Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008016.1 Hibiscus syriacus cultivar Beakdansim tig00110482_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5469637
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 20 of 25
Found at i:4368145 original size:2 final size:2
Alignment explanation
Indices: 4368138--4368168 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
4368128 AGTAAATAAA
4368138 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4368169 ATAGTAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4368279 original size:24 final size:24
Alignment explanation
Indices: 4368234--4368311 Score: 72
Period size: 23 Copynumber: 3.2 Consensus size: 24
4368224 AACAAAAATG
4368234 AAAAATAAA-TAAAGA-AATAGAAT
1 AAAAATAAAGTAAAGATAA-AGAAT
4368257 AAAAATAAAGTAAAGATAAAGAAAAT
1 AAAAATAAAGTAAAGATAAAG--AAT
* * * *
4368283 AAAAA-AATGAAAAAATAAAAAAT
1 AAAAATAAAGTAAAGATAAAGAAT
4368306 AAAAAT
1 AAAAAT
4368312 GAGAAAAAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
23 17 0.37
24 8 0.17
25 13 0.28
26 8 0.17
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (24 bp):
AAAAATAAAGTAAAGATAAAGAAT
Found at i:4368295 original size:9 final size:8
Alignment explanation
Indices: 4368257--4368310 Score: 56
Period size: 8 Copynumber: 6.4 Consensus size: 8
4368247 GAAATAGAAT
4368257 AAAAATAA
1 AAAAATAA
4368265 AGTAAAGATAA
1 A--AAA-ATAA
4368276 AGAAAATAA
1 A-AAAATAA
*
4368285 AAAAATGA
1 AAAAATAA
4368293 AAAAAT-A
1 AAAAATAA
4368300 AAAAATAA
1 AAAAATAA
4368308 AAA
1 AAA
4368311 TGAGAAAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
7 7 0.17
8 17 0.43
9 5 0.12
10 6 0.15
11 5 0.12
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.13
Consensus pattern (8 bp):
AAAAATAA
Found at i:4368308 original size:23 final size:23
Alignment explanation
Indices: 4368254--4368324 Score: 72
Period size: 23 Copynumber: 3.0 Consensus size: 23
4368244 AAAGAAATAG
* *
4368254 AATAAAAATAAAGTAAAGATAAAGAA
1 AATAAAAAT-AAGAAAAAAT-AA-AA
4368280 AATAAAAA-AATGAAAAAATAAAA
1 AATAAAAATAA-GAAAAAATAAAA
*
4368303 AATAAAAATGAGAAAAAATAAA
1 AATAAAAATAAGAAAAAATAAA
4368325 GTGAAGAATA
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
23 21 0.52
24 5 0.12
25 6 0.15
26 8 0.20
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.14
Consensus pattern (23 bp):
AATAAAAATAAGAAAAAATAAAA
Found at i:4368407 original size:15 final size:15
Alignment explanation
Indices: 4368354--4368399 Score: 65
Period size: 15 Copynumber: 3.0 Consensus size: 15
4368344 ATATATACAT
*
4368354 GAAACAAAAACGAAAA
1 GAAA-AAAAATGAAAA
*
4368370 GAAAAAAAATGAAAG
1 GAAAAAAAATGAAAA
4368385 GAAAAAAAATGAAAA
1 GAAAAAAAATGAAAA
4368400 TATAAAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 23 0.85
16 4 0.15
ACGTcount: A:0.76, C:0.04, G:0.15, T:0.04
Consensus pattern (15 bp):
GAAAAAAAATGAAAA
Found at i:4369971 original size:37 final size:38
Alignment explanation
Indices: 4369883--4369990 Score: 157
Period size: 40 Copynumber: 2.8 Consensus size: 38
4369873 CAAAGGTTTG
4369883 GTGTTTCAAGAGAAACAATTTCAAAGGTTTTCTTTTTTTT
1 GTGTTTCAAGAGAAACAATTTCAAAGGTTTTC--TTTTTT
*
4369923 TTGTTTCAAGAGAAACAATTTCAAAGGTTTTC-TTTTT
1 GTGTTTCAAGAGAAACAATTTCAAAGGTTTTCTTTTTT
*
4369960 GTG-TTCTAAGAGAAACGATTTCAAAGGTTTT
1 GTGTTTC-AAGAGAAACAATTTCAAAGGTTTT
4369991 TTTCAAGAGA
Statistics
Matches: 64, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
36 3 0.05
37 30 0.47
40 31 0.48
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.44
Consensus pattern (38 bp):
GTGTTTCAAGAGAAACAATTTCAAAGGTTTTCTTTTTT
Found at i:4370036 original size:65 final size:66
Alignment explanation
Indices: 4369956--4370190 Score: 190
Period size: 67 Copynumber: 3.4 Consensus size: 66
4369946 AAGGTTTTCT
* * * *
4369956 TTTTGTGTTCTAAGAGAAACGAT-TTCAAAGGTT-TTTTTCAAGAGAAACTGTCTCCAGGGAGGC
1 TTTTGT-TTC-AAGAGAAAC-ATATTCAAAGGTTGTGTTTCAAGAGAAACTGTCTCAAGAGAGAC
4370019 AAAA
63 AAAA
*
4370023 TTTTGTTTCAAGAGAAACATATTCAAAGGTTGGTGTTTCAAGGGAAACTGTCTCAAGAGAGACAA
1 TTTTGTTTCAAGAGAAACATATTCAAAGGTT-GTGTTTCAAGAGAAACTGTCTCAAGAGAGACAA
4370088 AA
65 AA
* * * * * * *
4370090 CTTTGTTTCAAAAAGAGAC-TGTCTCAAGGGAGATGAAATTAGTTTCAAGGGAAACTGTCTCAAG
1 TTTTGTTTC-AAGAGAAACATAT-TCAA-AG-GTTG----T-GTTTCAAGAGAAACTGTCTCAAG
4370154 AGAGACAAAA
57 AGAGACAAAA
* * *
4370164 -TTGGTTTCAAGAGAAATAAATTCAAAG
1 TTTTGTTTCAAGAGAAACATATTCAAAG
4370191 ATTTTTGTTG
Statistics
Matches: 137, Mismatches: 18, Indels: 22
0.77 0.10 0.12
Matches are distributed among these distances:
64 2 0.01
65 19 0.14
66 3 0.02
67 45 0.33
68 11 0.08
69 2 0.01
70 2 0.01
71 1 0.01
72 10 0.07
73 9 0.07
74 33 0.24
ACGTcount: A:0.37, C:0.12, G:0.22, T:0.28
Consensus pattern (66 bp):
TTTTGTTTCAAGAGAAACATATTCAAAGGTTGTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAA
A
Found at i:4370153 original size:36 final size:36
Alignment explanation
Indices: 4370057--4370179 Score: 147
Period size: 36 Copynumber: 3.4 Consensus size: 36
4370047 AAAGGTTGGT
* *
4370057 GTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTTT
1 GTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TTA
* * * **
4370094 GTTTCAAAAAGAGACTGTCTCAAGGGAGATGAAATTA
1 GTTTC-AAGAGAAACTGTCTCAAGAGAGACAAAATTA
* *
4370131 GTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTG
1 GTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTA
4370167 GTTTCAAGAGAAA
1 GTTTCAAGAGAAA
4370180 TAAATTCAAA
Statistics
Matches: 70, Mismatches: 15, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
36 36 0.51
37 12 0.17
38 22 0.31
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.24
Consensus pattern (36 bp):
GTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTA
Found at i:4370400 original size:84 final size:82
Alignment explanation
Indices: 4370205--4370444 Score: 232
Period size: 84 Copynumber: 2.9 Consensus size: 82
4370195 TTGTTGACAT
* * * * * * * * *
4370205 ATAACTCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGGAGCTGAGTGTAATCGAACA
1 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACT
* *
4370270 CGG-GGGC-CTTTGGCAG
65 CGGAGGTCTTTTTGGCAG
* * *
4370286 ATAGCCCTTCTCGACTTAAGCTATGTTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTC
1 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTC
*
4370351 GGAGGTCTTTGGTTGGTAG
66 GGAGGTCTTT--TTGGCAG
* ** * * * *
4370370 ATAACCTTTCTCTTCTTAAGTTATGCTGCAAATGATATACCTTAGAGCTTAGCGTAGTCGAACTC
1 ATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTC
*
4370435 GAAGGTCTTT
66 GGAGGTCTTT
4370445 ATTGACAAAT
Statistics
Matches: 129, Mismatches: 26, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
80 24 0.19
81 34 0.26
82 1 0.01
84 70 0.54
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (82 bp):
ATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTC
GGAGGTCTTTTTGGCAG
Found at i:4370795 original size:106 final size:107
Alignment explanation
Indices: 4370610--4370852 Score: 373
Period size: 106 Copynumber: 2.3 Consensus size: 107
4370600 AGCATTGTTC
* * *
4370610 CGAGTACAATATCCTCCGTCGTGAAGTTGAAATTGGCTCTGGAACCGGGAAATTGTTTGTTGACA
1 CGAGTCCAATATCCTTCGTCGTGAAGTTGAAATTGGCTCTGAAACCGGGAAATTGTTTGTTGACA
* *
4370675 ACCAGCGGTCCCTTCG-TTGTGAAGTTGAACTTGTGTTGTCT
66 ACCAGCCGTCCCTTCGTTTGTGAAGTTGAACTTGTGCTGTCT
* ** *
4370716 CGAGTCCAATATCTTTCG-CTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGAC
1 CGAGTCCAATATCCTTCGTC-GTGAAGTTGAAATTGGCTCTGAAACCGGGAAATTGTTTGTTGAC
4370780 AACCAGCCGTCCCTTCGTTTGTGAAGTTGAACTTGTGCTGTCT
65 AACCAGCCGTCCCTTCGTTTGTGAAGTTGAACTTGTGCTGTCT
*
4370823 CGAGTCTAATATCCTTCGTCGTGAAGTTGA
1 CGAGTCCAATATCCTTCGTCGTGAAGTTGA
4370853 GCTTGTGTTG
Statistics
Matches: 123, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
105 1 0.01
106 71 0.58
107 50 0.41
108 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.34
Consensus pattern (107 bp):
CGAGTCCAATATCCTTCGTCGTGAAGTTGAAATTGGCTCTGAAACCGGGAAATTGTTTGTTGACA
ACCAGCCGTCCCTTCGTTTGTGAAGTTGAACTTGTGCTGTCT
Found at i:4370858 original size:43 final size:44
Alignment explanation
Indices: 4370791--4370883 Score: 116
Period size: 43 Copynumber: 2.1 Consensus size: 44
4370781 ACCAGCCGTC
* * *
4370791 CCTTCGTTTGTGAAGTTGAACTTGTGCTGTCTCGAGTCTAATAT
1 CCTTCGTTCGTGAAGTTGAACTTGTGCTGTCTCGAGTCCAAGAT
* * * *
4370835 CCTTCG-TCGTGAAGTTGAGCTTGTGTTGTCTTGGGTCCAAGAT
1 CCTTCGTTCGTGAAGTTGAACTTGTGCTGTCTCGAGTCCAAGAT
4370878 CCTTCG
1 CCTTCG
4370884 CTGAGAAGTC
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
43 36 0.86
44 6 0.14
ACGTcount: A:0.15, C:0.20, G:0.26, T:0.39
Consensus pattern (44 bp):
CCTTCGTTCGTGAAGTTGAACTTGTGCTGTCTCGAGTCCAAGAT
Found at i:4370992 original size:256 final size:255
Alignment explanation
Indices: 4370632--4371107 Score: 747
Period size: 256 Copynumber: 1.9 Consensus size: 255
4370622 CCTCCGTCGT
* * * * *
4370632 GAAGTTGAAATTGGCTCTGGAACCGGGAAATTGTTTGTTGACAACCAGCGGTCCCTTCGTTGTGA
1 GAAGTCGAAATCGGCTCTGAAACCGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGA
* *
4370697 AGTTGAACTTGTGTTGTCTCGAGTCCAATATCTTTCGCTGTGAAGTTGAAATTGGCTCTGAAATT
66 AGTTGAACTTGCGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATT
* * * *
4370762 GGGAAGTTGTTTGTTGACAACCAGCCGTCCCTTCGTTTGTGAAGTTGAACTTGTGCTGTCTCGAG
131 GGGAAATTGTTTATTGACAACCAGCCGTCCCTTCG-TCGTGAAGTTGAACTTGCGCTGTCTCGAG
*
4370827 TCTAATATCCTTCG-TCGTGAAGTTGAGCTTGTGTTGTCTTGGGTCCAAGATCCTTCGCTGA
195 TCCAATATCCTTCGCT-GTGAAGTTGAGCTTGTGTTGTCTTGGGTCCAAGATCCTTCGCTGA
** *
4370888 GAAGTCGAAATCGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGA
1 GAAGTCGAAATCGGCTCTGAAACCGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGA
* *
4370953 AGTTGAACTTGCGTTGTCTGGAGTTCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATT
66 AGTTGAACTTGCGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATT
* * *
4371018 GGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
131 GGGAAATTGTTTATTGACAACCAGCCGTCCCTTCGTCGTGAAGTTGAACTTGCGCTGTCTCGAGT
4371083 CCAATATCCTTCGCTGTGAAGTTGA
196 CCAATATCCTTCGCTGTGAAGTTGA
4371108 AATTGGCTCT
Statistics
Matches: 199, Mismatches: 20, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
255 48 0.24
256 151 0.76
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.34
Consensus pattern (255 bp):
GAAGTCGAAATCGGCTCTGAAACCGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGA
AGTTGAACTTGCGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATT
GGGAAATTGTTTATTGACAACCAGCCGTCCCTTCGTCGTGAAGTTGAACTTGCGCTGTCTCGAGT
CCAATATCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTTGGGTCCAAGATCCTTCGCTGA
Found at i:4371020 original size:106 final size:106
Alignment explanation
Indices: 4370835--4372278 Score: 2263
Period size: 106 Copynumber: 13.8 Consensus size: 106
4370825 AGTCTAATAT
* * * * *
4370835 CCTTCGTCGTGAAGTTGAGCTTGTGTTGTCTTGG-GTCCAAGATCCTTCGCTGAGAAGTCGAAAT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTC-TGGAGTCCAATATCCTTCGCTGTGAAGTTGAAAT
* *
4370899 CGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTC
65 TGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTC
*
4370941 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTTCAATATCCTTCGCTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
* *
4371006 GGCTCTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTC
66 GGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTC
4371047 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
* *
4371112 GGCTCTGAAATTGGGAAATTGTTTTTTTTGACAACCAGCGGTC
66 GGCTCTGAAATTGGGAAGTTG--TTTGTTGACAACCAGCGGTC
* * *
4371155 CCTTCGTCATGAAGTTGAACTTGCGTTGTCTTGAGTCCAATATCCTTCGTTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
* * **
4371220 GGCTCTGAAATTGAGAAATCATTTGTTGACAACCAGCGGTC
66 GGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTC
4371261 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
* * * *
4371326 GGCTCCGAAATTGGGAAGTTGTTTTTTTTTACAAGCAGCGGTC
66 GGCTCTGAAATTGGGAAGTTG--TTTGTTGACAACCAGCGGTC
*
4371369 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTTGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
* *
4371434 GGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCAGTC
66 GGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTC
4371475 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
*
4371540 GGCTCTGAAATTGGGAAGTTGTTTGTTGACACCCAGCGGTC
66 GGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTC
* * *
4371581 CCTTCGTCGTGAAGTTGAACTTGCGTTGCCTGGAGTCCAATGTCCTTCGTTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
* *
4371646 GGCTCTGAAATTGAGAAGTTGTTTGTTGACAAACAGCGGTC
66 GGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTC
*
4371687 CCTTCGTCGTGAAGTTGAACTTACGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
4371752 GGCTCTG-AA-----AAGTTGTTTGTTGACAACCAGCGGTC
66 GGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTC
* *
4371787 CCTTCGTCGTGAAGTTGAACTTGCGTTGCCTGGAGTCCAATGTCCTTCG-T-T---G-TG-AA--
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
*
4371843 -G-T-TGAAATTGGGAAATTGTTTGTTGACAACCAGCGGTC
66 GGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTC
4371881 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
4371946 GGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTC
66 GGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTC
* *
4371987 CCTTCGTCGTGAAGTTGAACTTACGTTGTCTGGAGTTCAATATCCTTCGCTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
4372052 GGCTCTG-AA-----AAGTTGTTTGTTGACAACCAGCGGTC
66 GGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTC
*
4372087 CCTTCGTCGTGAAGTTGAACTTACGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
4372152 GGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTC
66 GGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTC
* * * * *
4372193 CCTTCGTCGGGAAGTTGAACTTGCGTTGCCTGGAGTCCAATGTTCTTCGTTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
*
4372258 GGCTCTGAAATTGAGAAGTTG
66 GGCTCTGAAATTGGGAAGTTG
4372279 AAATTTACTC
Statistics
Matches: 1242, Mismatches: 67, Indels: 58
0.91 0.05 0.04
Matches are distributed among these distances:
88 2 0.00
89 3 0.00
90 1 0.00
93 2 0.00
94 74 0.06
95 2 0.00
96 1 0.00
98 1 0.00
99 2 0.00
100 170 0.14
101 4 0.00
104 1 0.00
105 8 0.01
106 772 0.62
108 199 0.16
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.34
Consensus pattern (106 bp):
CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
GGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTC
Found at i:4371202 original size:214 final size:212
Alignment explanation
Indices: 4370835--4372274 Score: 2282
Period size: 214 Copynumber: 6.9 Consensus size: 212
4370825 AGTCTAATAT
* * * * *
4370835 CCTTCGTCGTGAAGTTGAGCTTGTGTTGTCTTGG-GTCCAAGATCCTTCGCTGAGAAGTCGAAAT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTC-TGGAGTCCAATATCCTTCGCTGTGAAGTTGAAAT
* *
4370899 CGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTG
65 TGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTG
* *
4370964 CGTTGTCTGGAGTTCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTT
130 CGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATTGTT
*
4371029 TATTGACAACCAGCGGTC
195 TGTTGACAACCAGCGGTC
4371047 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
* * *
4371112 GGCTCTGAAATTGGGAAATTGTTTTTTTTGACAACCAGCGGTCCCTTCGTCATGAAGTTGAACTT
66 GGCTCTGAAATTGGGAAGTTG--TTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTT
* * **
4371177 GCGTTGTCTTGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATCAT
129 GCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATTGT
4371242 TTGTTGACAACCAGCGGTC
194 TTGTTGACAACCAGCGGTC
4371261 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
* * * *
4371326 GGCTCCGAAATTGGGAAGTTGTTTTTTTTTACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAACTT
66 GGCTCTGAAATTGGGAAGTTG--TTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTT
* *
4371391 GCGTTGTCTTGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGT
129 GCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATTGT
*
4371456 TTGTTGACAACCAGCAGTC
194 TTGTTGACAACCAGCGGTC
4371475 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
*
4371540 GGCTCTGAAATTGGGAAGTTGTTTGTTGACACCCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGC
66 GGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGC
* * * *
4371605 GTTGCCTGGAGTCCAATGTCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTT
131 GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATTGTTT
*
4371670 GTTGACAAACAGCGGTC
196 GTTGACAACCAGCGGTC
*
4371687 CCTTCGTCGTGAAGTTGAACTTACGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
4371752 GGCTCTG-AA-----AAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGC
66 GGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGC
* * *
4371811 GTTGCCTGGAGTCCAATGTCCTTCG-T-T---G-TG-AA---G-T-TGAAATTGGGAAATTGTTT
131 GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATTGTTT
4371864 GTTGACAACCAGCGGTC
196 GTTGACAACCAGCGGTC
4371881 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
*
4371946 GGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTAC
66 GGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGC
*
4372011 GTTGTCTGGAGTTCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAA---AG---TTGTTT
131 GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATTGTTT
4372070 GTTGACAACCAGCGGTC
196 GTTGACAACCAGCGGTC
*
4372087 CCTTCGTCGTGAAGTTGAACTTACGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
*
4372152 GGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGGGAAGTTGAACTTGC
66 GGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGC
* * * *
4372217 GTTGCCTGGAGTCCAATGTTCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAA
131 GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAA
4372275 GTTGAAATTT
Statistics
Matches: 1146, Mismatches: 56, Indels: 53
0.91 0.04 0.04
Matches are distributed among these distances:
194 104 0.09
195 3 0.00
196 1 0.00
199 2 0.00
200 73 0.06
201 2 0.00
202 1 0.00
204 1 0.00
205 2 0.00
206 272 0.24
207 2 0.00
209 3 0.00
210 1 0.00
211 6 0.01
212 267 0.23
214 406 0.35
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (212 bp):
CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
GGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGC
GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATTGTTT
GTTGACAACCAGCGGTC
Found at i:4371266 original size:320 final size:312
Alignment explanation
Indices: 4370835--4372278 Score: 2248
Period size: 320 Copynumber: 4.6 Consensus size: 312
4370825 AGTCTAATAT
* * * * *
4370835 CCTTCGTCGTGAAGTTGAGCTTGTGTTGTCTTGG-GTCCAAGATCCTTCGCTGAGAAGTCGAAAT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTC-TGGAGTCCAATATCCTTCGCTGTGAAGTTGAAAT
* *
4370899 CGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTG
65 TGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTG
* *
4370964 CGTTGTCTGGAGTTCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTT
130 CGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTT
* *
4371029 TATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTT
195 TGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTACGTTGTCTGGAGTCCAATATCCTT
* *
4371094 CGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTTTTTTGACAACCAGCGGTC
260 CGCTGTGAAGTTGAAATTGGCTCTG-AA-----AAGTTG--TTTGTTGACAACCAGCGGTC
* * *
4371155 CCTTCGTCATGAAGTTGAACTTGCGTTGTCTTGAGTCCAATATCCTTCGTTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
* * **
4371220 GGCTCTGAAATTGAGAAATCATTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGC
66 GGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGC
*
4371285 GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAGTTGTTT
131 GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTG--T
* * * * *
4371350 TTTTTTACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTTGAGTCCAATATCCT
194 TTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTACGTTGTCTGGAGTCCAATATCCT
*
4371415 TCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCAGTC
259 TCGCTGTGAAGTTGAAATTGGCTCTG--A---A-AAGTTGTTTGTTGACAACCAGCGGTC
4371475 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
*
4371540 GGCTCTGAAATTGGGAAGTTGTTTGTTGACACCCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGC
66 GGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGC
* * * *
4371605 GTTGCCTGGAGTCCAATGTCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTT
131 GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTT
*
4371670 GTTGACAAACAGCGGTCCCTTCGTCGTGAAGTTGAACTTACGTTGTCTGGAGTCCAATATCCTTC
196 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTACGTTGTCTGGAGTCCAATATCCTTC
4371735 GCTGTGAAGTTGAAATTGGCTCTGAAAAGTTGTTTGTTGACAACCAGCGGTC
261 GCTGTGAAGTTGAAATTGGCTCTGAAAAGTTGTTTGTTGACAACCAGCGGTC
* *
4371787 CCTTCGTCGTGAAGTTGAACTTGCGTTGCCTGGAGTCCAATGTCCTTCG-T-T---G-TG-AA--
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
*
4371843 -G-T-TGAAATTGGGAAATTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGC
66 GGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGC
4371905 GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTT
131 GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTT
*
4371970 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTACGTTGTCTGGAGTTCAATATCCTTC
196 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTACGTTGTCTGGAGTCCAATATCCTTC
4372035 GCTGTGAAGTTGAAATTGGCTCTGAAAAGTTGTTTGTTGACAACCAGCGGTC
261 GCTGTGAAGTTGAAATTGGCTCTGAAAAGTTGTTTGTTGACAACCAGCGGTC
*
4372087 CCTTCGTCGTGAAGTTGAACTTACGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
*
4372152 GGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGGGAAGTTGAACTTGC
66 GGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGC
* * * * *
4372217 GTTGCCTGGAGTCCAATGTTCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTG
131 GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTG
4372279 AAATTTACTC
Statistics
Matches: 1042, Mismatches: 63, Indels: 46
0.91 0.05 0.04
Matches are distributed among these distances:
300 280 0.27
301 2 0.00
302 2 0.00
305 3 0.00
306 4 0.00
307 3 0.00
310 2 0.00
311 2 0.00
312 187 0.18
313 1 0.00
316 1 0.00
318 87 0.08
319 2 0.00
320 369 0.35
322 94 0.09
323 2 0.00
326 1 0.00
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.34
Consensus pattern (312 bp):
CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
GGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGC
GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTT
GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTACGTTGTCTGGAGTCCAATATCCTTC
GCTGTGAAGTTGAAATTGGCTCTGAAAAGTTGTTTGTTGACAACCAGCGGTC
Found at i:4371848 original size:43 final size:43
Alignment explanation
Indices: 4371787--4371942 Score: 134
Period size: 43 Copynumber: 3.4 Consensus size: 43
4371777 ACCAGCGGTC
*
4371787 CCTTCGTCGTGAAGTTGAACTTGCGTTGCCTGGAGTCCAATGT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATGT
* * * * ** **
4371830 CCTTCGTTGTGAAGTTGAAATTGGGAAATTGTTTGTTGACAACCAGCGGT
1 CCTTCGTCGTGAAGTTGAACTTGCG---TTGTCTG--GA-GTCCA-ATGT
*
4371880 CCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
1 -CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATGT
4371924 CCTTCG-CTGTGAAGTTGAA
1 CCTTCGTC-GTGAAGTTGAA
4371943 ATTGGCTCTG
Statistics
Matches: 86, Mismatches: 18, Indels: 18
0.70 0.15 0.15
Matches are distributed among these distances:
42 1 0.01
43 39 0.45
44 1 0.01
45 3 0.03
46 7 0.08
48 8 0.09
49 3 0.03
50 2 0.02
51 22 0.26
ACGTcount: A:0.20, C:0.20, G:0.27, T:0.33
Consensus pattern (43 bp):
CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATGT
Found at i:4375502 original size:6 final size:6
Alignment explanation
Indices: 4375491--4375515 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
4375481 ATCGAATAAA
4375491 TAAAAT TAAAAT TAAAAT TAAAAT T
1 TAAAAT TAAAAT TAAAAT TAAAAT T
4375516 TTCTCATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (6 bp):
TAAAAT
Found at i:4376308 original size:2 final size:2
Alignment explanation
Indices: 4376301--4376333 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
4376291 AAAGTAAATA
4376301 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4376334 ATAGTAATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4376422 original size:13 final size:12
Alignment explanation
Indices: 4376401--4376490 Score: 51
Period size: 12 Copynumber: 7.0 Consensus size: 12
4376391 CAAAAATGAA
4376401 AAATAAATAAAG
1 AAATAAATAAAG
*
4376413 AAATAGAATAAAAAT
1 AAATA-AAT--AAAG
4376428 AAAGTAAAGATAAAG
1 AAA-T-AA-ATAAAG
*
4376443 AAAATAAAAAAATG
1 -AAATAAATAAA-G
4376457 AAA-AAATAAA-
1 AAATAAATAAAG
4376467 AAATAAA-AAAG
1 AAATAAATAAAG
*
4376478 AGAAAAAATAAAG
1 A-AATAAATAAAG
4376491 TGAAGAATAA
Statistics
Matches: 61, Mismatches: 5, Indels: 23
0.69 0.06 0.26
Matches are distributed among these distances:
10 6 0.10
11 4 0.07
12 16 0.26
13 14 0.23
14 3 0.05
15 10 0.16
16 5 0.08
17 3 0.05
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (12 bp):
AAATAAATAAAG
Found at i:4376444 original size:24 final size:24
Alignment explanation
Indices: 4376399--4376475 Score: 70
Period size: 23 Copynumber: 3.2 Consensus size: 24
4376389 AACAAAAATG
4376399 AAAAATAAA-TAAAGA-AATAGAAT
1 AAAAATAAAGTAAAGATAA-AGAAT
4376422 AAAAATAAAGTAAAGATAAAGAAAAT
1 AAAAATAAAGTAAAGATAAAG--AAT
* * * *
4376448 AAAAA-AATGAAAAAATAAAAAAT
1 AAAAATAAAGTAAAGATAAAGAAT
4376471 AAAAA
1 AAAAA
4376476 AGAGAAAAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
23 17 0.37
24 8 0.17
25 13 0.28
26 8 0.17
ACGTcount: A:0.78, C:0.00, G:0.08, T:0.14
Consensus pattern (24 bp):
AAAAATAAAGTAAAGATAAAGAAT
Found at i:4376464 original size:16 final size:15
Alignment explanation
Indices: 4376392--4376489 Score: 63
Period size: 17 Copynumber: 6.1 Consensus size: 15
4376382 GTAATAAAAC
*
4376392 AAAAATGAAAAATAA
1 AAAAATAAAAAATAA
* *
4376407 ATAAAGAAATAGAATAA
1 AAAAATAAA-A-AATAA
*
4376424 AAATAA-AGTAAAGATAA
1 AAA-AATA--AAAAATAA
*
4376441 AGAAAATAAAAAAATGA
1 A-AAAAT-AAAAAATAA
4376458 AAAAATAAAAAATAA
1 AAAAATAAAAAATAA
*
4376473 AAAAGAGAAAAAATAA
1 AAAA-ATAAAAAATAA
4376489 A
1 A
4376490 GTGAAGAATA
Statistics
Matches: 65, Mismatches: 9, Indels: 17
0.71 0.10 0.19
Matches are distributed among these distances:
15 18 0.28
16 17 0.26
17 22 0.34
18 5 0.08
19 3 0.05
ACGTcount: A:0.78, C:0.00, G:0.09, T:0.13
Consensus pattern (15 bp):
AAAAATAAAAAATAA
Found at i:4376473 original size:23 final size:23
Alignment explanation
Indices: 4376443--4376489 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 23
4376433 AAAGATAAAG
4376443 AAAATAAAAAA-ATGAAAAAATAA
1 AAAATAAAAAAGA-GAAAAAATAA
4376466 AAAATAAAAAAGAGAAAAAATAA
1 AAAATAAAAAAGAGAAAAAATAA
4376489 A
1 A
4376490 GTGAAGAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 22 0.96
24 1 0.04
ACGTcount: A:0.83, C:0.00, G:0.06, T:0.11
Consensus pattern (23 bp):
AAAATAAAAAAGAGAAAAAATAA
Found at i:4376476 original size:7 final size:8
Alignment explanation
Indices: 4376422--4376489 Score: 59
Period size: 8 Copynumber: 8.1 Consensus size: 8
4376412 GAAATAGAAT
4376422 AAAAATAA
1 AAAAATAA
4376430 AGTAAAGATAA
1 A--AAA-ATAA
4376441 AGAAAATAA
1 A-AAAATAA
*
4376450 AAAAATGA
1 AAAAATAA
4376458 AAAAAT-A
1 AAAAATAA
4376465 AAAAATAA
1 AAAAATAA
*
4376473 AAAAGA-GA
1 AAAA-ATAA
4376481 AAAAATAA
1 AAAAATAA
4376489 A
1 A
4376490 GTGAAGAATA
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
7 8 0.16
8 25 0.50
9 6 0.12
10 6 0.12
11 5 0.10
ACGTcount: A:0.79, C:0.00, G:0.09, T:0.12
Consensus pattern (8 bp):
AAAAATAA
Found at i:4376548 original size:15 final size:15
Alignment explanation
Indices: 4376519--4376563 Score: 56
Period size: 14 Copynumber: 3.0 Consensus size: 15
4376509 ATATATACAT
*
4376519 GAAACAAAAACGAAAA
1 GAAA-AAAAATGAAAA
4376535 GAAAAAAAATG-AAA
1 GAAAAAAAATGAAAA
*
4376549 GGAAAAAAATGAAAA
1 GAAAAAAAATGAAAA
4376564 TATAAAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
14 13 0.50
15 9 0.35
16 4 0.15
ACGTcount: A:0.76, C:0.04, G:0.16, T:0.04
Consensus pattern (15 bp):
GAAAAAAAATGAAAA
Found at i:4384367 original size:77 final size:77
Alignment explanation
Indices: 4384211--4384679 Score: 528
Period size: 77 Copynumber: 6.2 Consensus size: 77
4384201 AAATGTCACA
* * * * *
4384211 GTTCACTAAGAAACAGGTTGAGATATGGAATGTTAATA---TT-TT--TAAAAT-GGATTGTGCC
1 GTTCACTAAGAAATAGGTTGTGATCTGAAATGTTAATATTTTTATTAATAAAATAGG-TTGCGCC
*
4384269 CAAGAATGTCATG
65 CAAGAATATCATG
* * * *
4384282 GTTTACTAAGAAATATGTTGTGATCTGAAATGTTAATATTTTTATTAATAAAATAGGTTGCGTCT
1 GTTCACTAAGAAATAGGTTGTGATCTGAAATGTTAATATTTTTATTAATAAAATAGGTTGCGCCC
4384347 AAGAATATCATG
66 AAGAATATCATG
* *
4384359 ATTCACTAAGAAATAGGTTGCGATCT-ATAATGTTAATATTTTTATTAATAAAATAGGTTGCGCC
1 GTTCACTAAGAAATAGGTTGTGATCTGA-AATGTTAATATTTTTATTAATAAAATAGGTTGCGCC
*
4384423 CAAGAATGTCATG
65 CAAGAATATCATG
* * * *
4384436 ATTCACTAAGAAATAGATTGTGATCTGGAATGTTAATATTTTTATTAATAAAATGGGTTGCGCCC
1 GTTCACTAAGAAATAGGTTGTGATCTGAAATGTTAATATTTTTATTAATAAAATAGGTTGCGCCC
4384501 AAGAATAGT-ATG
66 AAGAATA-TCATG
* * * * * *
4384513 GTTCACTAAGAAATAAGTTGCGATCTGGAATGATAATAATTTTATTAATAAAAT-GAGTTTCGCC
1 GTTCACTAAGAAATAGGTTGTGATCTGAAATGTTAATATTTTTATTAATAAAATAG-GTTGCGCC
*
4384577 CAAGATTGA-CATG
65 CAAGAAT-ATCATG
* * * * * *
4384590 GTTAACTAAGAAATAGGTTGTGATATTAAATGTTAATATTTTTATTAATAAAATATGTTACGCAC
1 GTTCACTAAGAAATAGGTTGTGATCTGAAATGTTAATATTTTTATTAATAAAATAGGTTGCGCCC
* *
4384655 AAGAATGTTATG
66 AAGAATATCATG
4384667 GTTCACTAAGAAA
1 GTTCACTAAGAAA
4384680 GCAAGTTGCG
Statistics
Matches: 338, Mismatches: 45, Indels: 24
0.83 0.11 0.06
Matches are distributed among these distances:
71 32 0.09
74 2 0.01
75 2 0.01
76 2 0.01
77 296 0.88
78 4 0.01
ACGTcount: A:0.37, C:0.09, G:0.18, T:0.35
Consensus pattern (77 bp):
GTTCACTAAGAAATAGGTTGTGATCTGAAATGTTAATATTTTTATTAATAAAATAGGTTGCGCCC
AAGAATATCATG
Found at i:4384373 original size:37 final size:37
Alignment explanation
Indices: 4384332--4384451 Score: 102
Period size: 37 Copynumber: 3.2 Consensus size: 37
4384322 TTTATTAATA
4384332 AAATAGGTTGCGTCTAAGAATATCATGATTCACTAAG
1 AAATAGGTTGCGTCTAAGAATATCATGATTCACTAAG
** * *
4384369 AAATAGGTTGCGATCTATAATGTTAATATTTTTATT-AAT-A-
1 AAATAGGTTGCG-TC--TAA-G--AATATCATGATTCACTAAG
* * *
4384409 AAATAGGTTGCGCCCAAGAATGTCATGATTCACTAAG
1 AAATAGGTTGCGTCTAAGAATATCATGATTCACTAAG
4384446 AAATAG
1 AAATAG
4384452 ATTGTGATCT
Statistics
Matches: 63, Mismatches: 11, Indels: 18
0.68 0.12 0.20
Matches are distributed among these distances:
34 8 0.13
35 2 0.03
36 2 0.03
37 20 0.32
38 2 0.03
39 1 0.02
40 15 0.24
41 2 0.03
42 2 0.03
43 9 0.14
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (37 bp):
AAATAGGTTGCGTCTAAGAATATCATGATTCACTAAG
Found at i:4384417 original size:40 final size:40
Alignment explanation
Indices: 4384292--4384497 Score: 135
Period size: 40 Copynumber: 5.3 Consensus size: 40
4384282 GTTTACTAAG
* *
4384292 AAATATGTTGTGATCT-GAAATGTTAATATTTTTATTAATA
1 AAATAGGTTGCGATCTAG-AATGTTAATATTTTTATTAATA
* * * * *
4384332 AAATAGGTTGCG-TCTAAGAAT-ATCATGA--TTCACTAA-G
1 AAATAGGTTGCGATCT-AGAATGTTAAT-ATTTTTATTAATA
*
4384369 AAATAGGTTGCGATCTATAATGTTAATATTTTTATTAATA
1 AAATAGGTTGCGATCTAGAATGTTAATATTTTTATTAATA
** * * * * *
4384409 AAATAGGTTGCGCCCAAGAATG-TCATGA--TTCACTAA-G
1 AAATAGGTTGCGATCTAGAATGTTAAT-ATTTTTATTAATA
* * *
4384446 AAATAGATTGTGATCTGGAATGTTAATATTTTTATTAATA
1 AAATAGGTTGCGATCTAGAATGTTAATATTTTTATTAATA
*
4384486 AAATGGGTTGCG
1 AAATAGGTTGCG
4384498 CCCAAGAATA
Statistics
Matches: 119, Mismatches: 34, Indels: 26
0.66 0.19 0.15
Matches are distributed among these distances:
37 34 0.29
38 21 0.18
39 21 0.18
40 42 0.35
41 1 0.01
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.38
Consensus pattern (40 bp):
AAATAGGTTGCGATCTAGAATGTTAATATTTTTATTAATA
Found at i:4384600 original size:231 final size:225
Alignment explanation
Indices: 4384212--4384679 Score: 593
Period size: 231 Copynumber: 2.1 Consensus size: 225
4384202 AATGTCACAG
* *
4384212 TTCACTAAGAAACAGGTTGAGATATGGAATGTTAATATTTTTAAAATGGATTGTGCCCAAGAATG
1 TTCACTAAGAAACAGATTGAGATATGGAATGTTAATATTTTTAAAATGGATTGCGCCCAAGAATG
* * * * *
4384277 TCATGGTTTACTAAGAAATATGTTGTGATCTGAAATGTTAATATTTTTATTAATAAAATAGGTTG
66 TCATGGTTCACTAAGAAATAAGTTGCGATCTGAAATGATAATAATTTTATTAATAAAATAGGTTG
* * * *
4384342 CGTCTAAGAATATCATGATTCACTAAGAAATAGGTTGCGAT-CTATAATGTTAATATTTTTATTA
131 CGCCCAAGAATATCATGATTAACTAAGAAATAGGTTGCGATATTA-AATGTTAATATTTTTATTA
* *
4384406 ATAAAATAGGTTGCGCCCAAGAATGTCATGA
195 ATAAAATAGGTTACGCACAAGAATGTCATGA
* * * *
4384437 TTCACTAAGAAATAGATTGTGATCTGGAATGTTAATATTTTTATTAATAAAATGGGTTGCGCCCA
1 TTCACTAAGAAACAGATTGAGATATGGAATGTTAATA---TT-TT--TAAAATGGATTGCGCCCA
*
4384502 AGAATAGT-ATGGTTCACTAAGAAATAAGTTGCGATCTGGAATGATAATAATTTTATTAATAAAA
60 AGAAT-GTCATGGTTCACTAAGAAATAAGTTGCGATCTGAAATGATAATAATTTTATTAATAAAA
* * * *
4384566 T-GAGTTTCGCCCAAGATTGA-CATGGTTAACTAAGAAATAGGTTGTGATATTAAATGTTAATAT
124 TAG-GTTGCGCCCAAGAAT-ATCATGATTAACTAAGAAATAGGTTGCGATATTAAATGTTAATAT
* * *
4384629 TTTTATTAATAAAATATGTTACGCACAAGAATGTTATGG
187 TTTTATTAATAAAATAGGTTACGCACAAGAATGTCATGA
4384668 TTCACTAAGAAA
1 TTCACTAAGAAA
4384680 GCAAGTTGCG
Statistics
Matches: 208, Mismatches: 25, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
225 33 0.16
228 2 0.01
229 2 0.01
230 1 0.00
231 165 0.79
232 5 0.02
ACGTcount: A:0.37, C:0.09, G:0.18, T:0.35
Consensus pattern (225 bp):
TTCACTAAGAAACAGATTGAGATATGGAATGTTAATATTTTTAAAATGGATTGCGCCCAAGAATG
TCATGGTTCACTAAGAAATAAGTTGCGATCTGAAATGATAATAATTTTATTAATAAAATAGGTTG
CGCCCAAGAATATCATGATTAACTAAGAAATAGGTTGCGATATTAAATGTTAATATTTTTATTAA
TAAAATAGGTTACGCACAAGAATGTCATGA
Found at i:4385004 original size:165 final size:166
Alignment explanation
Indices: 4384746--4385049 Score: 434
Period size: 165 Copynumber: 1.8 Consensus size: 166
4384736 ATAATTTTCC
** * * *
4384746 AAAAGTATTGATACTTTACAATTTAAAGAAAAACATGGAAAATGAAAAGGTTGCAAAGTATTAAT
1 AAAAGTATCAATACTTTACAATTTAAAGAAAAACATGGAAAATGAAAAGGATGCAAAATATCAAT
* * **
4384811 ATTTTTTCAAAAATATCGATATTTTTAAATTTGAAAGTTAAAATATCA-TTTCCATGTTTTTTTT
66 AATTTTTCAAAAATATCGATACTTTTAAATTCAAAAGTTAAAATATCATTTTCCATGTTTTTTTT
*
4384875 AATTCGAAAGTATTGATAAAGTATTGATACTCTTTT
131 AAATCGAAAGTATTGATAAAGTATTGATACTCTTTT
* *
4384911 AAAAGTATCAATACTTT-CGAATTTAAAGAAAAACATGGAAAATGAGAAGGCAT-CAAAATATCG
1 AAAAGTATCAATACTTTAC-AATTTAAAGAAAAACATGGAAAATGAAAAGG-ATGCAAAATATCA
* * *
4384974 ATAATTTTTCAACAGTATCGATACTTTTAAATTCAAAAGTTCAAATATCATTTTCCATGTTTTTT
64 ATAATTTTTCAAAAATATCGATACTTTTAAATTCAAAAGTTAAAATATCATTTTCCATGTTTTTT
4385039 TTAAATCGAAA
129 TTAAATCGAAA
4385050 ATAGCTATAC
Statistics
Matches: 121, Mismatches: 15, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
164 1 0.01
165 95 0.79
166 25 0.21
ACGTcount: A:0.42, C:0.10, G:0.11, T:0.37
Consensus pattern (166 bp):
AAAAGTATCAATACTTTACAATTTAAAGAAAAACATGGAAAATGAAAAGGATGCAAAATATCAAT
AATTTTTCAAAAATATCGATACTTTTAAATTCAAAAGTTAAAATATCATTTTCCATGTTTTTTTT
AAATCGAAAGTATTGATAAAGTATTGATACTCTTTT
Found at i:4385149 original size:80 final size:81
Alignment explanation
Indices: 4384977--4385164 Score: 231
Period size: 80 Copynumber: 2.3 Consensus size: 81
4384967 AATATCGATA
* * *
4384977 ATTTTTCAACAGTATCGATACTTTTAAATTCAAAAGTTCAAATATCATTTTCCATGTTTTTTTTA
1 ATTTTTCAAAAGTATCGATACTTTTAAATTCAAAAGCTCAAATATCATTTTCCATGTTTCTTTTA
*
4385042 AATCGAAAATAGCTAT
66 AATCGAAAATAGCAAT
* *
4385058 ACATTTTCAAAAGTATCGATACTTTTAAATTCGAAA-CTC-AATATCATTTTCCATG-TTCTTTT
1 A-TTTTTCAAAAGTATCGATACTTTTAAATTCAAAAGCTCAAATATCATTTTCCATGTTTCTTTT
*
4385120 AAATTCGAAAGTA-CGAAT
65 AAA-TCGAAAATAGC-AAT
*
4385138 ATTTTTCCAAAAGTATTGATACATTTT
1 ATTTTT-CAAAAGTATCGATAC-TTTT
4385165 CACAAATATC
Statistics
Matches: 93, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
79 14 0.15
80 41 0.44
81 7 0.08
82 31 0.33
ACGTcount: A:0.36, C:0.14, G:0.08, T:0.42
Consensus pattern (81 bp):
ATTTTTCAAAAGTATCGATACTTTTAAATTCAAAAGCTCAAATATCATTTTCCATGTTTCTTTTA
AATCGAAAATAGCAAT
Found at i:4385726 original size:38 final size:38
Alignment explanation
Indices: 4385652--4385726 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 38
4385642 GATAGCATGC
* * *
4385652 TACTTTCTTAGTGAAGTATAACATTTTTGGGCGCAACT
1 TACTTTCTTAATGAAATATAACATTTTTGAGCGCAACT
* *
4385690 TACTTTCTTAAT-AAATAATAACATTTTTTAGTGCAAC
1 TACTTTCTTAATGAAAT-ATAACATTTTTGAGCGCAAC
4385727 ATGTTTTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
37 3 0.10
38 28 0.90
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.41
Consensus pattern (38 bp):
TACTTTCTTAATGAAATATAACATTTTTGAGCGCAACT
Found at i:4386968 original size:14 final size:16
Alignment explanation
Indices: 4386936--4386965 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
4386926 TCCAGCGATC
4386936 CTAAAAATATTTAAAA
1 CTAAAAATATTTAAAA
4386952 CTAAAAAT-TTTAAA
1 CTAAAAATATTTAAA
4386966 CTATGTAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (16 bp):
CTAAAAATATTTAAAA
Found at i:4389605 original size:13 final size:13
Alignment explanation
Indices: 4389563--4389608 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
4389553 CTATGACACG
4389563 CATTTATGACGTA
1 CATTTATGACGTA
* *
4389576 CATTTATAACGCA
1 CATTTATGACGTA
*
4389589 CATTTATGACGTG
1 CATTTATGACGTA
4389602 CATTTAT
1 CATTTAT
4389609 AACACTCATT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.39
Consensus pattern (13 bp):
CATTTATGACGTA
Found at i:4389618 original size:26 final size:26
Alignment explanation
Indices: 4389558--4389618 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
4389548 TGAATCTATG
*
4389558 ACACGCATTTATGACGTACATTTATA
1 ACACACATTTATGACGTACATTTATA
* *
4389584 ACGCACATTTATGACGTGCATTTATA
1 ACACACATTTATGACGTACATTTATA
*
4389610 ACACTCATT
1 ACACACATT
4389619 GCGCGTCATT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (26 bp):
ACACACATTTATGACGTACATTTATA
Found at i:4389802 original size:85 final size:85
Alignment explanation
Indices: 4389615--4389812 Score: 290
Period size: 85 Copynumber: 2.3 Consensus size: 85
4389605 TTATAACACT
* *
4389615 CATTGCGCGTCATTGAAACCACCGTCATAAATTAAGATGACACACATTTGTGTGTCATAAATTTA
1 CATTGCGCGTCATTGAAGCCCCCGTCATAAATTAAGATGACACACATTTGTGTGTCATAAATTTA
4389680 TGACACACATGTATGACTTA
66 TGACACACATGTATGACTTA
* * * *
4389700 CATTGAGCGTCATTGAAGCCCCCGTCATAAA-TATGCTTGACTCACATTTGTGTGTCATAAATTT
1 CATTGCGCGTCATTGAAGCCCCCGTCATAAATTAAG-ATGACACACATTTGTGTGTCATAAATTT
*
4389764 ATGACACGCATGTATGACTTA
65 ATGACACACATGTATGACTTA
* * *
4389785 CATTGCGTGTCATTGAAGCACGCGTCAT
1 CATTGCGCGTCATTGAAGCCCCCGTCAT
4389813 TAAAAAAAGA
Statistics
Matches: 101, Mismatches: 11, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
84 3 0.03
85 98 0.97
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (85 bp):
CATTGCGCGTCATTGAAGCCCCCGTCATAAATTAAGATGACACACATTTGTGTGTCATAAATTTA
TGACACACATGTATGACTTA
Found at i:4391096 original size:9 final size:9
Alignment explanation
Indices: 4391068--4391113 Score: 55
Period size: 9 Copynumber: 5.6 Consensus size: 9
4391058 GCATTTCGTT
4391068 AAAATGAAC
1 AAAATGAAC
*
4391077 AAAA-GCA-
1 AAAATGAAC
4391084 AAAATGAAC
1 AAAATGAAC
4391093 AAAAT-AA-
1 AAAATGAAC
4391100 AAAATGAAC
1 AAAATGAAC
4391109 AAAAT
1 AAAAT
4391114 CATTTCATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
7 9 0.29
8 8 0.26
9 14 0.45
ACGTcount: A:0.72, C:0.09, G:0.09, T:0.11
Consensus pattern (9 bp):
AAAATGAAC
Found at i:4391113 original size:16 final size:16
Alignment explanation
Indices: 4391068--4391113 Score: 74
Period size: 16 Copynumber: 2.9 Consensus size: 16
4391058 GCATTTCGTT
**
4391068 AAAATGAACAAAAGCA
1 AAAATGAACAAAATAA
4391084 AAAATGAACAAAATAA
1 AAAATGAACAAAATAA
4391100 AAAATGAACAAAAT
1 AAAATGAACAAAAT
4391114 CATTTCATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.72, C:0.09, G:0.09, T:0.11
Consensus pattern (16 bp):
AAAATGAACAAAATAA
Found at i:4391939 original size:33 final size:32
Alignment explanation
Indices: 4391887--4391948 Score: 97
Period size: 33 Copynumber: 1.9 Consensus size: 32
4391877 TAAAAGTATC
*
4391887 AATTTTACATTTTTAAAAATAAATTAAAAATT
1 AATTTTAAATTTTTAAAAATAAATTAAAAATT
*
4391919 AATTTTAAATGTTTTAAAAATCAATTAAAA
1 AATTTTAAAT-TTTTAAAAATAAATTAAAA
4391949 CTAATAAGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
32 9 0.33
33 18 0.67
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (32 bp):
AATTTTAAATTTTTAAAAATAAATTAAAAATT
Found at i:4398291 original size:12 final size:12
Alignment explanation
Indices: 4398277--4398323 Score: 58
Period size: 12 Copynumber: 3.7 Consensus size: 12
4398267 TGAATTTTTT
4398277 ATTTAATTTGATA
1 ATTTAATTT-ATA
*
4398290 TTTTAATTCATATA
1 ATTTAATT--TATA
4398304 ATTTAATTTATA
1 ATTTAATTTATA
4398316 ATTTAATT
1 ATTTAATT
4398324 CACATTCACA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
12 12 0.40
13 7 0.23
14 10 0.33
15 1 0.03
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (12 bp):
ATTTAATTTATA
Found at i:4400988 original size:22 final size:22
Alignment explanation
Indices: 4400963--4401011 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
4400953 ATATATTTAT
4400963 TAATATTTATAATAATATAATA
1 TAATATTTATAATAATATAATA
* * *
4400985 TAATATTTTTATTATTATAATA
1 TAATATTTATAATAATATAATA
*
4401007 AAATA
1 TAATA
4401012 ATCAATTATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
TAATATTTATAATAATATAATA
Found at i:4401005 original size:30 final size:32
Alignment explanation
Indices: 4400955--4401013 Score: 86
Period size: 30 Copynumber: 1.9 Consensus size: 32
4400945 TATTTAAAAT
*
4400955 ATATTTATTAATATTTATAATAATATAATATA
1 ATATTTATTAATATTTATAATAAAATAATATA
*
4400987 ATATTT-TTATTA-TTATAATAAAATAAT
1 ATATTTATTAATATTTATAATAAAATAAT
4401014 CAATTATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 14 0.56
31 5 0.20
32 6 0.24
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (32 bp):
ATATTTATTAATATTTATAATAAAATAATATA
Found at i:4401042 original size:23 final size:23
Alignment explanation
Indices: 4400979--4401046 Score: 66
Period size: 23 Copynumber: 2.9 Consensus size: 23
4400969 TTATAATAAT
* *
4400979 ATAATATAATATTTTTATTATTATA
1 ATAATATAACA-TATTA-TATTATA
*
4401004 ATAAAATAATCA-ATTATATTATA
1 ATAATATAA-CATATTATATTATA
*
4401027 ATAATATAAGATATTATATT
1 ATAATATAACATATTATATT
4401047 GTTATTTAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
22 1 0.03
23 23 0.64
24 3 0.08
25 8 0.22
26 1 0.03
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (23 bp):
ATAATATAACATATTATATTATA
Found at i:4401146 original size:19 final size:18
Alignment explanation
Indices: 4401122--4401190 Score: 52
Period size: 19 Copynumber: 3.6 Consensus size: 18
4401112 ATATTATTAA
4401122 ATTATTAATAATGAATAAT
1 ATTATTAATAAT-AATAAT
* *
4401141 ATTATTTAT-ATATTTAAT
1 ATTATTAATAATA-ATAAT
4401159 ATTAATATAATAATCTAATAAT
1 ATT-AT-TAATAA--TAATAAT
4401181 ATT-TTAATAA
1 ATTATTAATAA
4401191 AGATATTTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
17 1 0.03
18 9 0.22
19 16 0.40
20 4 0.10
21 1 0.03
22 7 0.17
23 2 0.05
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (18 bp):
ATTATTAATAATAATAAT
Found at i:4401165 original size:27 final size:27
Alignment explanation
Indices: 4401085--4401170 Score: 70
Period size: 27 Copynumber: 3.1 Consensus size: 27
4401075 AATAACATTT
* *
4401085 ATATTATTTAT-TAATTTCATAGAAATA
1 ATATTATTTATAT-ATTTAATATAAATA
* *
4401112 ATATTA-TTAAAT-TATTAATAATGAATA
1 ATATTATTTATATAT-TTAAT-ATAAATA
4401139 ATATTATTTATATATTTAATATTAATATA
1 ATATTATTTATATATTTAATA-TAA-ATA
4401168 ATA
1 ATA
4401171 ATCTAATAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
25 1 0.02
26 7 0.15
27 19 0.41
28 12 0.26
29 7 0.15
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.49
Consensus pattern (27 bp):
ATATTATTTATATATTTAATATAAATA
Found at i:4401211 original size:23 final size:23
Alignment explanation
Indices: 4401185--4401229 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
4401175 AATAATATTT
4401185 TAATAAAGATATTTAAAATATAC
1 TAATAAAGATATTTAAAATATAC
* * *
4401208 TAATTAATATTTTTAAAATATA
1 TAATAAAGATATTTAAAATATA
4401230 ATATAATACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (23 bp):
TAATAAAGATATTTAAAATATAC
Found at i:4401349 original size:22 final size:22
Alignment explanation
Indices: 4401324--4401379 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 22
4401314 ATTAATAAAA
4401324 AATATAAAAATAATATTTTAAT
1 AATATAAAAATAATATTTTAAT
4401346 AATA-AATAAAT--TATTTTAAT
1 AATATAA-AAATAATATTTTAAT
* *
4401366 -ATTTTAAAATAATA
1 AATATAAAAATAATA
4401380 ATATTAAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 9
0.72 0.05 0.23
Matches are distributed among these distances:
19 6 0.21
20 10 0.36
21 4 0.14
22 8 0.29
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
AATATAAAAATAATATTTTAAT
Found at i:4401386 original size:22 final size:23
Alignment explanation
Indices: 4401334--4401407 Score: 71
Period size: 22 Copynumber: 3.1 Consensus size: 23
4401324 AATATAAAAA
4401334 TAATATTTTAATAATAAATAAATTATTT
1 TAATATTTTAA-AATAAAT-AA-TA--T
4401362 TAATATTTTAAAAT-AATAATAT
1 TAATATTTTAAAATAAATAATAT
**
4401384 TAA-ATTTTATGATAAATAATAT
1 TAATATTTTAAAATAAATAATAT
4401406 TA
1 TA
4401408 TTTATTGTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
21 8 0.19
22 14 0.33
24 2 0.05
25 2 0.05
26 3 0.07
27 3 0.07
28 11 0.26
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (23 bp):
TAATATTTTAAAATAAATAATAT
Found at i:4404310 original size:24 final size:24
Alignment explanation
Indices: 4404283--4404401 Score: 143
Period size: 24 Copynumber: 5.0 Consensus size: 24
4404273 AAACATAAAT
*
4404283 CAGGTCAAGTATCATATCA-AACTC
1 CAGGTCAAGTATCAGATCAGAA-TC
* *
4404307 CAGGTCAAGAATCATATCAGAATC
1 CAGGTCAAGTATCAGATCAGAATC
*
4404331 CAAGTCAAGTATCAGATCAGAATC
1 CAGGTCAAGTATCAGATCAGAATC
* *
4404355 TATGTC-AGATATCAGATCAGAATC
1 CAGGTCAAG-TATCAGATCAGAATC
*
4404379 CATGTCAAGTATCAGATCAGAAT
1 CAGGTCAAGTATCAGATCAGAAT
4404402 TCAAATCGAA
Statistics
Matches: 85, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
23 2 0.02
24 79 0.93
25 4 0.05
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.24
Consensus pattern (24 bp):
CAGGTCAAGTATCAGATCAGAATC
Found at i:4404417 original size:48 final size:48
Alignment explanation
Indices: 4404316--4404419 Score: 131
Period size: 48 Copynumber: 2.2 Consensus size: 48
4404306 CCAGGTCAAG
* **
4404316 AATCATATCAGAATCCAAGTCAAGTATCAGATCAGAATCTATGTCAGA
1 AATCAGATCAGAATCCAAGTCAAGTATCAGATCAGAATCTAAATCAGA
* *
4404364 TATCAGATCAGAATCCATGTCAAGTATCAGATCAGAAT-TCAAATC-GAA
1 AATCAGATCAGAATCCAAGTCAAGTATCAGATCAGAATCT-AAATCAG-A
4404412 AATCAGAT
1 AATCAGAT
4404420 AAAATATTCA
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
47 2 0.04
48 46 0.96
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.25
Consensus pattern (48 bp):
AATCAGATCAGAATCCAAGTCAAGTATCAGATCAGAATCTAAATCAGA
Found at i:4406834 original size:13 final size:13
Alignment explanation
Indices: 4406816--4406840 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4406806 GTCAACGGTC
4406816 AACGGGTCGGGTA
1 AACGGGTCGGGTA
4406829 AACGGGTCGGGT
1 AACGGGTCGGGT
4406841 CGGGTCGGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.16, G:0.48, T:0.16
Consensus pattern (13 bp):
AACGGGTCGGGTA
Found at i:4408988 original size:24 final size:24
Alignment explanation
Indices: 4408940--4408988 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
4408930 ATGAATATTT
* *
4408940 TATCTGATTTGAATTCTATTTTGA
1 TATCTGATTTGAAATCTATTCTGA
*
4408964 TATCTGATTTGAAATCTGTTCTGA
1 TATCTGATTTGAAATCTATTCTGA
4408988 T
1 T
4408989 TCCTAACATG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.24, C:0.10, G:0.14, T:0.51
Consensus pattern (24 bp):
TATCTGATTTGAAATCTATTCTGA
Found at i:4413444 original size:43 final size:42
Alignment explanation
Indices: 4413396--4413476 Score: 108
Period size: 43 Copynumber: 1.9 Consensus size: 42
4413386 ATAATCATTA
*
4413396 AAGATTCATAAGAAAAAAATTTCAACAATTTATTTCTTTATTC
1 AAGATTCACAAGAAAAAAATTT-AACAATTTATTTCTTTATTC
* * * *
4413439 AAGATTCCCGAGAAATATATTTAACAATTTATTTCTTT
1 AAGATTCACAAGAAAAAAATTTAACAATTTATTTCTTT
4413477 TTAAAAGATA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
42 16 0.48
43 17 0.52
ACGTcount: A:0.41, C:0.12, G:0.06, T:0.41
Consensus pattern (42 bp):
AAGATTCACAAGAAAAAAATTTAACAATTTATTTCTTTATTC
Found at i:4413575 original size:59 final size:57
Alignment explanation
Indices: 4413506--4413673 Score: 194
Period size: 59 Copynumber: 2.9 Consensus size: 57
4413496 ATGATTCCTA
* * * *
4413506 AAAATAAATTCGACAATTTATTTTCCTTACGAAGTTAGAATTATTCGACGATTCTCAAG
1 AAAATAAATTCAACTATTTATTTTCCTTAC-AAGTTAGAATCATT-GAAGATTCTCAAG
** * *
4413565 AAAATAAATTCAACTATTTATTTTTATTGCAAAGTTAGAATCATTTAAGATTCTCAAG
1 AAAATAAATTCAACTATTTATTTTCCTTAC-AAGTTAGAATCATTGAAGATTCTCAAG
* * *
4413623 GAAATAAATCCAACTATTT-TTTTCCTTACAATGTTAGAATCATTTAAGATT
1 AAAATAAATTCAACTATTTATTTTCCTTACAA-GTTAGAATCATTGAAGATT
4413674 TTAATGATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
56 2 0.02
57 26 0.28
58 28 0.30
59 38 0.40
ACGTcount: A:0.39, C:0.13, G:0.10, T:0.39
Consensus pattern (57 bp):
AAAATAAATTCAACTATTTATTTTCCTTACAAGTTAGAATCATTGAAGATTCTCAAG
Found at i:4414158 original size:14 final size:15
Alignment explanation
Indices: 4414139--4414173 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
4414129 ATGTTATATG
4414139 ATAATAATACCAT-A
1 ATAATAATACCATGA
*
4414153 ATAATAATATCATGA
1 ATAATAATACCATGA
4414168 ATAATA
1 ATAATA
4414174 TGTGCTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.57, C:0.09, G:0.03, T:0.31
Consensus pattern (15 bp):
ATAATAATACCATGA
Found at i:4420912 original size:2 final size:2
Alignment explanation
Indices: 4420905--4420948 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
4420895 TTACCCTCTT
4420905 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4420947 TA
1 TA
4420949 ATTAAAATTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:4421370 original size:24 final size:24
Alignment explanation
Indices: 4421343--4421391 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
4421333 TGATCGTTTA
*
4421343 ATAATCAATATAATAACATATTTG
1 ATAACCAATATAATAACATATTTG
4421367 ATAACCAATATAATAACATATTTG
1 ATAACCAATATAATAACATATTTG
4421391 A
1 A
4421392 CCTTTAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.51, C:0.10, G:0.04, T:0.35
Consensus pattern (24 bp):
ATAACCAATATAATAACATATTTG
Found at i:4422292 original size:26 final size:26
Alignment explanation
Indices: 4422255--4422308 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
4422245 CACTGTATCT
4422255 CAAATGCAGCAAAC-AAGAATTAGGAA
1 CAAATGCAGCAAACAAAGAATTA-GAA
4422281 CAAATG-ATGCAAACAAAGAATTAGAA
1 CAAATGCA-GCAAACAAAGAATTAGAA
4422307 CA
1 CA
4422309 TGGCAGAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
25 1 0.04
26 17 0.65
27 8 0.31
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.13
Consensus pattern (26 bp):
CAAATGCAGCAAACAAAGAATTAGAA
Found at i:4423013 original size:21 final size:20
Alignment explanation
Indices: 4422981--4423021 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
4422971 CTAAGATTTT
*
4422981 GATTGTAAAAGGATAAACAA
1 GATTCTAAAAGGATAAACAA
*
4423001 GATTCTAAGAAGGATGAACAA
1 GATTCTAA-AAGGATAAACAA
4423022 ATTATCTCTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.51, C:0.07, G:0.22, T:0.20
Consensus pattern (20 bp):
GATTCTAAAAGGATAAACAA
Found at i:4431398 original size:17 final size:17
Alignment explanation
Indices: 4431376--4431412 Score: 67
Period size: 16 Copynumber: 2.2 Consensus size: 17
4431366 ATGAAAAGAC
4431376 GGATTTTTTTGCTAGAT
1 GGATTTTTTTGCTAGAT
4431393 GGA-TTTTTTGCTAGAT
1 GGATTTTTTTGCTAGAT
4431409 GGAT
1 GGAT
4431413 AGCACTTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.84
17 3 0.16
ACGTcount: A:0.19, C:0.05, G:0.27, T:0.49
Consensus pattern (17 bp):
GGATTTTTTTGCTAGAT
Found at i:4432941 original size:21 final size:21
Alignment explanation
Indices: 4432915--4432956 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
4432905 CCAAAATGGG
*
4432915 GGGAATCGGTACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
4432936 GGGAATCGATACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
4432957 ATATTCAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (21 bp):
GGGAATCGATACCCCTTCATA
Found at i:4433144 original size:29 final size:31
Alignment explanation
Indices: 4433112--4433171 Score: 97
Period size: 29 Copynumber: 2.0 Consensus size: 31
4433102 AAATTTTGAA
*
4433112 TAAATTCAATT-AAGTCCAAATA-CATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
4433141 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
4433172 CCTTAAATTG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 11 0.39
30 10 0.36
31 7 0.25
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.35
Consensus pattern (31 bp):
TAAATTCAATTCAAGTCCAAAAACCATTTTG
Found at i:4436021 original size:16 final size:17
Alignment explanation
Indices: 4435993--4436025 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
4435983 ATCGTCGACA
4435993 AAATTTCACTATTCACG
1 AAATTTCACTATTCACG
4436010 AAATTT-ACTATTCACG
1 AAATTTCACTATTCACG
4436026 TGAATAGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.36, C:0.21, G:0.06, T:0.36
Consensus pattern (17 bp):
AAATTTCACTATTCACG
Found at i:4448772 original size:14 final size:13
Alignment explanation
Indices: 4448732--4448770 Score: 53
Period size: 14 Copynumber: 3.0 Consensus size: 13
4448722 TATTGAAAGC
4448732 TAAATA-TTAAAA
1 TAAATATTTAAAA
*
4448744 TAATTCATTTAAAA
1 TAAAT-ATTTAAAA
4448758 TAAATATTTAAAA
1 TAAATATTTAAAA
4448771 ATTTAATTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 4 0.17
13 9 0.39
14 10 0.43
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (13 bp):
TAAATATTTAAAA
Found at i:4448890 original size:18 final size:19
Alignment explanation
Indices: 4448867--4448904 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
4448857 ATATATTTTA
4448867 AAAACA-ATAAAATAAATG
1 AAAACATATAAAATAAATG
4448885 AAAACATATAAAATAAATG
1 AAAACATATAAAATAAATG
4448904 A
1 A
4448905 CTAAATTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.71, C:0.05, G:0.05, T:0.18
Consensus pattern (19 bp):
AAAACATATAAAATAAATG
Found at i:4450178 original size:3 final size:3
Alignment explanation
Indices: 4450170--4450257 Score: 86
Period size: 3 Copynumber: 28.7 Consensus size: 3
4450160 GGCCCGTTTG
* * * *
4450170 TAA TAA TAA TTAA TAA TAA TAT TAG TAA TAAA TAA TAA TAT TAG TAA
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA
* * * *
4450217 TTA TAA TTA TAA TAA TAA TAA TTA TAA TAA TAA TTA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
4450258 TTTTAAATGA
Statistics
Matches: 69, Mismatches: 14, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
3 63 0.91
4 6 0.09
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (3 bp):
TAA
Found at i:4450617 original size:116 final size:116
Alignment explanation
Indices: 4450480--4451745 Score: 2174
Period size: 116 Copynumber: 11.0 Consensus size: 116
4450470 TAGAGTCATT
* ** ** *
4450480 CAAAAGGTTGAATAAGCTCTTCTCATTATGAACTTCTTCTTTTTTCTTCAGATGACGAGTTCTTC
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTC
4450545 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTTAAA
66 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTTAAA
4450596 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTC
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTC
4450661 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTTAAA
66 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTTAAA
4450712 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTC
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTC
*
4450777 TCATTATGAACTCTTCCTCGCAATGTTGATCCATCAAATGATGAATTTAAA
66 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTTAAA
4450828 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTC
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTC
4450893 TCATTATGAACTCTTCCTGGCAATGTTGATCCATC-AATGATGAATTTAAA
66 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTTAAA
4450943 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTC
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTC
4451008 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTTAAA
66 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTTAAA
4451059 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTC
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTC
*
4451124 TCATTATGAACTCTTCCTCGCAATGTTGATCCATCAAATGATGAATTTAAA
66 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTTAAA
4451175 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTC
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTC
4451240 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTTAAA
66 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTTAAA
*
4451291 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTC
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTC
4451356 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTTAAA
66 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTTAAA
*
4451407 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTC--A-GATGAGTTCTTC
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTC
* * * * * *
4451469 TCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAAGTGATGAATTTAAA
66 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTTAAA
*
4451520 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTC--A-GATGAGTTCTTC
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTC
* * * * * *
4451582 TCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAAGTGATGAATTTAAA
66 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTTAAA
*
4451633 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTC--A-GATGAGTTCTTC
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTC
*** * * ** *
4451695 TCATTATGAACTCGAACTGGTACTGTTGATCCATTGAATGATGGATTTAAA
66 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTTAAA
4451746 TCTTTGCTAA
Statistics
Matches: 1119, Mismatches: 30, Indels: 5
0.97 0.03 0.00
Matches are distributed among these distances:
113 270 0.24
114 1 0.00
115 115 0.10
116 733 0.66
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.38
Consensus pattern (116 bp):
CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTC
TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTTAAA
Found at i:4451348 original size:463 final size:463
Alignment explanation
Indices: 4450480--4451745 Score: 2172
Period size: 463 Copynumber: 2.7 Consensus size: 463
4450470 TAGAGTCATT
* ** **
4450480 CAAAAGGTTGAATAAGCTCTTCTCATTATGAACTTCTTCTTTTTTCTTCAGATGACGAGTTCTTC
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA-ATGACGAGTTCTTC
4450545 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTTAAACAAAAGGTTGAACA
65 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTTAAACAAAAGGTTGAACA
4450610 AATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTCTCATTATGAACTCT
130 AATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTCTCATTATGAACTCT
4450675 TCCTGGCAATGTTGATCCATCAAATGATGAATTTAAACAAAAGGTTGAACAAATTCTTCTCATTA
195 TCCTGGCAATGTTGATCCATCAAATGATGAATTTAAACAAAAGGTTGAACAAATTCTTCTCATTA
*
4450740 TGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTCTCATTATGAACTCTTCCTCGCAATGTTG
260 TGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTCTCATTATGAACTCTTCCTGGCAATGTTG
4450805 ATCCATCAAATGATGAATTTAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTC
325 ATCCATCAAATGATGAATTTAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTC
4450870 CTTCTTCAAATGACGAGTTCTTCTCATTATGAACTCTTCCTGGCAATGTTGATCCATC-AATGAT
390 CTTCTTCAAATGACGAGTTCTTCTCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGAT
4450934 GAATTTAAA
455 GAATTTAAA
4450943 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTC
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTC-AATGACGAGTTCTTC
4451008 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTTAAACAAAAGGTTGAACA
65 TCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTTAAACAAAAGGTTGAACA
4451073 AATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTCTCATTATGAACTCT
130 AATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTCTCATTATGAACTCT
*
4451138 TCCTCGCAATGTTGATCCATCAAATGATGAATTTAAACAAAAGGTTGAACAAATTCTTCTCATTA
195 TCCTGGCAATGTTGATCCATCAAATGATGAATTTAAACAAAAGGTTGAACAAATTCTTCTCATTA
4451203 TGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTCTCATTATGAACTCTTCCTGGCAATGTTG
260 TGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTCTCATTATGAACTCTTCCTGGCAATGTTG
4451268 ATCCATCAAATGATGAATTTAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTC
325 ATCCATCAAATGATGAATTTAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTC
*
4451333 CTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGAT
390 CTTCTTCAAATGACGAGTTCTTCTCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGAT
4451398 GAATTTAAA
455 GAATTTAAA
*
4451407 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTC-A-GATGAGTTCTTCT
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAATGACGAGTTCTTCT
* * * * * *
4451470 CATTATGAACTTTTTCTGGAAAAGCTGATCCATCAAGTGATGAATTTAAACAAAAGGTTGAACAA
66 CATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTTAAACAAAAGGTTGAACAA
* *
4451535 ATTCTTCTCATTATGAACTTCTTCTTCCTTCTTC--A-GATGAGTTCTTCTCATTATGAACTTTT
131 ATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTCTCATTATGAACTCTT
* * * * *
4451597 TCTGGAAAAGCTGATCCATCAAGTGATGAATTTAAACAAAAGGTTGAACAAATTCTTCTCATTAT
196 CCTGGCAATGTTGATCCATCAAATGATGAATTTAAACAAAAGGTTGAACAAATTCTTCTCATTAT
* *** * *
4451662 GAACTTCTTCTTCCTTCTTC--A-GATGAGTTCTTCTCATTATGAACTCGAACTGGTACTGTTGA
261 GAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTCTCATTATGAACTCTTCCTGGCAATGTTGA
** *
4451724 TCCATTGAATGATGGATTTAAA
326 TCCATCAAATGATGAATTTAAA
4451746 TCTTTGCTAA
Statistics
Matches: 769, Mismatches: 32, Indels: 12
0.95 0.04 0.01
Matches are distributed among these distances:
455 54 0.07
456 1 0.00
458 104 0.14
459 1 0.00
461 105 0.14
462 1 0.00
463 438 0.57
464 65 0.08
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.38
Consensus pattern (463 bp):
CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAATGACGAGTTCTTCT
CATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATGAATTTAAACAAAAGGTTGAACAA
ATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTCTCATTATGAACTCTT
CCTGGCAATGTTGATCCATCAAATGATGAATTTAAACAAAAGGTTGAACAAATTCTTCTCATTAT
GAACTTCTTCTTCCTTCTTCAAATGACGAGTTCTTCTCATTATGAACTCTTCCTGGCAATGTTGA
TCCATCAAATGATGAATTTAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCC
TTCTTCAAATGACGAGTTCTTCTCATTATGAACTCTTCCTGGCAATGTTGATCCATCAAATGATG
AATTTAAA
Found at i:4452170 original size:22 final size:22
Alignment explanation
Indices: 4452145--4452199 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
4452135 CATAAAGTTT
* *
4452145 TCATCTTTGAAAATAGAATCTG
1 TCATCTTTGAAAAGAGAATCTA
*
4452167 TCATCTTTAAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
4452189 TCATCTTTGAA
1 TCATCTTTGAA
4452200 GAGTGTAGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:4452695 original size:54 final size:54
Alignment explanation
Indices: 4452571--4452879 Score: 344
Period size: 54 Copynumber: 5.8 Consensus size: 54
4452561 CACTGGTTCA
* * *
4452571 TAAAACATTTGACAATACATTCAT-CTTTTCCTGTGGTTTCTG-TC-GA-G-ATG
1 TAAAACATTTGACAACACATTCATCCTTTT-CTGTGGCTTCTGCTCAGACGTTTG
* *
4452621 TAAAACACTTGACAACACATTCATCCTTTTCTGTGGCTTCTGCTCAGATGTTTG
1 TAAAACATTTGACAACACATTCATCCTTTTCTGTGGCTTCTGCTCAGACGTTTG
* * * **
4452675 TAAAACATTTGACAACACATTCAT-CATTTCTTGTGGTTTTTGCTCAGACGTTCA
1 TAAAACATTTGACAACACATTCATCCTTTTC-TGTGGCTTCTGCTCAGACGTTTG
* * * *
4452729 TAAAGCGTTTGACAACACATTCATCATTTTCTGTGGCTTCTGCTCAGATGTTTG
1 TAAAACATTTGACAACACATTCATCCTTTTCTGTGGCTTCTGCTCAGACGTTTG
* * **
4452783 TAAAACATTTGACAACACATTCATCC-TTTCTTGTGGTTTTTGCTCAGACGTTCA
1 TAAAACATTTGACAACACATTCATCCTTTTC-TGTGGCTTCTGCTCAGACGTTTG
* * * *
4452837 TAAAGCGTTTGACAACACATTCATCATTTTATGTGGCTTCTGC
1 TAAAACATTTGACAACACATTCATCCTTTTCTGTGGCTTCTGC
4452880 CAAGATTTCT
Statistics
Matches: 216, Mismatches: 34, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
50 33 0.15
51 7 0.03
52 2 0.01
53 10 0.05
54 157 0.73
55 7 0.03
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.39
Consensus pattern (54 bp):
TAAAACATTTGACAACACATTCATCCTTTTCTGTGGCTTCTGCTCAGACGTTTG
Found at i:4452769 original size:108 final size:108
Alignment explanation
Indices: 4452571--4452879 Score: 484
Period size: 108 Copynumber: 2.9 Consensus size: 108
4452561 CACTGGTTCA
* * * * * **
4452571 TAAAACATTTGACAATACATTCATCTTTTCCTGTGGTTTCTG-TCGAGATG-T-A-AAA-CACTT
1 TAAAACATTTGACAACACATTCATCATTTCTTGTGGTTTTTGCTC-AGACGTTCATAAAGCGTTT
*
4452631 GACAACACATTCATCCTTTTCTGTGGCTTCTGCTCAGATGTTTG
65 GACAACACATTCATCATTTTCTGTGGCTTCTGCTCAGATGTTTG
4452675 TAAAACATTTGACAACACATTCATCATTTCTTGTGGTTTTTGCTCAGACGTTCATAAAGCGTTTG
1 TAAAACATTTGACAACACATTCATCATTTCTTGTGGTTTTTGCTCAGACGTTCATAAAGCGTTTG
4452740 ACAACACATTCATCATTTTCTGTGGCTTCTGCTCAGATGTTTG
66 ACAACACATTCATCATTTTCTGTGGCTTCTGCTCAGATGTTTG
*
4452783 TAAAACATTTGACAACACATTCATCCTTTCTTGTGGTTTTTGCTCAGACGTTCATAAAGCGTTTG
1 TAAAACATTTGACAACACATTCATCATTTCTTGTGGTTTTTGCTCAGACGTTCATAAAGCGTTTG
*
4452848 ACAACACATTCATCATTTTATGTGGCTTCTGC
66 ACAACACATTCATCATTTTCTGTGGCTTCTGC
4452880 CAAGATTTCT
Statistics
Matches: 190, Mismatches: 10, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
104 42 0.22
105 3 0.02
106 1 0.01
107 3 0.02
108 141 0.74
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.39
Consensus pattern (108 bp):
TAAAACATTTGACAACACATTCATCATTTCTTGTGGTTTTTGCTCAGACGTTCATAAAGCGTTTG
ACAACACATTCATCATTTTCTGTGGCTTCTGCTCAGATGTTTG
Found at i:4452850 original size:162 final size:158
Alignment explanation
Indices: 4452566--4452865 Score: 415
Period size: 162 Copynumber: 1.9 Consensus size: 158
4452556 ATAATCACTG
* *
4452566 GTTCATAAAACATTTGACAATACATTCATCTTTTCCTGTGGTTTCTGTCGAGATGTAAAACACTT
1 GTTCATAAAACATTTGACAACACATTCATCTTTTCCTGTGGCTTCTGTCGAGATGTAAAACACTT
* **
4452631 GACAACACATTCATCCTTTTCTGTGGCTTCTGCTCAGATGTTTGTAAAACATTTGACAACACATT
66 GACAACACATTCATCCTTTTCTGTGGCTTCTGCTCAGACGTTCATAAAACATTTGACAACACATT
4452696 CATCATTTCTTGTGGTTTTTGCTCAGAC
131 CATCATTTCTTGTGGTTTTTGCTCAGAC
* * *
4452724 GTTCATAAAGCGTTTGACAACACATTCATCATTTT-CTGTGGCTTCTGCTCAGATGTTTGTAAAA
1 GTTCATAAAACATTTGACAACACATTCATC-TTTTCCTGTGGCTTCTG-TC-GA-G-ATGTAAAA
* * * * *
4452788 CATTTGACAACACATTCATCC-TTTCTTGTGGTTTTTGCTCAGACGTTCATAAAGCGTTTGACAA
61 CACTTGACAACACATTCATCCTTTTC-TGTGGCTTCTGCTCAGACGTTCATAAAACATTTGACAA
4452852 CACATTCATCATTT
125 CACATTCATCATTT
4452866 TATGTGGCTT
Statistics
Matches: 123, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
158 38 0.31
159 6 0.05
160 2 0.02
161 5 0.04
162 72 0.59
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (158 bp):
GTTCATAAAACATTTGACAACACATTCATCTTTTCCTGTGGCTTCTGTCGAGATGTAAAACACTT
GACAACACATTCATCCTTTTCTGTGGCTTCTGCTCAGACGTTCATAAAACATTTGACAACACATT
CATCATTTCTTGTGGTTTTTGCTCAGAC
Found at i:4455096 original size:114 final size:114
Alignment explanation
Indices: 4454896--4455121 Score: 362
Period size: 114 Copynumber: 2.0 Consensus size: 114
4454886 GATCATGCAG
* * * *
4454896 TTCATCTTTCAATTCCAATGATCGGTTCTGGGGTTCCTACCGAATCAGATCAGATAACTCAAAGA
1 TTCATCTTTCAAATCCAATGATCGGTTCTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
* *
4454961 ACACTTTCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAA
66 ACACTTCCAGAAGATGCTATTGAGTCTCCTTATTTCTACTATGAGCAAA
* * *
4455010 TTCATCTTTTAAATCCAATGATTGGTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
1 TTCATCTTTCAAATCCAATGATCGGTTCTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
*
4455075 ACACTTCCAGAAGATGCTATTGAGTCTTCTTATTTCTACTATGAGCA
66 ACACTTCCAGAAGATGCTATTGAGTCTCCTTATTTCTACTATGAGCA
4455122 CATGGCACTT
Statistics
Matches: 102, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
114 102 1.00
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (114 bp):
TTCATCTTTCAAATCCAATGATCGGTTCTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
ACACTTCCAGAAGATGCTATTGAGTCTCCTTATTTCTACTATGAGCAAA
Found at i:4457442 original size:3 final size:3
Alignment explanation
Indices: 4457434--4457524 Score: 92
Period size: 3 Copynumber: 29.7 Consensus size: 3
4457424 GGCCCGTTTG
* * * *
4457434 TAA TAA TAA TTAA TAA TAA TAT TAG TAA TAAA TAA TAA TAT TAG TAA
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA
* * * *
4457481 TTA TAA TTA TAA TAA TAA TAA TTA TAA TAA TAA TTA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
4457525 TTTAAATGAA
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
3 66 0.92
4 6 0.08
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (3 bp):
TAA
Found at i:4460709 original size:13 final size:13
Alignment explanation
Indices: 4460688--4460747 Score: 72
Period size: 13 Copynumber: 4.8 Consensus size: 13
4460678 ATTTTATTAG
4460688 TATTTTATTTAAT
1 TATTTTATTTAAT
* *
4460701 TATTGTA-TTATT
1 TATTTTATTTAAT
4460713 TAATTTT-TTT-AT
1 T-ATTTTATTTAAT
4460725 TATTTTATTTAAT
1 TATTTTATTTAAT
4460738 TATTTTATTT
1 TATTTTATTT
4460748 TTTTGCAGTT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
11 5 0.13
12 10 0.26
13 24 0.62
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.72
Consensus pattern (13 bp):
TATTTTATTTAAT
Found at i:4460718 original size:21 final size:21
Alignment explanation
Indices: 4460688--4460738 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
4460678 ATTTTATTAG
* *
4460688 TATTTTATTTAATTATTGTAT
1 TATTTAATTTAATTATTATAT
** *
4460709 TATTTAATTTTTTTATTATTT
1 TATTTAATTTAATTATTATAT
4460730 TATTTAATT
1 TATTTAATT
4460739 ATTTTATTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (21 bp):
TATTTAATTTAATTATTATAT
Found at i:4460723 original size:29 final size:29
Alignment explanation
Indices: 4460690--4460751 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 29
4460680 TTTATTAGTA
4460690 TTTTATT-TAATTATTGT-ATTATTTAATTT
1 TTTTATTAT-ATTATT-TAATTATTTAATTT
* *
4460719 TTTTATTATTTTATTTAATTATTTTATTT
1 TTTTATTATATTATTTAATTATTTAATTT
4460748 TTTT
1 TTTT
4460752 GCAGTTACAC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 1 0.03
29 27 0.93
30 1 0.03
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (29 bp):
TTTTATTATATTATTTAATTATTTAATTT
Found at i:4460725 original size:16 final size:16
Alignment explanation
Indices: 4460692--4460734 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
4460682 TATTAGTATT
*
4460692 TTATTTAATTATTGTA
1 TTATTTAATTTTTGTA
*
4460708 TTATTTAATTTTTTTA
1 TTATTTAATTTTTGTA
*
4460724 TTATTTTATTT
1 TTATTTAATTT
4460735 AATTATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (16 bp):
TTATTTAATTTTTGTA
Found at i:4460730 original size:8 final size:8
Alignment explanation
Indices: 4460677--4460733 Score: 53
Period size: 8 Copynumber: 7.1 Consensus size: 8
4460667 AAATTAATCA
4460677 TATTTTAT
1 TATTTTAT
*
4460685 TAGTATT-T
1 TA-TTTTAT
*
4460693 TATTTAAT
1 TATTTTAT
*
4460701 TATTGTAT
1 TATTTTAT
*
4460709 TATTTAAT
1 TATTTTAT
*
4460717 TTTTTTAT
1 TATTTTAT
4460725 TATTTTAT
1 TATTTTAT
4460733 T
1 T
4460734 TAATTATTTT
Statistics
Matches: 37, Mismatches: 10, Indels: 4
0.73 0.20 0.08
Matches are distributed among these distances:
7 2 0.05
8 32 0.86
9 3 0.08
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (8 bp):
TATTTTAT
Found at i:4460740 original size:16 final size:16
Alignment explanation
Indices: 4460677--4460747 Score: 54
Period size: 16 Copynumber: 4.3 Consensus size: 16
4460667 AAATTAATCA
* *
4460677 TATTTTATTAGTATTT
1 TATTTAATTATTATTT
* *
4460693 TATTTAATTATTGTAT
1 TATTTAATTATTATTT
*
4460709 TATTTAATT-TTTTTAT
1 TATTTAATTATTATT-T
*
4460725 TATTTTATTTAATTATTT
1 TA-TTTAATT-ATTATTT
4460743 TATTT
1 TATTT
4460748 TTTTGCAGTT
Statistics
Matches: 43, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
15 3 0.07
16 24 0.56
17 9 0.21
18 3 0.07
19 4 0.09
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (16 bp):
TATTTAATTATTATTT
Found at i:4460743 original size:21 final size:21
Alignment explanation
Indices: 4460708--4460751 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
4460698 AATTATTGTA
*
4460708 TTATTTAATTTTTTTATTATT
1 TTATTTAATTATTTTATTATT
*
4460729 TTATTTAATTATTTTATTTTT
1 TTATTTAATTATTTTATTATT
4460750 TT
1 TT
4460752 GCAGTTACAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (21 bp):
TTATTTAATTATTTTATTATT
Found at i:4460939 original size:13 final size:13
Alignment explanation
Indices: 4460917--4460954 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
4460907 TTATAACTGC
4460917 AAAAAAATAAAAT
1 AAAAAAATAAAAT
**
4460930 AATTAAATAAAAT
1 AAAAAAATAAAAT
4460943 AAAAAAATAAAA
1 AAAAAAATAAAA
4460955 AAATAATTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (13 bp):
AAAAAAATAAAAT
Found at i:4460949 original size:8 final size:8
Alignment explanation
Indices: 4460917--4460960 Score: 61
Period size: 8 Copynumber: 5.2 Consensus size: 8
4460907 TTATAACTGC
4460917 AAAAAAAT
1 AAAAAAAT
*
4460925 AAAATAATT
1 AAAA-AAAT
4460934 AAATAAAAT
1 AAA-AAAAT
4460943 AAAAAAAT
1 AAAAAAAT
4460951 AAAAAAAT
1 AAAAAAAT
4460959 AA
1 AA
4460961 TTAAAAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
8 19 0.59
9 12 0.38
10 1 0.03
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (8 bp):
AAAAAAAT
Found at i:4460959 original size:29 final size:27
Alignment explanation
Indices: 4460917--4460971 Score: 83
Period size: 29 Copynumber: 2.0 Consensus size: 27
4460907 TTATAACTGC
*
4460917 AAAAAAATAAAATAATTAAATAAAATAA
1 AAAAAAAAAAAATAATTAAA-AAAATAA
4460945 AAAAATAAAAAAATAATTAAAAAAATA
1 AAAAA-AAAAAAATAATTAAAAAAATA
4460972 CTAACAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 11 0.44
29 14 0.56
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (27 bp):
AAAAAAAAAAAATAATTAAAAAAATAA
Found at i:4461510 original size:31 final size:31
Alignment explanation
Indices: 4461470--4461538 Score: 111
Period size: 31 Copynumber: 2.2 Consensus size: 31
4461460 TACAATACAA
*
4461470 TCCCCTAACATTTAGTCTATTTGTAATATGG
1 TCCCCTAACATTTAGTCCATTTGTAATATGG
* *
4461501 TCCCTTAACATTTAGTCCGTTTGTAATATGG
1 TCCCCTAACATTTAGTCCATTTGTAATATGG
4461532 TCCCCTA
1 TCCCCTA
4461539 TGTAATTGTT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.41
Consensus pattern (31 bp):
TCCCCTAACATTTAGTCCATTTGTAATATGG
Found at i:4470414 original size:11 final size:11
Alignment explanation
Indices: 4470382--4470415 Score: 50
Period size: 12 Copynumber: 3.0 Consensus size: 11
4470372 TTTTTGTAAA
4470382 AATAATATTTT
1 AATAATATTTT
4470393 AGATAATATTTT
1 A-ATAATATTTT
*
4470405 AATAAAATTTT
1 AATAATATTTT
4470416 TTTAAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (11 bp):
AATAATATTTT
Found at i:4470445 original size:41 final size:41
Alignment explanation
Indices: 4470364--4470445 Score: 105
Period size: 41 Copynumber: 2.0 Consensus size: 41
4470354 AATTAACGAA
* * *
4470364 AATAATATTTTTTGTAAAAATAATATTTTAGATAATATTTT
1 AATAAAATTTTTTGTAAAAATAATATTTCAGATAAAATTTT
4470405 AATAAAATTTTTT-TAAAAAATAATAATTTCA-ATAAAATTTT
1 AATAAAATTTTTTGT-AAAAATAAT-ATTTCAGATAAAATTTT
4470446 TCCTTAACAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
40 1 0.03
41 30 0.83
42 5 0.14
ACGTcount: A:0.49, C:0.01, G:0.02, T:0.48
Consensus pattern (41 bp):
AATAAAATTTTTTGTAAAAATAATATTTCAGATAAAATTTT
Found at i:4470736 original size:29 final size:29
Alignment explanation
Indices: 4470681--4470736 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
4470671 CATTCAAACT
* * * *
4470681 GAAATTAAATATATTTGTTTCAGAAATCC
1 GAAATAAAATAGATTTGTTTAAAAAATCC
4470710 GAAATAAAATAGATTTGTTTAAAAAAT
1 GAAATAAAATAGATTTGTTTAAAAAAT
4470737 AATTTGATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.48, C:0.05, G:0.11, T:0.36
Consensus pattern (29 bp):
GAAATAAAATAGATTTGTTTAAAAAATCC
Found at i:4470741 original size:16 final size:16
Alignment explanation
Indices: 4470715--4470754 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
4470705 AATCCGAAAT
* *
4470715 AAAATAGATTTGTTTAA
1 AAAATA-ATTTGATAAA
4470732 AAAATAATTTGATAAA
1 AAAATAATTTGATAAA
4470748 AAAATAA
1 AAAATAA
4470755 CATCAAAGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (16 bp):
AAAATAATTTGATAAA
Found at i:4476630 original size:31 final size:31
Alignment explanation
Indices: 4476609--4476685 Score: 136
Period size: 31 Copynumber: 2.5 Consensus size: 31
4476599 CTAGAGACTT
4476609 CGGCGGCGGACGTGTGTCCTTCTGGAACCAA
1 CGGCGGCGGACGTGTGTCCTTCTGGAACCAA
* *
4476640 CAGCGGTGGACGTGTGTCCTTCTGGAACCAA
1 CGGCGGCGGACGTGTGTCCTTCTGGAACCAA
4476671 CGGCGGCGGACGTGT
1 CGGCGGCGGACGTGT
4476686 CCCTAGGGTT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.16, C:0.27, G:0.38, T:0.19
Consensus pattern (31 bp):
CGGCGGCGGACGTGTGTCCTTCTGGAACCAA
Found at i:4476925 original size:6 final size:6
Alignment explanation
Indices: 4476902--4476984 Score: 69
Period size: 6 Copynumber: 14.0 Consensus size: 6
4476892 TAATTTTTAT
* * * * *
4476902 TAATAA AAAT-A TAATAA TAGTAA TAATAA TAATTA TAACAA TTATAA
1 TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA
* * * * *
4476949 TAATAA TTATAA CAATTA TAACAA TAAAAA TAATAA
1 TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA
4476985 AACGGGCAAA
Statistics
Matches: 57, Mismatches: 19, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
5 4 0.07
6 53 0.93
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.33
Consensus pattern (6 bp):
TAATAA
Found at i:4476948 original size:21 final size:21
Alignment explanation
Indices: 4476924--4476975 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
4476914 AATAATAGTA
4476924 ATAATAATAATTATAACAATT
1 ATAATAATAATTATAACAATT
4476945 ATAATAATAATTATAACAATT
1 ATAATAATAATTATAACAATT
*
4476966 ATAACAATAA
1 ATAATAATAA
4476976 AAATAATAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.35
Consensus pattern (21 bp):
ATAATAATAATTATAACAATT
Found at i:4476949 original size:30 final size:30
Alignment explanation
Indices: 4476915--4476984 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 30
4476905 TAAAAATATA
* *
4476915 ATAATAGTAATAATAATAATTATAACAATT
1 ATAATAATAATAATAACAATTATAACAATT
* *
4476945 ATAATAATAATTATAACAATTATAACAATA
1 ATAATAATAATAATAACAATTATAACAATT
*
4476975 AAAATAATAA
1 ATAATAATAA
4476985 AACGGGCAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.61, C:0.04, G:0.01, T:0.33
Consensus pattern (30 bp):
ATAATAATAATAATAACAATTATAACAATT
Found at i:4476960 original size:9 final size:9
Alignment explanation
Indices: 4476902--4476984 Score: 69
Period size: 9 Copynumber: 9.3 Consensus size: 9
4476892 TAATTTTTAT
*
4476902 TAATAAAAA
1 TAATAATAA
4476911 T-ATAATAA
1 TAATAATAA
*
4476919 TAGTAATAA
1 TAATAATAA
*
4476928 TAATAATTA
1 TAATAATAA
* *
4476937 TAACAATTA
1 TAATAATAA
4476946 TAATAATAA
1 TAATAATAA
* *
4476955 TTATAACAA
1 TAATAATAA
* *
4476964 TTATAACAA
1 TAATAATAA
*
4476973 TAAAAATAA
1 TAATAATAA
4476982 TAA
1 TAA
4476985 AACGGGCAAA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
8 7 0.11
9 54 0.89
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.33
Consensus pattern (9 bp):
TAATAATAA
Found at i:4476981 original size:21 final size:21
Alignment explanation
Indices: 4476936--4476981 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
4476926 AATAATAATT
* **
4476936 ATAACAATTATAATAATAATT
1 ATAACAATTATAACAATAAAA
4476957 ATAACAATTATAACAATAAAA
1 ATAACAATTATAACAATAAAA
4476978 ATAA
1 ATAA
4476982 TAAAACGGGC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (21 bp):
ATAACAATTATAACAATAAAA
Found at i:4477518 original size:113 final size:113
Alignment explanation
Indices: 4477335--4478312 Score: 1609
Period size: 113 Copynumber: 8.6 Consensus size: 113
4477325 AGAATCATGC
*
4477335 AAAAGATTGACCAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAG-TTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * * * * * *
4477400 TATGAACTC-TCTCTGGAAAAGTTGATCCATCGAGTGATGAATTCGAGCA
65 TATGAACTCGAC-CTGGTAATGCTGATCCATCGAATGATGAATTCAAGCG
* *
4477449 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCATATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* ** * * * *
4477514 ATGAACTCGCCCTGACAATGCTAATCCATCGAATGATAAATTTAAGTG
66 ATGAACTCGACCTGGTAATGCTGATCCATCGAATGATGAATTCAAGCG
* * *
4477562 AAAAGTTGAACAAGTTCTTCTCATTATGAAATTTTTCTTCATTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * * *
4477627 ATGAACTCGATCTGGCAATGCTGATCTATCGAATGATGAATTCAAGTG
66 ATGAACTCGACCTGGTAATGCTGATCCATCGAATGATGAATTCAAGCG
4477675 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * * * *
4477740 ATGAACTCGACCTGGCAATGTTGATCTATCGAATAATAAATTCAAGCG
66 ATGAACTCGACCTGGTAATGCTGATCCATCGAATGATGAATTCAAGCG
*
4477788 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTATTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
*
4477853 ATGAACTCGACCTAGTAATGCTGATCCATCGAATGATGAATTCAAGCG
66 ATGAACTCGACCTGGTAATGCTGATCCATCGAATGATGAATTCAAGCG
4477901 AAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTC-CAT
1 -AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
4477965 TATGAACTCGACCTGGTAATGCTGATCCATCGAATGATGAATTCAAGCG
65 TATGAACTCGACCTGGTAATGCTGATCCATCGAATGATGAATTCAAGCG
4478014 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
*
4478079 ATGAACTCGACCTGGTAATGCTGATCCATCGAATGATGAATTCAAGTG
66 ATGAACTCGACCTGGTAATGCTGATCCATCGAATGATGAATTCAAGCG
4478127 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
4478192 ATGAACTCGACCTGGTAATGCTGATCCATCGAATGATGAATTCAAGCG
66 ATGAACTCGACCTGGTAATGCTGATCCATCGAATGATGAATTCAAGCG
* *
4478240 AAAAGTTGAACAAATTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
4478305 ATGAACTC
66 ATGAACTC
4478313 TTCCAGAAAT
Statistics
Matches: 814, Mismatches: 47, Indels: 7
0.94 0.05 0.01
Matches are distributed among these distances:
112 60 0.07
113 689 0.85
114 65 0.08
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (113 bp):
AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
ATGAACTCGACCTGGTAATGCTGATCCATCGAATGATGAATTCAAGCG
Found at i:4478772 original size:22 final size:22
Alignment explanation
Indices: 4478747--4478801 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
4478737 GATAAAGCTT
*
4478747 TCATCTTTGAAAAGAGAATCTG
1 TCATCTTTGAAAAGAGAATCTA
* *
4478769 TCATCTTTAAAAAGGGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
4478791 TCATCTTTGAA
1 TCATCTTTGAA
4478802 GAGTGTAGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.35
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:4481001 original size:30 final size:30
Alignment explanation
Indices: 4480965--4481024 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
4480955 CACCATGCTG
*
4480965 CTCTTGAACAGACATTGATGTACTGTCTAC
1 CTCTTGAACAGACATTGATGTACTGGCTAC
* *
4480995 CTCTTGAATAGGCATTGATGTACTGGCTAC
1 CTCTTGAACAGACATTGATGTACTGGCTAC
4481025 GAGTTCATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (30 bp):
CTCTTGAACAGACATTGATGTACTGGCTAC
Found at i:4494536 original size:31 final size:31
Alignment explanation
Indices: 4494498--4494591 Score: 188
Period size: 31 Copynumber: 3.0 Consensus size: 31
4494488 AGAATCTAAT
4494498 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
4494529 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
4494560 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
4494591 C
1 C
4494592 CCTCGACTCT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.19
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:4497873 original size:14 final size:15
Alignment explanation
Indices: 4497839--4497878 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
4497829 CATAAAAATA
* *
4497839 CAAATGCAAAGATGC
1 CAAATGTAAATATGC
4497854 CAAATGTAAATATG-
1 CAAATGTAAATATGC
4497868 CAAATGTAAAT
1 CAAATGTAAAT
4497879 GTAAATTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.50, C:0.12, G:0.15, T:0.23
Consensus pattern (15 bp):
CAAATGTAAATATGC
Found at i:4501696 original size:3 final size:3
Alignment explanation
Indices: 4501688--4501777 Score: 74
Period size: 3 Copynumber: 30.0 Consensus size: 3
4501678 CTGTAATATG
* * * *
4501688 TAA TAA TAA TATT TAT TAA TAA AAA T-A TAA TAA TAG TAA TAA TAA
1 TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * *
4501733 TAA TTA TAA CAA TTA TAA TAA TAA TTA TAA TAA TTA TAA CAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
4501778 AAAAATAAAA
Statistics
Matches: 67, Mismatches: 18, Indels: 4
0.75 0.20 0.04
Matches are distributed among these distances:
2 2 0.03
3 63 0.94
4 2 0.03
ACGTcount: A:0.59, C:0.02, G:0.01, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:4501750 original size:21 final size:21
Alignment explanation
Indices: 4501726--4501777 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
4501716 AATAATAGTA
4501726 ATAATAATAATTATAACAATT
1 ATAATAATAATTATAACAATT
*
4501747 ATAATAATAATTATAATAATT
1 ATAATAATAATTATAACAATT
*
4501768 ATAACAATAA
1 ATAATAATAA
4501778 AAAAATAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.37
Consensus pattern (21 bp):
ATAATAATAATTATAACAATT
Found at i:4501751 original size:30 final size:32
Alignment explanation
Indices: 4501681--4501776 Score: 106
Period size: 30 Copynumber: 2.9 Consensus size: 32
4501671 ATTGGGCCTG
*
4501681 TAATATGTAATAATAATATTTATTAATAAAAATATAA
1 TAATA-GTAATAATAATA---ATT-ATAACAATATAA
4501718 TAATAGTAATAATAATAATTATAACAAT-T-A
1 TAATAGTAATAATAATAATTATAACAATATAA
* *
4501748 TAATAATAATTATAATAATTATAACAATA
1 TAATAGTAATAATAATAATTATAACAATA
4501777 AAAAAATAAA
Statistics
Matches: 55, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
30 27 0.49
31 1 0.02
32 7 0.13
33 3 0.05
36 12 0.22
37 5 0.09
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (32 bp):
TAATAGTAATAATAATAATTATAACAATATAA
Found at i:4503460 original size:15 final size:15
Alignment explanation
Indices: 4503402--4503461 Score: 66
Period size: 15 Copynumber: 4.0 Consensus size: 15
4503392 ATTTTATTAG
* *
4503402 TATGTGAACATGTTA
1 TATGTGAATATGTTC
*
4503417 TATGTGAATGTGTTC
1 TATGTGAATATGTTC
* *
4503432 TATATGAAAATGTTC
1 TATGTGAATATGTTC
*
4503447 TATGTGAATGTGTTC
1 TATGTGAATATGTTC
4503462 AACGTGGAAA
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.43
Consensus pattern (15 bp):
TATGTGAATATGTTC
Found at i:4503608 original size:23 final size:23
Alignment explanation
Indices: 4503582--4503652 Score: 79
Period size: 23 Copynumber: 3.1 Consensus size: 23
4503572 GGTTCTACGC
4503582 GGTCCTTCGGGACAATTCTATAT
1 GGTCCTTCGGGACAATTCTATAT
* * **
4503605 GGTCATTCAGGACAATTCTACGT
1 GGTCCTTCGGGACAATTCTATAT
* * *
4503628 TGTCCTTAGGGACAAATCTATAT
1 GGTCCTTCGGGACAATTCTATAT
4503651 GG
1 GG
4503653 CACTTTGGTG
Statistics
Matches: 36, Mismatches: 12, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (23 bp):
GGTCCTTCGGGACAATTCTATAT
Found at i:4503862 original size:16 final size:16
Alignment explanation
Indices: 4503841--4503882 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
4503831 TGAAATGCAT
4503841 AATGTTTTCCGTATTC
1 AATGTTTTCCGTATTC
**
4503857 AATGTTTTTTGGTATTC
1 AATG-TTTTCCGTATTC
4503874 AATGTTTTC
1 AATGTTTTC
4503883 TTTGAAATGT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 8 0.36
17 14 0.64
ACGTcount: A:0.19, C:0.12, G:0.14, T:0.55
Consensus pattern (16 bp):
AATGTTTTCCGTATTC
Found at i:4512570 original size:117 final size:114
Alignment explanation
Indices: 4512417--4512646 Score: 433
Period size: 117 Copynumber: 2.0 Consensus size: 114
4512407 TCAAATGTCA
4512417 TTTTAATCCTTACTCAAGGTAAAATTAAGTTAATCTTAAAATAATTTCAAAACGATTTTACAAAA
1 TTTTAATCCTTACTCAAGGTAAAATTAAGTTAATCTTAAAATAATTTCAAAACGATTTTACAAAA
4512482 TATTTCGAACCATCTCAAAGCCAAAAATTCCAGATTGCTCAGAGGGAAT
66 TATTTCGAACCATCTCAAAGCCAAAAATTCCAGATTGCTCAGAGGGAAT
4512531 TTTTAATCCTTACTCAAGTGTAAAATTAAGTTTTAATCTTAAAATAATTTCAAAACGATTTTACA
1 TTTTAATCCTTACTCAAG-GTAAAATTAAG--TTAATCTTAAAATAATTTCAAAACGATTTTACA
4512596 AAATATTTCGAACCATCTCAAAGCCAAAAATTCCAGATTGCTCAGAGGGAA
63 AAATATTTCGAACCATCTCAAAGCCAAAAATTCCAGATTGCTCAGAGGGAA
4512647 CCGATTCCCT
Statistics
Matches: 113, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
114 18 0.16
115 11 0.10
117 84 0.74
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.32
Consensus pattern (114 bp):
TTTTAATCCTTACTCAAGGTAAAATTAAGTTAATCTTAAAATAATTTCAAAACGATTTTACAAAA
TATTTCGAACCATCTCAAAGCCAAAAATTCCAGATTGCTCAGAGGGAAT
Found at i:4512673 original size:22 final size:21
Alignment explanation
Indices: 4512648--4512700 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
4512638 CAGAGGGAAC
* *
4512648 CGATTCCCTTCTAAAAGGGTA
1 CGATTCCCCTCCAAAAGGGTA
*
4512669 TCGATTCCCCTCCAAGAGGGTA
1 -CGATTCCCCTCCAAAAGGGTA
4512691 CTGATTCCCC
1 C-GATTCCCC
4512701 CTTAATGGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 1 0.04
22 26 0.96
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.26
Consensus pattern (21 bp):
CGATTCCCCTCCAAAAGGGTA
Found at i:4518629 original size:17 final size:17
Alignment explanation
Indices: 4518596--4518629 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
4518586 TTGAATATTT
* *
4518596 TGGATTGTTTGATTTTG
1 TGGATTGTTAGACTTTG
4518613 TGGATTGTTAGACTTTG
1 TGGATTGTTAGACTTTG
4518630 GATTTGTTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.03, G:0.29, T:0.53
Consensus pattern (17 bp):
TGGATTGTTAGACTTTG
Found at i:4519264 original size:23 final size:23
Alignment explanation
Indices: 4519237--4519300 Score: 94
Period size: 22 Copynumber: 2.8 Consensus size: 23
4519227 CAGATTGCTC
* *
4519237 AGAGGGAACCTATTCCCCCCCCA
1 AGAGGGTACCGATTCCCCCCCCA
*
4519260 AGAGGGTACCGATT-CCCCTCCA
1 AGAGGGTACCGATTCCCCCCCCA
4519282 AGAGGGTACCGATTCCCCC
1 AGAGGGTACCGATTCCCCC
4519301 TTAATGGTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
22 21 0.57
23 16 0.43
ACGTcount: A:0.23, C:0.39, G:0.22, T:0.16
Consensus pattern (23 bp):
AGAGGGTACCGATTCCCCCCCCA
Found at i:4520127 original size:21 final size:21
Alignment explanation
Indices: 4520087--4520128 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
4520077 TATAATAATA
*
4520087 ATTAGTTAAGAGGTTGTTAGT
1 ATTAGTTAAAAGGTTGTTAGT
* *
4520108 ATTAGTTAAAAGTTTTTTAGT
1 ATTAGTTAAAAGGTTGTTAGT
4520129 GTTTGATGTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.48
Consensus pattern (21 bp):
ATTAGTTAAAAGGTTGTTAGT
Found at i:4533662 original size:63 final size:63
Alignment explanation
Indices: 4533575--4533740 Score: 260
Period size: 63 Copynumber: 2.6 Consensus size: 63
4533565 CGCCTGCATA
*
4533575 CCTCCTCCTCCTCGGTACTTTGCACATCCTTCATTTCCTCATGCTCATGGTTATGGGGCCATT
1 CCTCCTCCTCCTCAGTACTTTGCACATCCTTCATTTCCTCATGCTCATGGTTATGGGGCCATT
* * * * * *
4533638 CCTCCTCCTCATCAGTACTATGCACATCCTTTAATTCCTCATGTTCATGGTTATGGGGGCATT
1 CCTCCTCCTCCTCAGTACTTTGCACATCCTTCATTTCCTCATGCTCATGGTTATGGGGCCATT
*
4533701 CCTCCTCCTCCCCAGTACTTTGCACATCCTTCATTTCCTC
1 CCTCCTCCTCCTCAGTACTTTGCACATCCTTCATTTCCTC
4533741 CTCATGATCA
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
63 91 1.00
ACGTcount: A:0.15, C:0.36, G:0.13, T:0.36
Consensus pattern (63 bp):
CCTCCTCCTCCTCAGTACTTTGCACATCCTTCATTTCCTCATGCTCATGGTTATGGGGCCATT
Found at i:4534819 original size:44 final size:43
Alignment explanation
Indices: 4534748--4535099 Score: 179
Period size: 43 Copynumber: 8.2 Consensus size: 43
4534738 GGGTTTAAAC
*
4534748 TATAAAA-GTAAAAAGT-ATGATTGAAAAAATTAGGTACCTCAAT
1 TATAAAAGGTAAAAATTGA-GATTGAAAAAATTAGG-ACCTCAAT
* * **
4534791 TATAAAAGGTAAAAATTGAGATTAAAAAAATTAGGGGCCTTGAT
1 TATAAAAGGTAAAAATTGAGATTGAAAAAATTA-GGACCTCAAT
* * * ** *
4534835 T-TTAAAGGTCAAAAGTGAGATTGAAAAAATTAGGGGTCTAAAT
1 TATAAAAGGTAAAAATTGAGATTGAAAAAATTA-GGACCTCAAT
* ** * * *
4534878 TAT-ATACTTAAAAAATGGGATTG-AAAAATTAGGGGCCTCAAT
1 TATAAAAGGTAAAAATTGAGATTGAAAAAATTA-GGACCTCAAT
* * * * * **
4534920 TA-CAAATGTAAAAATTGAGATGGAAAAAATCAAGAGTTCAAT
1 TATAAAAGGTAAAAATTGAGATTGAAAAAATTAGGACCTCAAT
* * * * *
4534962 TAT-AAAGGTACAAAGTGGGATTGAAAAACTTAGGATCATCAAT
1 TATAAAAGGTAAAAATTGAGATTGAAAAAATTAGGA-CCTCAAT
*** *
4535005 TATAAATATAAAAAAATTG-GATTGAAAAAATTAAAGG-TCTCAAT
1 TATAAA-AGGTAAAAATTGAGATTGAAAAAATT--AGGACCTCAAT
* * *
4535049 TAT-AAAGATCAAAATAT-AGGATT-ACAAAAACTAGAGACCTCAAT
1 TATAAAAGGTAAAAAT-TGA-GATTGA-AAAAATTAG-GACCTCAAT
4535093 TATAAAA
1 TATAAAA
4535100 TTATAAAACT
Statistics
Matches: 236, Mismatches: 54, Indels: 36
0.72 0.17 0.11
Matches are distributed among these distances:
42 74 0.31
43 77 0.33
44 69 0.29
45 13 0.06
46 3 0.01
ACGTcount: A:0.49, C:0.07, G:0.17, T:0.27
Consensus pattern (43 bp):
TATAAAAGGTAAAAATTGAGATTGAAAAAATTAGGACCTCAAT
Found at i:4534879 original size:87 final size:85
Alignment explanation
Indices: 4534758--4534915 Score: 192
Period size: 87 Copynumber: 1.8 Consensus size: 85
4534748 TATAAAAGTA
* * * *
4534758 AAAAGTATGATTGAAAAAATTAGGTACCTCAATTATAAAAGGTAAAAATTGAGATTAAAAAAATT
1 AAAAGTATGATTGAAAAAATTAGGGACCTAAATTAT-AAACGTAAAAAATGAGATT-AAAAAATT
4534823 AGGGGCCTTGATTTTAAAGGTC
64 AGGGGCCTTGATTTTAAAGGTC
** * * * *
4534845 AAAAGTGA-GATTGAAAAAATTAGGGGTCTAAATTATATACTTAAAAAATGGGATTGAAAAATTA
1 AAAAGT-ATGATTGAAAAAATTAGGGACCTAAATTATAAACGTAAAAAATGAGATTAAAAAATTA
4534909 GGGGCCT
65 GGGGCCT
4534916 CAATTACAAA
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
85 15 0.25
86 14 0.23
87 30 0.50
88 1 0.02
ACGTcount: A:0.46, C:0.06, G:0.20, T:0.28
Consensus pattern (85 bp):
AAAAGTATGATTGAAAAAATTAGGGACCTAAATTATAAACGTAAAAAATGAGATTAAAAAATTAG
GGGCCTTGATTTTAAAGGTC
Found at i:4534932 original size:42 final size:42
Alignment explanation
Indices: 4534748--4535055 Score: 181
Period size: 43 Copynumber: 7.2 Consensus size: 42
4534738 GGGTTTAAAC
* * **
4534748 TATAAAAGTAAAAAGT-ATGATTGAAAAAATTAGGTACCTCAAT
1 TATAAAGGTAAAAAATGA-GATTG-AAAAATTAGGGGCCTCAAT
* * **
4534791 TATAAAAGGTAAAAATTGAGATTAAAAAAATTAGGGGCCTTGAT
1 TAT-AAAGGTAAAAAATGAGATT-GAAAAATTAGGGGCCTCAAT
* * * * *
4534835 TTTAAAGGTCAAAAGTGAGATTGAAAAAATTAGGGGTCTAAAT
1 TATAAAGGTAAAAAATGAGATTG-AAAAATTAGGGGCCTCAAT
* ** *
4534878 TATATACTTAAAAAATGGGATTGAAAAATTAGGGGCCTCAAT
1 TATAAAGGTAAAAAATGAGATTGAAAAATTAGGGGCCTCAAT
* * * * * * * *
4534920 TACAAATGTAAAAATTGAGATGGAAAAAATCAAGAG-TTCAAT
1 TATAAAGGTAAAAAATGAGATTG-AAAAATTAGGGGCCTCAAT
* * * ** *
4534962 TATAAAGGTACAAAGTGGGATTGAAAAACTTAGGATCATCAAT
1 TATAAAGGTAAAAAATGAGATTGAAAAA-TTAGGGGCCTCAAT
** ** *
4535005 TATAAATATAAAAAAATTG-GATTGAAAAAATTAAAGGTCTCAAT
1 TATAAAGGT-AAAAAA-TGAGATTG-AAAAATTAGGGGCCTCAAT
4535049 TATAAAG
1 TATAAAG
4535056 ATCAAAATAT
Statistics
Matches: 200, Mismatches: 55, Indels: 19
0.73 0.20 0.07
Matches are distributed among these distances:
41 5 0.03
42 59 0.29
43 73 0.37
44 55 0.28
45 8 0.04
ACGTcount: A:0.48, C:0.06, G:0.18, T:0.27
Consensus pattern (42 bp):
TATAAAGGTAAAAAATGAGATTGAAAAATTAGGGGCCTCAAT
Found at i:4534995 original size:85 final size:85
Alignment explanation
Indices: 4534893--4535055 Score: 206
Period size: 87 Copynumber: 1.9 Consensus size: 85
4534883 ACTTAAAAAA
* * *
4534893 TGGGATTGAAAAATTAGGGGCCTCAATTACAAATGT-AAAAATTGAGATGGAAAAAATC-AAGAG
1 TGGGATTGAAAAATTAGGAGCATCAATTACAAATATAAAAAATTG-GATGGAAAAAATCAAAG-G
4534956 T-TCAATTATAAAGGTACAAAG
64 TCTCAATTATAAAGGTACAAAG
* * * *
4534977 TGGGATTGAAAAACTTAGGATCATCAATTATAAATATAAAAAAATTGGATTGAAAAAATTAAAGG
1 TGGGATTGAAAAA-TTAGGAGCATCAATTACAAATAT-AAAAAATTGGATGGAAAAAATCAAAGG
4535042 TCTCAATTATAAAG
64 TCTCAATTATAAAG
4535056 ATCAAAATAT
Statistics
Matches: 67, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
84 13 0.19
85 18 0.27
86 13 0.19
87 23 0.34
ACGTcount: A:0.48, C:0.07, G:0.18, T:0.26
Consensus pattern (85 bp):
TGGGATTGAAAAATTAGGAGCATCAATTACAAATATAAAAAATTGGATGGAAAAAATCAAAGGTC
TCAATTATAAAGGTACAAAG
Found at i:4536483 original size:35 final size:35
Alignment explanation
Indices: 4536439--4536517 Score: 158
Period size: 35 Copynumber: 2.3 Consensus size: 35
4536429 AATCATAAAA
4536439 ATAAACCCAAAAAAAATCAGCATATACAAAATTAT
1 ATAAACCCAAAAAAAATCAGCATATACAAAATTAT
4536474 ATAAACCCAAAAAAAATCAGCATATACAAAATTAT
1 ATAAACCCAAAAAAAATCAGCATATACAAAATTAT
4536509 ATAAACCCA
1 ATAAACCCA
4536518 TTGCTATACA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 44 1.00
ACGTcount: A:0.59, C:0.19, G:0.03, T:0.19
Consensus pattern (35 bp):
ATAAACCCAAAAAAAATCAGCATATACAAAATTAT
Found at i:4537317 original size:21 final size:22
Alignment explanation
Indices: 4537278--4537319 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
4537268 TGAATCATTT
* *
4537278 TAAAAGTATATTTATAATATTA
1 TAAAAATATATTTAAAATATTA
4537300 TAAAAATAT-TTTAAAATATT
1 TAAAAATATATTTAAAATATT
4537320 TATTTAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (22 bp):
TAAAAATATATTTAAAATATTA
Found at i:4537322 original size:22 final size:23
Alignment explanation
Indices: 4537274--4537322 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
4537264 ATATTGAATC
* *
4537274 ATTT-TAAAAGTATATTTATAAT
1 ATTTATAAAAATATATTTAAAAT
4537296 A-TTATAAAAATAT-TTTAAAAT
1 ATTTATAAAAATATATTTAAAAT
4537317 ATTTAT
1 ATTTAT
4537323 TTAATTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (23 bp):
ATTTATAAAAATATATTTAAAAT
Found at i:4537541 original size:20 final size:19
Alignment explanation
Indices: 4537467--4537543 Score: 52
Period size: 20 Copynumber: 3.9 Consensus size: 19
4537457 AATTTAGAAT
* *
4537467 TAAATAGATAGTTTAAAATA
1 TAAATATATA-TTTAAAAAA
4537487 T-AATAT-TATTTCAAATAAA
1 TAAATATATATTT-AAA-AAA
*
4537506 TAAATATCGTGA-TTAAAAAA
1 TAAATAT-AT-ATTTAAAAAA
4537526 TTAAATATATATTTAAAA
1 -TAAATATATATTTAAAA
4537544 TATTTTTATA
Statistics
Matches: 46, Mismatches: 3, Indels: 16
0.71 0.05 0.25
Matches are distributed among these distances:
17 3 0.07
18 5 0.11
19 8 0.17
20 16 0.35
21 10 0.22
22 3 0.07
23 1 0.02
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.38
Consensus pattern (19 bp):
TAAATATATATTTAAAAAA
Found at i:4537586 original size:23 final size:22
Alignment explanation
Indices: 4537534--4537618 Score: 63
Period size: 23 Copynumber: 3.9 Consensus size: 22
4537524 AATTAAATAT
* *
4537534 ATATT-TAAAATA-TTTTTATA
1 ATATTATAATATACTTTTTAGA
4537554 ATATTATAATTATACTTTTTAGA
1 ATATTATAA-TATACTTTTTAGA
*
4537577 ATGATT-TAATATACATTTTATAAA
1 AT-ATTATAATATAC-TTTT-TAGA
*
4537601 ATA-TATAAT-TATTTTTTA
1 ATATTATAATATACTTTTTA
4537619 TTTCTAAATA
Statistics
Matches: 54, Mismatches: 4, Indels: 14
0.75 0.06 0.19
Matches are distributed among these distances:
20 7 0.13
21 7 0.13
22 11 0.20
23 21 0.39
24 8 0.15
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (22 bp):
ATATTATAATATACTTTTTAGA
Done.