genome.fa.s8015.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008015.1 Hibiscus syriacus cultivar Beakdansim tig00110481_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  961110

Tables:   1   2   3   4   

This is table  4  of  4  ( 458 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
663301--663352	26	2.1	26	89	7	81	11	67	15	5	1.40
675313--675386	29	2.5	30	82	8	89	43	9	17	29	1.81
693268--693319	2	26.0	2	100	0	104	50	0	0	50	1.00
704886--705156	130	2.1	130	92	0	461	36	10	12	40	1.77
706859--706912	28	2.0	27	92	3	90	29	7	16	46	1.74
707381--707417	14	2.4	16	91	8	60	37	0	0	62	0.96
715937--715967	4	8.0	4	92	7	55	74	0	0	25	0.82
719206--719242	6	6.2	6	100	0	74	32	51	16	0	1.45
724270--724330	19	3.3	18	75	9	61	42	1	0	55	1.09
728728--728760	16	2.1	16	100	0	66	6	42	30	21	1.77
728747--728869	54	2.3	54	88	5	178	22	26	23	26	2.00
737015--737058	17	2.5	17	85	7	52	38	4	9	47	1.56
738724--738800	37	2.1	38	87	4	113	46	5	0	48	1.24
740978--741032	2	30.0	2	79	17	57	56	0	0	43	0.99
740978--741034	13	4.1	14	78	13	55	56	0	0	43	0.99
740981--741030	17	2.8	18	85	11	59	58	0	0	42	0.98
740978--741034	22	2.4	25	77	17	75	56	0	0	43	0.99
743245--743312	29	2.3	29	84	0	82	17	16	19	47	1.83
743492--743543	16	3.3	15	75	15	59	40	0	3	55	1.18
744515--744543	2	14.5	2	100	0	58	48	0	0	51	1.00
747290--747335	21	2.2	21	100	0	92	28	13	4	54	1.57
753748--753811	33	1.9	33	100	0	128	45	20	25	9	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
754311--754653	44	8.0	43	75	6	201	52	5	13	27	1.63
754309--754565	86	3.0	82	76	10	216	51	5	14	28	1.64
760259--760297	18	2.2	18	90	0	60	48	2	2	46	1.29
760823--760874	20	2.6	20	82	14	63	15	17	17	50	1.79
760870--760984	22	5.4	21	74	11	92	19	19	26	35	1.95
760934--761002	19	3.5	19	73	11	75	18	20	21	39	1.93
760913--761002	41	2.2	41	97	0	171	17	20	24	37	1.93
761706--761815	19	5.5	19	74	12	67	41	20	18	20	1.90
761724--761778	22	2.5	22	87	0	83	43	23	16	16	1.87
763040--763117	35	2.2	36	82	13	108	46	3	7	42	1.51
763043--763116	33	2.2	34	81	13	84	45	4	8	41	1.52
765155--765222	27	2.6	27	95	4	122	30	11	16	41	1.84
768090--768146	25	2.2	27	75	18	66	42	14	12	31	1.82
768103--768161	25	2.3	26	91	5	102	47	10	10	32	1.71
768943--769037	27	3.6	27	95	2	167	31	11	15	41	1.83
772728--772795	27	2.6	27	93	4	113	29	11	16	42	1.83
775970--776013	15	2.8	16	83	12	56	43	0	13	43	1.44
784127--784157	4	8.0	4	92	7	55	0	25	0	74	0.82
784127--784157	11	2.7	12	95	5	55	0	25	0	74	0.82
784502--784566	26	2.5	26	78	14	71	36	1	4	56	1.29
793353--793394	19	2.3	18	91	4	66	45	7	21	26	1.77
795612--795722	36	3.1	36	91	5	172	31	4	19	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
800206--800315	35	3.2	36	85	11	149	31	4	20	43	1.71
800199--800313	36	3.3	35	83	12	139	32	5	19	43	1.73
801366--801412	25	1.9	25	91	4	78	51	2	19	27	1.58
809707--809757	19	2.6	20	90	3	77	43	23	17	15	1.88
809707--809946	20	11.9	20	78	7	108	38	19	21	20	1.93
809832--809948	20	5.8	20	92	0	189	34	16	24	24	1.95
810021--810058	6	6.5	6	96	3	69	31	52	15	0	1.43
810749--810803	6	9.5	6	98	2	96	0	16	52	30	1.44
810866--810983	20	5.8	20	78	5	119	22	25	17	34	1.96
810865--811004	43	3.3	43	83	6	196	22	25	17	35	1.96
810865--811108	20	11.9	20	71	9	107	19	22	19	38	1.93
811058--811108	19	2.6	20	87	3	68	17	17	21	43	1.88
820949--821017	33	2.1	32	84	7	86	50	1	0	47	1.09
820926--820992	23	2.9	23	70	12	57	50	1	0	47	1.10
824275--824327	15	3.7	16	69	25	55	37	9	18	33	1.83
824262--824350	27	3.3	27	95	3	153	35	10	20	33	1.86
826653--826765	60	1.9	58	85	7	156	35	12	15	37	1.85
834513--834593	28	2.9	28	96	0	144	39	25	17	17	1.91
836005--836036	8	4.0	8	95	0	55	40	0	59	0	0.97
836343--836383	21	1.9	21	85	5	55	51	2	0	46	1.14
841930--842008	25	3.2	25	92	0	122	37	0	34	27	1.57
842566--842621	17	3.4	17	71	14	62	55	1	0	42	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
842576--842629	16	3.3	16	71	5	54	55	1	0	42	1.10
842568--842632	33	2.0	33	96	0	121	55	1	0	43	1.09
842571--842632	19	3.5	19	66	20	53	56	1	0	41	1.09
851117--851181	33	2.0	33	85	8	89	33	20	24	21	1.97
851403--851467	33	2.0	33	85	8	89	33	20	24	21	1.97
851097--851669	286	2.0	286	98	0	1121	34	18	18	28	1.95
865252--865349	43	2.3	43	82	8	126	37	9	23	29	1.86
865940--865982	19	2.3	19	84	8	52	41	4	9	44	1.57
866065--866161	23	4.3	23	90	2	135	24	19	25	29	1.98
867334--867447	60	1.9	60	85	5	160	37	14	14	33	1.87
867332--867466	60	2.3	59	80	6	139	36	16	14	32	1.89
868907--868940	17	1.9	18	88	5	52	23	0	11	64	1.26
895195--895233	14	2.8	13	85	11	51	41	25	7	25	1.82
910930--911039	53	2.1	53	82	3	132	44	13	17	24	1.85
912930--912985	13	3.9	14	76	19	53	3	30	0	66	1.09
915414--915444	2	15.5	2	100	0	62	0	48	0	51	1.00
920967--921008	2	21.0	2	100	0	84	50	0	0	50	1.00
924496--924521	9	2.9	9	100	0	52	0	0	19	80	0.71
926912--926940	3	9.7	3	100	0	58	34	0	0	65	0.93
927597--927684	41	2.1	41	93	0	158	15	17	39	27	1.90
927681--927717	15	2.5	15	90	0	56	8	67	16	8	1.40
932061--932103	22	2.0	22	86	9	61	51	4	0	44	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
936475--936505	15	2.1	15	93	0	53	41	0	58	0	0.98
939356--939438	29	2.8	29	90	1	130	42	10	14	32	1.80
942937--942973	15	2.5	15	95	0	65	21	10	40	27	1.86
944118--944200	29	2.8	29	88	1	121	40	12	14	32	1.83
944934--945083	73	2.1	73	96	0	273	22	19	32	26	1.97
945270--945312	22	2.0	22	90	0	68	44	11	6	37	1.68
952286--952322	12	3.1	12	88	0	56	10	32	0	56	1.34
952858--953014	64	2.4	65	82	4	167	33	19	18	28	1.96
953671--953795	31	4.0	31	96	2	225	18	19	24	38	1.93
955603--955636	15	2.3	15	100	0	68	41	0	0	58	0.98

Tables:   1   2   3   4

The End!