:0.26, G:0.17, T:0.45
Consensus pattern (41 bp):
ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGACAGTC
Found at i:542722 original size:33 final size:33
Alignment explanation
Indices: 542669--542739 Score: 97
Period size: 33 Copynumber: 2.2 Consensus size: 33
542659 AATACTAACT
* * *
542669 TGAAAATCGGAATGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
542702 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
542735 TGAAA
1 TGAAA
542740 TCTAAGTGAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.48, C:0.15, G:0.24, T:0.13
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:543144 original size:20 final size:20
Alignment explanation
Indices: 543119--543312 Score: 221
Period size: 20 Copynumber: 9.7 Consensus size: 20
543109 CTTTAAATAT
543119 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
543139 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
543161 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
543180 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
543200 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
543220 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
543240 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
543260 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
543280 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
543300 CGCGTTGCGATTT
1 CGCGTTGCGATTT
543313 TGGAAAATCG
Statistics
Matches: 147, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
19 2 0.01
20 128 0.87
21 15 0.10
22 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:543306 original size:60 final size:60
Alignment explanation
Indices: 543119--543312 Score: 253
Period size: 60 Copynumber: 3.2 Consensus size: 60
543109 CTTTAAATAT
**
543119 CGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATA
* * *** *
543180 CGCGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
* * * ** *
543240 CACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
543300 CGCGTTGCGATTT
1 CGCGTTGCGATTT
543313 TGGAAAATCG
Statistics
Matches: 112, Mismatches: 21, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
60 84 0.75
61 28 0.25
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
Found at i:543329 original size:21 final size:21
Alignment explanation
Indices: 543299--543381 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 21
543289 ATTTTCATAT
*
543299 TCGCGTTGCGATTTTGGAAAA
1 TCGCATTGCGATTTTGGAAAA
* * * **
543320 TCGCAATGCGAATTTGTACTA
1 TCGCATTGCGATTTTGGAAAA
*
543341 TCGCATTGCGATTTT-CAAGAA
1 TCGCATTGCGATTTTGGAA-AA
*
543362 TCGCGTTGCGATTTTGGAAA
1 TCGCATTGCGATTTTGGAAA
543382 CTGATTTGCG
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
20 1 0.02
21 44 0.94
22 2 0.04
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTTGGAAAA
Found at i:543372 original size:42 final size:43
Alignment explanation
Indices: 543279--543377 Score: 100
Period size: 42 Copynumber: 2.4 Consensus size: 43
543269 ATTTATGTGT
* *
543279 TCGCGTTGCG-ATTT-TCATATTCGCGTTGCGATTTTGGAAAA
1 TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
**
543320 TCGCAATGCGAATTTGT-ACTA-TCGCATTGCGATTTT-CAAGAA
1 TCGCGTTGCGAATTTGTCA-TATTCGCATTGCGATTTTGCAA-AA
*
543362 TCGCGTTGCGATTTTG
1 TCGCGTTGCGAATTTG
543378 GAAACTGATT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
41 10 0.21
42 34 0.72
43 3 0.06
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.37
Consensus pattern (43 bp):
TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
Found at i:548513 original size:96 final size:96
Alignment explanation
Indices: 548398--548907 Score: 295
Period size: 99 Copynumber: 5.3 Consensus size: 96
548388 ACCGTCGCCT
* * *
548398 TCTCCTCCACCACCACCAAAACATGAAGAGAAGCCATATTATTATAAATCACCACCACCACCATC
1 TCTCCTCCACCACCACCAAAACACGAAGAGAAACCATACTATTATAAATCACCACCACCACCATC
*
548463 ACCTCCTCCCCCAACTCCTTACGAGTACAAG
66 ACCTCCTCCCCCAACTCCTTACGAATACAAG
* * * *
548494 TCTCCTCCTCCACCACCAAAGCACGAAGAGAAACCGTACTATTATAAATCTCCACCACCACCATC
1 TCTCCTCCACCACCACCAAAACACGAAGAGAAACCATACTATTATAAATCACCACCACCACCATC
* * * * *
548559 ACCTTCTCCTCCACCTCCTTATGAATATAAG
66 ACCTCCTCCCCCAACTCCTTACGAATACAAG
* * * ****** * * *
548590 --T-CTCCACCACCTCC--ATCAC-CACCTCCTCCATACGT-TTATAAGTCTCCACCACCACCTT
1 TCTCCTCCACCACCACCAAAACACGAAGAGAAACCATAC-TATTATAAATCACCACCACCACCAT
* * * **
548648 CACCAT-CTCCACCACCTCCGTACGTCTACAAG
65 CACC-TCCTCCCCCAACTCCTTACGAATACAAG
* * * * * * * *
548680 TCTCCACCACCACCACCGAAACACGAGGAGCAACCCCCATACTATTACAAGTCTCCTCCACCACC
1 TCTCCTCCACCACCACCAAAACACGAAGAG-AA--ACCATACTATTATAAATCACCACCACCACC
* * * * **
548745 TTCACCATCC-CCACCACCTCCATACGTCTACAAG
63 ATCACC-TCCTCCCCCAACTCCTTACGAATACAAG
* * * ** * *
548779 TCTCCACCACCACCACCAAAACACGAGGAGCAACC-CCCGTATTACTACAAGTCTCCTCCACCAC
1 TCTCCTCCACCACCACCAAAACACGAAGAGAAACCATAC-TATTA-TA-AA-TCACCACCACCAC
* * * * ** *
548843 CTTCACCATCC-CCACCACCTCCATACGTCTACAAA
62 CATCACC-TCCTCCCCCAACTCCTTACGAATACAAG
* * *
548878 TCTCCACCACCACCACCCAAACATGAAGAG
1 TCTCCTCCACCACCACCAAAACACGAAGAG
548908 CAGCCTCCAT
Statistics
Matches: 340, Mismatches: 57, Indels: 31
0.79 0.13 0.07
Matches are distributed among these distances:
90 51 0.15
91 6 0.02
92 1 0.00
93 22 0.06
94 1 0.00
95 5 0.01
96 90 0.26
97 1 0.00
98 3 0.01
99 159 0.47
100 1 0.00
ACGTcount: A:0.30, C:0.44, G:0.07, T:0.19
Consensus pattern (96 bp):
TCTCCTCCACCACCACCAAAACACGAAGAGAAACCATACTATTATAAATCACCACCACCACCATC
ACCTCCTCCCCCAACTCCTTACGAATACAAG
Found at i:548588 original size:48 final size:46
Alignment explanation
Indices: 548536--548694 Score: 164
Period size: 48 Copynumber: 3.5 Consensus size: 46
548526 ACCGTACTAT
* * *
548536 TATAAATCTCCACCACCACCATCACCTTCTCCTCCACCTCCTTATG
1 TATAAGTCTCCACCACCACCATCACCATCTCCTCCACCTCCGTATG
* * *
548582 AATATAAGTCTCCACCACCTCCATCACCACCTCCTCCA--TACGT-T-
1 --TATAAGTCTCCACCACCACCATCACCATCTCCTCCACCTCCGTATG
* * *
548626 TATAAGTCTCCACCACCACCTTCACCATCTCCACCACCTCCGTACGTC
1 TATAAGTCTCCACCACCACCATCACCATCTCCTCCACCTCCGTA--TG
*
548674 TACAAGTCTCCACCACCACCA
1 TATAAGTCTCCACCACCACCA
548695 CCGAAACACG
Statistics
Matches: 92, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
42 32 0.35
44 4 0.04
45 1 0.01
46 3 0.03
47 1 0.01
48 51 0.55
ACGTcount: A:0.26, C:0.46, G:0.04, T:0.24
Consensus pattern (46 bp):
TATAAGTCTCCACCACCACCATCACCATCTCCTCCACCTCCGTATG
Found at i:548618 original size:42 final size:42
Alignment explanation
Indices: 548536--548657 Score: 109
Period size: 42 Copynumber: 2.8 Consensus size: 42
548526 ACCGTACTAT
* * * *
548536 TATAAATCTCCACCACCACCATCACCTTCTCCTCCACCTCCTTATGAA
1 TATAAGTCTCCACCACCACCATCA-C--CACCT---CCTCCATACGAA
* **
548584 TATAAGTCTCCACCACCTCCATCACCACCTCCTCCATACGTT
1 TATAAGTCTCCACCACCACCATCACCACCTCCTCCATACGAA
* *
548626 TATAAGTCTCCACCACCACCTTCACCATCTCC
1 TATAAGTCTCCACCACCACCATCACCACCTCC
548658 ACCACCTCCG
Statistics
Matches: 64, Mismatches: 10, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
42 37 0.58
45 4 0.06
47 1 0.02
48 22 0.34
ACGTcount: A:0.25, C:0.45, G:0.03, T:0.26
Consensus pattern (42 bp):
TATAAGTCTCCACCACCACCATCACCACCTCCTCCATACGAA
Found at i:548694 original size:42 final size:42
Alignment explanation
Indices: 548551--548694 Score: 117
Period size: 42 Copynumber: 3.3 Consensus size: 42
548541 ATCTCCACCA
* * * * * *
548551 CCACCATCACCTTCTCCTCCACCTCCTTATGAATATAAGTCT
1 CCACCACCACCATCTCCACCACCTCCATACGTATATAAGTCT
* * * *
548593 CCACCACCTCCATCACCACCTCCTCCATACGTTTATAAGTCT
1 CCACCACCACCATCTCCACCACCTCCATACGTATATAAGTCT
* * *
548635 CCACCACCACCTTCACCATCTCCACCACCTCCGTACGTCTACAAGTCT
1 ---CCACCA-C--CACCATCTCCACCACCTCCATACGTATATAAGTCT
548683 CCACCACCACCA
1 CCACCACCACCA
548695 CCGAAACACG
Statistics
Matches: 80, Mismatches: 16, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
42 37 0.46
44 1 0.01
45 12 0.15
46 1 0.01
48 29 0.36
ACGTcount: A:0.24, C:0.47, G:0.05, T:0.24
Consensus pattern (42 bp):
CCACCACCACCATCTCCACCACCTCCATACGTATATAAGTCT
Found at i:548741 original size:99 final size:99
Alignment explanation
Indices: 548629--548990 Score: 589
Period size: 99 Copynumber: 3.7 Consensus size: 99
548619 ATACGTTTAT
* * * *
548629 AAGTCTCCACCACCACCTTCACCATCTCCACCACCTCCGTACGTCTACAAGTCTCCACCACCACC
1 AAGTCTCCTCCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAATCTCCACCACCACC
* *
548694 ACCGAAACACGAGGAGCAACCCCCATACTATTAC
66 ACCAAAACACGAGGAGCAACCCCCATACTACTAC
*
548728 AAGTCTCCTCCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAGTCTCCACCACCACC
1 AAGTCTCCTCCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAATCTCCACCACCACC
* *
548793 ACCAAAACACGAGGAGCAACCCCCGTATTACTAC
66 ACCAAAACACGAGGAGCAACCCCCATACTACTAC
548827 AAGTCTCCTCCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAATCTCCACCACCACC
1 AAGTCTCCTCCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAATCTCCACCACCACC
* * * * *
548892 ACCCAAACATGAAGAGCAGCCTCCATACTACTAC
66 ACCAAAACACGAGGAGCAACCCCCATACTACTAC
*
548926 AAGTCTCCTCCACCACCTTCACCTTCCCCACCACCTCCATACGTCTACAAATCTCCACCACCACC
1 AAGTCTCCTCCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAATCTCCACCACCACC
548991 TTCACCATCC
Statistics
Matches: 247, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
99 247 1.00
ACGTcount: A:0.29, C:0.47, G:0.07, T:0.17
Consensus pattern (99 bp):
AAGTCTCCTCCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAATCTCCACCACCACC
ACCAAAACACGAGGAGCAACCCCCATACTACTAC
Found at i:548769 original size:48 final size:48
Alignment explanation
Indices: 548602--549230 Score: 388
Period size: 48 Copynumber: 12.9 Consensus size: 48
548592 TCCACCACCT
* * *
548602 CCATCACCACCTCCTCCATACGTTTATAAGTCTCCACCACCACCTTCA
1 CCATCACCACCACCTCCATACGTCTACAAGTCTCCACCACCACCTTCA
* * **
548650 CCATCTCCACCACCTCCGTACGTCTACAAGTCTCCACCACCACCACCGAA
1 CCATCACCACCACCTCCATACGTCTACAAGTCTCCACCACCACCTTC--A
* ** * * * *
548700 ACA-CGAGGAGCAACCCCCATAC-TATTACAAGTCTCCTCCACCACCTTCA
1 CCATC-ACCA-CCACCTCCATACGT-CTACAAGTCTCCACCACCACCTTCA
* **
548749 CCATCCCCACCACCTCCATACGTCTACAAGTCTCCACCACCACCACCAAA
1 CCATCACCACCACCTCCATACGTCTACAAGTCTCCACCACCACCTTC--A
* ** * * * * *
548799 ACA-CGAGGAGCAACCCCCGTA-TTACTACAAGTCTCCTCCACCACCTTCA
1 CCATC-ACCA-CCACCTCCATACGT-CTACAAGTCTCCACCACCACCTTCA
* * **
548848 CCATCCCCACCACCTCCATACGTCTACAAATCTCCACCACCACCACCCAA
1 CCATCACCACCACCTCCATACGTCTACAAGTCTCCACCACCACC-TTC-A
* * ** * *
548898 ACATGAAGAGCAGCCTCCATAC-TACTACAAGTCTCCTCCACCACCTTCA
1 CCATCACCACCA-CCTCCATACGT-CTACAAGTCTCCACCACCACCTTCA
* * *
548947 CCTTCCCCACCACCTCCATACGTCTACAAATCTCCACCACCACCTTCA
1 CCATCACCACCACCTCCATACGTCTACAAGTCTCCACCACCACCTTCA
* * * **
548995 CCATCCCCACCACCTCCATATGTCTACAAATCTCCACCACCACCACCGAA
1 CCATCACCACCACCTCCATACGTCTACAAGTCTCCACCACCACCTTC--A
* ** * * *
549045 ACA-CGAGGAGCAACCTCCATAC-TATTACAAGTCT---CCTCCACC-T--
1 CCATC-ACCA-CCACCTCCATACGT-CTACAAGTCTCCACCACCACCTTCA
* **
549088 CCTTCACCACCACCTCCATACGTCTACAAGTCCCCTCCACCACCACC-GAA
1 CCATCACCACCACCTCCATACGTCTACAAGT---CTCCACCACCACCTTCA
* * ** * * *
549138 ACATGAGGAGCAGCCCCCATAC-TACTACAAATCTCCACCACCACCTTCA
1 CCATCACCACCA-CCTCCATACGT-CTACAAGTCTCCACCACCACCTTCA
* *
549187 CCATCCCCACCACCTCCATACGTCTACAAATCTCCACCACCACC
1 CCATCACCACCACCTCCATACGTCTACAAGTCTCCACCACCACC
549231 AAAACACGAG
Statistics
Matches: 434, Mismatches: 109, Indels: 76
0.70 0.18 0.12
Matches are distributed among these distances:
42 18 0.04
43 4 0.01
44 1 0.00
45 2 0.00
48 228 0.53
49 29 0.07
50 33 0.08
51 119 0.27
ACGTcount: A:0.29, C:0.47, G:0.07, T:0.18
Consensus pattern (48 bp):
CCATCACCACCACCTCCATACGTCTACAAGTCTCCACCACCACCTTCA
Found at i:548983 original size:27 final size:26
Alignment explanation
Indices: 548953--549035 Score: 86
Period size: 27 Copynumber: 3.3 Consensus size: 26
548943 TTCACCTTCC
548953 CCACCACCTCCATACGTCTACAAATCT
1 CCACCACCTCCATA-GTCTACAAATCT
* * *
548980 CCACCACCACC-T--TC-AC-CATCC
1 CCACCACCTCCATAGTCTACAAATCT
549001 CCACCACCTCCATATGTCTACAAATCT
1 CCACCACCTCCATA-GTCTACAAATCT
549028 CCACCACC
1 CCACCACC
549036 ACCACCGAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
21 13 0.30
22 3 0.07
23 2 0.05
25 2 0.05
26 3 0.07
27 21 0.48
ACGTcount: A:0.28, C:0.51, G:0.02, T:0.19
Consensus pattern (26 bp):
CCACCACCTCCATAGTCTACAAATCT
Found at i:548987 original size:147 final size:141
Alignment explanation
Indices: 548823--549131 Score: 474
Period size: 147 Copynumber: 2.1 Consensus size: 141
548813 CCCCGTATTA
548823 CTACAAGTCTCCTCCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAATCTCCACCAC
1 CTACAAGTCTCCTCCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAATCTCCACCAC
* * *
548888 CACCACCCAAACATGAAGAGCAGCCTCCATACTACTACAAGTCTCCTCCACCACCTTCACCTTCC
66 CACCACCCAAACACGAAGAGCAACCTCCATACTACTACAAGTCTCCT---CCACC-T--CCTTCA
548953 CCACCACCTCCATACGT
125 CCACCACCTCCATACGT
* * *
548970 CTACAAATCTCCACCACCACCTTCACCATCCCCACCACCTCCATATGTCTACAAATCTCCACCAC
1 CTACAAGTCTCCTCCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAATCTCCACCAC
* * *
549035 CACCACCGAAACACGAGGAGCAACCTCCATACTATTACAAGTCTCCTCCACCTCCTTCACCACCA
66 CACCACCCAAACACGAAGAGCAACCTCCATACTACTACAAGTCTCCTCCACCTCCTTCACCACCA
549100 CCTCCATACGT
131 CCTCCATACGT
*
549111 CTACAAGTCCCCTCCACCACC
1 CTACAAGTCTCCTCCACCACC
549132 ACCGAAACAT
Statistics
Matches: 150, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
141 40 0.27
143 1 0.01
144 5 0.03
147 104 0.69
ACGTcount: A:0.28, C:0.48, G:0.06, T:0.19
Consensus pattern (141 bp):
CTACAAGTCTCCTCCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAATCTCCACCAC
CACCACCCAAACACGAAGAGCAACCTCCATACTACTACAAGTCTCCTCCACCTCCTTCACCACCA
CCTCCATACGT
Found at i:549038 original size:99 final size:98
Alignment explanation
Indices: 548603--549231 Score: 334
Period size: 99 Copynumber: 6.4 Consensus size: 98
548593 CCACCACCTC
* * * * *
548603 CATCACCACCTCCTCCATACGTTTATAAGTCT--CCACCACCACCTTCACCATCTCCACCACCTC
1 CATCACCACCACCTCCATATGTCTACAAGTCTCCCCACCACCACCTTCACCATCCCCACCACCTC
* * **
548666 CGTACGTCTACAAGTCTCCACCACCACCACCGAAA
66 CATACGTCTACAAATCTCCACCACCACCTTC--AA
** * * * *
548701 CA-CGAGGAGCAACCCCCATACTAT-TACAAGTCT--CCTCCACCACCTTCACCATCCCCACCAC
1 CATC-ACCA-CCACCTCCATA-TGTCTACAAGTCTCCCCACCACCACCTTCACCATCCCCACCAC
* **
548762 CTCCATACGTCTACAAGTCTCCACCACCACCACCAAAA
63 CTCCATACGTCTACAAATCTCCACCACCACCTTC--AA
** * * * *
548800 CA-CGAGGAGCAACCCCCGTAT-TACTACAAGTCT--CCTCCACCACCTTCACCATCCCCACCAC
1 CATC-ACCA-CCACCTCCATATGT-CTACAAGTCTCCCCACCACCACCTTCACCATCCCCACCAC
**
548861 CTCCATACGTCTACAAATCTCCACCACCACCACCCAAA
63 CTCCATACGTCTACAAATCTCCACCACCACC-TTC-AA
* ** * * * *
548899 CATGAAGAGCAGCCTCCATACT-ACTACAAGTCT--CCTCCACCACCTTCACCTTCCCCACCACC
1 CATCACCACCA-CCTCCATA-TGTCTACAAGTCTCCCCACCACCACCTTCACCATCCCCACCACC
*
548961 TCCATACGTCTACAAATCTCCACCACCACCTTCAC
64 TCCATACGTCTACAAATCTCCACCACCACCTTCAA
* * ** * *** *
548996 CATCCCCACCACCTCCATATGTCTACAAATCTCCACCACCACCACC-GAAACA-CGAGGAGCAAC
1 CATCACCACCACCTCCATATGTCTACAAGTCTCC-CCACCACCACCTTCACCATC-CCCA-CCAC
* * *
549059 CTCCATAC-TATTACAAGTCT---CCTCCACC-TC--
63 CTCCATACGT-CTACAAATCTCCACCACCACCTTCAA
* * * ** * **** *
549089 CTTCACCACCACCTCCATACGTCTACAAGTCCCCTCCACCACCACC-GAAACATGAGGAGCAGCC
1 CATCACCACCACCTCCATATGTCTACAAGTCTCC-CCACCACCACCTTCACCATCCCCACCA-CC
* *
549153 CCCATAC-TACTACAAATCTCCACCACCACCTTCAC
64 TCCATACGT-CTACAAATCTCCACCACCACCTTCAA
* * *
549188 CATCCCCACCACCTCCATACGTCTACAAATCTCCACCACCACCA
1 CATCACCACCACCTCCATATGTCTACAAGTCTCC-CCACCACCA
549232 AAACACGAGG
Statistics
Matches: 444, Mismatches: 63, Indels: 47
0.80 0.11 0.08
Matches are distributed among these distances:
92 1 0.00
93 68 0.15
95 3 0.01
96 31 0.07
97 12 0.03
98 11 0.02
99 314 0.71
100 4 0.01
ACGTcount: A:0.29, C:0.47, G:0.07, T:0.18
Consensus pattern (98 bp):
CATCACCACCACCTCCATATGTCTACAAGTCTCCCCACCACCACCTTCACCATCCCCACCACCTC
CATACGTCTACAAATCTCCACCACCACCTTCAA
Found at i:549146 original size:93 final size:94
Alignment explanation
Indices: 548962--549272 Score: 362
Period size: 93 Copynumber: 3.2 Consensus size: 94
548952 CCCACCACCT
* *
548962 CCATACGT-CTACAAATCTCCACCACCACCTTCACCATCCCCACCACCTCCATATGTCTACAAAT
1 CCATAC-TACTACAAGTCTCCACCACCACCTT--CCA--CCCACCACCTCCATACGTCTACAAAT
* *
549026 CTCCACCACCACCACCGAAACACGAGGAGCAACCT
61 C-CCTCCACCACCACCGAAACACGAGGAGCAACCC
* * * *
549061 CCATACTATTACAAGTCTCCTCCACCTCCTT-CA-CCACCACCTCCATACGTCTACAAGTCCCCT
1 CCATACTACTACAAGTCTCCACCACCACCTTCCACCCACCACCTCCATACGTCTACAAAT-CCCT
* *
549124 CCACCACCACCGAAACATGAGGAGCAGCCC
65 CCACCACCACCGAAACACGAGGAGCAACCC
*
549154 CCATACTACTACAAATCTCCACCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAAT-
1 CCATACTACTACAAGTCTCCACCACCACCTT--CCA--CCCACCACCTCCATACGTCTACAAATC
* *
549218 -CTCCACCACCACCAAAACACGAGGAACAACCC
62 CCTCCACCACCACCGAAACACGAGGAGCAACCC
*
549250 CCATACTACTACAAGTCCCCACC
1 CCATACTACTACAAGTCTCCACC
549273 CCCGCCAGTC
Statistics
Matches: 183, Mismatches: 21, Indels: 19
0.82 0.09 0.09
Matches are distributed among these distances:
93 79 0.43
94 1 0.01
96 53 0.29
98 1 0.01
99 49 0.27
ACGTcount: A:0.31, C:0.46, G:0.07, T:0.16
Consensus pattern (94 bp):
CCATACTACTACAAGTCTCCACCACCACCTTCCACCCACCACCTCCATACGTCTACAAATCCCTC
CACCACCACCGAAACACGAGGAGCAACCC
Found at i:549179 original size:147 final size:143
Alignment explanation
Indices: 548823--549182 Score: 386
Period size: 147 Copynumber: 2.5 Consensus size: 143
548813 CCCCGTATTA
* * ** * * *
548823 CTACAAGTCTCCTCCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAATCTCCACCAC
1 CTACAAATCTCCACCACCACCTGAAACATCACCACCACCCCCATAC-TCTACAAATCTCCACCAC
* * *
548888 CACCACCCAAACATGAAGAGCAGCCTCCATACTACTACAAGTCTCCTCCACCACCTTCACCTTCC
65 CACCACCCAAACACGAAGAGCAACCTCCATACTACTACAAGTCTCCT-C-CCACCTT-ACCTTCA
548953 CCACCACCTCCATACGT
127 CCACCACCTCCATACGT
** * * * *
548970 CTACAAATCTCCACCACCACCTTCACCATCCCCACCACCTCCATATGTCTACAAATCTCCACCAC
1 CTACAAATCTCCACCACCACCTGAAACATCACCACCACCCCCATA-CTCTACAAATCTCCACCAC
* * *
549035 CACCACCGAAACACGAGGAGCAACCTCCATACTATTACAAGTCTCCT-CCACC-T-CCTTCACCA
65 CACCACCCAAACACGAAGAGCAACCTCCATACTACTACAAGTCTCCTCCCACCTTACCTTCACCA
549097 CCACCTCCATACGT
130 CCACCTCCATACGT
* * ** *
549111 CTACAAGTCCCCTCCACCACCACC-GAAACATGAGGAGCAGCCCCCATACTACTACAAATCTCCA
1 CTACAAAT---CTCCACCACCACCTGAAACATCACCACCA-CCCCCATACT-CTACAAATCTCCA
549175 CCACCACC
61 CCACCACC
549183 TTCACCATCC
Statistics
Matches: 187, Mismatches: 20, Indels: 15
0.84 0.09 0.07
Matches are distributed among these distances:
141 29 0.16
143 9 0.05
144 46 0.25
147 103 0.55
ACGTcount: A:0.29, C:0.47, G:0.06, T:0.18
Consensus pattern (143 bp):
CTACAAATCTCCACCACCACCTGAAACATCACCACCACCCCCATACTCTACAAATCTCCACCACC
ACCACCCAAACACGAAGAGCAACCTCCATACTACTACAAGTCTCCTCCCACCTTACCTTCACCAC
CACCTCCATACGT
Found at i:549254 original size:48 final size:47
Alignment explanation
Indices: 549122--549272 Score: 126
Period size: 48 Copynumber: 3.1 Consensus size: 47
549112 TACAAGTCCC
* * *
549122 CTCCACCACCACCGAAACATGAGGAGCAGCCCCCATACTACTACAAAT
1 CTCCACCACCACC-AAACACGAGGAACAACCCCCATACTACTACAAAT
** * *** * *
549170 CTCCACCACCACC-TTCACCATCCCCACCACCTCCATACGT-CTACAAAT
1 CTCCACCACCACCAAACACGA--GGAACAACCCCCATAC-TACTACAAAT
*
549218 CTCCACCACCACCAAAACACGAGGAACAACCCCCATACTACTACAAGT
1 CTCCACCACCACC-AAACACGAGGAACAACCCCCATACTACTACAAAT
*
549266 CCCCACC
1 CTCCACC
549273 CCCGCCAGTC
Statistics
Matches: 76, Mismatches: 21, Indels: 12
0.70 0.19 0.11
Matches are distributed among these distances:
46 3 0.04
47 1 0.01
48 67 0.88
49 1 0.01
50 4 0.05
ACGTcount: A:0.33, C:0.46, G:0.07, T:0.13
Consensus pattern (47 bp):
CTCCACCACCACCAAACACGAGGAACAACCCCCATACTACTACAAAT
Found at i:549272 original size:96 final size:96
Alignment explanation
Indices: 548962--549272 Score: 393
Period size: 96 Copynumber: 3.2 Consensus size: 96
548952 CCCACCACCT
*
548962 CCATACGT-CTACAAATCTCCACCACCACCTTCACCATCCCCACCACCTCCATATGTCTACAAAT
1 CCATAC-TACTACAAATCTCCACCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAAT
*
549026 CTCCACCACCACCACCGAAACACGAGGAGCAACCT
65 CTCCACCACCACCA---AAACACGAGGAGCAACCC
* * * * *
549061 CCATACTATTACAAGTCTCCTCCACCTCCTT---CA---CCACCACCTCCATACGTCTACAAGTC
1 CCATACTACTACAAATCTCCACCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAAT-
* * *
549120 CCCTCCACCACCACCGAAACATGAGGAGCAGCCC
65 --CTCCACCACCACCAAAACACGAGGAGCAACCC
549154 CCATACTACTACAAATCTCCACCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAATC
1 CCATACTACTACAAATCTCCACCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAATC
*
549219 TCCACCACCACCAAAACACGAGGAACAACCC
66 TCCACCACCACCAAAACACGAGGAGCAACCC
* *
549250 CCATACTACTACAAGTCCCCACC
1 CCATACTACTACAAATCTCCACC
549273 CCCGCCAGTC
Statistics
Matches: 181, Mismatches: 21, Indels: 23
0.80 0.09 0.10
Matches are distributed among these distances:
93 65 0.36
96 66 0.36
98 1 0.01
99 49 0.27
ACGTcount: A:0.31, C:0.46, G:0.07, T:0.16
Consensus pattern (96 bp):
CCATACTACTACAAATCTCCACCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAATC
TCCACCACCACCAAAACACGAGGAGCAACCC
Found at i:549293 original size:96 final size:93
Alignment explanation
Indices: 548962--549326 Score: 328
Period size: 96 Copynumber: 3.8 Consensus size: 93
548952 CCCACCACCT
* * * *
548962 CCATACGT-CTACAAATCTCCACCACCACCTTCACCATCCCCACCACCTCCATATGTCTACAAAT
1 CCATAC-TACTACAAGTC-CCACCACCACCTCCA-C-TCACCACCACCTCCATACGTCTACAAAT
*
549026 CTCCACCACCACCACCGAAACACGAGGAGCAACCT
62 CTCCACCACCACCA---AAACACGAGGAGCAACCC
* * * * *
549061 CCATACTATTACAAGT--CTCCTCCACCTCC-TTCACCACCACCTCCATACGTCTACAAGTCCCC
1 CCATACTACTACAAGTCCCACCACCACCTCCACTCACCACCACCTCCATACGTCTACAAAT---C
* * *
549123 TCCACCACCACCGAAACATGAGGAGCAGCCC
63 TCCACCACCACCAAAACACGAGGAGCAACCC
* * *
549154 CCATACTACTACAAATCTCCACCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAATC
1 CCATACTACTACAAGTC-CCACCACCACCTCCA-C-TCACCACCACCTCCATACGTCTACAAATC
*
549219 TCCACCACCACCAAAACACGAGGAACAACCC
63 TCCACCACCACCAAAACACGAGGAGCAACCC
* * * * *
549250 CCATACTACTACAAGTCCCCACCCCCGCCAGTCCACTCTCCACCCCCAT-CATAC-TACTACAAG
1 CCATACTACTACAAGT-CCCACCACCACC--TCCACTCACCACCACC-TCCATACGT-CTACAAA
549313 TCTCCACCACCACC
61 TCTCCACCACCACC
549327 GGTGAAGTCC
Statistics
Matches: 219, Mismatches: 32, Indels: 33
0.77 0.11 0.12
Matches are distributed among these distances:
93 54 0.25
95 1 0.00
96 119 0.54
97 3 0.01
98 4 0.02
99 38 0.17
ACGTcount: A:0.30, C:0.47, G:0.07, T:0.16
Consensus pattern (93 bp):
CCATACTACTACAAGTCCCACCACCACCTCCACTCACCACCACCTCCATACGTCTACAAATCTCC
ACCACCACCAAAACACGAGGAGCAACCC
Found at i:550480 original size:36 final size:36
Alignment explanation
Indices: 550440--550531 Score: 121
Period size: 36 Copynumber: 2.6 Consensus size: 36
550430 GGTTTACATC
** * * *
550440 TACAAGTCACCACCTCCACCGGCTCCTACTTATGTT
1 TACAAGTCACCACCTCCACCAACACCCACCTATGTT
* *
550476 TACAAGTCACCACCACCTCCAACACCCACCTATGTT
1 TACAAGTCACCACCTCCACCAACACCCACCTATGTT
550512 TACAAGTCACCACCTCCACC
1 TACAAGTCACCACCTCCACC
550532 TTACTACTAC
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
36 47 1.00
ACGTcount: A:0.27, C:0.43, G:0.08, T:0.22
Consensus pattern (36 bp):
TACAAGTCACCACCTCCACCAACACCCACCTATGTT
Found at i:550642 original size:36 final size:36
Alignment explanation
Indices: 550586--550675 Score: 117
Period size: 36 Copynumber: 2.5 Consensus size: 36
550576 CCCCGTACTA
* * * **
550586 TTACAAGTCTCCGCCACCACCAAGTCCCACCTATAT
1 TTACAAGTCACCACCTCCACCAACACCCACCTATAT
* *
550622 TTACAAGTCACCACCTCCACCAACACCTACCTATGT
1 TTACAAGTCACCACCTCCACCAACACCCACCTATAT
550658 TTACAAGTCACCACCTCC
1 TTACAAGTCACCACCTCC
550676 TCCCCCATAT
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 47 1.00
ACGTcount: A:0.29, C:0.42, G:0.07, T:0.22
Consensus pattern (36 bp):
TTACAAGTCACCACCTCCACCAACACCCACCTATAT
Found at i:550743 original size:150 final size:150
Alignment explanation
Indices: 550470--551095 Score: 716
Period size: 147 Copynumber: 4.2 Consensus size: 150
550460 GGCTCCTACT
* *
550470 TATGTTTACAAGTCACCACCACCTCCAACACCCACCTATGTTTACAAGTCACCA---CCTCCACC
1 TATGTTTACAAGTCACCACCACCACCAACACCCACCTATGTTTACAAGTCACCACCTCCTCCCCC
* *
550532 TTACTACTACAAGTCTCCACCACCACCGAAACATGTAGTGAACCCCCCGTACTATTACAAGTCTC
66 ATACTACTACAAGTCTCCACCACCACCGAAACATGTAGTGAACCCCCCATACTATTACAAGTCTC
*
550597 CGCCACCACCAAGTCCCACC
131 CACCACCACCAAGTCCCACC
* * *
550617 TATATTTACAAGTCACCACCTCCACCAACACCTACCTATGTTTACAAGTCACCACCTCCTCCCCC
1 TATGTTTACAAGTCACCACCACCACCAACACCCACCTATGTTTACAAGTCACCACCTCCTCCCCC
* * * * * *
550682 ATATTACTACAAATCTCCACCACCACCGAAGCATGTTGTGAGCCCCCCATACTACTACAAG--T-
66 ATACTACTACAAGTCTCCACCACCACCGAAACATGTAGTGAACCCCCCATACTATTACAAGTCTC
*
550744 CACCACCACC-AGTACCCACT
131 CACCACCACCAAGT-CCCACC
* *
550764 TATGTTTACAAGTCACCACCACCACCACCACCCACCTATATTTACAAGTCACCACCTCCTCCCCC
1 TATGTTTACAAGTCACCACCACCACCAACACCCACCTATGTTTACAAGTCACCACCTCCTCCCCC
* *
550829 ATACTACTACAAGTCTCCACCACCACCGAAACATGTGGTGAATCCCCCATACTATTACAAGTCTC
66 ATACTACTACAAGTCTCCACCACCACCGAAACATGTAGTGAACCCCCCATACTATTACAAGTCTC
550894 CACCACCACCAAGTCCCACC
131 CACCACCACCAAGTCCCACC
* * * ** * ** *
550914 TATGTTTACAAGTCACCACCTCCTCCATACTA-CTACAAATCTCCACCACCACCAGTTCACTCTC
1 TATGTTTACAAGTCACCACCACCACCA-AC-ACCCACCTATGT---TTA-CA--AG-TCAC-CAC
* * * * * * *
550978 CACCACCACCATACTACTACAAGTCTCCACCACCACCAAAACACGT--CGAACAACCACCATACT
56 CTCCTCCCCCATACTACTACAAGTCTCCACCACCACCGAAACATGTAGTGAAC--CCCCCATACT
*
551041 ACTACAAGTCTCCACCACCACCAAG-CCCTACC
119 ATTACAAGTCTCCACCACCACCAAGTCCC-ACC
*
551073 TATGTTTACAAGTCCCCACCACC
1 TATGTTTACAAGTCACCACCACC
551096 TCCCCCGTAC
Statistics
Matches: 409, Mismatches: 49, Indels: 30
0.84 0.10 0.06
Matches are distributed among these distances:
146 3 0.01
147 178 0.44
148 1 0.00
149 1 0.00
150 100 0.24
151 10 0.02
152 1 0.00
154 1 0.00
155 2 0.00
157 5 0.01
158 7 0.02
159 100 0.24
ACGTcount: A:0.30, C:0.42, G:0.07, T:0.20
Consensus pattern (150 bp):
TATGTTTACAAGTCACCACCACCACCAACACCCACCTATGTTTACAAGTCACCACCTCCTCCCCC
ATACTACTACAAGTCTCCACCACCACCGAAACATGTAGTGAACCCCCCATACTATTACAAGTCTC
CACCACCACCAAGTCCCACC
Found at i:550797 original size:36 final size:36
Alignment explanation
Indices: 550744--550819 Score: 116
Period size: 36 Copynumber: 2.1 Consensus size: 36
550734 TACTACAAGT
** * *
550744 CACCACCACCAGTACCCACTTATGTTTACAAGTCAC
1 CACCACCACCACCACCCACCTATATTTACAAGTCAC
550780 CACCACCACCACCACCCACCTATATTTACAAGTCAC
1 CACCACCACCACCACCCACCTATATTTACAAGTCAC
550816 CACC
1 CACC
550820 TCCTCCCCCA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.32, C:0.45, G:0.05, T:0.18
Consensus pattern (36 bp):
CACCACCACCACCACCCACCTATATTTACAAGTCAC
Found at i:550819 original size:30 final size:30
Alignment explanation
Indices: 550783--550855 Score: 78
Period size: 30 Copynumber: 2.4 Consensus size: 30
550773 AAGTCACCAC
*
550783 CACCACCACCACCCACC-TA-TATTTACAAGT
1 CACCACCACCACCC-CCATACTA-CTACAAGT
* *
550813 CACCACCTCCTCCCCCATACTACTACAAGT
1 CACCACCACCACCCCCATACTACTACAAGT
*
550843 CTCCACCACCACC
1 CACCACCACCACC
550856 GAAACATGTG
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
29 2 0.06
30 31 0.89
31 2 0.06
ACGTcount: A:0.29, C:0.51, G:0.03, T:0.18
Consensus pattern (30 bp):
CACCACCACCACCCCCATACTACTACAAGT
Found at i:550990 original size:111 final size:112
Alignment explanation
Indices: 550769--551016 Score: 297
Period size: 111 Copynumber: 2.2 Consensus size: 112
550759 CCACTTATGT
* *
550769 TTACAAGTCACCACCACCACCACCACCCACCTATATTTACAAGTCACCACCTCCTCCCCCATACT
1 TTACAAGTCTCCACCACCACCAACACCCACCTATATTTACAAGTCACCACCTCCT--CCCATACT
* * * * *
550834 ACTACAAGTCTCCACCACCACCGAAACATGTGGTGAATCCCCCATACTA
64 ACTACAAATCTCCACCACCACCGAAACATCTGCTCAACCCCCCATACTA
** *
550883 TTACAAGTCTCCACCACCACCAAGTCCCACCTATGTTTACAAGTCACCACCTCCT-CCATACTAC
1 TTACAAGTCTCCACCACCACCAACACCCACCTATATTTACAAGTCACCACCTCCTCCCATACTAC
** *
550947 TACAAATCTCCACCACCACC-AGTTCA-CT-CTCCACCACCACCATACTA
66 TACAAATCTCCACCACCACCGA-AACATCTGCTCAACC-CC-CCATACTA
*
550994 CTACAAGTCTCCACCACCACCAA
1 TTACAAGTCTCCACCACCACCAA
551017 AACACGTCGA
Statistics
Matches: 117, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
109 3 0.03
110 4 0.03
111 60 0.51
114 50 0.43
ACGTcount: A:0.31, C:0.44, G:0.06, T:0.20
Consensus pattern (112 bp):
TTACAAGTCTCCACCACCACCAACACCCACCTATATTTACAAGTCACCACCTCCTCCCATACTAC
TACAAATCTCCACCACCACCGAAACATCTGCTCAACCCCCCATACTA
Found at i:551004 original size:27 final size:27
Alignment explanation
Indices: 550920--551063 Score: 116
Period size: 27 Copynumber: 5.8 Consensus size: 27
550910 CACCTATGTT
* * *
550920 TACAAGTCACCACCTCCTCCATACTAC
1 TACAAGTCTCCACCACCACCATACTAC
*
550947 TACAAATCTCCACCACCACCAGT--T-C
1 TACAAGTCTCCACCACCACCA-TACTAC
550972 -AC---TCTCCACCACCACCATACTAC
1 TACAAGTCTCCACCACCACCATACTAC
550995 TACAAGTCTCCACCACCACCA-A--A-
1 TACAAGTCTCCACCACCACCATACTAC
* ** *
551018 -ACACGTC-GAACAACCACCATACTAC
1 TACAAGTCTCCACCACCACCATACTAC
551043 TACAAGTCTCCACCACCACCA
1 TACAAGTCTCCACCACCACCA
551064 AGCCCTACCT
Statistics
Matches: 91, Mismatches: 12, Indels: 28
0.69 0.09 0.21
Matches are distributed among these distances:
20 1 0.01
21 24 0.26
22 8 0.09
23 1 0.01
24 6 0.07
25 1 0.01
26 8 0.09
27 41 0.45
28 1 0.01
ACGTcount: A:0.34, C:0.45, G:0.04, T:0.17
Consensus pattern (27 bp):
TACAAGTCTCCACCACCACCATACTAC
Found at i:551007 original size:24 final size:24
Alignment explanation
Indices: 550980--551060 Score: 76
Period size: 24 Copynumber: 3.4 Consensus size: 24
550970 TCACTCTCCA
550980 CCACCACCATACTACTACAAGTCT
1 CCACCACCATACTACTACAAGTCT
* ** * *
551004 CCACCACC--ACCAAAACACGTCGAA
1 CCACCACCATACTACTACAAGTC--T
*
551028 CAACCACCATACTACTACAAGTCT
1 CCACCACCATACTACTACAAGTCT
551052 CCACCACCA
1 CCACCACCA
551061 CCAAGCCCTA
Statistics
Matches: 41, Mismatches: 12, Indels: 8
0.67 0.20 0.13
Matches are distributed among these distances:
22 9 0.22
24 23 0.56
26 9 0.22
ACGTcount: A:0.37, C:0.44, G:0.05, T:0.14
Consensus pattern (24 bp):
CCACCACCATACTACTACAAGTCT
Found at i:551034 original size:48 final size:48
Alignment explanation
Indices: 550938--551064 Score: 175
Period size: 48 Copynumber: 2.6 Consensus size: 48
550928 ACCACCTCCT
* *** * *
550938 CCATACTACTACAAATCTCCACCACCACCAGTTCACTCTCCACCACCA
1 CCATACTACTACAAGTCTCCACCACCACCAAAACACTCTCAACAACCA
*
550986 CCATACTACTACAAGTCTCCACCACCACCAAAACACGTC-GAACAACCA
1 CCATACTACTACAAGTCTCCACCACCACCAAAACAC-TCTCAACAACCA
551034 CCATACTACTACAAGTCTCCACCACCACCAA
1 CCATACTACTACAAGTCTCCACCACCACCAA
551065 GCCCTACCTA
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
48 69 0.97
49 2 0.03
ACGTcount: A:0.35, C:0.45, G:0.04, T:0.16
Consensus pattern (48 bp):
CCATACTACTACAAGTCTCCACCACCACCAAAACACTCTCAACAACCA
Found at i:551252 original size:48 final size:48
Alignment explanation
Indices: 551197--552232 Score: 478
Period size: 48 Copynumber: 21.7 Consensus size: 48
551187 AGAACAACCC
* * * *
551197 CCATACTACTACAAGTCTCCTCCCCCGCCATCACCATCTCCTCCTCCA
1 CCATACTACTACAAATCTCCACCACCACCATCACCATCTCCTCCTCCA
* * * *
551245 CCATACTATTACAAATCCCCGCCACCACCAGT--CCACTCTCCACCTCCA
1 CCATACTACTACAAATCTCCACCACCACCA-TCACCA-TCTCCTCCTCCA
* * * *
551293 CCATACTACTACAAGTCTCCTCCACCACCATCGCCATCTCCTCCTCCT
1 CCATACTACTACAAATCTCCACCACCACCATCACCATCTCCTCCTCCA
* * * * *
551341 CCATACTATTACAAATCCCCGCCACCTCCA--ATCCACTCTCCACCTCCA
1 CCATACTACTACAAATCTCCACCACCACCATCA-CCA-TCTCCTCCTCCA
* * * * **** **
551389 CCATACTACTACAAGTCCCCACCACCGCCACCAAAACACGAAGAGCAAC-CC-
1 CCATACTACTACAAATCTCCACCA---CCACC--ATCACCATCTCCTCCTCCA
* *
551440 CCATACTACTACAAATCTCCTCCACCACCATCGCCATCTCCTCCT---
1 CCATACTACTACAAATCTCCACCACCACCATCACCATCTCCTCCTCCA
* * *
551485 CCATACTATTACAAATCCCCACCACCACCAGT--CCACTCTCCACCTCCA
1 CCATACTACTACAAATCTCCACCACCACCA-TCACCA-TCTCCTCCTCCA
* * * * * **** **
551533 CTATACTACTACAAGTCCCCACCACCGCCACCAAAACACGAAGAGCAAC-CC-
1 CCATACTACTACAAATCTCCACCA---CCACC--ATCACCATCTCCTCCTCCA
*
551584 CCATACTACTACAAATCTCCTCCACCACCATCACCATCTCCTCCTCCA
1 CCATACTACTACAAATCTCCACCACCACCATCACCATCTCCTCCTCCA
* * * *
551632 CCATACTATTACAAATCCCCACCACCACCGGT--CCACTCTCCACCTCCA
1 CCATACTACTACAAATCTCCACCACCACC-ATCACCA-TCTCCTCCTCCA
* * * * **** **
551680 CCATACTACTACAAGTCCCCACCACCACCAAAACACGAAGAACAAC-CC-
1 CCATACTACTACAAATCTCCACCACCACC--ATCACCATCTCCTCCTCCA
* *
551728 CCATACTACTACAAATCTCCTCCACCACCATCGCCA--T-CTCCTCCA
1 CCATACTACTACAAATCTCCACCACCACCATCACCATCTCCTCCTCCA
* * *
551773 CCATACTATTACAAATCTCCACCACCACCAGT--CCACTCTTCACCTCCA
1 CCATACTACTACAAATCTCCACCACCACCA-TCACCA-TCTCCTCCTCCA
* * * *
551821 CCATACTACTACAAGTCTCCACCACCACCAGT--CCACTCCCCTCCGCCG
1 CCATACTACTACAAATCTCCACCACCACCA-TCACCA-TCTCCTCCTCCA
* * * *
551869 CCCTACTACTACAAGTCTCCACC-CCACCAGTTCA-C-TCCCCTCCACCA
1 CCATACTACTACAAATCTCCACCACCACCA--TCACCATCTCCTCCTCCA
* * *** **
551916 CCATACTACTACAAATCACC-CCACCTCCAGT-A--AAGGCC-CCAGCA
1 CCATACTACTACAAATCTCCACCACCACCA-TCACCATCTCCTCCTCCA
* * * * * *
551960 CC-TATCTACCATTACAACTCTCCTCCTCCACCATCACCATCACCTCCACCC
1 CCATA-CTA-C--TACAAATCTCCACCACCACCATCACCATCTCCTCCTCCA
* * * *
552011 CCATACTACTACAAGTC-CCACCACCTCCATCAACATATCCTCCTCCA
1 CCATACTACTACAAATCTCCACCACCACCATCACCATCTCCTCCTCCA
* * * * *
552058 CCATACTACTACAAATCACCCCCACCACCAGTTCA--TTCTCCACCACCA
1 CCATACTACTACAAATCTCCACCACCACCA--TCACCATCTCCTCCTCCA
* * * * * * ** *
552106 CCATACTACTACAAATCACCCCCACCTCCCGTGA--AGGCTCCAGCACCTA
1 CCATACTACTACAAATCTCCACCACC-ACCATCACCA-TCTCCTCCTCC-A
* * * * * *
552155 -CATACCACTACAACTC-CCCCCTCCACCATCACCATCTCCCCCTCCC
1 CCATACTACTACAAATCTCCACCACCACCATCACCATCTCCTCCTCCA
* *
552201 CCCTACTACTACAAATCTCCCCCACCACCATC
1 CCATACTACTACAAATCTCCACCACCACCATC
552233 TCCCTCACCC
Statistics
Matches: 760, Mismatches: 163, Indels: 130
0.72 0.15 0.12
Matches are distributed among these distances:
43 4 0.01
44 18 0.02
45 67 0.09
46 26 0.03
47 128 0.17
48 416 0.55
49 11 0.01
50 10 0.01
51 61 0.08
52 6 0.01
53 8 0.01
54 4 0.01
55 1 0.00
ACGTcount: A:0.28, C:0.49, G:0.04, T:0.19
Consensus pattern (48 bp):
CCATACTACTACAAATCTCCACCACCACCATCACCATCTCCTCCTCCA
Found at i:551324 original size:96 final size:96
Alignment explanation
Indices: 551197--552230 Score: 586
Period size: 96 Copynumber: 10.8 Consensus size: 96
551187 AGAACAACCC
* * * * *
551197 CCATACTACTACAAGTCTCCTCCCCCGCCATCACCATCTCCTCCTCCACCATACTATTACAAATC
1 CCATACTACTACAAGTCTCCACCACCACCATCACCATCTCCACCTCCACCATACTACTACAAATC
*
551262 CCCGCCACCACCAGTCCACTCTCCACCTCCA
66 CCCACCACCACCAGTCCACTCTCCACCTCCA
* * * * *
551293 CCATACTACTACAAGTCTCCTCCACCACCATCGCCATCTCCTCCTCCTCCATACTATTACAAATC
1 CCATACTACTACAAGTCTCCACCACCACCATCACCATCTCCACCTCCACCATACTACTACAAATC
* * *
551358 CCCGCCACCTCCAATCCACTCTCCACCTCCA
66 CCCACCACCACCAGTCCACTCTCCACCTCCA
* * * **** *
551389 CCATACTACTACAAGTCCCCACCACCGCCACCAAAACACGAAGAGCAAC-CC-CCATACTACTAC
1 CCATACTACTACAAGTCTCCACCA---CCACC--ATCACCATCTCCACCTCCACCATACTACTAC
* * *
551452 AAATCTCCTCCACCACCA-TCGC-CATCT---CCTCCT
61 AAATCCCCACCACCACCAGTC-CAC-TCTCCACCTCCA
* * * * *
551485 CCATACTATTACAAATCCCCACCACCACCAGT--CCACTCTCCACCTCCACTATACTACTACAAG
1 CCATACTACTACAAGTCTCCACCACCACCA-TCACCA-TCTCCACCTCCACCATACTACTACAAA
* * *** ** *
551548 TCCCCACCACCGCCA--CCAAAACACGAAGAGCAACCC
64 TCCCCACCACCACCAGTCC---ACTC-TCCA-CCTCCA
* * * *
551584 CCATACTACTACAAATCTCCTCCACCACCATCACCATCTCCTCCTCCACCATACTATTACAAATC
1 CCATACTACTACAAGTCTCCACCACCACCATCACCATCTCCACCTCCACCATACTACTACAAATC
*
551649 CCCACCACCACCGGTCCACTCTCCACCTCCA
66 CCCACCACCACCAGTCCACTCTCCACCTCCA
* * * **** *
551680 CCATACTACTACAAGTCCCCACCACCACCAAAACACGAAGAACAAC-CC-CCATACTACTACAAA
1 CCATACTACTACAAGTCTCCACCACCACC--ATCACCATCTCCACCTCCACCATACTACTACAAA
* *
551743 TCTCCTCCACCACCA-TCGC-CATCT---CCTCCA
64 TCCCCACCACCACCAGTC-CAC-TCTCCACCTCCA
* * * *
551773 CCATACTATTACAAATCTCCACCACCACCAGT--CCACTCTTCACCTCCACCATACTACTACAAG
1 CCATACTACTACAAGTCTCCACCACCACCA-TCACCA-TCTCCACCTCCACCATACTACTACAAA
* * * * *
551836 TCTCCACCACCACCAGTCCACTCCCCTCCGCCG
64 TCCCCACCACCACCAGTCCACTCTCCACCTCCA
* * * *
551869 CCCTACTACTACAAGTCTCCACC-CCACCAGTTCA-C-TCCCCTCCACCACCATACTACTACAAA
1 CCATACTACTACAAGTCTCCACCACCACCA--TCACCATCTCCACCTCCACCATACTACTACAAA
* * ** ** * * *
551931 TCACC-CCACCTCCAGTAAAGGCCCCAGCACCTA
64 TCCCCACCACCACCAGTCCACTCTCCACCTCC-A
* * * * * * * * * * *
551964 TC-TACCATTACAACTCTCCTCCTCCACCATCACCATCACCTCCACCCCCATACTACTACAAGT-
1 CCATACTACTACAAGTCTCCACCACCACCATCACCATCTCCACCTCCACCATACTACTACAAATC
* * * *
552027 CCCACCACCTCCA-TCAACATATCCTCCTCCA
66 CCCACCACCACCAGTCCAC-TCTCCACCTCCA
* * * * *
552058 CCATACTACTACAAATCACCCCCACCACCAGTTCA--TTCTCCACCACCACCATACTACTACAAA
1 CCATACTACTACAAGTCTCCACCACCACCA--TCACCATCTCCACCTCCACCATACTACTACAAA
* * ** ** * *
552121 TCACCC-CCACCTCCCGTGAAGGCTCCAGCACCTA
64 TC-CCCACCACCACCAGTCCACTCTCCACCTCC-A
* * * * * * *
552155 -CATACCACTACAACTC-CCCCCTCCACCATCACCATCTCCCCCTCCCCCCTACTACTACAAATC
1 CCATACTACTACAAGTCTCCACCACCACCATCACCATCTCCACCTCCACCATACTACTACAAATC
552218 TCCC-CCACCACCA
66 -CCCACCACCACCA
552231 TCTCCCTCAC
Statistics
Matches: 729, Mismatches: 154, Indels: 111
0.73 0.15 0.11
Matches are distributed among these distances:
90 4 0.01
91 9 0.01
92 5 0.01
93 99 0.14
94 46 0.06
95 173 0.24
96 251 0.34
97 14 0.02
98 14 0.02
99 101 0.14
100 5 0.01
101 8 0.01
ACGTcount: A:0.28, C:0.49, G:0.04, T:0.18
Consensus pattern (96 bp):
CCATACTACTACAAGTCTCCACCACCACCATCACCATCTCCACCTCCACCATACTACTACAAATC
CCCACCACCACCAGTCCACTCTCCACCTCCA
Found at i:551396 original size:144 final size:144
Alignment explanation
Indices: 551233--552119 Score: 844
Period size: 144 Copynumber: 6.2 Consensus size: 144
551223 GCCATCACCA
* * * * * ** ** *
551233 TCTCCTCCTCCACCATACTATTACAAATCCCCGCCACCACCAGTCCACTC-TCCACCTCCACCAT
1 TCTCCACCTCCACCATACTACTACAAGTCCCCACCACCACCA-TCCACACGAACACAACCCCCAT
* * *
551297 ACTACTACAAGTCTCCTCCACCACCATCGCCATCTCCTCCTCCTCCATACTATTACAAATCCCCG
65 ACTACTACAAATCTCCTCCACCACCATCGCCATCTCCTCCTCCACCATACTATTACAAATCCCCA
* *
551362 CCACCTCCAATCCAC
130 CCACCACCAGTCCAC
* *
551377 TCTCCACCTCCACCATACTACTACAAGTCCCCACCACCGCCA-CCAAAACACGAAGAGCAACCCC
1 TCTCCACCTCCACCATACTACTACAAGTCCCCACCACCACCATCC---ACACGAACA-CAACCCC
551441 CATACTACTACAAATCTCCTCCACCACCATCGCCATCTCCTCCT---CCATACTATTACAAATCC
62 CATACTACTACAAATCTCCTCCACCACCATCGCCATCTCCTCCTCCACCATACTATTACAAATCC
551503 CCACCACCACCAGTCCAC
127 CCACCACCACCAGTCCAC
* * *
551521 TCTCCACCTCCACTATACTACTACAAGTCCCCACCACCGCCA-CCAAAACACGAAGAGCAACCCC
1 TCTCCACCTCCACCATACTACTACAAGTCCCCACCACCACCATCC---ACACGAACA-CAACCCC
*
551585 CATACTACTACAAATCTCCTCCACCACCATCACCATCTCCTCCTCCACCATACTATTACAAATCC
62 CATACTACTACAAATCTCCTCCACCACCATCGCCATCTCCTCCTCCACCATACTATTACAAATCC
*
551650 CCACCACCACCGGTCCAC
127 CCACCACCACCAGTCCAC
** *
551668 TCTCCACCTCCACCATACTACTACAAGTCCCCACCACCACCA-AAACACGAAGAACAACCCCCAT
1 TCTCCACCTCCACCATACTACTACAAGTCCCCACCACCACCATCCACACGAA-CACAACCCCCAT
*
551732 ACTACTACAAATCTCCTCCACCACCATCGCCA--T-CTCCTCCACCATACTATTACAAATCTCCA
65 ACTACTACAAATCTCCTCCACCACCATCGCCATCTCCTCCTCCACCATACTATTACAAATCCCCA
551794 CCACCACCAGTCCAC
130 CCACCACCAGTCCAC
* * * ** * **
551809 TCTTCACCTCCACCATACTACTACAAGTCTCCACCACCACCAGTCCACTC-CCCTCCGCCGCCC-
1 TCTCCACCTCCACCATACTACTACAAGTCCCCACCACCACCA-TCCACACGAACACAACC-CCCA
* * * * * * *
551872 TACTACTACAAGTCTCCACC-CCACCA--GTTCACTCCCCTCCACCACCATACTACTACAAATCA
64 TACTACTACAAATCTCCTCCACCACCATCG-CCA-TCTCCTCCTCCACCATACTATTACAAATCC
* ** *
551934 CC-CCACCTCCAGTAAAG
127 CCACCACCACCAGTCCAC
* * * * * * * * * * * * * *
551951 GCCCCAGCACCTATC-TACCATTACAACTCTCCTCCTCCACCAT-CACCATC-ACCTCCACCCCC
1 TCTCCACCTCC-ACCATACTACTACAAGTCCCCACCACCACCATCCA-CA-CGAACACAACCCCC
* * * ** * *
552013 ATACTACTACAAGTC-CCACCACCTCCATCAACATATCCTCCTCCACCATACTACTACAAATCAC
63 ATACTACTACAAATCTCCTCCACCACCATCGCCATCTCCTCCTCCACCATACTATTACAAATC-C
* *
552077 CC-CCACCACCAGTTCAT
127 CCACCACCACCAGTCCAC
*
552094 TCTCCACCACCACCATACTACTACAA
1 TCTCCACCTCCACCATACTACTACAA
552120 ATCACCCCCA
Statistics
Matches: 637, Mismatches: 80, Indels: 53
0.83 0.10 0.07
Matches are distributed among these distances:
138 1 0.00
139 2 0.00
140 8 0.01
141 113 0.18
142 100 0.16
143 62 0.10
144 224 0.35
145 4 0.01
146 1 0.00
147 122 0.19
ACGTcount: A:0.29, C:0.48, G:0.04, T:0.19
Consensus pattern (144 bp):
TCTCCACCTCCACCATACTACTACAAGTCCCCACCACCACCATCCACACGAACACAACCCCCATA
CTACTACAAATCTCCTCCACCACCATCGCCATCTCCTCCTCCACCATACTATTACAAATCCCCAC
CACCACCAGTCCAC
Found at i:551991 original size:142 final size:143
Alignment explanation
Indices: 551830--552089 Score: 327
Period size: 142 Copynumber: 1.8 Consensus size: 143
551820 ACCATACTAC
* * *
551830 TACAAGTCTCCACCACCACCAGT--CCACTCCCCTCCGCCGCCC-TACTACTACAAGTCTCCACC
1 TACAACTCTCCACCACCACCA-TCACCA-TCACCTCCACC-CCCATACTACTACAAGTC-CCACC
* *
551892 -CCACCAGTTC-AC-TCCCCTCCACCACCATACTACTACAAATCA-CCCCACCTCCAGTAAAGGC
62 ACCACCA--TCAACATACCCTCCACCACCATACTACTACAAATCACCCCCACCACCAGTAAAGGC
551953 CCCAGCACCTATCTACCAT
125 CCCAGCACCTATCTACCAT
* * *
551972 TACAACTCTCCTCCTCCACCATCACCATCACCTCCACCCCCATACTACTACAAGTCCCACCACCT
1 TACAACTCTCCACCACCACCATCACCATCACCTCCACCCCCATACTACTACAAGTCCCACCACCA
* *
552037 CCATCAACATATCCTCCTCCACCATACTACTACAAATCACCCCCACCACCAGT
66 CCATCAACATACCCTCCACCACCATACTACTACAAATCACCCCCACCACCAGT
552090 TCATTCTCCA
Statistics
Matches: 101, Mismatches: 10, Indels: 13
0.81 0.08 0.10
Matches are distributed among these distances:
140 2 0.02
141 11 0.11
142 73 0.72
143 15 0.15
ACGTcount: A:0.27, C:0.50, G:0.05, T:0.18
Consensus pattern (143 bp):
TACAACTCTCCACCACCACCATCACCATCACCTCCACCCCCATACTACTACAAGTCCCACCACCA
CCATCAACATACCCTCCACCACCATACTACTACAAATCACCCCCACCACCAGTAAAGGCCCCAGC
ACCTATCTACCAT
Found at i:552082 original size:24 final size:24
Alignment explanation
Indices: 552055--552131 Score: 68
Period size: 24 Copynumber: 3.2 Consensus size: 24
552045 ATATCCTCCT
552055 CCACCATACTACTACAAATCACCC
1 CCACCATACTACTACAAATCACCC
* * * ** *
552079 CCACC--ACCAGTTCATTCTCCACCA
1 CCACCATACTACTACA-AAT-CACCC
552103 CCACCATACTACTACAAATCACCC
1 CCACCATACTACTACAAATCACCC
552127 CCACC
1 CCACC
552132 TCCCGTGAAG
Statistics
Matches: 37, Mismatches: 12, Indels: 8
0.65 0.21 0.14
Matches are distributed among these distances:
22 6 0.16
23 1 0.03
24 23 0.62
25 1 0.03
26 6 0.16
ACGTcount: A:0.32, C:0.49, G:0.01, T:0.17
Consensus pattern (24 bp):
CCACCATACTACTACAAATCACCC
Found at i:552175 original size:95 final size:96
Alignment explanation
Indices: 551907--552226 Score: 280
Period size: 95 Copynumber: 3.4 Consensus size: 96
551897 AGTTCACTCC
* * *
551907 CCTCCACCACCATACTACTACAAATCA-CCCCACCTCCAGTAAAGGCCCCAGCACCTATC-TACC
1 CCTCCACCACCATACTACTACAAATCACCCCCACCTCCCGTAAAGGCTCCAGCACCTACCATACC
* * * *
551970 ATTACAACTCTCCTCCTCCACCATCACCATCA
66 ACTACAACTCACCCCCTCCACCATCA-CATCT
* * * * ** ** *
552002 CCTCCACCCCCATACTACTACAAGTC-CCACCACCT-CCATCAACA-TATCCTCCTCC-ACCATA
1 CCTCCACCACCATACTACTACAAATCACCCCCACCTCCCGT-AA-AGGCTCCAGCACCTACCATA
* * * *
552063 CTACTACAAATCACCCCCACCACCAGTTCA-TTCT
64 CCACTACAACTCACCCCCTCCACCA--TCACATCT
* *
552097 CCACCACCACCATACTACTACAAATCACCCCCACCTCCCGTGAAGGCTCCAGCACCTA-CATACC
1 CCTCCACCACCATACTACTACAAATCACCCCCACCTCCCGTAAAGGCTCCAGCACCTACCATACC
552161 ACTACAACTC-CCCCCTCCACCATCACCATCT
66 ACTACAACTCACCCCCTCCACCATCA-CATCT
* * * * *
552192 CCCCCTCCCCCCTACTACTACAAATCTCCCCCACC
1 CCTCCACCACCATACTACTACAAATCACCCCCACC
552227 ACCATCTCCC
Statistics
Matches: 173, Mismatches: 40, Indels: 24
0.73 0.17 0.10
Matches are distributed among these distances:
93 3 0.02
94 4 0.02
95 129 0.75
96 30 0.17
97 7 0.04
ACGTcount: A:0.28, C:0.50, G:0.03, T:0.18
Consensus pattern (96 bp):
CCTCCACCACCATACTACTACAAATCACCCCCACCTCCCGTAAAGGCTCCAGCACCTACCATACC
ACTACAACTCACCCCCTCCACCATCACATCT
Found at i:552253 original size:42 final size:41
Alignment explanation
Indices: 552175--552254 Score: 99
Period size: 42 Copynumber: 1.9 Consensus size: 41
552165 CAACTCCCCC
*
552175 CTCCACCATCACCATCTCCCCCTCCCCCCTACTACTACAAAT
1 CTCCACCACCACCATCT-CCCCTCCCCCCTACTACTACAAAT
* *
552217 CTCCCCCACCACCATCT-CCCTCACCCCCTCCATACTAC
1 CTCCACCACCACCATCTCCCCTC-CCCCCTAC-TACTAC
552255 TACCACTCAC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 5 0.15
41 7 0.21
42 21 0.64
ACGTcount: A:0.21, C:0.59, G:0.00, T:0.20
Consensus pattern (41 bp):
CTCCACCACCACCATCTCCCCTCCCCCCTACTACTACAAAT
Found at i:552290 original size:143 final size:142
Alignment explanation
Indices: 552012--552281 Score: 305
Period size: 143 Copynumber: 1.9 Consensus size: 142
552002 CCTCCACCCC
* * * *
552012 CATACTACTACAAGTCCCACCACCTCCATCAACATATCCTCCTCCACCATACTACTACAAATCAC
1 CATACCACTACAACTCCCACCACCACCATCAACATATCCCCCTCCACCATACTACTACAAATCAC
* * *
552077 CCCCACCACCAGTTCATTCTCCACCACCACCATACTACTACAAATCACCCCCACCTCCCGTGAAG
66 CCCCACCACCAGTTCA-CCTCCACCACCACCATACTACTACAAATCACCCCCACCACCCGTGAAA
*
552142 GCTCCAGCACCTA
130 CCTCCAGCACCTA
* * * * * * *
552155 CATACCACTACAACTCCCCCCTCCACCATCACCATCTCCCCCTCCCCCCTACTACTACAAATCTC
1 CATACCACTACAACTCCCACCACCACCATCAACATATCCCCCTCCACCATACTACTACAAATCAC
* * * * *
552220 CCCCACCACCA-TCTC-CCT-CACCCCCTCCATACTACTACCACTCACCTCCC-CCACCGGTGAA
66 CCCCACCACCAGT-TCACCTCCACCACCACCATACTACTACAAATCACC-CCCACCACCCGTGAA
552281 A
129 A
552282 TCACCTCCAC
Statistics
Matches: 106, Mismatches: 19, Indels: 7
0.80 0.14 0.05
Matches are distributed among these distances:
140 33 0.31
141 5 0.05
142 1 0.01
143 67 0.63
ACGTcount: A:0.27, C:0.51, G:0.04, T:0.19
Consensus pattern (142 bp):
CATACCACTACAACTCCCACCACCACCATCAACATATCCCCCTCCACCATACTACTACAAATCAC
CCCCACCACCAGTTCACCTCCACCACCACCATACTACTACAAATCACCCCCACCACCCGTGAAAC
CTCCAGCACCTA
Found at i:557211 original size:19 final size:19
Alignment explanation
Indices: 557182--557234 Score: 52
Period size: 22 Copynumber: 2.6 Consensus size: 19
557172 AAATAATAGC
557182 ATTACAACATTGTTTTGGGA
1 ATTA-AACATTGTTTTGGGA
*
557202 ATTAAACATTCCCATTTTGGGA
1 ATTAAACATT---GTTTTGGGA
*
557224 ATTAATCATTG
1 ATTAAACATTG
557235 CTCTTGTGGT
Statistics
Matches: 27, Mismatches: 3, Indels: 7
0.73 0.08 0.19
Matches are distributed among these distances:
19 6 0.22
20 4 0.15
22 17 0.63
ACGTcount: A:0.32, C:0.13, G:0.15, T:0.40
Consensus pattern (19 bp):
ATTAAACATTGTTTTGGGA
Found at i:559163 original size:38 final size:38
Alignment explanation
Indices: 559112--559209 Score: 178
Period size: 38 Copynumber: 2.6 Consensus size: 38
559102 AGAGAAGTGT
559112 GAGTTATCCATTTATTGGATGAAGTGAAATAAACATAA
1 GAGTTATCCATTTATTGGATGAAGTGAAATAAACATAA
559150 GAGTTATCCATTTATTGGATGAAGTGAAATAAACATAA
1 GAGTTATCCATTTATTGGATGAAGTGAAATAAACATAA
* *
559188 GAGCTCTCCATTTATTGGATGA
1 GAGTTATCCATTTATTGGATGA
559210 GAGAGATTAA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 58 1.00
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (38 bp):
GAGTTATCCATTTATTGGATGAAGTGAAATAAACATAA
Found at i:564572 original size:28 final size:28
Alignment explanation
Indices: 564540--564596 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
564530 CTCCCCATTT
*
564540 ATATTATGTCATCGAGTC-AGTGCTTGAA
1 ATATTATATCATCGAG-CAAGTGCTTGAA
* *
564568 ATATTATATCGTTGAGCAAGTGCTTGAA
1 ATATTATATCATCGAGCAAGTGCTTGAA
564596 A
1 A
564597 GCAACGGCAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 1 0.04
28 24 0.96
ACGTcount: A:0.32, C:0.12, G:0.21, T:0.35
Consensus pattern (28 bp):
ATATTATATCATCGAGCAAGTGCTTGAA
Found at i:565427 original size:20 final size:20
Alignment explanation
Indices: 565402--565468 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
565392 TTTTACGACT
565402 ATCGCAATGCGAATATGTA-A
1 ATCGCAATGCGAATATG-ACA
* *
565422 ATCGCAATGCGAGTATGACT
1 ATCGCAATGCGAATATGACA
* * *
565442 ATCGCAATGCGATTCTGACT
1 ATCGCAATGCGAATATGACA
565462 ATCGCAA
1 ATCGCAA
565469 CGAGATTCTG
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
19 1 0.02
20 41 0.98
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (20 bp):
ATCGCAATGCGAATATGACA
Found at i:565475 original size:20 final size:20
Alignment explanation
Indices: 565422--565555 Score: 187
Period size: 20 Copynumber: 6.7 Consensus size: 20
565412 GAATATGTAA
* * *
565422 ATCGCAATGCGAGTATGACT
1 ATCGCAACGCGATTCTGACT
*
565442 ATCGCAATGCGATTCTGACT
1 ATCGCAACGCGATTCTGACT
*
565462 ATCGCAACGAGATTCTGACT
1 ATCGCAACGCGATTCTGACT
*
565482 ATCGCAACGAGATTCTGACT
1 ATCGCAACGCGATTCTGACT
565502 ATCGCAACGCGATTCTGACT
1 ATCGCAACGCGATTCTGACT
* *
565522 GTCGCAACGCGATGCTGACT
1 ATCGCAACGCGATTCTGACT
*
565542 ATCGCAATGCGATT
1 ATCGCAACGCGATT
565556 TTCAAAGCGC
Statistics
Matches: 104, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 104 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (20 bp):
ATCGCAACGCGATTCTGACT
Found at i:568113 original size:20 final size:20
Alignment explanation
Indices: 568088--568150 Score: 90
Period size: 20 Copynumber: 3.1 Consensus size: 20
568078 TTTACTTTCA
568088 CAATGCGAAAATGACTATCG
1 CAATGCGAAAATGACTATCG
568108 CAATGCGAAAATGACTATCG
1 CAATGCGAAAATGACTATCG
* * **
568128 TAACGCGAATTTGACTATCG
1 CAATGCGAAAATGACTATCG
568148 CAA
1 CAA
568151 CGAAAGAATC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.22
Consensus pattern (20 bp):
CAATGCGAAAATGACTATCG
Found at i:568208 original size:20 final size:20
Alignment explanation
Indices: 568183--568276 Score: 161
Period size: 20 Copynumber: 4.7 Consensus size: 20
568173 GAAAATCACA
**
568183 TTGCGATAGTCAAATTCGCG
1 TTGCGATAGTCATTTTCGCG
568203 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCATTTTCGCG
*
568223 TTGCGATAGTCATTTTTGCG
1 TTGCGATAGTCATTTTCGCG
568243 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCATTTTCGCG
568263 TTGCGATAGTCATT
1 TTGCGATAGTCATT
568277 CGTGTTGCGA
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 70 1.00
ACGTcount: A:0.18, C:0.18, G:0.24, T:0.39
Consensus pattern (20 bp):
TTGCGATAGTCATTTTCGCG
Found at i:568227 original size:40 final size:39
Alignment explanation
Indices: 568183--568287 Score: 158
Period size: 40 Copynumber: 2.7 Consensus size: 39
568173 GAAAATCACA
568183 TTGCGATAGTCAAATTCGCGTTGCGATAGTCATTTTCGCG
1 TTGCGATAGTC-AATTCGCGTTGCGATAGTCATTTTCGCG
* *
568223 TTGCGATAGTCATTTTTGCGTTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCA-ATTCGCGTTGCGATAGTCATTTTCGCG
*
568263 TTGCGATAGTC-ATTCGTGTTGCGAT
1 TTGCGATAGTCAATTCGCGTTGCGAT
568288 TTTAAGTTTC
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 11 0.19
39 1 0.02
40 47 0.80
ACGTcount: A:0.17, C:0.18, G:0.26, T:0.39
Consensus pattern (39 bp):
TTGCGATAGTCAATTCGCGTTGCGATAGTCATTTTCGCG
Found at i:570314 original size:14 final size:14
Alignment explanation
Indices: 570280--570341 Score: 52
Period size: 14 Copynumber: 4.3 Consensus size: 14
570270 TTGCTTGTTT
*
570280 AATTGATTTATAAA
1 AATTGATTTGTAAA
*
570294 AACTGATTTGTAAA
1 AATTGATTTGTAAA
* *
570308 AGTTGATTTGTTTAA
1 AATTGATTTG-TAAA
* *
570323 TATTGATGTGTAAA
1 AATTGATTTGTAAA
570337 TAATT
1 -AATT
570342 CTTATTTGTG
Statistics
Matches: 36, Mismatches: 10, Indels: 3
0.73 0.20 0.06
Matches are distributed among these distances:
14 23 0.64
15 13 0.36
ACGTcount: A:0.39, C:0.02, G:0.15, T:0.45
Consensus pattern (14 bp):
AATTGATTTGTAAA
Found at i:570529 original size:20 final size:20
Alignment explanation
Indices: 570504--570740 Score: 114
Period size: 20 Copynumber: 12.8 Consensus size: 20
570494 GATTTTCTCA
*
570504 TTGCGATAGTCAAATACCCG
1 TTGCGATAGTCAAATTCCCG
* *
570524 TTGCGATAATCAAATTCGCG
1 TTGCGATAGTCAAATTCCCG
*
570544 TTGCGAT--T----TTCTCG
1 TTGCGATAGTCAAATTCCCG
**
570558 TTGCGATAGTCAAATAGCCG
1 TTGCGATAGTCAAATTCCCG
*
570578 TTGCGATAGTCAAATTCGCG
1 TTGCGATAGTCAAATTCCCG
* **
570598 TTGCGATAGACAAATTTGCG
1 TTGCGATAGTCAAATTCCCG
* **
570618 TTACGAT--T----TTTGCG
1 TTGCGATAGTCAAATTCCCG
* **
570632 TTGCGATAGTCATATTCGTG
1 TTGCGATAGTCAAATTCCCG
*
570652 TTGCGATAGTCAAATTCGCG
1 TTGCGATAGTCAAATTCCCG
***
570672 TTGCGAT--T----TTTGAG
1 TTGCGATAGTCAAATTCCCG
* * *
570686 TTGCGATAATCAAATTCGCA
1 TTGCGATAGTCAAATTCCCG
* *
570706 TTGCGATAGTTAAATTCGCG
1 TTGCGATAGTCAAATTCCCG
*
570726 TTGCGATATTCAAAT
1 TTGCGATAGTCAAAT
570741 GAATGTGAAA
Statistics
Matches: 170, Mismatches: 29, Indels: 36
0.72 0.12 0.15
Matches are distributed among these distances:
14 35 0.21
16 3 0.02
18 2 0.01
20 130 0.76
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (20 bp):
TTGCGATAGTCAAATTCCCG
Found at i:570553 original size:54 final size:54
Alignment explanation
Indices: 570490--570604 Score: 203
Period size: 54 Copynumber: 2.1 Consensus size: 54
570480 CGCGTTGAGT
570490 TTGCGATTTTCTCATTGCGATAGTCAAATACCCGTTGCGATAATCAAATTCGCG
1 TTGCGATTTTCTCATTGCGATAGTCAAATACCCGTTGCGATAATCAAATTCGCG
* * *
570544 TTGCGATTTTCTCGTTGCGATAGTCAAATAGCCGTTGCGATAGTCAAATTCGCG
1 TTGCGATTTTCTCATTGCGATAGTCAAATACCCGTTGCGATAATCAAATTCGCG
570598 TTGCGAT
1 TTGCGAT
570605 AGACAAATTT
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.34
Consensus pattern (54 bp):
TTGCGATTTTCTCATTGCGATAGTCAAATACCCGTTGCGATAATCAAATTCGCG
Found at i:570588 original size:74 final size:74
Alignment explanation
Indices: 570504--570678 Score: 239
Period size: 74 Copynumber: 2.4 Consensus size: 74
570494 GATTTTCTCA
* * *
570504 TTGCGATAGTCAAATACCCGTTGCGATA-ATCAAATTCGCGTTGCGATTTTCT-CGTTGCGATAG
1 TTGCGATAGTCAAATTCGCGTTGCGATAGA-CAAATTCGCGTTACGATTTT-TGCGTTGCGATAG
570567 TCAAATAGC-CG
64 TCAAAT-GCGCG
*
570578 TTGCGATAGTCAAATTCGCGTTGCGATAGACAAATTTGCGTTACGATTTTTGCGTTGCGATAGTC
1 TTGCGATAGTCAAATTCGCGTTGCGATAGACAAATTCGCGTTACGATTTTTGCGTTGCGATAGTC
* * *
570643 ATATTCGTG
66 AAATGCGCG
570652 TTGCGATAGTCAAATTCGCGTTGCGAT
1 TTGCGATAGTCAAATTCGCGTTGCGAT
570679 TTTTGAGTTG
Statistics
Matches: 91, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
73 2 0.02
74 88 0.97
75 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (74 bp):
TTGCGATAGTCAAATTCGCGTTGCGATAGACAAATTCGCGTTACGATTTTTGCGTTGCGATAGTC
AAATGCGCG
Found at i:570634 original size:54 final size:54
Alignment explanation
Indices: 570576--570732 Score: 233
Period size: 54 Copynumber: 2.9 Consensus size: 54
570566 GTCAAATAGC
* * *
570576 CGTTGCGATAGTCAAATTCGCGTTGCGATAGACAAATTTGCGTTACGATTTTTG
1 CGTTGCGATAGTCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGATTTTTG
* *
570630 CGTTGCGATAGTCATATTCGTGTTGCGATAGTCAAATTCGCGTTGCGATTTTTG
1 CGTTGCGATAGTCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGATTTTTG
* * * *
570684 AGTTGCGATAATCAAATTCGCATTGCGATAGTTAAATTCGCGTTGCGAT
1 CGTTGCGATAGTCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGAT
570733 ATTCAAATGA
Statistics
Matches: 92, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 92 1.00
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.36
Consensus pattern (54 bp):
CGTTGCGATAGTCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGATTTTTG
Found at i:570963 original size:140 final size:140
Alignment explanation
Indices: 570711--570980 Score: 513
Period size: 140 Copynumber: 1.9 Consensus size: 140
570701 TCGCATTGCG
*
570711 ATAGTTAAATTCGCGTTGCGATATTCAAATGAATGTGAAATAAGTGATAACAACTGAACATATCA
1 ATAGTCAAATTCGCGTTGCGATATTCAAATGAATGTGAAATAAGTGATAACAACTGAACATATCA
*
570776 TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACATAA
66 TAGAAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACATAA
570841 AATACACATA
131 AATACACATA
*
570851 ATAGTCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACATATCA
1 ATAGTCAAATTCGCGTTGCGATATTCAAATGAATGTGAAATAAGTGATAACAACTGAACATATCA
570916 TAGAAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACATAA
66 TAGAAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACATAA
570981 TACAACGTTT
Statistics
Matches: 127, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
140 127 1.00
ACGTcount: A:0.43, C:0.15, G:0.13, T:0.29
Consensus pattern (140 bp):
ATAGTCAAATTCGCGTTGCGATATTCAAATGAATGTGAAATAAGTGATAACAACTGAACATATCA
TAGAAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACATAA
AATACACATA
Found at i:571063 original size:18 final size:18
Alignment explanation
Indices: 571040--571074 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
571030 AAGCCGGTTG
*
571040 TGATTGGGATTTTGATTT
1 TGATTGCGATTTTGATTT
571058 TGATTGCGATTTTGATT
1 TGATTGCGATTTTGATT
571075 GCCTTTTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.03, G:0.26, T:0.54
Consensus pattern (18 bp):
TGATTGCGATTTTGATTT
Found at i:573130 original size:14 final size:14
Alignment explanation
Indices: 573111--573147 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
573101 TCCCGTGGTA
573111 TTTTCTTCGGGGAC
1 TTTTCTTCGGGGAC
*
573125 TTTTCTTCGGGGAT
1 TTTTCTTCGGGGAC
573139 TTCTTCTTC
1 TT-TTCTTC
573148 TTCAGGGTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.05, C:0.22, G:0.22, T:0.51
Consensus pattern (14 bp):
TTTTCTTCGGGGAC
Found at i:574258 original size:20 final size:20
Alignment explanation
Indices: 574200--574367 Score: 126
Period size: 20 Copynumber: 8.3 Consensus size: 20
574190 AAATTCAGTG
* * **
574200 TTGCGACAGTCAGAATCGTG
1 TTGCGATAGTCATAATCGCA
*
574220 TTGCGATAGTCAGAATCGCA
1 TTGCGATAGTCATAATCGCA
574240 TTGCGATAGTCATAATCGCA
1 TTGCGATAGTCATAATCGCA
* *
574260 TTGCGAT-TTACATATTCGCA
1 TTGCGATAGT-CATAATCGCA
* *
574280 TTGCGAT-TTACATATTCGCA
1 TTGCGATAGT-CATAATCGCA
* * *
574300 TTGCGATTA-ACATATTCACA
1 TTGCGA-TAGTCATAATCGCA
*
574320 TTGCGATAGTCGGAAAATCGCA
1 TTGCGATAGTC--ATAATCGCA
* * *
574342 ATGCGATAGTCAGAATCGCG
1 TTGCGATAGTCATAATCGCA
574362 TTGCGA
1 TTGCGA
574368 ATCTGGAAAC
Statistics
Matches: 126, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
19 3 0.02
20 106 0.84
21 1 0.01
22 16 0.13
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.30
Consensus pattern (20 bp):
TTGCGATAGTCATAATCGCA
Found at i:574279 original size:40 final size:40
Alignment explanation
Indices: 574235--574348 Score: 140
Period size: 40 Copynumber: 2.8 Consensus size: 40
574225 ATAGTCAGAA
*
574235 TCGCATTGCGATAGTCATAATCGCATTGCGATTTACATAT
1 TCGCATTGCGATAGTCATAATCGCATTGCGATTAACATAT
* *
574275 TCGCATTGCGAT-TTACATATTCGCATTGCGATTAACATAT
1 TCGCATTGCGATAGT-CATAATCGCATTGCGATTAACATAT
* * *
574315 TCACATTGCGATAGTCGGAAAATCGCAATGCGAT
1 TCGCATTGCGATAGTC--ATAATCGCATTGCGAT
574349 AGTCAGAATC
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
39 1 0.02
40 47 0.76
41 1 0.02
42 13 0.21
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32
Consensus pattern (40 bp):
TCGCATTGCGATAGTCATAATCGCATTGCGATTAACATAT
Found at i:577671 original size:26 final size:25
Alignment explanation
Indices: 577623--577675 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
577613 TTTTTAAAAA
*
577623 ATAAATAAATATGAAAAATCAAAATT
1 ATAAAAAAATATGAAAAATC-AAATT
*
577649 ATAAAAAAATAT-AAATATACAAATT
1 ATAAAAAAATATGAAAAAT-CAAATT
577674 AT
1 AT
577676 TACAGCTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.28
Consensus pattern (25 bp):
ATAAAAAAATATGAAAAATCAAATT
Found at i:584311 original size:15 final size:15
Alignment explanation
Indices: 584291--584327 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
584281 AGATGACTAG
584291 TTGGAATTTACTGTC
1 TTGGAATTTACTGTC
584306 TTGGAATTTACTGTC
1 TTGGAATTTACTGTC
584321 TTGGAAT
1 TTGGAAT
584328 GTTAGAGGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.22, C:0.11, G:0.22, T:0.46
Consensus pattern (15 bp):
TTGGAATTTACTGTC
Found at i:590380 original size:33 final size:33
Alignment explanation
Indices: 590249--590361 Score: 183
Period size: 33 Copynumber: 3.4 Consensus size: 33
590239 CACAACCCGG
* *
590249 TGCTAATCCCTATGGCCAACCCT-CACAGCCAAA
1 TGCTAATCCATATGGTCAA-CCTGCACAGCCAAA
590282 TGCTAATCCATATGGTCAACCTGCACAGCCAAA
1 TGCTAATCCATATGGTCAACCTGCACAGCCAAA
590315 TGCTAATCCATATGGTCAACCTGCACAGCCAAA
1 TGCTAATCCATATGGTCAACCTGCACAGCCAAA
*
590348 CGCTAATCCATATG
1 TGCTAATCCATATG
590362 CCCAAACCAT
Statistics
Matches: 76, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
32 3 0.04
33 73 0.96
ACGTcount: A:0.32, C:0.33, G:0.14, T:0.21
Consensus pattern (33 bp):
TGCTAATCCATATGGTCAACCTGCACAGCCAAA
Found at i:591149 original size:33 final size:33
Alignment explanation
Indices: 591111--591191 Score: 135
Period size: 33 Copynumber: 2.5 Consensus size: 33
591101 CTATGGGCAT
591111 GGGAATGGGGATGAACAACATGGGCATGAATCC
1 GGGAATGGGGATGAACAACATGGGCATGAATCC
* *
591144 TGGAATGGGGATGAACAACGTGGGCATGAATCC
1 GGGAATGGGGATGAACAACATGGGCATGAATCC
*
591177 GGGAATGAGGATGAA
1 GGGAATGGGGATGAA
591192 TATGGGAATG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.33, C:0.12, G:0.38, T:0.16
Consensus pattern (33 bp):
GGGAATGGGGATGAACAACATGGGCATGAATCC
Found at i:591619 original size:3 final size:3
Alignment explanation
Indices: 591611--591647 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
591601 CACGTTTGCT
591611 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
591648 CACTGCCTTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:594364 original size:16 final size:16
Alignment explanation
Indices: 594343--594373 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
594333 TATGTTGTGA
594343 GTTCTAGAATAGTTTT
1 GTTCTAGAATAGTTTT
594359 GTTCTAGAATAGTTT
1 GTTCTAGAATAGTTT
594374 GTTAGCTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.06, G:0.19, T:0.48
Consensus pattern (16 bp):
GTTCTAGAATAGTTTT
Found at i:597548 original size:31 final size:31
Alignment explanation
Indices: 597510--597665 Score: 244
Period size: 31 Copynumber: 5.0 Consensus size: 31
597500 CCCGAAGGAC
*
597510 CAGTCCATAGATCCCGAAGAACCTAGGTAAA
1 CAGTCCATAGATCCCGAAGAACATAGGTAAA
* *
597541 CAGTCCATATATCCCGAAGAACATAGTTAAA
1 CAGTCCATAGATCCCGAAGAACATAGGTAAA
597572 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
1 CAGTCCATA-GATCCCGAAGAACATAGGTAAA
597603 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
1 CAGTCCATA-GATCCCGAAGAACATAGGTAAA
*
597634 CAGTCCATATATCCCGAAGAACATAGGTAAA
1 CAGTCCATAGATCCCGAAGAACATAGGTAAA
597665 C
1 C
597666 CCTCGACCCT
Statistics
Matches: 117, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
31 117 1.00
ACGTcount: A:0.40, C:0.24, G:0.17, T:0.19
Consensus pattern (31 bp):
CAGTCCATAGATCCCGAAGAACATAGGTAAA
Found at i:598455 original size:64 final size:64
Alignment explanation
Indices: 598317--598475 Score: 187
Period size: 64 Copynumber: 2.5 Consensus size: 64
598307 TCTTTCAATG
* *
598317 AAAGTATGCATCGATGCACTACTGATGCATCGGTGCACAAAATGCATTCGATGTTGTATTATTA
1 AAAGTATGCATCGATGCACTACTAATGCATCGATGCACAAAATGCATTCGATGTTGTATTATTA
*** * ** * *
598381 CTGGTATGCATCGATGCACTACTTATGCATCGATGCATGAATTGCATTCGATGTTTTTATT-TTA
1 AAAGTATGCATCGATGCACTACTAATGCATCGATGCACAAAATGCATTCGATG-TTGTATTATTA
*
598445 AAAG-AGTGCATCGATGCACTACCAATGCATC
1 AAAGTA-TGCATCGATGCACTACTAATGCATC
598476 AAGACACCTT
Statistics
Matches: 79, Mismatches: 14, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
63 1 0.01
64 72 0.91
65 6 0.08
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (64 bp):
AAAGTATGCATCGATGCACTACTAATGCATCGATGCACAAAATGCATTCGATGTTGTATTATTA
Found at i:599009 original size:3 final size:3
Alignment explanation
Indices: 599001--599029 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
598991 TCTCGTACAT
599001 GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
599030 TGATGAAGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:607740 original size:21 final size:20
Alignment explanation
Indices: 607718--607835 Score: 71
Period size: 20 Copynumber: 5.8 Consensus size: 20
607708 AAGTTCCCAG
607718 AATCGCAACGCGATTATGAA
1 AATCGCAACGCGATTATGAA
* *
607738 GAATCGTAATGCGA-TA-GTACA
1 -AATCGCAACGCGATTATG-A-A
** * * *
607759 AATTCGCATTGCGATTTTCCAG
1 AA-TCGCAACGCGATTAT-GAA
*
607781 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGATTATGAA
**
607801 AATCGCAACGCGAACAT-ATA
1 AATCGCAACGCGATTATGA-A
607821 AATCGCAACGCGATT
1 AATCGCAACGCGATT
607836 CTAACTATCG
Statistics
Matches: 74, Mismatches: 16, Indels: 15
0.70 0.15 0.14
Matches are distributed among these distances:
19 2 0.03
20 36 0.49
21 32 0.43
22 3 0.04
23 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.22
Consensus pattern (20 bp):
AATCGCAACGCGATTATGAA
Found at i:607806 original size:20 final size:20
Alignment explanation
Indices: 607781--608056 Score: 177
Period size: 20 Copynumber: 13.7 Consensus size: 20
607771 GATTTTCCAG
*
607781 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGAATACGAA
* *
607801 AATCGCAACGCGAACA-TATA
1 AATCGCAACGCGAATACGA-A
* *
607821 AATCGCAACGCG-ATTCTAA
1 AATCGCAACGCGAATACGAA
* * * *
607840 CTATCGCAACGAGTATCCGTAA
1 -AATCGCAACGCGAATACG-AA
* * *
607862 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATACGAA
607882 AATCGCAACGAC-AATACGTAA
1 AATCGCAACG-CGAATACG-AA
* * *
607903 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATACGAA
*
607923 AATCGCAACGAGAATAC-ATA
1 AATCGCAACGCGAATACGA-A
* *
607943 AATCGCAACGCGTAT-CTGTA
1 AATCGCAACGCGAATAC-GAA
* *
607963 AATCGCAACGAGAATACGTA
1 AATCGCAACGCGAATACGAA
* * * *
607983 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGAATACGAA
608003 AATCGCAACGACG-ATACGTAA
1 AATCGCAACG-CGAATACG-AA
* * *
608024 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATACGAA
*
608044 AATCGCAATGCGA
1 AATCGCAACGCGA
608057 TTTTTAAAGT
Statistics
Matches: 204, Mismatches: 37, Indels: 30
0.75 0.14 0.11
Matches are distributed among these distances:
19 4 0.02
20 145 0.71
21 53 0.26
22 2 0.01
ACGTcount: A:0.38, C:0.25, G:0.18, T:0.18
Consensus pattern (20 bp):
AATCGCAACGCGAATACGAA
Found at i:607827 original size:40 final size:40
Alignment explanation
Indices: 607781--608051 Score: 309
Period size: 40 Copynumber: 6.7 Consensus size: 40
607771 GATTTTCCAG
* ** * *
607781 AATCGCAACGCGAATATGAAAATCGCAACGCGA-ACATATA
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGATACATA-A
* * *
607821 AATCGCAACGCG-ATTC-TAACTATCGCAACGAGTATCCGTAA
1 AATCGCAACGCGTATCCGTAA--ATCGCAACGAG-ATACATAA
* *
607862 AATCGCAACGCGTATCCGTAAATCGCAACGACAATACGTAA
1 AATCGCAACGCGTATCCGTAAATCGCAACGA-GATACATAA
607903 AATCGCAACGCGTATCCGTAAATCGCAACGAGAATACAT-A
1 AATCGCAACGCGTATCCGTAAATCGCAACGAG-ATACATAA
* *
607943 AATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGT-A
1 AATCGCAACGCGTATCCGTAAATCGCAACGAG-ATACATAA
* *
607983 AATCGCAATGCGTATCCGTAAATCGCAACGACGATACGTAA
1 AATCGCAACGCGTATCCGTAAATCGCAACGA-GATACATAA
608024 AATCGCAACGCGTATCCGTAAATCGCAA
1 AATCGCAACGCGTATCCGTAAATCGCAA
608052 TGCGATTTTT
Statistics
Matches: 205, Mismatches: 16, Indels: 19
0.85 0.07 0.08
Matches are distributed among these distances:
38 2 0.01
39 2 0.01
40 96 0.47
41 96 0.47
42 6 0.03
43 3 0.01
ACGTcount: A:0.38, C:0.25, G:0.18, T:0.18
Consensus pattern (40 bp):
AATCGCAACGCGTATCCGTAAATCGCAACGAGATACATAA
Found at i:607869 original size:81 final size:80
Alignment explanation
Indices: 607781--608056 Score: 317
Period size: 81 Copynumber: 3.4 Consensus size: 80
607771 GATTTTCCAG
* * * *
607781 AATCGCAACGCGAATATGAAAATCGCAACGCGAACATATAAATCGCAACGCG-ATTC-TAACTAT
1 AATCGCAACGCGTATCTGTAAATCGCAACGCGAACATATAAATCGCAACGCGTATCCGTAA--AT
*
607844 CGCAACGAGTATCCGTAA
64 CGCAACGAG-ATACGTAA
* * *
607862 AATCGCAACGCGTATCCGTAAATCGCAACGACAATACGTA-AAATCGCAACGCGTATCCGTAAAT
1 AATCGCAACGCGTATCTGTAAATCGCAACG-CGA-ACATATAAATCGCAACGCGTATCCGTAAAT
*
607926 CGCAACGAGAATACAT-A
64 CGCAACGAG-ATACGTAA
* * ** *
607943 AATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGTAAATCGCAATGCGTATCCGTAAATCG
1 AATCGCAACGCGTATCTGTAAATCGCAACGCGAACATATAAATCGCAACGCGTATCCGTAAATCG
608008 CAACGACGATACGTAA
66 CAACGA-GATACGTAA
* *
608024 AATCGCAACGCGTATCCGTAAATCGCAATGCGA
1 AATCGCAACGCGTATCTGTAAATCGCAACGCGA
608057 TTTTTAAAGT
Statistics
Matches: 166, Mismatches: 22, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
79 1 0.01
80 37 0.22
81 88 0.53
82 30 0.18
83 7 0.04
84 3 0.02
ACGTcount: A:0.38, C:0.25, G:0.18, T:0.18
Consensus pattern (80 bp):
AATCGCAACGCGTATCTGTAAATCGCAACGCGAACATATAAATCGCAACGCGTATCCGTAAATCG
CAACGAGATACGTAA
Found at i:607873 original size:41 final size:41
Alignment explanation
Indices: 607781--608051 Score: 340
Period size: 41 Copynumber: 6.7 Consensus size: 41
607771 GATTTTCCAG
* ** * * *
607781 AATCGCAACGCGAATATGAAAATCGCAACGCG-A-ACATATA
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTA-A
* * *
607821 AATCGCAACGCG-ATTC-TAACTATCGCAACGAGTATCCGTAA
1 AATCGCAACGCGTATCCGTAA--ATCGCAACGAGAATACGTAA
*
607862 AATCGCAACGCGTATCCGTAAATCGCAACGACAATACGTAA
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTAA
*
607903 AATCGCAACGCGTATCCGTAAATCGCAACGAGAATACAT-A
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTAA
*
607943 AATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGT-A
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTAA
*
607983 AATCGCAATGCGTATCCGTAAATCGCAACGACG-ATACGTAA
1 AATCGCAACGCGTATCCGTAAATCGCAACGA-GAATACGTAA
608024 AATCGCAACGCGTATCCGTAAATCGCAA
1 AATCGCAACGCGTATCCGTAAATCGCAA
608052 TGCGATTTTT
Statistics
Matches: 206, Mismatches: 17, Indels: 15
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.01
39 2 0.01
40 96 0.47
41 97 0.47
42 6 0.03
43 3 0.01
ACGTcount: A:0.38, C:0.25, G:0.18, T:0.18
Consensus pattern (41 bp):
AATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTAA
Found at i:608639 original size:20 final size:19
Alignment explanation
Indices: 608614--608685 Score: 81
Period size: 20 Copynumber: 3.6 Consensus size: 19
608604 TTCTAAACTT
608614 AAAATCGCAACATGAAAATG
1 AAAATCGCAACA-GAAAATG
608634 AAAATCGCAACACGAAAATG
1 AAAATCGCAACA-GAAAATG
** *
608654 ATTATCGCAATGAGAGAAATG
1 AAAATCGCAA-CAGA-AAATG
608675 AAAATCGCAAC
1 AAAATCGCAAC
608686 GCAAAACCAA
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
20 29 0.67
21 14 0.33
ACGTcount: A:0.51, C:0.17, G:0.17, T:0.15
Consensus pattern (19 bp):
AAAATCGCAACAGAAAATG
Found at i:608803 original size:13 final size:14
Alignment explanation
Indices: 608717--608806 Score: 65
Period size: 14 Copynumber: 5.9 Consensus size: 14
608707 GATTTTCATT
608717 TCGCGTTGCGATTC
1 TCGCGTTGCGATTC
* *
608731 TCTCGTTGCAATTTTC
1 TCGCGTTGCGA--TTC
608747 ATTTCGCGTTGCGATTC
1 ---TCGCGTTGCGATTC
*
608764 TCTCGTTGCGATTTC
1 TCGCGTTGCGA-TTC
608779 ATTTCGCGTTGCGATTC
1 ---TCGCGTTGCGATTC
608796 TC-CGTTGCGAT
1 TCGCGTTGCGAT
608807 GTCATTCCGC
Statistics
Matches: 61, Mismatches: 6, Indels: 19
0.71 0.07 0.22
Matches are distributed among these distances:
13 9 0.15
14 21 0.34
15 3 0.05
16 3 0.05
17 6 0.10
18 10 0.16
19 9 0.15
ACGTcount: A:0.10, C:0.26, G:0.22, T:0.42
Consensus pattern (14 bp):
TCGCGTTGCGATTC
Found at i:608805 original size:31 final size:32
Alignment explanation
Indices: 608710--608824 Score: 187
Period size: 33 Copynumber: 3.6 Consensus size: 32
608700 GCATTACGAT
*
608710 TTTCATTTCGCGTTGCGATTCTCTCGTTGCAA
1 TTTCATTTCGCGTTGCGATTCTCTCGTTGCGA
608742 TTTTCATTTCGCGTTGCGATTCTCTCGTTGCGA
1 -TTTCATTTCGCGTTGCGATTCTCTCGTTGCGA
608775 TTTCATTTCGCGTTGCGATTCTC-CGTTGCGA
1 TTTCATTTCGCGTTGCGATTCTCTCGTTGCGA
* *
608806 TGTCATTCCGCGTTGCGAT
1 TTTCATTTCGCGTTGCGAT
608825 AGTCATTCTC
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
31 25 0.32
32 23 0.29
33 31 0.39
ACGTcount: A:0.10, C:0.25, G:0.22, T:0.43
Consensus pattern (32 bp):
TTTCATTTCGCGTTGCGATTCTCTCGTTGCGA
Found at i:608841 original size:20 final size:18
Alignment explanation
Indices: 608792--608844 Score: 72
Period size: 18 Copynumber: 2.8 Consensus size: 18
608782 TCGCGTTGCG
608792 ATTCTCCGTTGCGATGTC
1 ATTCTCCGTTGCGATGTC
608810 ATTC-CGCGTTGCGATAGTC
1 ATTCTC-CGTTGCGAT-GTC
608829 ATTCTCTCGTTGCGAT
1 ATTCTC-CGTTGCGAT
608845 TTTCATTTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
17 1 0.03
18 13 0.42
19 7 0.23
20 10 0.32
ACGTcount: A:0.13, C:0.26, G:0.23, T:0.38
Consensus pattern (18 bp):
ATTCTCCGTTGCGATGTC
Done.