Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008016.1 Hibiscus syriacus cultivar Beakdansim tig00110482_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5469637
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 24 of 25
Found at i:5219969 original size:15 final size:15
Alignment explanation
Indices: 5219949--5219979 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
5219939 CTTTATTCTG
5219949 AATGCCCTGACTGAT
1 AATGCCCTGACTGAT
5219964 AATGCCCTGACTGAT
1 AATGCCCTGACTGAT
5219979 A
1 A
5219980 CTCTTGTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (15 bp):
AATGCCCTGACTGAT
Found at i:5221670 original size:132 final size:132
Alignment explanation
Indices: 5221497--5221835 Score: 601
Period size: 132 Copynumber: 2.6 Consensus size: 132
5221487 TTATTTTTAT
* * *
5221497 AAATAAGATATTTATTTACTT-AGAAATATCATAAAAGGACTTCTAGGTGCTTTAAGACAG-CTC
1 AAATAAGATATTTATTTATTTAAG-AATATCAGAAAATGACTTCTAGGTGCTTTAAGACAGCCT-
5221560 ATTTCTTAATATATTAATAAAACATTTTTCTAAAAATAATTAAAATAAATTAATATATATTATTT
64 ATTTCTTAATATATTAATAAAACATTTTTCTAAAAATAATTAAAATAAATTAATATATATTATTT
5221625 ATGA
129 ATGA
*
5221629 AAATAAGATATTTATTTATTTAAGAATATTAGAAAATGACTTCTAGGTGCTTTAAGACAGCCTAT
1 AAATAAGATATTTATTTATTTAAGAATATCAGAAAATGACTTCTAGGTGCTTTAAGACAGCCTAT
*
5221694 TTCTTAATATATTAATAAAATATTTTTCTAAAAATAATTAAAATAAATTAATATATATTATTTAT
66 TTCTTAATATATTAATAAAACATTTTTCTAAAAATAATTAAAATAAATTAATATATATTATTTAT
5221759 GA
131 GA
5221761 AAATAAGATATTTATTTATTTAAGAATATCAGAAAATGACTTCTAGGTGCTTTAAGACAGCCTAT
1 AAATAAGATATTTATTTATTTAAGAATATCAGAAAATGACTTCTAGGTGCTTTAAGACAGCCTAT
5221826 TTCTTAATAT
66 TTCTTAATAT
5221836 TAAAAAAAAT
Statistics
Matches: 199, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
132 195 0.98
133 4 0.02
ACGTcount: A:0.43, C:0.08, G:0.09, T:0.40
Consensus pattern (132 bp):
AAATAAGATATTTATTTATTTAAGAATATCAGAAAATGACTTCTAGGTGCTTTAAGACAGCCTAT
TTCTTAATATATTAATAAAACATTTTTCTAAAAATAATTAAAATAAATTAATATATATTATTTAT
GA
Found at i:5222895 original size:21 final size:21
Alignment explanation
Indices: 5222833--5222896 Score: 85
Period size: 21 Copynumber: 3.0 Consensus size: 21
5222823 TTTGCTATGG
* *
5222833 TTTGGTCTTTGTC-TGTTGTTG
1 TTTGCTCTTTGTCGT-TTGTTT
*
5222854 GTTGCTCTTTGTCGTTTGTTT
1 TTTGCTCTTTGTCGTTTGTTT
5222875 TTTGCTCTTTGTCGTTTGTTT
1 TTTGCTCTTTGTCGTTTGTTT
5222896 T
1 T
5222897 CCTTGGTTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
21 37 0.97
22 1 0.03
ACGTcount: A:0.00, C:0.12, G:0.23, T:0.64
Consensus pattern (21 bp):
TTTGCTCTTTGTCGTTTGTTT
Found at i:5223365 original size:22 final size:22
Alignment explanation
Indices: 5223311--5223365 Score: 67
Period size: 24 Copynumber: 2.4 Consensus size: 22
5223301 ATAAATTTTT
5223311 TATTAATAATAATAAAATATAA
1 TATTAATAATAATAAAATATAA
5223333 TAGTATAAATAA-AATAAAATACTAA
1 TA-T-T-AATAATAATAAAATA-TAA
5223358 TATTAATA
1 TATTAATA
5223366 TTAAAAATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
22 6 0.21
23 2 0.07
24 11 0.38
25 10 0.34
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (22 bp):
TATTAATAATAATAAAATATAA
Found at i:5231906 original size:2 final size:2
Alignment explanation
Indices: 5231901--5231936 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
5231891 TAATTTAAAC
*
5231901 TA TA TA -A TA TA TA TA TA TA TC TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
5231937 TAAAACTACT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:5233724 original size:23 final size:24
Alignment explanation
Indices: 5233696--5233741 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 24
5233686 ACATGACATG
5233696 GTACATAGATG-TTTATACATCAT
1 GTACATAGATGTTTTATACATCAT
5233719 GTACATAGATGTTTTATACATCA
1 GTACATAGATGTTTTATACATCA
5233742 CAGGAAGACT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 11 0.50
24 11 0.50
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (24 bp):
GTACATAGATGTTTTATACATCAT
Found at i:5234151 original size:77 final size:79
Alignment explanation
Indices: 5234020--5234178 Score: 277
Period size: 77 Copynumber: 2.0 Consensus size: 79
5234010 TGCAGGTTTA
5234020 TAATACACTTCGGTGTATATAGTGGGCACAACCTTATGTGTAATACACTTCGGTGTATATGGTGG
1 TAATACACTTCGGTGTATATAGTGGG-ACAACCTTATGTGTAATACACTTCGGTGTATATGGTGG
5234085 GCACGACCTTAT-TG
65 GCACGACCTTATGTG
* *
5234099 TAATACACTTCGGTGTATATGGTGGG-CAACCTTATGTGTAATACACTTCGGTGTTTATGGTGGG
1 TAATACACTTCGGTGTATATAGTGGGACAACCTTATGTGTAATACACTTCGGTGTATATGGTGGG
5234163 CACGACCTTATGTG
66 CACGACCTTATGTG
5234177 TA
1 TA
5234179 GCACTACGGT
Statistics
Matches: 77, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
77 48 0.62
78 4 0.05
79 25 0.32
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (79 bp):
TAATACACTTCGGTGTATATAGTGGGACAACCTTATGTGTAATACACTTCGGTGTATATGGTGGG
CACGACCTTATGTG
Found at i:5234189 original size:38 final size:40
Alignment explanation
Indices: 5234020--5234178 Score: 270
Period size: 40 Copynumber: 4.0 Consensus size: 40
5234010 TGCAGGTTTA
* *
5234020 TAATACACTTCGGTGTATATAGTGGGCACAACCTTATGTG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
5234060 TAATACACTTCGGTGTATATGGTGGGCACGACCTTAT-TG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
5234099 TAATACACTTCGGTGTATATGGTGGGCA--ACCTTATGTG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
*
5234137 TAATACACTTCGGTGTTTATGGTGGGCACGACCTTATGTG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
5234177 TA
1 TA
5234179 GCACTACGGT
Statistics
Matches: 113, Mismatches: 3, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
37 7 0.06
38 29 0.26
39 30 0.27
40 47 0.42
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (40 bp):
TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
Found at i:5235518 original size:206 final size:207
Alignment explanation
Indices: 5235150--5235563 Score: 821
Period size: 206 Copynumber: 2.0 Consensus size: 207
5235140 ACGACTGTTG
5235150 TAACACGCCTTAAAAGGGTGAGTACTGTTAGGGATTTTCCTCCATTTTGTGGAAGAAATGCTCCA
1 TAACACGCCTTAAAAGGGTGAGTACTGTTAGGGATTTTCCTCCATTTTGTGGAAGAAATGCTCCA
5235215 ACTTTCAACGAAGTTTCTGAATTGGAAGAATCGATTAAAAATTTTGAACGGCTTACAAGAAAAGT
66 ACTTTCAACGAAGTTTCTGAATTGGAAGAATCGATTAAAAATTTTGAACGGCTTACAAGAAAAGT
5235280 CGAATCGGATGAGGATCCAGAGGAGATTTCTAAAACTAGTGATGATTCTGAGGTTCCTCCAGGTA
131 CGAATCGGATGAGGATCCAGAGGAGATTTCTAAAACTAGTGATGATTCTGAGGTTCCTCCAGGTA
5235345 AGCTTAAATAAT
196 AGCTTAAATAAT
5235357 TAACACGCCTTAAAAGGGTGAGTACTGTTAGGGATTTTCCTCCATTTTGTGGAAGAAATGCTCCA
1 TAACACGCCTTAAAAGGGTGAGTACTGTTAGGGATTTTCCTCCATTTTGTGGAAGAAATGCTCCA
5235422 ACTTTCAACGAAGTTT-TGAATTGGAAGAATCGATTAAAAATTTTGAACGGCTTACAAGAAAAGT
66 ACTTTCAACGAAGTTTCTGAATTGGAAGAATCGATTAAAAATTTTGAACGGCTTACAAGAAAAGT
5235486 CGAATCGGATGAGGATCCAGAGGAGATTTCTAAAACTAGTGATGATTCTGAGGTTCCTCCAGGTA
131 CGAATCGGATGAGGATCCAGAGGAGATTTCTAAAACTAGTGATGATTCTGAGGTTCCTCCAGGTA
5235551 AGCTTAAATAAT
196 AGCTTAAATAAT
5235563 T
1 T
5235564 TAGAAATATT
Statistics
Matches: 207, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
206 126 0.61
207 81 0.39
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.29
Consensus pattern (207 bp):
TAACACGCCTTAAAAGGGTGAGTACTGTTAGGGATTTTCCTCCATTTTGTGGAAGAAATGCTCCA
ACTTTCAACGAAGTTTCTGAATTGGAAGAATCGATTAAAAATTTTGAACGGCTTACAAGAAAAGT
CGAATCGGATGAGGATCCAGAGGAGATTTCTAAAACTAGTGATGATTCTGAGGTTCCTCCAGGTA
AGCTTAAATAAT
Found at i:5236521 original size:37 final size:36
Alignment explanation
Indices: 5236430--5236577 Score: 178
Period size: 37 Copynumber: 4.1 Consensus size: 36
5236420 TTATAAATAT
* * * *
5236430 ATATAGATATTATATAG-TTTGAAAACATTTTTAAA
1 ATATATATAATATATAGTTTTTAAAACATTTTGAAA
*
5236465 ATATATAT-ATAATATAGTTTTAAAAACATGTTTGAAA
1 ATATATATAAT-ATATAGTTTTTAAAACAT-TTTGAAA
* *
5236502 ACATTTATAATATATAGTTTTTTAAAACATTTTGAAA
1 ATATATATAATATATAG-TTTTTAAAACATTTTGAAA
5236539 ATA-ATATAATATATA-TTTTTAAAACATTTTGAAA
1 ATATATATAATATATAGTTTTTAAAACATTTTGAAA
5236573 ATATA
1 ATATA
5236578 GAGTTTTAAA
Statistics
Matches: 98, Mismatches: 9, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
34 23 0.23
35 14 0.14
36 21 0.21
37 27 0.28
38 13 0.13
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.43
Consensus pattern (36 bp):
ATATATATAATATATAGTTTTTAAAACATTTTGAAA
Found at i:5236567 original size:60 final size:59
Alignment explanation
Indices: 5236495--5236631 Score: 170
Period size: 60 Copynumber: 2.3 Consensus size: 59
5236485 TAAAAACATG
* **
5236495 TTTGAAAACATTTAT-AATATATAGTTTTTTAAAACATTTTGAAAATAATATAATATATAT
1 TTTGAAAACATTT-TGAAAATATAGAGTTTTAAAACATTTTGAAAA-AATATAATATATAT
* * * *
5236555 TTTTAAAACATTTTGAAAATATAGAGTTTTAAAATATTTTGAAAACATATATTATATAT
1 TTTGAAAACATTTTGAAAATATAGAGTTTTAAAACATTTTGAAAAAATATAATATATAT
*
5236614 TTTGAAATCA-TTTGAAAA
1 TTTGAAAACATTTTGAAAA
5236632 CTTATATAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
58 8 0.12
59 21 0.31
60 38 0.57
ACGTcount: A:0.46, C:0.04, G:0.07, T:0.44
Consensus pattern (59 bp):
TTTGAAAACATTTTGAAAATATAGAGTTTTAAAACATTTTGAAAAAATATAATATATAT
Found at i:5236584 original size:26 final size:26
Alignment explanation
Indices: 5236546--5236599 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
5236536 AAAATAATAT
* *
5236546 AATATATATTTTTAAAACATTTTGAA
1 AATATAGAGTTTTAAAACATTTTGAA
*
5236572 AATATAGAGTTTTAAAATATTTTGAA
1 AATATAGAGTTTTAAAACATTTTGAA
5236598 AA
1 AA
5236600 CATATATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.48, C:0.02, G:0.07, T:0.43
Consensus pattern (26 bp):
AATATAGAGTTTTAAAACATTTTGAA
Found at i:5236645 original size:34 final size:35
Alignment explanation
Indices: 5236572--5236781 Score: 125
Period size: 30 Copynumber: 6.4 Consensus size: 35
5236562 ACATTTTGAA
* *
5236572 AATATAGAGTTTT-AAAATATTTTGAAAAC-ATAT
1 AATATATAGTTTTAAAAACATTTTGAAAACTATAT
* * *
5236605 ATTATATA-TTTTGAAATCA-TTTGAAAACTTATAT
1 AATATATAGTTTTAAAAACATTTTGAAAAC-TATAT
5236639 AATATATAGTTTTAAAAACATTTTTGAAAAC--TAT
1 AATATATAGTTTTAAAAACA-TTTTGAAAACTATAT
* *
5236673 -ATA-AT--TTTAAAAAATATTTTTGAAAAC--TAT
1 AATATATAGTTTTAAAAACA-TTTTGAAAACTATAT
* *
5236703 -ATA-AT--TTTAAAAAACATTTTTTAAAA-TATAT
1 AATATATAGTTTTAAAAACA-TTTTGAAAACTATAT
* *
5236734 AATATATAATTTTAACATAC-TTTTGAAAA-TATAT
1 AATATATAGTTTTAA-AAACATTTTGAAAACTATAT
*
5236768 ATTATATAGGTTTT
1 AATATATA-GTTTT
5236782 TGAAAAATAT
Statistics
Matches: 147, Mismatches: 16, Indels: 26
0.78 0.08 0.14
Matches are distributed among these distances:
30 47 0.32
31 3 0.02
32 18 0.12
33 15 0.10
34 34 0.23
35 18 0.12
36 3 0.02
37 9 0.06
ACGTcount: A:0.46, C:0.04, G:0.05, T:0.44
Consensus pattern (35 bp):
AATATATAGTTTTAAAAACATTTTGAAAACTATAT
Found at i:5236692 original size:30 final size:30
Alignment explanation
Indices: 5236641--5236736 Score: 151
Period size: 30 Copynumber: 3.3 Consensus size: 30
5236631 ACTTATATAA
*
5236641 TATATAGTTTT-AAAAACATTTTTGAAAAC
1 TATATAATTTTAAAAAACATTTTTGAAAAC
*
5236670 TATATAATTTTAAAAAATATTTTTGAAAAC
1 TATATAATTTTAAAAAACATTTTTGAAAAC
*
5236700 TATATAATTTTAAAAAACATTTTTTAAAA-
1 TATATAATTTTAAAAAACATTTTTGAAAAC
5236729 TATATAAT
1 TATATAAT
5236737 ATATAATTTT
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
29 18 0.29
30 44 0.71
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (30 bp):
TATATAATTTTAAAAAACATTTTTGAAAAC
Found at i:5236734 original size:129 final size:129
Alignment explanation
Indices: 5236451--5236795 Score: 323
Period size: 129 Copynumber: 2.6 Consensus size: 129
5236441 ATATAGTTTG
*
5236451 AAAACATTTTTAAAATATATATATAATATAGTTTTAAAAACATGTTTGAAAACATT-TATAATAT
1 AAAACATTTTTAAAATATATAT-T-ATATA-TTTT-AAATCA--TTTGAAAAC-TTATATAATAT
* **
5236515 ATAGTTTTTTAAAACA-TTTTGAAAATAATATAATATATATTTTTAAAACATTTTGAAAATATAG
59 ATAGTTTTTAAAAACATTTTTGAAAATAATATAATATATATTTAAAAAACATTTTGAAAATATAG
*
5236579 AGTTTT
124 AATTTT
* * *
5236585 AAAATATTTTGAAAACATATATTATATATTTTGAAATCATTTGAAAACTTATATAATATATAG-T
1 AAAACATTTTTAAAATATATATTATATATTTT-AAATCATTTGAAAACTTATATAATATATAGTT
* * *
5236649 TTTAAAAACATTTTTG-AAA-ACTAT-ATA-AT-TTTAAAAAATATTTTTGAAAACTATATAATT
65 TTTAAAAACATTTTTGAAAATAATATAATATATATTTAAAAAACA-TTTTGAAAA-TATAGAATT
5236709 TT
128 TT
* * *
5236711 AAAAAACATTTTTTAAAATATATAATATATAATTTTAACATACTTTTGAAAA--TATATATTATA
1 --AAAACA-TTTTTAAAATATATATTATAT-ATTTTAA-AT-CATTTGAAAACTTATATAATATA
*
5236774 TAGGTTTTTGAAAAATATTTTT
60 TA-GTTTTT-AAAAACATTTTT
5236796 ATATAATAAT
Statistics
Matches: 179, Mismatches: 19, Indels: 28
0.79 0.08 0.12
Matches are distributed among these distances:
124 8 0.04
125 11 0.06
126 12 0.07
127 4 0.02
128 20 0.11
129 58 0.32
130 8 0.04
131 22 0.12
132 16 0.09
133 1 0.01
134 19 0.11
ACGTcount: A:0.47, C:0.04, G:0.05, T:0.44
Consensus pattern (129 bp):
AAAACATTTTTAAAATATATATTATATATTTTAAATCATTTGAAAACTTATATAATATATAGTTT
TTAAAAACATTTTTGAAAATAATATAATATATATTTAAAAAACATTTTGAAAATATAGAATTTT
Found at i:5236739 original size:95 final size:92
Alignment explanation
Indices: 5236525--5236768 Score: 266
Period size: 95 Copynumber: 2.6 Consensus size: 92
5236515 ATAGTTTTTT
* * *
5236525 AAAACATTTTGAAAATAATATAATATATATTTTTAAAACATTTTGAAAATATAGAGTTTTAAAAT
1 AAAACATTTTGAAAAT-ATATAATATATATTTTAAAAACATTTTGAAAATATATAATTTTAAAAT
**
5236590 ATTTTGAAAACATATATTATATATTTTG
65 ATTTTGAAAACATATATTATATATTTAA
*
5236618 AAATCA-TTTGAAAACTTATATAATATATAGTTTTAAAAACATTTTTGAAAACTATATAATTTTA
1 AAAACATTTTGAAAA--TATATAATATATA-TTTTAAAAACA-TTTTGAAAA-TATATAATTTT-
5236682 AAAAATATTTTTGAAAAC-TATA-TA-AT-TTTAA
60 -AAAATA-TTTTGAAAACATATATTATATATTTAA
* *
5236713 AAAACATTTTTTAAAATATATAATATATAATTTTAACATAC-TTTTGAAAATATATA
1 AAAACA-TTTTGAAAATATATAATATAT-ATTTTAA-AAACATTTTGAAAATATATA
5236769 TTATATAGGT
Statistics
Matches: 130, Mismatches: 9, Indels: 24
0.80 0.06 0.15
Matches are distributed among these distances:
92 8 0.06
93 23 0.18
94 20 0.15
95 35 0.27
96 15 0.12
97 9 0.07
98 10 0.08
99 10 0.08
ACGTcount: A:0.48, C:0.05, G:0.05, T:0.43
Consensus pattern (92 bp):
AAAACATTTTGAAAATATATAATATATATTTTAAAAACATTTTGAAAATATATAATTTTAAAATA
TTTTGAAAACATATATTATATATTTAA
Found at i:5236746 original size:36 final size:34
Alignment explanation
Indices: 5236700--5236775 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 34
5236690 TTTTGAAAAC
*
5236700 TATATAATTTTAAAAAACATTTTTTAAAATATATAA
1 TATATAATTTTAAAAAAC--TTTTGAAAATATATAA
* * *
5236736 TATATAATTTTAACATACTTTTGAAAATATATAT
1 TATATAATTTTAAAAAACTTTTGAAAATATATAA
5236770 TATATA
1 TATATA
5236776 GGTTTTTGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
34 20 0.56
36 16 0.44
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.46
Consensus pattern (34 bp):
TATATAATTTTAAAAAACTTTTGAAAATATATAA
Found at i:5237075 original size:16 final size:15
Alignment explanation
Indices: 5237054--5237083 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
5237044 ATCGGTGGGT
5237054 ATCCCGGGACTGACCC
1 ATCCCGGGA-TGACCC
5237070 ATCCCGGGATGACC
1 ATCCCGGGATGACC
5237084 GGCCACATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.20, C:0.40, G:0.27, T:0.13
Consensus pattern (15 bp):
ATCCCGGGATGACCC
Found at i:5238266 original size:40 final size:40
Alignment explanation
Indices: 5238222--5238348 Score: 123
Period size: 40 Copynumber: 3.2 Consensus size: 40
5238212 AACTCCAATT
* * *
5238222 TCGCAAC-TCAGTTTCCAAATTTGCAACGCGAATATGTAAA
1 TCGCAACGTCAATCTCCAAA-TCGCAACGCGAATATGTAAA
* ** *
5238262 TCGCAACGTGAATCTGTAAATCGCAACGCGAATCTGTAAA
1 TCGCAACGTCAATCTCCAAATCGCAACGCGAATATGTAAA
** * *
5238302 TCGCAACG-CGAATCTGTAAATCGCAACGCGAATTTATAAA
1 TCGCAACGTC-AATCTCCAAATCGCAACGCGAATATGTAAA
5238342 TCGCAAC
1 TCGCAAC
5238349 ACATAAGTCA
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
40 68 0.91
41 7 0.09
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (40 bp):
TCGCAACGTCAATCTCCAAATCGCAACGCGAATATGTAAA
Found at i:5238267 original size:20 final size:20
Alignment explanation
Indices: 5238244--5238348 Score: 174
Period size: 20 Copynumber: 5.2 Consensus size: 20
5238234 TTCCAAATTT
*
5238244 GCAACGCGAATATGTAAATC
1 GCAACGCGAATCTGTAAATC
*
5238264 GCAACGTGAATCTGTAAATC
1 GCAACGCGAATCTGTAAATC
5238284 GCAACGCGAATCTGTAAATC
1 GCAACGCGAATCTGTAAATC
5238304 GCAACGCGAATCTGTAAATC
1 GCAACGCGAATCTGTAAATC
* *
5238324 GCAACGCGAATTTATAAATC
1 GCAACGCGAATCTGTAAATC
5238344 GCAAC
1 GCAAC
5238349 ACATAAGTCA
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 80 1.00
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.21
Consensus pattern (20 bp):
GCAACGCGAATCTGTAAATC
Found at i:5238386 original size:20 final size:19
Alignment explanation
Indices: 5238339--5238386 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
5238329 GCGAATTTAT
*
5238339 AAATCGCAACACATAAGTC
1 AAATCGCAACACAGAAGTC
5238358 AAATCGCAACACAGAAGTC
1 AAATCGCAACACAGAAGTC
5238377 AAATTCGCAA
1 AAA-TCGCAA
5238387 AGCGCGTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
19 21 0.78
20 6 0.22
ACGTcount: A:0.48, C:0.25, G:0.12, T:0.15
Consensus pattern (19 bp):
AAATCGCAACACAGAAGTC
Found at i:5238569 original size:22 final size:22
Alignment explanation
Indices: 5238544--5238587 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
5238534 CGATGACATC
5238544 CGTCCCCATCTCCGACGAAATT
1 CGTCCCCATCTCCGACGAAATT
* *
5238566 CGTCCCCATTTCCGGCGAAATT
1 CGTCCCCATCTCCGACGAAATT
5238588 TGTCTATCTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.20, C:0.39, G:0.16, T:0.25
Consensus pattern (22 bp):
CGTCCCCATCTCCGACGAAATT
Found at i:5239040 original size:21 final size:21
Alignment explanation
Indices: 5238981--5239046 Score: 89
Period size: 21 Copynumber: 3.1 Consensus size: 21
5238971 CGCAACTCAG
*
5238981 TTTCCAAATTCGCATTGCGAT
1 TTTCCAAATTCGCGTTGCGAT
5239002 TTTCCAAATTCGCGTTGCGAT
1 TTTCCAAATTCGCGTTGCGAT
**
5239023 TTT-CATTTTCGCGTTTGCGAT
1 TTTCCAAATTCGCG-TTGCGAT
5239044 TTT
1 TTT
5239047 AAATTTCATA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
20 8 0.20
21 33 0.80
ACGTcount: A:0.17, C:0.21, G:0.17, T:0.45
Consensus pattern (21 bp):
TTTCCAAATTCGCGTTGCGAT
Found at i:5239053 original size:21 final size:20
Alignment explanation
Indices: 5238989--5239053 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 20
5238979 AGTTTCCAAA
*
5238989 TTCGCATTGCGATTTTCCAAA-
1 TTCGCGTTGCGATTTT--AAAT
* *
5239010 TTCGCGTTGCGATTTTCATT
1 TTCGCGTTGCGATTTTAAAT
5239030 TTCGCGTTTGCGATTTTAAAT
1 TTCGCG-TTGCGATTTTAAAT
5239051 TTC
1 TTC
5239054 ATAAACTATC
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 1 0.03
20 6 0.16
21 30 0.81
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (20 bp):
TTCGCGTTGCGATTTTAAAT
Found at i:5240572 original size:15 final size:15
Alignment explanation
Indices: 5240523--5240576 Score: 65
Period size: 15 Copynumber: 3.5 Consensus size: 15
5240513 CCCCACTTCG
5240523 ATTTTTCTTTCTTTC
1 ATTTTTCTTTCTTTC
* *
5240538 ATATTTT-TTCCTTTGA
1 AT-TTTTCTTTCTTT-C
5240554 ATTTTTCTTTCTTTC
1 ATTTTTCTTTCTTTC
5240569 ATTTTTCT
1 ATTTTTCT
5240577 CATCTTTCGA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
15 20 0.62
16 12 0.38
ACGTcount: A:0.11, C:0.17, G:0.02, T:0.70
Consensus pattern (15 bp):
ATTTTTCTTTCTTTC
Found at i:5240582 original size:16 final size:16
Alignment explanation
Indices: 5240519--5240589 Score: 53
Period size: 16 Copynumber: 4.5 Consensus size: 16
5240509 CAGCCCCCAC
*
5240519 TTCGATTTTTCTTTCT
1 TTCGATTTTTCTATCT
5240535 TTC-ATATTTT-T-TCCT
1 TTCGAT-TTTTCTAT-CT
*
5240550 TT-GAATTTTTCTTTCT
1 TTCG-ATTTTTCTATCT
5240566 TTC-ATTTTTCTCATCT
1 TTCGATTTTTCT-ATCT
5240582 TTCGATTT
1 TTCGATTT
5240590 ATTTAATTTT
Statistics
Matches: 45, Mismatches: 1, Indels: 17
0.71 0.02 0.27
Matches are distributed among these distances:
14 1 0.02
15 19 0.42
16 20 0.44
17 5 0.11
ACGTcount: A:0.11, C:0.18, G:0.04, T:0.66
Consensus pattern (16 bp):
TTCGATTTTTCTATCT
Found at i:5240679 original size:4 final size:4
Alignment explanation
Indices: 5240670--5240714 Score: 58
Period size: 4 Copynumber: 11.5 Consensus size: 4
5240660 TTGATTTACC
*
5240670 ATTT ATTT ATTTT ATTT ATTT -TTT CTTT -TTT ATTT ATTT ATTT AT
1 ATTT ATTT A-TTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT AT
5240715 GTAGTTTTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
3 6 0.16
4 28 0.74
5 4 0.11
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (4 bp):
ATTT
Found at i:5244355 original size:95 final size:94
Alignment explanation
Indices: 5244163--5244344 Score: 276
Period size: 95 Copynumber: 1.9 Consensus size: 94
5244153 ATATTATATA
* * *
5244163 TATATATATAATAAAGCTAGAGTTATCCCTCTAAAGCAATTGGTTAAACGCCCCGGCTTTATGGA
1 TATATATACAATAAAGCTAGAGCTATCCCTCTAAAGCAATTGGTTAAACACCCCGGCTTTATGGA
* *
5244228 TAATATTCAGCTAGCATGATAAAGATAAT
66 TAAGATTCAGCTAACATGATAAAGATAAT
* *
5244257 TATACTATACAATAAAGCTTGAGCTGTCCCTCT-AAGTCAATTGGTTAAACACCCCGGCTTTATG
1 TATA-TATACAATAAAGCTAGAGCTATCCCTCTAAAG-CAATTGGTTAAACACCCCGGCTTTATG
5244321 GATAAGATTCAGCTAACATGATAA
64 GATAAGATTCAGCTAACATGATAA
5244345 TGTGTTTTAT
Statistics
Matches: 79, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
94 7 0.09
95 72 0.91
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (94 bp):
TATATATACAATAAAGCTAGAGCTATCCCTCTAAAGCAATTGGTTAAACACCCCGGCTTTATGGA
TAAGATTCAGCTAACATGATAAAGATAAT
Found at i:5245466 original size:84 final size:83
Alignment explanation
Indices: 5245291--5246199 Score: 836
Period size: 84 Copynumber: 10.9 Consensus size: 83
5245281 CTCAGAGAGA
* * * * * * * * *
5245291 CACATAATTTACAGCATAACTCAAGGCTATAAGAGTTATTTGTCACCAAAAGACCTTCAAGTTCG
1 CACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGTCACCAAAA-ACCTTCGAGTTCG
*
5245356 ACTACGCTTAGCTCCAAGG
65 ACTACGCTCAGCTCCAAGG
* * * * *
5245375 CATATCATTTGCAACACAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAAACCATCGAGTTCG
1 CACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGTC-ACCAAAAACCTTCGAGTTCG
*
5245440 ACTATGCTCAGCTCCAAGG
65 ACTACGCTCAGCTCCAAGG
* * * * * * *
5245459 CACATCATTTGTAGCATAGCTTAAGTTGAGAAGGGTTA--TAT-ACCAAATACCCTCGAGTTTGA
1 CACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGTCACCAAAAACCTTCGAGTTCGA
* * *
5245521 TTACACTCAGCT-TAGAGGG
66 CTACGCTCAGCTCCA-A-GG
* * * * * * *
5245540 CTCATTATTTACAACATAACTCAAGGT-TATAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTC
1 CACATCATTTGCAGCATAACTTAA-GTCGAGAAGGGTTATCTGTCACCAAAA-ACCTTCGAGTTC
* *
5245604 GATTACGCGCAGCTCCAAGG
64 GACTACGCTCAGCTCCAAGG
* * * *
5245624 CATATCATTTGCAGTATAACTTAAGTTGAGAAGGGTTATCTGTCAACCAAAGACCTTCGAGTTCG
1 CACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGTC-ACCAAAAACCTTCGAGTTCG
5245689 ACTACGCTCAGCTCCAAGG
65 ACTACGCTCAGCTCCAAGG
* * *
5245708 CACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCT-T--CCAAAGACCCTT-GAGTTCG
1 CACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGTCACCAAA-AACCTTCGAGTTCG
* * * *
5245769 ATTACACTCAGCTTCGAGGG
65 ACTACGCTCAGC-TCCAAGG
* * * *
5245789 CACATCATTTACAGCATAA-TTCAAGGCTAGAAGGGTTATATGTCACCAAAAGACCTTCGAGTTC
1 CACATCATTTGCAGCATAACTT-AAGTCGAGAAGGGTTATCTGTCACCAAAA-ACCTTCGAGTTC
*
5245853 GACTACGCTCAGCTCCAAGA
64 GACTACGCTCAGCTCCAAGG
* * * * * *
5245873 CATATCATTTGCAGTATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTTGAGTTTG
1 CACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGTC-ACCAAAAACCTTCGAGTTCG
*
5245938 ACTACGCTCAGCTCCAATG
65 ACTACGCTCAGCTCCAAGG
* * * * *
5245957 CACATCATTTGCAACATATCTTAAGTCGAGAAGGGCTATCTG---CCAAAGACCCTCGAGTTCGA
1 CACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGTCACCAAAAACCTTCGAGTTCGA
* * * * *
5246019 TTACACTCAACTTCGAGGG
66 CTACGCTCAGC-TCCAAGG
* * * * * *
5246038 CACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTTTCACCAAAAGACCATCGAGTTCG
1 CACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGTCACCAAAA-ACCTTCGAGTTCG
5246103 ACTACGCTCAGCTCCAAGG
65 ACTACGCTCAGCTCCAAGG
** * * * * * *
5246122 CACATCATTTTTAGCATAGCTTAAGTCGAGAATGGCTATCTGCTAACCGAAGACCTTCGAGTTCG
1 CACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTG-TCACCAAAAACCTTCGAGTTCG
* *
5246187 ATTACACTCAGCT
65 ACTACGCTCAGCT
5246200 TAGAGGCTAA
Statistics
Matches: 660, Mismatches: 138, Indels: 54
0.77 0.16 0.06
Matches are distributed among these distances:
79 1 0.00
80 77 0.12
81 107 0.16
82 4 0.01
83 6 0.01
84 376 0.57
85 88 0.13
86 1 0.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (83 bp):
CACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGTCACCAAAAACCTTCGAGTTCGA
CTACGCTCAGCTCCAAGG
Found at i:5245741 original size:249 final size:249
Alignment explanation
Indices: 5245291--5246199 Score: 1341
Period size: 249 Copynumber: 3.7 Consensus size: 249
5245281 CTCAGAGAGA
* * * * *
5245291 CACATAATTTACAGCATAACTCAAGGCTATAAGAGTTATTTGTCACCAAAAGACCTTCAAGTTCG
1 CACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCG
* * *
5245356 ACTACGCTTAGCTCCAAGGCATATCATTTGCAACACAACTTAAGTCGAGAAGGGTTATCTGCCAA
66 ACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAA
* * * * *
5245421 CCAAAAACCATCGAGTTCGACTATGCTCAGCTCCAAGGCACATCATTTGTAGCATAGCTTAAGTT
131 CCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTC
* * * * *
5245486 GAGAAGGGTTATATACCAAATACCCTCGAGTTTGATTACACTCAGCTTAGAGGG
196 GAGAAGGGCTATCTACCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGG
* * * * *
5245540 CTCATTATTTACAACATAACTCAAGGTTATAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCG
1 CACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCG
* * * * *
5245605 ATTACGCGCAGCTCCAAGGCATATCATTTGCAGTATAACTTAAGTTGAGAAGGGTTATCTGTCAA
66 ACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAA
5245670 CCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTC
131 CCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTC
* *
5245735 GAGAAGGGCTATCTTCCAAAGACCCTTGAGTTCGATTACACTCAGCTTCGAGGG
196 GAGAAGGGCTATCTACCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGG
* *
5245789 CACATCATTTACAGCATAATTCAAGGCTAGAAGGGTTATATGTCACCAAAAGACCTTCGAGTTCG
1 CACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCG
* *
5245854 ACTACGCTCAGCTCCAAGACATATCATTTGCAGTATAACTTAAGTCGAGAAGGGTTATCTGCCAA
66 ACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAA
* * * * *
5245919 CCAAAGACCTTTGAGTTTGACTACGCTCAGCTCCAATGCACATCATTTGCAACATATCTTAAGTC
131 CCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTC
* *
5245984 GAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAACTTCGAGGG
196 GAGAAGGGCTATCTACCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGG
* *
5246038 CACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTTTCACCAAAAGACCATCGAGTTCG
1 CACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCG
* ** * * * *
5246103 ACTACGCTCAGCTCCAAGGCACATCATTTTTAGCATAGCTTAAGTCGAGAATGGCTATCTGCTAA
66 ACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAA
* * *
5246168 CCGAAGACCTTCGAGTTCGATTACACTCAGCT
131 CCAAAGACCTTCGAGTTCGACTACGCTCAGCT
5246200 TAGAGGCTAA
Statistics
Matches: 595, Mismatches: 65, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
249 595 1.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (249 bp):
CACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCG
ACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAA
CCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTC
GAGAAGGGCTATCTACCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGG
Found at i:5245798 original size:165 final size:164
Alignment explanation
Indices: 5245325--5246199 Score: 784
Period size: 165 Copynumber: 5.3 Consensus size: 164
5245315 GGCTATAAGA
* * * * * *
5245325 GTTATTTGTCACCAAAAGACCTTCAAGTTCGACTACGCTTAGCTCCAAGGCATATCATTTGCAAC
1 GTTATCTGTCACC-AAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTGCAGC
* * * * *
5245390 ACAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAAACCATCGAGTTCGACTATGCTCAGCTCC
65 ATAACTTAAGTCGAGAAGGGTTATCT--C-TCCAAAGACCATTGAGTTCGACTACGCTCAGCTCC
* *
5245455 AAGGCACATCATTTGTAGCATAGCTTAAGTTGAGAAGG
127 AAGGCACATCATTTGCAGCATAACTTAAGTTGAGAAGG
* * * * * * * * * *
5245493 GTTA--TAT-ACCAAATACCCTCGAGTTTGATTACACTCAGCT-TAGAGGGCTCATTATTTACAA
1 GTTATCTGTCACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCA-A-GGCACATCATTTGCAG
* * * * * *
5245554 CATAACTCAAGGT-TATAAGGGTTATCTGTCACCAAAAGACC-TTCGAGTTCGATTACGCGCAGC
64 CATAACTTAA-GTCGAGAAGGGTTATC--TCTCC-AAAGACCATT-GAGTTCGACTACGCTCAGC
* *
5245617 TCCAAGGCATATCATTTGCAGTATAACTTAAGTTGAGAAGG
124 TCCAAGGCACATCATTTGCAGCATAACTTAAGTTGAGAAGG
*
5245658 GTTATCTGTCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGC
1 GTTATCTGTC-ACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTGCAGC
* * * * * * *
5245723 ATAGCTTAAGTCGAGAAGGGCTATCT-TCCAAAGACCCTTGAGTTCGATTACACTCAGCTTCGAG
65 ATAACTTAAGTCGAGAAGGGTTATCTCTCCAAAGACCATTGAGTTCGACTACGCTCAGC-TCCAA
* *
5245787 GGCACATCATTTACAGCATAA-TTCAAGGCT-AGAAGG
129 GGCACATCATTTGCAGCATAACTT-AA-GTTGAGAAGG
* * * * *
5245823 GTTATATGTCACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGACATATCATTTGCAGT
1 GTTATCTGTCACC-AAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTGCAGC
* * *
5245888 ATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTTGAGTTTGACTACGCTCAGCTCC
65 ATAACTTAAGTCGAGAAGGGTTATCT--C-TCCAAAGACCATTGAGTTCGACTACGCTCAGCTCC
* * * *
5245953 AATGCACATCATTTGCAACATATCTTAAGTCGAGAAGG
127 AAGGCACATCATTTGCAGCATAACTTAAGTTGAGAAGG
* * * * * * *
5245991 GCTATCTG---CCAAAGACCCTCGAGTTCGATTACACTCAACTTCGAGGGCACATCATTTACAGC
1 GTTATCTGTCACCAAAGACCTTCGAGTTCGACTACACTCAGC-TCCAAGGCACATCATTTGCAGC
* * * * *
5246053 ATAACTCAAGGCTAGAAGGGTTATCTTTCACCAAAAGACCATCGAGTTCGACTACGCTCAGCTCC
65 ATAACTTAAGTCGAGAAGGGTTATC--TCTCC-AAAGACCATTGAGTTCGACTACGCTCAGCTCC
** * * *
5246118 AAGGCACATCATTTTTAGCATAGCTTAAGTCGAGAATG
127 AAGGCACATCATTTGCAGCATAACTTAAGTTGAGAAGG
* * * *
5246156 GCTATCTGCTAACCGAAGACCTTCGAGTTCGATTACACTCAGCT
1 GTTATCTG-TCACCAAAGACCTTCGAGTTCGACTACACTCAGCT
5246200 TAGAGGCTAA
Statistics
Matches: 578, Mismatches: 97, Indels: 64
0.78 0.13 0.09
Matches are distributed among these distances:
163 1 0.00
164 85 0.15
165 322 0.56
166 7 0.01
167 7 0.01
168 69 0.12
169 86 0.15
170 1 0.00
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.26
Consensus pattern (164 bp):
GTTATCTGTCACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTGCAGCA
TAACTTAAGTCGAGAAGGGTTATCTCTCCAAAGACCATTGAGTTCGACTACGCTCAGCTCCAAGG
CACATCATTTGCAGCATAACTTAAGTTGAGAAGG
Found at i:5246927 original size:36 final size:36
Alignment explanation
Indices: 5246810--5247083 Score: 259
Period size: 36 Copynumber: 7.8 Consensus size: 36
5246800 ATATAGATAT
* *
5246810 TATATAG-TTTGAAAACATTTTTAAAATATATATATAA
1 TATATAGTTTTTAAAACATTTTGAAAATA-A-ATATAA
* * *
5246847 TATATAGTTTTGAAAACATGTTTGAAAATATTTATATAT
1 TATATAGTTTTTAAAACAT-TTTGAAAATA--AATATAA
5246886 TATATAGTTTTTAAAACATTTTGAAAATAAATATAA
1 TATATAGTTTTTAAAACATTTTGAAAATAAATATAA
*
5246922 TATATAGTTTTTAAAACATTTTGAAAAT--ATATAT
1 TATATAGTTTTTAAAACATTTTGAAAATAAATATAA
5246956 TATATAGTTTTTAAAAACATTTTG-----AAA-ATAA
1 TATATAGTTTTT-AAAACATTTTGAAAATAAATATAA
* * *
5246987 -ATATAGTTTTTAAAATATTTTG-AAA-ACATATAT
1 TATATAGTTTTTAAAACATTTTGAAAATAAATATAA
* * * *
5247020 TATATAGTTTTGAAATCATTTTAAAAACT-TATATAA
1 TATATAGTTTTTAAAACATTTTGAAAA-TAAATATAA
*
5247056 TATATAGTTTTAAAAACATTTTTGAAAA
1 TATATAGTTTTTAAAACA-TTTTGAAAA
5247084 CTATATAATT
Statistics
Matches: 202, Mismatches: 20, Indels: 30
0.80 0.08 0.12
Matches are distributed among these distances:
29 10 0.05
30 11 0.05
31 3 0.01
32 3 0.01
33 3 0.01
34 35 0.17
35 14 0.07
36 54 0.27
37 15 0.07
38 21 0.10
39 32 0.16
40 1 0.00
ACGTcount: A:0.46, C:0.03, G:0.07, T:0.44
Consensus pattern (36 bp):
TATATAGTTTTTAAAACATTTTGAAAATAAATATAA
Found at i:5246992 original size:64 final size:66
Alignment explanation
Indices: 5246841--5247172 Score: 279
Period size: 64 Copynumber: 4.8 Consensus size: 66
5246831 TAAAATATAT
*
5246841 ATATAATATATAGTTTTGAAAACATGTTTGAAAATATTTATATATTATATAGTTTTTAAAACATT
1 ATATAATATATAGTTTTTAAAACAT-TTTG-AAA-A--TATATATTATATAGTTTTTAAAACATT
5246906 TTGAAAATAA
61 TTG---A-AA
5246916 ATATAATATATAGTTTTTAAAACATTTTGAAAATATATATTATATAGTTTTTAAAAACATTTTG-
1 ATATAATATATAGTTTTTAAAACATTTTGAAAATATATATTATATAGTTTTT-AAAACATTTTGA
5246980 AA
65 AA
* * * * *
5246982 A-ATAA-ATATAGTTTTTAAAATATTTTGAAAACATATATTATATAGTTTTGAAATCATTTTAAA
1 ATATAATATATAGTTTTTAAAACATTTTGAAAATATATATTATATAGTTTTTAAAACATTTT-GA
5247045 AA
65 AA
* * **
5247047 CTTATATAATATATAGTTTTAAAAACATTTTTGAAAA-CTATA-TA-AT--TTTAAAAAACATTT
1 ---ATATAATATATAGTTTTTAAAACA-TTTTGAAAATATATATTATATAGTTTTTAAAACA--T
*
5247107 TTTAAAA
60 TTTGAAA
* *
5247114 TATATAATATATA-ATTTTAACATAC-TTTTGGAAATATATATTATATAGGTTTTTGAAAA
1 -ATATAATATATAGTTTTTAA-A-ACATTTTGAAAATATATATTATATA-GTTTTT-AAAA
5247173 ATATTTTTTT
Statistics
Matches: 219, Mismatches: 18, Indels: 44
0.78 0.06 0.16
Matches are distributed among these distances:
63 9 0.04
64 55 0.25
65 24 0.11
66 15 0.07
67 6 0.03
68 7 0.03
69 6 0.03
70 41 0.19
71 24 0.11
72 1 0.00
73 3 0.01
74 4 0.02
75 24 0.11
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.44
Consensus pattern (66 bp):
ATATAATATATAGTTTTTAAAACATTTTGAAAATATATATTATATAGTTTTTAAAACATTTTGAA
A
Found at i:5246998 original size:100 final size:98
Alignment explanation
Indices: 5246886--5247179 Score: 321
Period size: 100 Copynumber: 2.9 Consensus size: 98
5246876 ATTTATATAT
5246886 TATATAGTTTTTAAAACATTTTGAAAATAAATATAATATATAGTTTTTAAAACATTTTGAAAATA
1 TATATAGTTTTTAAAACATTTTGAAAAT-AATATAATATATAGTTTTTAAAACATTTTGAAAATA
5246951 TATATTATATAGTTTTTAAAAACATTTTGAAAA-
65 TATATTATATAGTTTTTAAAAACATTTTGAAAAC
* * * * * *
5246984 TAAATATAGTTTTTAAAATATTTTGAAAA-CATATATTATATAGTTTTGAAATCATTTTAAAAAC
1 T--ATATAGTTTTTAAAACATTTTGAAAATAATATAATATATAGTTTTTAAAACATTTTGAAAA-
*
5247048 TTATATAATATATAG-TTTTAAAAACATTTTTGAAAAC
63 -TATATATTATATAGTTTTTAAAAACA-TTTTGAAAAC
* * * * *
5247085 TATATAATTTTAAAAAACATTTTTTAAAAT-ATATAATATATA-ATTTTAACATAC-TTTTGGAA
1 TATATAGTTTT-TAAAACA-TTTTGAAAATAATATAATATATAGTTTTTAA-A-ACATTTTGAAA
*
5247147 ATATATATTATATAGGTTTTTGAAAAATATTTT
62 ATATATATTATATA-GTTTTT-AAAAACATTTT
5247180 TTTATATAAT
Statistics
Matches: 163, Mismatches: 19, Indels: 25
0.79 0.09 0.12
Matches are distributed among these distances:
98 30 0.18
99 32 0.20
100 58 0.36
101 36 0.22
102 7 0.04
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.45
Consensus pattern (98 bp):
TATATAGTTTTTAAAACATTTTGAAAATAATATAATATATAGTTTTTAAAACATTTTGAAAATAT
ATATTATATAGTTTTTAAAAACATTTTGAAAAC
Found at i:5247088 original size:29 final size:29
Alignment explanation
Indices: 5247054--5247121 Score: 102
Period size: 29 Copynumber: 2.3 Consensus size: 29
5247044 AAACTTATAT
*
5247054 AATATATAGTTTT-AAAAACATTTTTGAA
1 AATATATAATTTTAAAAAACATTTTTGAA
*
5247082 AACTATATAATTTTAAAAAACATTTTTTAA
1 AA-TATATAATTTTAAAAAACATTTTTGAA
5247112 AATATATAAT
1 AATATATAAT
5247122 ATATAATTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
28 2 0.06
29 18 0.50
30 16 0.44
ACGTcount: A:0.50, C:0.04, G:0.03, T:0.43
Consensus pattern (29 bp):
AATATATAATTTTAAAAAACATTTTTGAA
Found at i:5247089 original size:36 final size:34
Alignment explanation
Indices: 5246839--5247166 Score: 291
Period size: 34 Copynumber: 9.6 Consensus size: 34
5246829 TTTAAAATAT
*
5246839 ATATATAATATATAGTTTTGAAAACATGTTTGAAA
1 ATATATAATATATAGTTTTAAAAACAT-TTTGAAA
*
5246874 ATATTTATATATTATATAGTTTTTAAAACATTTTGAAA
1 ATA--TATA-A-TATATAGTTTTAAAAACATTTTGAAA
*
5246912 ATAAATATAATATATAGTTTTTAAAACATTTTGAAA
1 AT--ATATAATATATAGTTTTAAAAACATTTTGAAA
*
5246948 ATATATATTATATAGTTTTTAAAAACATTTTG--A
1 ATATATAATATATAG-TTTTAAAAACATTTTGAAA
* *
5246981 A-A-ATAA-ATATAGTTTTTAAAATATTTTGAAA
1 ATATATAATATATAGTTTTAAAAACATTTTGAAA
* * * * *
5247012 ACATATATTATATAGTTTTGAAATCATTTTAAAA
1 ATATATAATATATAGTTTTAAAAACATTTTGAAA
5247046 ACTTATATAATATATAGTTTTAAAAACATTTTTGAAA
1 A--TATATAATATATAGTTTTAAAAACA-TTTTGAAA
* * *
5247083 A-CTAT-ATA-AT--TTTAAAAAACATTTTTTAAA
1 ATATATAATATATAGTTTTAAAAACA-TTTTGAAA
* * *
5247113 ATATATAATATATAATTTTAACATAC-TTTTGGAA
1 ATATATAATATATAGTTTTAA-AAACATTTTGAAA
*
5247147 ATATATATTATATAGGTTTT
1 ATATATAATATATA-GTTTT
5247167 TGAAAAATAT
Statistics
Matches: 245, Mismatches: 26, Indels: 44
0.78 0.08 0.14
Matches are distributed among these distances:
29 14 0.06
30 25 0.10
31 8 0.03
32 7 0.03
33 10 0.04
34 56 0.23
35 27 0.11
36 52 0.21
37 13 0.05
38 14 0.06
39 18 0.07
40 1 0.00
ACGTcount: A:0.45, C:0.04, G:0.06, T:0.45
Consensus pattern (34 bp):
ATATATAATATATAGTTTTAAAAACATTTTGAAA
Found at i:5248474 original size:15 final size:15
Alignment explanation
Indices: 5248456--5248494 Score: 78
Period size: 15 Copynumber: 2.6 Consensus size: 15
5248446 ATATATATTC
5248456 TATTTATTCTATTTT
1 TATTTATTCTATTTT
5248471 TATTTATTCTATTTT
1 TATTTATTCTATTTT
5248486 TATTTATTC
1 TATTTATTC
5248495 CTTTCCTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.72
Consensus pattern (15 bp):
TATTTATTCTATTTT
Found at i:5248587 original size:2 final size:2
Alignment explanation
Indices: 5248582--5248632 Score: 75
Period size: 2 Copynumber: 25.5 Consensus size: 2
5248572 GTCATTTTTT
* * *
5248582 TA TA TA TT TA TG TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
5248624 TA TA TA TA T
1 TA TA TA TA T
5248633 TCCTCTTGAT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (2 bp):
TA
Found at i:5248657 original size:4 final size:4
Alignment explanation
Indices: 5248648--5248685 Score: 60
Period size: 4 Copynumber: 9.5 Consensus size: 4
5248638 TTGATTTACC
5248648 ATTT ATTT ATTTT ATTT A-TT ATTT ATTT ATTT ATTT AT
1 ATTT ATTT A-TTT ATTT ATTT ATTT ATTT ATTT ATTT AT
5248686 GTAGTTTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
3 3 0.09
4 25 0.78
5 4 0.12
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
ATTT
Found at i:5250448 original size:22 final size:22
Alignment explanation
Indices: 5250422--5250473 Score: 104
Period size: 22 Copynumber: 2.4 Consensus size: 22
5250412 CTGAATAGAA
5250422 CATTCAGCGTTGAATGTTGAAC
1 CATTCAGCGTTGAATGTTGAAC
5250444 CATTCAGCGTTGAATGTTGAAC
1 CATTCAGCGTTGAATGTTGAAC
5250466 CATTCAGC
1 CATTCAGC
5250474 ATTCAGACTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (22 bp):
CATTCAGCGTTGAATGTTGAAC
Found at i:5252549 original size:114 final size:114
Alignment explanation
Indices: 5252349--5252576 Score: 456
Period size: 114 Copynumber: 2.0 Consensus size: 114
5252339 GTATTAGTCA
5252349 TTCGAGGAACCGGAGAGCTACTGTTAACGACTCTAACTGTAAAAGGAGAAGAGACGGTTGCAATT
1 TTCGAGGAACCGGAGAGCTACTGTTAACGACTCTAACTGTAAAAGGAGAAGAGACGGTTGCAATT
5252414 GGATACATTGGGAAAGTATCAAGGGACGCCTAAAATGAATAAAATGACC
66 GGATACATTGGGAAAGTATCAAGGGACGCCTAAAATGAATAAAATGACC
5252463 TTCGAGGAACCGGAGAGCTACTGTTAACGACTCTAACTGTAAAAGGAGAAGAGACGGTTGCAATT
1 TTCGAGGAACCGGAGAGCTACTGTTAACGACTCTAACTGTAAAAGGAGAAGAGACGGTTGCAATT
5252528 GGATACATTGGGAAAGTATCAAGGGACGCCTAAAATGAATAAAATGACC
66 GGATACATTGGGAAAGTATCAAGGGACGCCTAAAATGAATAAAATGACC
5252577 ATGAAAATAA
Statistics
Matches: 114, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
114 114 1.00
ACGTcount: A:0.38, C:0.16, G:0.26, T:0.20
Consensus pattern (114 bp):
TTCGAGGAACCGGAGAGCTACTGTTAACGACTCTAACTGTAAAAGGAGAAGAGACGGTTGCAATT
GGATACATTGGGAAAGTATCAAGGGACGCCTAAAATGAATAAAATGACC
Found at i:5255366 original size:25 final size:25
Alignment explanation
Indices: 5255333--5255391 Score: 109
Period size: 25 Copynumber: 2.4 Consensus size: 25
5255323 TTTTCAACTT
*
5255333 TTATTTTTTATCATTTTAATTATAA
1 TTATATTTTATCATTTTAATTATAA
5255358 TTATATTTTATCATTTTAATTATAA
1 TTATATTTTATCATTTTAATTATAA
5255383 TTATATTTT
1 TTATATTTT
5255392 CATTATCTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.64
Consensus pattern (25 bp):
TTATATTTTATCATTTTAATTATAA
Found at i:5255367 original size:17 final size:19
Alignment explanation
Indices: 5255355--5255397 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 19
5255345 ATTTTAATTA
*
5255355 TAATTATATTTTATCATTT
1 TAATTATATATTATCATTT
5255374 TAATTATA-ATTAT-ATTT
1 TAATTATATATTATCATTT
*
5255391 TCATTAT
1 TAATTAT
5255398 CTTATTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 10 0.45
18 4 0.18
19 8 0.36
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (19 bp):
TAATTATATATTATCATTT
Found at i:5255404 original size:25 final size:25
Alignment explanation
Indices: 5255333--5255405 Score: 94
Period size: 25 Copynumber: 2.9 Consensus size: 25
5255323 TTTTCAACTT
* *
5255333 TTATTTTTTATCATTTTAATTATAA
1 TTATATTTTATCATCTTAATTATAA
*
5255358 TTATATTTTATCATTTTAATTATAA
1 TTATATTTTATCATCTTAATTATAA
*
5255383 TTATATTTTCATTATCTT-ATTAT
1 TTATATTTT-ATCATCTTAATTAT
5255406 TTCAAATTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
25 38 0.86
26 6 0.14
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (25 bp):
TTATATTTTATCATCTTAATTATAA
Found at i:5263737 original size:47 final size:40
Alignment explanation
Indices: 5263684--5263788 Score: 111
Period size: 40 Copynumber: 2.5 Consensus size: 40
5263674 GTTAGATTTA
5263684 AAAAAAATATTAAATAAATCAAAGAGGGAGAAAAATAAAATAAAAAT
1 AAAAAAATATTAAATAAATC-AA-A--G-G-AAAA-AAAATAAAAAT
** * *
5263731 AAAAAAATAAAAAATAAATCAAAGGAAAAAAGATAAAGAT
1 AAAAAAATATTAAATAAATCAAAGGAAAAAAAATAAAAAT
5263771 AAAAAAATATTAAATAAA
1 AAAAAAATATTAAATAAA
5263789 AAAAATTAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
40 25 0.48
41 4 0.08
42 1 0.02
43 1 0.02
45 1 0.02
46 2 0.04
47 18 0.35
ACGTcount: A:0.73, C:0.02, G:0.09, T:0.16
Consensus pattern (40 bp):
AAAAAAATATTAAATAAATCAAAGGAAAAAAAATAAAAAT
Found at i:5263739 original size:14 final size:14
Alignment explanation
Indices: 5263720--5263910 Score: 56
Period size: 14 Copynumber: 13.2 Consensus size: 14
5263710 GGAGAAAAAT
5263720 AAAATAAAAATAAA
1 AAAATAAAAATAAA
5263734 AAAAT--AAA-AAA
1 AAAATAAAAATAAA
* * **
5263745 TAAATCAAAGGAAA
1 AAAATAAAAATAAA
*
5263759 AAAGATAAAGATAAA
1 AAA-ATAAAAATAAA
*
5263774 AAAATATTAAATAAAA
1 AAAATA-AAAAT-AAA
**
5263790 AAAATTAAATTTTAAA
1 AAAA-TAAA-AATAAA
*
5263806 AGTAAT-AAAATAATA
1 A-AAATAAAAATAA-A
* * *
5263821 ATAATAATAAGTAAGT
1 AAAATAA-AAATAA-A
5263837 AAAAT-AAAATAAA
1 AAAATAAAAATAAA
*
5263850 ATAAA-ACAAATAAA
1 A-AAATAAAAATAAA
5263864 AAAATACTAAAATTAAA
1 AAAATA--AAAA-TAAA
*
5263881 AAGAA-AAAAAT-GA
1 AA-AATAAAAATAAA
* *
5263894 ATAACAAAAATAAA
1 AAAATAAAAATAAA
5263908 AAA
1 AAA
5263911 TGCTAAAATT
Statistics
Matches: 129, Mismatches: 27, Indels: 42
0.65 0.14 0.21
Matches are distributed among these distances:
11 7 0.05
12 5 0.04
13 14 0.11
14 41 0.32
15 23 0.18
16 25 0.19
17 12 0.09
18 2 0.02
ACGTcount: A:0.74, C:0.02, G:0.05, T:0.19
Consensus pattern (14 bp):
AAAATAAAAATAAA
Found at i:5263787 original size:15 final size:14
Alignment explanation
Indices: 5263714--5263799 Score: 57
Period size: 15 Copynumber: 5.8 Consensus size: 14
5263704 AAAGAGGGAG
*
5263714 AAAAATAAAATAAA
1 AAAAATTAAATAAA
*
5263728 AATAAA-AAAATAAAA
1 AA-AAATTAAAT-AAA
* *
5263743 AATAAATCAAAGGAAA
1 AA-AAATTAAA-TAAA
* *
5263759 AAAGATAAAGATAAA
1 AAAAATTAA-ATAAA
5263774 AAAATATTAAATAAA
1 AAAA-ATTAAATAAA
5263789 AAAAATTAAAT
1 AAAAATTAAAT
5263800 TTTAAAAGTA
Statistics
Matches: 59, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
14 14 0.24
15 32 0.54
16 13 0.22
ACGTcount: A:0.77, C:0.01, G:0.05, T:0.17
Consensus pattern (14 bp):
AAAAATTAAATAAA
Found at i:5263865 original size:10 final size:9
Alignment explanation
Indices: 5263837--5263910 Score: 53
Period size: 9 Copynumber: 8.2 Consensus size: 9
5263827 ATAAGTAAGT
5263837 AAAATAAAA
1 AAAATAAAA
5263846 TAAAATAAAA
1 -AAAATAAAA
*
5263856 CAAAT-AAA
1 AAAATAAAA
**
5263864 AAAATACTA
1 AAAATAAAA
*
5263873 AAATTAAAA
1 AAAATAAAA
5263882 AGAAA-AAAA
1 A-AAATAAAA
** *
5263891 TGAATAACA
1 AAAATAAAA
5263900 AAAATAAAA
1 AAAATAAAA
5263909 AA
1 AA
5263911 TGCTAAAATT
Statistics
Matches: 47, Mismatches: 14, Indels: 7
0.69 0.21 0.10
Matches are distributed among these distances:
8 9 0.19
9 27 0.57
10 11 0.23
ACGTcount: A:0.78, C:0.04, G:0.03, T:0.15
Consensus pattern (9 bp):
AAAATAAAA
Found at i:5263920 original size:43 final size:44
Alignment explanation
Indices: 5263849--5263948 Score: 141
Period size: 43 Copynumber: 2.3 Consensus size: 44
5263839 AATAAAATAA
5263849 AATAA-AACAAATAAAAAAATACTAAAATTAAAAAGAAAAAAATG
1 AATAACAA-AAATAAAAAAATACTAAAATTAAAAAGAAAAAAATG
* * *
5263893 AATAACAAAAAT-AAAAAATGCTAAAATTTAAAAGGAAAAAATG
1 AATAACAAAAATAAAAAAATACTAAAATTAAAAAGAAAAAAATG
5263936 AATAACTAAAAAT
1 AATAAC-AAAAAT
5263949 TTAAAGGACC
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
43 34 0.67
44 15 0.29
45 2 0.04
ACGTcount: A:0.71, C:0.05, G:0.06, T:0.18
Consensus pattern (44 bp):
AATAACAAAAATAAAAAAATACTAAAATTAAAAAGAAAAAAATG
Found at i:5264606 original size:7 final size:7
Alignment explanation
Indices: 5264596--5264630 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
5264586 TCTGAACAAT
5264596 GAAATTA
1 GAAATTA
5264603 GAAATTA
1 GAAATTA
5264610 GAAATTA
1 GAAATTA
5264617 GAAATTA
1 GAAATTA
5264624 GAAATTA
1 GAAATTA
5264631 TTTTTTTATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29
Consensus pattern (7 bp):
GAAATTA
Found at i:5265985 original size:2 final size:2
Alignment explanation
Indices: 5265978--5266010 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
5265968 CATTAAGTAT
5265978 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
5266011 TGTAGACACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:5266065 original size:3 final size:3
Alignment explanation
Indices: 5266057--5266086 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
5266047 TATTTATGAT
*
5266057 TTA TTA TTA TTA TTA TTA ATA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
5266087 ATTTTTTCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:5270048 original size:17 final size:18
Alignment explanation
Indices: 5270009--5270055 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
5269999 TGTTTCTGAG
5270009 GGAATTGAAATCTGTGAA
1 GGAATTGAAATCTGTGAA
*
5270027 GGAATTGAAATCTGT-CA
1 GGAATTGAAATCTGTGAA
*
5270044 GGAATTGGAATC
1 GGAATTGAAATC
5270056 CAATTCTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 12 0.44
18 15 0.56
ACGTcount: A:0.36, C:0.09, G:0.28, T:0.28
Consensus pattern (18 bp):
GGAATTGAAATCTGTGAA
Found at i:5270994 original size:250 final size:252
Alignment explanation
Indices: 5270416--5271005 Score: 808
Period size: 253 Copynumber: 2.3 Consensus size: 252
5270406 CATCCGAGAC
5270416 CCGACCCGACCAAAATAAAGTTTCACCCG----GACCCGAATATATGAATTAGAAACCCGACCCG
1 CCGACCCGACCAAAATAAAGTTTCACCCGACCCGACCCGAATATATGAATTAGAAACCCGACCCG
** * * *
5270477 ACCCGAAATAATAAAAAAATTATTTTTATTCAATAAAAACAGTGACTTAATTGGAAAATATATAT
66 ACCCGAAATAATAAAAAAA-TA-TAATATTCAATAAAAACAATGACTTAATTGAAAAAAATATAT
*
5270542 AGAGAGAGGGGTATTATTGTAATTATTCCTAAATATATAAGGTAAAATTATATATTTTTTGGGTC
129 AGAGAGAGGGGTATTATTGTAATTATTCCTAAATATATAAGGTAAAATTATATATTATTT--GTC
* * *
5270607 GGGTCTGGTATTTTTCACCCTAAACCTGAACCCGACCCGAATATAACACTTAAAAAAATGAT
192 GGGTCGGGTATTTTTCACCCTAAACCCGAACCCGACCCAAATATAACACTTAAAAAAA-GAT
* *** *
5270669 CCGACCCGACCAAAATAAAGTTTCACCTGACCCGACCCGAATATATGAATTAGAAATTTGATCCG
1 CCGACCCGACCAAAATAAAGTTTCACCCGACCCGACCCGAATATATGAATTAGAAACCCGACCCG
*
5270734 ACCCGAAATAATAATAAAAA-A-AATATTCAATAAAAATAATGACTTAATTGAAAAAAAT-TATA
66 ACCCGAAATAATAA-AAAAATATAATATTCAATAAAAACAATGACTTAATTGAAAAAAATATATA
* *
5270796 TATAGAGGGGTATTATTGTAATTATTCCTAAATATATAAGGTAAAATTATATA-TATTT-TCGGG
130 GAGAGAGGGGTATTATTGTAATTATTCCTAAATATATAAGGTAAAATTATATATTATTTGTCGGG
* *
5270859 TCGGGTATTTTTCATCCTAAACCCGAACTCGACCCGACCCAAATATCACACTT-AAAAAA-AT
195 TCGGGTATTTTTCACCCTAAACCCG-A----ACCCGACCCAAATATAACACTTAAAAAAAGAT
*
5270920 -CGACCCGACCAAAATAAAGTTTCACCCGACCCGACCCAAATATATGAATTAGAAACCCGACCCG
1 CCGACCCGACCAAAATAAAGTTTCACCCGACCCGACCCGAATATATGAATTAGAAACCCGACCCG
*
5270984 ACCTGAAATAATAAAAAAATAT
66 ACCCGAAATAATAAAAAAATAT
5271006 TTTTATTCAA
Statistics
Matches: 299, Mismatches: 26, Indels: 26
0.85 0.07 0.07
Matches are distributed among these distances:
249 32 0.11
250 73 0.24
251 2 0.01
252 4 0.01
253 89 0.30
254 51 0.17
256 1 0.00
257 42 0.14
258 5 0.02
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.27
Consensus pattern (252 bp):
CCGACCCGACCAAAATAAAGTTTCACCCGACCCGACCCGAATATATGAATTAGAAACCCGACCCG
ACCCGAAATAATAAAAAAATATAATATTCAATAAAAACAATGACTTAATTGAAAAAAATATATAG
AGAGAGGGGTATTATTGTAATTATTCCTAAATATATAAGGTAAAATTATATATTATTTGTCGGGT
CGGGTATTTTTCACCCTAAACCCGAACCCGACCCAAATATAACACTTAAAAAAAGAT
Found at i:5272835 original size:107 final size:106
Alignment explanation
Indices: 5272647--5272911 Score: 395
Period size: 107 Copynumber: 2.5 Consensus size: 106
5272637 GACGAAAGGG
*
5272647 CTTCCCAGTTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAGCACAAGC
1 CTTCCCAGTTTCAGAGCCAATTTCAACTTCACAGCAAAGGATATTGGACTCGAGACAGCACAAGC
5272712 TCAACTTCACAATGAAGGGGCGGCTGACTGTCAACAAATAAA
66 TCAACTTCACAATGAAGGGGCGGCTGACTGTCAACAAAT-AA
* * *
5272754 CTTCCCAGTTTCATAGCCAATTTCAACTTCGCAGCAAATGATATTGGACTCGAGACAGCACAAGC
1 CTTCCCAGTTTCAGAGCCAATTTCAACTTCACAGCAAAGGATATTGGACTCGAGACAGCACAAGC
* *
5272819 TCAACTTCACAGTGAAGGGGCGGTTGACTGTCAACAAATAA
66 TCAACTTCACAATGAAGGGGCGGCTGACTGTCAACAAATAA
* * * * ** **
5272860 TTTCCCAATTCCAGAGCCAATTTTAACTTCATGGCGGAGGATATTGGACTCG
1 CTTCCCAGTTTCAGAGCCAATTTCAACTTCACAGCAAAGGATATTGGACTCG
5272912 GAACAATACA
Statistics
Matches: 141, Mismatches: 17, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
106 43 0.30
107 98 0.70
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (106 bp):
CTTCCCAGTTTCAGAGCCAATTTCAACTTCACAGCAAAGGATATTGGACTCGAGACAGCACAAGC
TCAACTTCACAATGAAGGGGCGGCTGACTGTCAACAAATAA
Found at i:5273342 original size:120 final size:120
Alignment explanation
Indices: 5273178--5273409 Score: 385
Period size: 120 Copynumber: 1.9 Consensus size: 120
5273168 GCAACTTACA
* *
5273178 TTGGATTTCAACTTCACAACGAATGATATCCAATTCAAGGCTCAACTTCAC-AACGAAGGGGCCA
1 TTGGATTTCAACTTCACAACAAATGATATCCAAGTCAAGGCTCAACTTCACGAA-GAAGGGGCCA
* *
5273242 TCCACGGTTTCAACTTCACGACGAAGGGAATCGTGCTCACCAGCAACAATACAAGC
65 TCCACGGTTTCAACTTCACGACGAAGGGAATCGTACCCACCAGCAACAATACAAGC
* * *
5273298 TTGGATTTCAACTTCACTACAAATGATATTCAAGTCAATGCTCAACTTCACGAAGAAGGGGCCAT
1 TTGGATTTCAACTTCACAACAAATGATATCCAAGTCAAGGCTCAACTTCACGAAGAAGGGGCCAT
5273363 CCACGGTTTCAACTTCACGACGAAGGGAATCGTACCCACCAGCAACA
66 CCACGGTTTCAACTTCACGACGAAGGGAATCGTACCCACCAGCAACA
5273410 TTCATCTTCA
Statistics
Matches: 104, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
120 102 0.98
121 2 0.02
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (120 bp):
TTGGATTTCAACTTCACAACAAATGATATCCAAGTCAAGGCTCAACTTCACGAAGAAGGGGCCAT
CCACGGTTTCAACTTCACGACGAAGGGAATCGTACCCACCAGCAACAATACAAGC
Found at i:5273535 original size:32 final size:35
Alignment explanation
Indices: 5273504--5273776 Score: 164
Period size: 36 Copynumber: 7.7 Consensus size: 35
5273494 TACTCAAATT
*
5273504 TCTCTTGAGACAGTTTCTCTTGAAAGAAAATTTGTC
1 TCTCTTGAGACAGTTTCCCTTGAAAGAAAA-TTGTC
* *
5273540 TCTCTTGAGACAGTTTCCCTTGAAACAAATTTTGTC
1 TCTCTTGAGACAGTTTCCCTTGAAAGAAA-ATTGTC
* *
5273576 TCTCTTGAGACAATTTTCCCTTGAAACAAAA-----
1 TCTCTTGAGAC-AGTTTCCCTTGAAAGAAAATTGTC
* ** * ** *
5273607 TCT-TT-AAATTTGTTTTCCTTGAAACTAATTTCGTC
1 TCTCTTGAGA-CAGTTTCCCTTGAAAGAAAATT-GTC
** ** ** *
5273642 TCTCTTGAGACAGTTTCTTTTGGAACTAAGTTTTATC
1 TCTCTTGAGACAGTTTCCCTT-GAAAGAA-AATTGTC
* * * *
5273679 TTTCTTGAGGCAGTTTCCCTTGAAACAAATTTTGTC
1 TCTCTTGAGACAGTTTCCCTTGAAAGAAA-ATTGTC
* * *
5273715 TCTCTTGAGATAGTTTCCCTTGAAACAAAGTTTTGTC
1 TCTCTTGAGACAGTTTCCCTTGAAAGAAA--ATTGTC
*
5273752 TCTCTTGAGACAGTTTCTCTTGAAA
1 TCTCTTGAGACAGTTTCCCTTGAAA
5273777 CACAAGAAAC
Statistics
Matches: 186, Mismatches: 36, Indels: 29
0.74 0.14 0.12
Matches are distributed among these distances:
29 16 0.09
30 2 0.01
31 3 0.02
35 3 0.02
36 87 0.47
37 72 0.39
38 3 0.02
ACGTcount: A:0.25, C:0.19, G:0.14, T:0.41
Consensus pattern (35 bp):
TCTCTTGAGACAGTTTCCCTTGAAAGAAAATTGTC
Found at i:5273604 original size:16 final size:17
Alignment explanation
Indices: 5273553--5273604 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 17
5273543 CTTGAGACAG
5273553 TTTCCCTTGAAACAAATT
1 TTTCCCTTGAAAC-AATT
*
5273571 TTGTCTCTCTTGAGACAA-T
1 TT-TC-C-CTTGAAACAATT
5273590 TTTCCCTTGAAACAA
1 TTTCCCTTGAAACAA
5273605 AATCTTTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
16 9 0.31
17 1 0.03
18 4 0.14
19 5 0.17
20 3 0.10
21 7 0.24
ACGTcount: A:0.29, C:0.23, G:0.10, T:0.38
Consensus pattern (17 bp):
TTTCCCTTGAAACAATT
Found at i:5273686 original size:37 final size:36
Alignment explanation
Indices: 5273618--5273778 Score: 189
Period size: 37 Copynumber: 4.4 Consensus size: 36
5273608 CTTTAAATTT
* *
5273618 GTTTTCCTTGAAACTAA-TTTCGTCTCTCTTGAGACA
1 GTTTCCCTTGAAAC-AAGTTTTGTCTCTCTTGAGACA
** * * * *
5273654 GTTTCTTTTGGAACTAAGTTTTATCTTTCTTGAGGCA
1 GTTTCCCTTGAAAC-AAGTTTTGTCTCTCTTGAGACA
* *
5273691 GTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGATA
1 GTTTCCCTTGAAACAAGTTTTGTCTCTCTTGAGACA
5273727 GTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACA
1 GTTTCCCTTGAAAC-AAGTTTTGTCTCTCTTGAGACA
*
5273764 GTTTCTCTTGAAACA
1 GTTTCCCTTGAAACA
5273779 CAAGAAACCC
Statistics
Matches: 104, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
36 45 0.43
37 59 0.57
ACGTcount: A:0.23, C:0.19, G:0.16, T:0.42
Consensus pattern (36 bp):
GTTTCCCTTGAAACAAGTTTTGTCTCTCTTGAGACA
Found at i:5273704 original size:73 final size:73
Alignment explanation
Indices: 5273618--5273778 Score: 214
Period size: 73 Copynumber: 2.2 Consensus size: 73
5273608 CTTTAAATTT
* * ** * * *
5273618 GTTTTCCTTGAAACTAATTTCGTCTCTCTTGAGACAGTTTCTTTTGGAACTAAGTTTTATCTTTC
1 GTTTCCCTTGAAACAAATTTCGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAGTTTTATCTCTC
*
5273683 TTGAGGCA
66 TTGAGACA
* * *
5273691 GTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAGTTTTGTCTCTC
1 GTTTCCCTTGAAACAAATTTCGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAGTTTTATCTCTC
5273756 TTGAGACA
66 TTGAGACA
*
5273764 GTTTCTCTTGAAACA
1 GTTTCCCTTGAAACA
5273779 CAAGAAACCC
Statistics
Matches: 76, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
73 76 1.00
ACGTcount: A:0.23, C:0.19, G:0.16, T:0.42
Consensus pattern (73 bp):
GTTTCCCTTGAAACAAATTTCGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAGTTTTATCTCTC
TTGAGACA
Found at i:5274185 original size:12 final size:12
Alignment explanation
Indices: 5274170--5274215 Score: 56
Period size: 12 Copynumber: 3.6 Consensus size: 12
5274160 TATTTATTTA
*
5274170 TTTATGATTAAT
1 TTTATTATTAAT
5274182 TTTATTATTATTAT
1 TTTATTATTA--AT
5274196 TATTATTATTAAT
1 T-TTATTATTAAT
5274209 TTTATTA
1 TTTATTA
5274216 ATTTTTTCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
12 15 0.50
13 3 0.10
14 3 0.10
15 9 0.30
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (12 bp):
TTTATTATTAAT
Found at i:5274189 original size:15 final size:15
Alignment explanation
Indices: 5274166--5274215 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
5274156 AAATTATTTA
*
5274166 TTTATTTATGATTAAT
1 TTTA-TTATTATTAAT
5274182 TTTATTATTATT-A-
1 TTTATTATTATTAAT
5274195 -TTATTATTATTAAT
1 TTTATTATTATTAAT
5274209 TTTATTA
1 TTTATTA
5274216 ATTTTTTCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
12 11 0.37
13 1 0.03
14 1 0.03
15 13 0.43
16 4 0.13
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (15 bp):
TTTATTATTATTAAT
Found at i:5274191 original size:3 final size:3
Alignment explanation
Indices: 5274183--5274215 Score: 50
Period size: 3 Copynumber: 11.0 Consensus size: 3
5274173 ATGATTAATT
5274183 TTA TTA TTA TTA TTA TTA TTA TTAA TT- TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA
5274216 ATTTTTTCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 23 0.82
4 3 0.11
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:5274216 original size:9 final size:9
Alignment explanation
Indices: 5274162--5274220 Score: 59
Period size: 9 Copynumber: 6.3 Consensus size: 9
5274152 TAAAAAATTA
*
5274162 TTTATTTAT
1 TTTATTAAT
5274171 TTATGATTAAT
1 TT-T-ATTAAT
5274182 TTTATT-AT
1 TTTATTAAT
5274190 TATTATT-AT
1 T-TTATTAAT
5274199 TATTATTAAT
1 T-TTATTAAT
5274209 TTTATTAAT
1 TTTATTAAT
5274218 TTT
1 TTT
5274221 TTCTTTTTCC
Statistics
Matches: 45, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
8 3 0.07
9 30 0.67
10 5 0.11
11 7 0.16
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.68
Consensus pattern (9 bp):
TTTATTAAT
Found at i:5278124 original size:47 final size:45
Alignment explanation
Indices: 5278024--5278150 Score: 157
Period size: 47 Copynumber: 2.8 Consensus size: 45
5278014 GTAACCATGC
* * **
5278024 AAATAAGCTTATGAGCTTACGGAA-ATAATGACAAGTATATAGGAA
1 AAATAAGCTTACGAGCTTATGGAATA-AATGGTAAGTATATAGGAA
* * *
5278069 AAATAAGCTTACGAGCTTATGGAATTTAAATGGTAAGTATTTTGGTA
1 AAATAAGCTTACGAGCTTATGGAA--TAAATGGTAAGTATATAGGAA
5278116 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAG
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAG
5278151 AGATTTTATA
Statistics
Matches: 72, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
45 33 0.46
47 38 0.53
48 1 0.01
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (45 bp):
AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATAGGAA
Found at i:5278864 original size:2 final size:2
Alignment explanation
Indices: 5278857--5278916 Score: 88
Period size: 2 Copynumber: 31.0 Consensus size: 2
5278847 GGGTATTACA
*
5278857 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
5278899 AT TT AT A- AT AT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
5278917 TTCATATAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
1 2 0.04
2 50 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:5280202 original size:31 final size:33
Alignment explanation
Indices: 5280154--5280232 Score: 90
Period size: 34 Copynumber: 2.4 Consensus size: 33
5280144 TTTAAATAGT
* *
5280154 TATTATATTTTATATT-AAT-ATATTTATGTAAA
1 TATTAT-TTTTTTATTAAATAATATTTATATAAA
*
5280186 TATTATTTTTTTATTAAAATAATATTTATATAAT
1 TATTATTTTTTTATT-AAATAATATTTATATAAA
*
5280220 TATTATTTATTTA
1 TATTATTTTTTTA
5280233 GAATTATTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
31 8 0.20
32 6 0.15
33 3 0.08
34 23 0.57
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.59
Consensus pattern (33 bp):
TATTATTTTTTTATTAAATAATATTTATATAAA
Found at i:5280224 original size:34 final size:31
Alignment explanation
Indices: 5280144--5280232 Score: 88
Period size: 34 Copynumber: 2.7 Consensus size: 31
5280134 TAAGTATTTT
* * *
5280144 TTTAAATAGTTATTATATTTTATATTAATATA
1 TTTATATAATTATTAT-TTTTTTATTAATATA
* *
5280176 TTTATGTAAATATTATTTTTTTATTAAAATAATA
1 TTTATATAATTATTATTTTTTTATT--AAT-ATA
*
5280210 TTTATATAATTATTATTTATTTA
1 TTTATATAATTATTATTTTTTTA
5280233 GAATTATTAA
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
31 8 0.17
32 12 0.26
33 3 0.07
34 23 0.50
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.58
Consensus pattern (31 bp):
TTTATATAATTATTATTTTTTTATTAATATA
Found at i:5280262 original size:51 final size:49
Alignment explanation
Indices: 5280155--5280262 Score: 112
Period size: 51 Copynumber: 2.2 Consensus size: 49
5280145 TTAAATAGTT
* *
5280155 ATTATATTTTATATTAATATATTTATGTAAATATTATTTTTTTATTAAA
1 ATTATATTTTATATTAATATATTTATGTAAATATTAATTTTTTATGAAA
* * **
5280204 ATAATA-TTTATA-TAATTATTATTTATTTAGAATTATTAATTTTTTATGCTA
1 ATTATATTTTATATTAA-TA-TATTTATGTA-AA-TATTAATTTTTTATGAAA
5280255 ATTATATT
1 ATTATATT
5280263 GTTTTGTCTA
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
47 3 0.06
48 8 0.17
49 14 0.30
50 2 0.04
51 19 0.40
52 1 0.02
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.58
Consensus pattern (49 bp):
ATTATATTTTATATTAATATATTTATGTAAATATTAATTTTTTATGAAA
Found at i:5281985 original size:21 final size:21
Alignment explanation
Indices: 5281955--5282002 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
5281945 GTAGGGGTAC
* *
5281955 ATGCCCAGCCCTCCACTTCAT
1 ATGCCAAGCCCACCACTTCAT
* *
5281976 ATGCCAAGCCCACCAGTTTAT
1 ATGCCAAGCCCACCACTTCAT
5281997 ATGCCA
1 ATGCCA
5282003 TCTCCGCAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.25, C:0.40, G:0.12, T:0.23
Consensus pattern (21 bp):
ATGCCAAGCCCACCACTTCAT
Found at i:5282032 original size:21 final size:21
Alignment explanation
Indices: 5282006--5282099 Score: 129
Period size: 21 Copynumber: 4.5 Consensus size: 21
5281996 TATGCCATCT
5282006 CCGCAGGGTTACATTCCGAGC
1 CCGCAGGGTTACATTCCGAGC
5282027 CCGCAGGGTTACATTCCGAGC
1 CCGCAGGGTTACATTCCGAGC
* *
5282048 CCGCAAGGTTACATTCCTAGC
1 CCGCAGGGTTACATTCCGAGC
*
5282069 CCGCCA-GGTTACA-TGCGTAGC
1 CCG-CAGGGTTACATTCCG-AGC
5282090 CCGCAGGGTT
1 CCGCAGGGTT
5282100 TTATACCATA
Statistics
Matches: 66, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
20 4 0.06
21 60 0.91
22 2 0.03
ACGTcount: A:0.19, C:0.33, G:0.28, T:0.20
Consensus pattern (21 bp):
CCGCAGGGTTACATTCCGAGC
Found at i:5282650 original size:28 final size:28
Alignment explanation
Indices: 5282618--5282712 Score: 109
Period size: 28 Copynumber: 3.2 Consensus size: 28
5282608 GATAAATGTT
*
5282618 TTTAAAATACAAATTATATTATTCGAAA
1 TTTAAAATAAAAATTATATTATTCGAAA
5282646 TTTAAAATAAAAATAAAAATAATATTATTCGAAA
1 TTTAAAATAAAAAT-----T-ATATTATTCGAAA
* *
5282680 TTTAAAATATAAATTATAGTATTCGAAA
1 TTTAAAATAAAAATTATATTATTCGAAA
5282708 TTTAA
1 TTTAA
5282713 CATTAAATTT
Statistics
Matches: 58, Mismatches: 3, Indels: 12
0.79 0.04 0.16
Matches are distributed among these distances:
28 30 0.52
29 1 0.02
33 1 0.02
34 26 0.45
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (28 bp):
TTTAAAATAAAAATTATATTATTCGAAA
Found at i:5282671 original size:34 final size:34
Alignment explanation
Indices: 5282621--5282693 Score: 119
Period size: 34 Copynumber: 2.1 Consensus size: 34
5282611 AAATGTTTTT
* *
5282621 AAAATACAAATTATATTATTCGAAATTTAAAATA
1 AAAATAAAAATAATATTATTCGAAATTTAAAATA
5282655 AAAATAAAAATAATATTATTCGAAATTTAAAATA
1 AAAATAAAAATAATATTATTCGAAATTTAAAATA
*
5282689 TAAAT
1 AAAAT
5282694 TATAGTATTC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.59, C:0.04, G:0.03, T:0.34
Consensus pattern (34 bp):
AAAATAAAAATAATATTATTCGAAATTTAAAATA
Found at i:5282719 original size:34 final size:33
Alignment explanation
Indices: 5282619--5282719 Score: 104
Period size: 34 Copynumber: 3.2 Consensus size: 33
5282609 ATAAATGTTT
*
5282619 TTAAAATACAAATTATATTATTCGAAATTTAAAA
1 TTAAAATAAAAATTATATTATTCGAAATTT-AAA
* *
5282653 TAAAAATAAAAATAATATTATTCGAAA--T---
1 TTAAAATAAAAATTATATTATTCGAAATTTAAA
* *
5282681 TTAAAATATAAATTATAGTATTCGAAATTTAACA
1 TTAAAATAAAAATTATATTATTCGAAATTTAA-A
5282715 TTAAA
1 TTAAA
5282720 TTTCAACTTA
Statistics
Matches: 54, Mismatches: 7, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
28 23 0.43
30 1 0.02
32 1 0.02
34 29 0.54
ACGTcount: A:0.54, C:0.05, G:0.04, T:0.37
Consensus pattern (33 bp):
TTAAAATAAAAATTATATTATTCGAAATTTAAA
Found at i:5286586 original size:272 final size:273
Alignment explanation
Indices: 5286110--5286657 Score: 983
Period size: 272 Copynumber: 2.0 Consensus size: 273
5286100 TATATTGTCG
*
5286110 AAACCCTAGTTTTTTTATTATTACAGTAATCGCAAATAGGTTTTTTATGTGTTGTTTGGGGTTTT
1 AAACCCTAGTTTTTTTATTATTACAGTAATCGCAAATAGGTTTTTTATATGTTGTTTGGGGTTTT
* *
5286175 GGAGTAAAGAAGCATTTGGGGCCGATTATAGGTAGAAAGTGATATTCAAAGTAAAATATAAATGT
66 GGAGTAAAGAAGCATTTGGGACCGATTACAGGTAGAAAGTGATATTCAAAGTAAAATATAAATGT
5286240 TGATACTTTTATTAAATATTATAGGCAGAAAATGATATTATAGGTTGTATAAATGTGCCAACACA
131 TGATACTTTTATTAAATATTATAGGCAGAAAATGATATTATAGGTTGTATAAATGTGCCAACACA
5286305 TTTTGTAGTGGCCATTCAAATTCTTTTGAAGAAAACCGTTTTACCACAAGAGTAGTTATCTATAT
196 TTTTGTAGTGGCCATTCAAATTCTTTTGAAGAAAACCGTTTTACCACAAGAGTAGTTATCTATAT
5286370 TTGTATATTGAAT
261 TTGTATATTGAAT
5286383 AAACCCTAG-TTTTTTATTATTACAGTAATCGCAAATATGG-TTTTTATATGTTGTTTGGGGTTT
1 AAACCCTAGTTTTTTTATTATTACAGTAATCGCAAATA-GGTTTTTTATATGTTGTTTGGGGTTT
* * *
5286446 TGGTGTAAAGAAGCATTTGTGACCGATTACAGGTAGAAAGTGATATTCAAGGTAAAATATAAATG
65 TGGAGTAAAGAAGCATTTGGGACCGATTACAGGTAGAAAGTGATATTCAAAGTAAAATATAAATG
* * *
5286511 TTGATACTTTTATTAAATATTATAGGTAGAAAATGATATTATAGGTTGTATAAATGTGTCGACAC
130 TTGATACTTTTATTAAATATTATAGGCAGAAAATGATATTATAGGTTGTATAAATGTGCCAACAC
*
5286576 ATTTTGTAGTGGCCATTCAAATTCTTTTGAAGAAAACCGTTTTACCACAATAGTAGTTATCTATA
195 ATTTTGTAGTGGCCATTCAAATTCTTTTGAAGAAAACCGTTTTACCACAAGAGTAGTTATCTATA
5286641 TTTGTATATTGAAT
260 TTTGTATATTGAAT
5286655 AAA
1 AAA
5286658 GTGTATGTAA
Statistics
Matches: 264, Mismatches: 10, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
272 253 0.96
273 11 0.04
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (273 bp):
AAACCCTAGTTTTTTTATTATTACAGTAATCGCAAATAGGTTTTTTATATGTTGTTTGGGGTTTT
GGAGTAAAGAAGCATTTGGGACCGATTACAGGTAGAAAGTGATATTCAAAGTAAAATATAAATGT
TGATACTTTTATTAAATATTATAGGCAGAAAATGATATTATAGGTTGTATAAATGTGCCAACACA
TTTTGTAGTGGCCATTCAAATTCTTTTGAAGAAAACCGTTTTACCACAAGAGTAGTTATCTATAT
TTGTATATTGAAT
Found at i:5286887 original size:19 final size:19
Alignment explanation
Indices: 5286863--5286900 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
5286853 TGGATTAAAG
5286863 TATTTAAGAACTTTAAATT
1 TATTTAAGAACTTTAAATT
5286882 TATTTAAGAACTTTAAATT
1 TATTTAAGAACTTTAAATT
5286901 GATGACAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.47
Consensus pattern (19 bp):
TATTTAAGAACTTTAAATT
Found at i:5288336 original size:21 final size:21
Alignment explanation
Indices: 5288312--5288397 Score: 145
Period size: 21 Copynumber: 4.1 Consensus size: 21
5288302 AAGACAATCA
5288312 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
*
5288333 AGAGTCGAAGAGAAACTTAAG
1 AGAGTCGAAGAGAAACTTGAG
5288354 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
5288375 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
5288396 AG
1 AG
5288398 GCATAAGGGG
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 61 1.00
ACGTcount: A:0.43, C:0.10, G:0.31, T:0.15
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:5288462 original size:25 final size:25
Alignment explanation
Indices: 5288434--5288488 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
5288424 TAGATGGAGT
*
5288434 GGTGAAAGAAGTAGAGGTGTTGAGG
1 GGTGAAAGAAGTAGAGGTGTTAAGG
*
5288459 GGTGAAAGAAGTTGAGGTGTTAAGG
1 GGTGAAAGAAGTAGAGGTGTTAAGG
5288484 GGTGA
1 GGTGA
5288489 TCTTAAGATG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.31, C:0.00, G:0.47, T:0.22
Consensus pattern (25 bp):
GGTGAAAGAAGTAGAGGTGTTAAGG
Found at i:5291062 original size:401 final size:402
Alignment explanation
Indices: 5290564--5292082 Score: 2564
Period size: 401 Copynumber: 3.8 Consensus size: 402
5290554 ACATATGCAT
* *
5290564 CCATAAGTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACC-AGTTTTATGAT
1 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGA-TTTTATGAG
*
5290628 AGAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAACG
65 AGAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATG
* * *
5290693 AATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCTCAGAAACA
130 GATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAAAAACA
5290758 TCGAAACCCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTT
195 TCGAAACCCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTT
* *
5290823 TATGAAAGAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCC
260 TATGAGAGAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCAATACTTTTGGTCC
* *
5290888 AGAATGGATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTTAAAAAGTGTCGACCCCA
325 AGAATGGATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCA
*
5290953 GAAACATCGAAAC
390 GAAATATCGAAAC
* *
5290966 CTATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTAT-AATATATCGATTTTATGAGA
1 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
* * *
5291030 GAATAGGTCTACAACATGCATCGACACTTTTTTAATTTTGTATCGATACTTTTGGTCCATAATGG
66 GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGG
*
5291095 ATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAGAAACAT
131 ATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAAAAACAT
* *
5291160 CGAAACCCATAATTATAATGTAATAGGTAAATTTACAATGTAATCTGTATAAATATACCGATTTT
196 CGAAACCCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTT
*
5291225 ATGAGAGAATAGGTCTACAACATGTATCGACACTTTTTTTAATTTTGTGTCTATACTTTTGGTCC
261 ATGAGAGAATAGGTCTACAACATGTATCGACAC-TTTTTTAATTTTGTGTCAATACTTTTGGTCC
* *
5291290 AGAATGGATGCCAAAAAGGGTGAACGCATAAAGTGTAGATACA-TTTCAAACAA-TGTCGATTCC
325 AGAATGGATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAA-AAGTGTCGATCCC
5291353 AGAAATATCGAAAC
389 AGAAATATCGAAAC
* *
5291367 CCATAATTATAATGTAATAGGTCAATTTATAATGTAACCGGTATAAATATACCGATTTTATGAGA
1 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
*
5291432 GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATTCTTTTGGTCCAGAATGG
66 GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGG
* *
5291497 ATGCTAAAAAGGGTGAAC-CATAAAGTGTCGATACATTTTCAAAAAGTGTCGATTCCAAAAACAT
131 ATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAAAAACAT
* *
5291561 CGAAACCCATAATTATAATGTAATAGGTAAATTTATAATGTAACCGGTATAAATATATCGATTTT
196 CGAAACCCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTT
* *
5291626 ATGAGAGAATAGGTCTACAACATGTATCGACCCTTTTTTAATTTTGTGTCAATTCTTTTGGTCCA
261 ATGAGAGAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCAATACTTTTGGTCCA
* *
5291691 GAATGGATGCCAAAAAGGGTGAAC-CATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCTCAA
326 GAATGGATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAG
*
5291755 AAATATTGAAAC
391 AAATATCGAAAC
*
5291767 CCATAATTATAATGTAATAGGTAAATTTACAATGTACCCGGTATAAATATACCGATTTTATGAGA
1 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
* * *
5291832 GAATATGTCTACAACATGTATCGACACGTTTTTAATTTTGTGTCGATACTTTTCGTCCAGAATGG
66 GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGG
*
5291897 ATGCCAAAAAGGGTGAACGTATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAAAAACAT
131 ATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAAAAACAT
* *
5291962 CGAAACCCATAATTATAATGTAATAGGTAAATTTTCAATGTAACCGATATAAATATACCGATTTT
196 CGAAACCCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTT
* * * *
5292027 ATGAGAGAATAGATCTACAACATGTATCGACACGTTTTTAATTTTCTATCAATACT
261 ATGAGAGAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCAATACT
5292083 AATTTAAATA
Statistics
Matches: 1048, Mismatches: 62, Indels: 15
0.93 0.06 0.01
Matches are distributed among these distances:
399 18 0.02
400 221 0.21
401 595 0.57
402 214 0.20
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.32
Consensus pattern (402 bp):
CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGG
ATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAAAAACAT
CGAAACCCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTT
ATGAGAGAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCAATACTTTTGGTCCA
GAATGGATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAG
AAATATCGAAAC
Found at i:5291132 original size:200 final size:201
Alignment explanation
Indices: 5290564--5292071 Score: 2551
Period size: 200 Copynumber: 7.5 Consensus size: 201
5290554 ACATATGCAT
* *
5290564 CCATAAGTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACC-AGTTTTATGAT
1 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGA-TTTTATGAG
*
5290628 AGAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAACG
65 AGAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATG
* *
5290693 AATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCTCAGAAACA
130 GATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAGAAACA
5290758 TCGAAAC
195 TCGAAAC
*
5290765 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAAA
1 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
5290830 GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGG
66 GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGG
* *
5290895 ATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTTAAAAAGTGTCGACCCCAGAAACAT
131 ATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAGAAACAT
5290960 CGAAAC
196 CGAAAC
* *
5290966 CTATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTAT-AATATATCGATTTTATGAGA
1 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
* * *
5291030 GAATAGGTCTACAACATGCATCGACACTTTTTTAATTTTGTATCGATACTTTTGGTCCATAATGG
66 GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGG
5291095 ATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAGAAACAT
131 ATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAGAAACAT
5291160 CGAAAC
196 CGAAAC
* *
5291166 CCATAATTATAATGTAATAGGTAAATTTACAATGTAATCTGTATAAATATACCGATTTTATGAGA
1 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
*
5291231 GAATAGGTCTACAACATGTATCGACACTTTTTTTAATTTTGTGTCTATACTTTTGGTCCAGAATG
66 GAATAGGTCTACAACATGTATCGACAC-TTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATG
* * *
5291296 GATGCCAAAAAGGGTGAACGCATAAAGTGTAGATACA-TTTCAAACAA-TGTCGATTCCAGAAAT
130 GATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAA-AAGTGTCGATCCCAGAAAC
5291359 ATCGAAAC
194 ATCGAAAC
* *
5291367 CCATAATTATAATGTAATAGGTCAATTTATAATGTAACCGGTATAAATATACCGATTTTATGAGA
1 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
*
5291432 GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATTCTTTTGGTCCAGAATGG
66 GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGG
* * *
5291497 ATGCTAAAAAGGGTGAAC-CATAAAGTGTCGATACATTTTCAAAAAGTGTCGATTCCAAAAACAT
131 ATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAGAAACAT
5291561 CGAAAC
196 CGAAAC
* *
5291567 CCATAATTATAATGTAATAGGTAAATTTATAATGTAACCGGTATAAATATATCGATTTTATGAGA
1 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
* * *
5291632 GAATAGGTCTACAACATGTATCGACCCTTTTTTAATTTTGTGTCAATTCTTTTGGTCCAGAATGG
66 GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGG
* * *
5291697 ATGCCAAAAAGGGTGAAC-CATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCTCAAAAATAT
131 ATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAGAAACAT
*
5291761 TGAAAC
196 CGAAAC
*
5291767 CCATAATTATAATGTAATAGGTAAATTTACAATGTACCCGGTATAAATATACCGATTTTATGAGA
1 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
* * *
5291832 GAATATGTCTACAACATGTATCGACACGTTTTTAATTTTGTGTCGATACTTTTCGTCCAGAATGG
66 GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGG
* *
5291897 ATGCCAAAAAGGGTGAACGTATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAAAAACAT
131 ATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAGAAACAT
5291962 CGAAAC
196 CGAAAC
* *
5291968 CCATAATTATAATGTAATAGGTAAATTTTCAATGTAACCGATATAAATATACCGATTTTATGAGA
1 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
* *
5292033 GAATAGATCTACAACATGTATCGACACGTTTTTAATTTT
66 GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTT
5292072 CTATCAATAC
Statistics
Matches: 1237, Mismatches: 63, Indels: 14
0.94 0.05 0.01
Matches are distributed among these distances:
199 18 0.01
200 602 0.49
201 544 0.44
202 73 0.06
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.32
Consensus pattern (201 bp):
CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGG
ATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAGAAACAT
CGAAAC
Found at i:5295104 original size:51 final size:53
Alignment explanation
Indices: 5295049--5295158 Score: 122
Period size: 51 Copynumber: 2.1 Consensus size: 53
5295039 AAAATGAATG
* *
5295049 CCAAAAAGGG-TGAAC-CTACAAAGTGTCGATACATTT-TCATAGAGTGTCGAT-
1 CCAAAAAGGGTTGAACAC-ACAAAGTGTCAATACATTTATCA-AAAGTGTCGATC
* * *
5295100 CC-AAAAGGGTTGCACACATAAAGTGTCAATACATTTATTAAAAGTGTCGATC
1 CCAAAAAGGGTTGAACACACAAAGTGTCAATACATTTATCAAAAGTGTCGATC
5295152 CCAAAAA
1 CCAAAAA
5295159 CATCAAAACC
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
50 7 0.14
51 33 0.67
52 5 0.10
53 4 0.08
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.25
Consensus pattern (53 bp):
CCAAAAAGGGTTGAACACACAAAGTGTCAATACATTTATCAAAAGTGTCGATC
Found at i:5295313 original size:251 final size:251
Alignment explanation
Indices: 5294904--5295357 Score: 698
Period size: 251 Copynumber: 1.8 Consensus size: 251
5294894 TAACAACCCA
* *
5294904 AAAAACATCGAAACCCATAATTATAATGTAATGGGTAATTTTTCAATATAACCGGTATAAATATA
1 AAAAACATCAAAACCCATAATTATAATGTAATAGGTAATTTTTCAATATAACCGGTATAAATATA
* * * * *
5294969 CCGGTTTTATGAAAAATATGTCTACAACATTTATCGACACTTATTAGTATTGTGTCGATACTTTT
66 CCGATTTTATGAAAAATAGGTCTACAACATGTATCGACACTTATTAATATTGTGTCGATAATTTT
* *
5295034 TGTCCAAAATGAATGCCAAAAAGGGTGAAC-CTACAAAGTGTCGATACATTTTCATAGAGTGTCG
131 TGTCCAAAATGAATGCCAAAAAGGGTGAACGC-ACAAAGTGTCGATACATTTTCAAAAAGTGTCG
5295098 AT-CCAAAAGGGTTGCACACATAAAGTGTCAATACATTTATTAAAAGTGTCGATCCC
195 ATCCCAAAAGGGTTGCACACATAAAGTGTCAATACATTTATTAAAAGTGTCGATCCC
** *
5295154 AAAAACATCAAAACCCATAATTATAATGTAATAGGTAATTTTGT-AATATAATTGGTATACATAT
1 AAAAACATCAAAACCCATAATTATAATGTAATAGGTAATTTT-TCAATATAACCGGTATAAATAT
* * *
5295218 ACCGATTTTATGAGAGAATAGGTCTATAATATGTATCGACACTTATTAATATTGTGTCGATAATT
65 ACCGATTTTATGA-AAAATAGGTCTACAACATGTATCGACACTTATTAATATTGTGTCGATAATT
* * *
5295283 TTTGTCCATAATGGATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTC
129 TTTGTCCAAAATGAATGCCAAAAAGGGTGAACGCACAAAGTGTCGATACATTTTCAAAAAGTGTC
5295348 GATCCCAAAA
194 GATCCCAAAA
5295358 ACATCGCAAC
Statistics
Matches: 182, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
250 69 0.38
251 106 0.58
252 7 0.04
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.32
Consensus pattern (251 bp):
AAAAACATCAAAACCCATAATTATAATGTAATAGGTAATTTTTCAATATAACCGGTATAAATATA
CCGATTTTATGAAAAATAGGTCTACAACATGTATCGACACTTATTAATATTGTGTCGATAATTTT
TGTCCAAAATGAATGCCAAAAAGGGTGAACGCACAAAGTGTCGATACATTTTCAAAAAGTGTCGA
TCCCAAAAGGGTTGCACACATAAAGTGTCAATACATTTATTAAAAGTGTCGATCCC
Found at i:5298644 original size:206 final size:200
Alignment explanation
Indices: 5297972--5298681 Score: 730
Period size: 200 Copynumber: 3.5 Consensus size: 200
5297962 ACCTAAATAT
* * * *
5297972 GTGTCGATACATTTTATACAAGTATCGA-CCCAAAAAAATCAAAACCAATAATTATAATGTAATA
1 GTGTCGATACA-TTTATAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAATGTAATA
* * *
5298036 GGTAAATTAACAATGTAACTGGTATAAATATACCGG-TTAATT-AGAAAACAGATCAACATAATG
65 GGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTAATTGAGAATA-AG-TCAA-ATAATG
* * * *
5298099 TATCGACACTTGTATAATTTGTGTCGATACTTATTGTCCAG---G-ATGAATGCACAAACGATGT
127 TATCGACACTTGT-TAATTTGTGTCGATACTTTTTGTCCAGAATGAATGAATGC-CCAACAAGGT
*
5298160 GCACGCATAAA
190 GCAAGCATAAA
* *
5298171 GTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAATCGATAATTATAATGTATTA
1 GTGTCGATACATTTA-TAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAATGTAATA
* * * * * * *
5298236 GGTAAATTTACAATGTAACCGATATAAATATACCGATTTCA-TGATAAAATAGGTCAGCATAAAG
65 GGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTAATTG--AGAATAAGTCA-AATAATG
* * * * *
5298300 TATCGACACTTGATAAATTTGTGTTGATACTTTTGGTCTAGAATGAAT--A---CCAAAAAGGGT
127 TATCGACACTTG-TTAATTTGTGTCGATACTTTTTGTCCAGAATGAATGAATGCCCAACAA-GGT
*
5298360 GCAATCATAAA
190 GCAAGCATAAA
* * * *
5298371 GTGTCTATACATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
1 GTGTCGATACATTTAT-AAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAATGTAATA
* *
5298436 GGTAAATTTTCAATGTAACCGGTATAAATATACCGGTTTTATTGGAGAATAAGTCTAAATAATGT
65 GGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTAATT-GAGAATAAGTC-AAATAATGT
* * * *
5298501 ATCGACATGTTGTTAGTTTGTGTCGATA-TTTTTTTCCAGAATGAAATATGAATGCCCAACCAGG
128 ATCGACA-CTTGTTAATTTGTGTCGATACTTTTTGTCCAGAATG--A-ATGAATGCCCAACAAGG
5298565 TGCAAGCATAAA
189 TGCAAGCATAAA
* ** * * *
5298577 GTGTCGATACATTTA-AAATTGTATCGATCTAAAAAAACATTGTAACCGATAATAATAATGTAAT
1 GTGTCGATACATTTATAAA-AGTATCGATC-CCAAAAACATCGAAACCGATAATTATAATGTAAT
*
5298641 AGGTAAATTTACAATGTTACCGGTATAAATATACCGGTTTA
64 AGGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTA
5298682 CTTCAAAAAT
Statistics
Matches: 419, Mismatches: 64, Indels: 49
0.79 0.12 0.09
Matches are distributed among these distances:
198 4 0.01
199 39 0.09
200 203 0.48
201 51 0.12
202 5 0.01
203 5 0.01
204 5 0.01
205 11 0.03
206 91 0.22
207 5 0.01
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.31
Consensus pattern (200 bp):
GTGTCGATACATTTATAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAATGTAATAG
GTAAATTTACAATGTAACCGGTATAAATATACCGGTTTAATTGAGAATAAGTCAAATAATGTATC
GACACTTGTTAATTTGTGTCGATACTTTTTGTCCAGAATGAATGAATGCCCAACAAGGTGCAAGC
ATAAA
Found at i:5298803 original size:87 final size:87
Alignment explanation
Indices: 5298698--5298860 Score: 299
Period size: 87 Copynumber: 1.9 Consensus size: 87
5298688 AAATAAGTCA
5298698 ATATAAGCGCTACATATTACATTATATAAGAGCTACCTAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTACATATTACATTATATAAGAGCTACCTAATATGTTATTGTACTTGATAATATTT
*
5298763 TCGGTTAAATGCCTATTTTATT
66 CCGGTTAAATGCCTATTTTATT
* *
5298785 ATATAAGCGCTACTTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTACATATTACATTATATAAGAGCTACCTAATATGTTATTGTACTTGATAATATTT
5298850 CCGGTTAAATG
66 CCGGTTAAATG
5298861 ATATAACATT
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
87 73 1.00
ACGTcount: A:0.33, C:0.13, G:0.12, T:0.41
Consensus pattern (87 bp):
ATATAAGCGCTACATATTACATTATATAAGAGCTACCTAATATGTTATTGTACTTGATAATATTT
CCGGTTAAATGCCTATTTTATT
Found at i:5298832 original size:23 final size:23
Alignment explanation
Indices: 5298782--5298826 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
5298772 TGCCTATTTT
* *
5298782 ATTATATAAGCGCTACTTATTAC
1 ATTATATAAGCGCTACCTAATAC
5298805 ATTATATAAGCGCTACCTAATA
1 ATTATATAAGCGCTACCTAATA
5298827 TGTTATTGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.36
Consensus pattern (23 bp):
ATTATATAAGCGCTACCTAATAC
Found at i:5303839 original size:4 final size:4
Alignment explanation
Indices: 5303830--5303861 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
5303820 ATGTACATAT
5303830 AATA AATA AATA AATA AATA AATA AATA AATA
1 AATA AATA AATA AATA AATA AATA AATA AATA
5303862 TAAAGGAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
AATA
Found at i:5303906 original size:10 final size:10
Alignment explanation
Indices: 5303893--5303925 Score: 57
Period size: 10 Copynumber: 3.2 Consensus size: 10
5303883 AAAAATGAAG
5303893 AAAATAAAAA
1 AAAATAAAAA
5303903 AAAATAAAAA
1 AAAATAAAAA
5303913 AAAATAAAGAA
1 AAAATAAA-AA
5303924 AA
1 AA
5303926 GCAAATAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 18 0.82
11 4 0.18
ACGTcount: A:0.88, C:0.00, G:0.03, T:0.09
Consensus pattern (10 bp):
AAAATAAAAA
Found at i:5304104 original size:16 final size:17
Alignment explanation
Indices: 5304077--5304110 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
5304067 AATAATAGGA
*
5304077 AAAAAATCAAAAGAAAT
1 AAAAAATCAAAAAAAAT
5304094 AAAAAAT-AAAAAAAAT
1 AAAAAATCAAAAAAAAT
5304110 A
1 A
5304111 GGAATAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.12
Consensus pattern (17 bp):
AAAAAATCAAAAAAAAT
Found at i:5304129 original size:40 final size:36
Alignment explanation
Indices: 5304055--5304129 Score: 87
Period size: 37 Copynumber: 2.0 Consensus size: 36
5304045 TAATAAGTAG
* * *
5304055 AATAAAAAAAATAATAATAGGAAAAAAATCAAAAGA
1 AATAAAAAAAAAAAAAATAGGAAAAAAATAAAAAGA
5304091 AATAAAAAATAAAAAAAATAGGAATAAACAAATAAAAAG
1 AATAAAAAA-AAAAAAAATAGG-A-AAA-AAATAAAAAG
5304130 GATTCAAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
36 9 0.28
37 10 0.31
38 1 0.03
39 3 0.09
40 9 0.28
ACGTcount: A:0.76, C:0.03, G:0.08, T:0.13
Consensus pattern (36 bp):
AATAAAAAAAAAAAAAATAGGAAAAAAATAAAAAGA
Found at i:5304293 original size:11 final size:11
Alignment explanation
Indices: 5304279--5304319 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
5304269 GTGTAAACAA
5304279 AATAAAATGAA-
1 AATAAAA-GAAT
5304290 AATAAAA-AAT
1 AATAAAAGAAT
5304300 AATAAAAAGAAT
1 AAT-AAAAGAAT
5304312 AATAAAAG
1 AATAAAAG
5304320 GATTAAATTG
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
9 2 0.07
10 3 0.11
11 16 0.59
12 6 0.22
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (11 bp):
AATAAAAGAAT
Found at i:5304312 original size:12 final size:12
Alignment explanation
Indices: 5304279--5304318 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
5304269 GTGTAAACAA
*
5304279 AATAAAATGAA-
1 AATAAAAAGAAT
5304290 AAT-AAAA-AAT
1 AATAAAAAGAAT
5304300 AATAAAAAGAAT
1 AATAAAAAGAAT
5304312 AATAAAA
1 AATAAAA
5304319 GGATTAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
9 2 0.08
10 6 0.24
11 7 0.28
12 10 0.40
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (12 bp):
AATAAAAAGAAT
Found at i:5304327 original size:92 final size:93
Alignment explanation
Indices: 5304220--5304399 Score: 312
Period size: 93 Copynumber: 1.9 Consensus size: 93
5304210 ACGAATAAAA
*
5304220 AATAAAAGGATTAAATT-AAATTAAAAATAAATGAA-AAATATATAATAATGTGTAAACAAAATA
1 AATAAAAGGATTAAATTGAAA-TAAAAATAAATAAATAAATATATAATAATGTGTAAACAAAATA
5304283 AAATGAAAATAAAA-AATAATAAAAAGAAT
65 AAATGAAAA-AAAAGAATAATAAAAAGAAT
5304312 AATAAAAGGATTAAATTGAAATAAAAATAAATAAATAAATATATAATAATGTGTAAACAAAATAA
1 AATAAAAGGATTAAATTGAAATAAAAATAAATAAATAAATATATAATAATGTGTAAACAAAATAA
5304377 AATGAAAAAAAAGAATAATAAAA
66 AATGAAAAAAAAGAATAATAAAA
5304400 GGATTAAATT
Statistics
Matches: 84, Mismatches: 1, Indels: 5
0.93 0.01 0.06
Matches are distributed among these distances:
92 34 0.40
93 50 0.60
ACGTcount: A:0.68, C:0.01, G:0.08, T:0.23
Consensus pattern (93 bp):
AATAAAAGGATTAAATTGAAATAAAAATAAATAAATAAATATATAATAATGTGTAAACAAAATAA
AATGAAAAAAAAGAATAATAAAAAGAAT
Found at i:5304334 original size:41 final size:42
Alignment explanation
Indices: 5304289--5304413 Score: 122
Period size: 40 Copynumber: 3.1 Consensus size: 42
5304279 AATAAAATGA
5304289 AAATAAAAAAT-AATAAAAAGAATAATAAAAGGATTAAATTG
1 AAATAAAAAATAAATAAAAAGAATAATAAAAGGATTAAATTG
* * *
5304330 AAAT-AAAAATAAATAAATA-AATATATAATAATG-TGTAAA--C
1 AAATAAAAAATAAATAAAAAGAATA-ATAA-AAGGAT-TAAATTG
*
5304370 AAA-ATAAAATGAAA-AAAAAGAATAATAAAAGGATTAAATTG
1 AAATAAAAAAT-AAATAAAAAGAATAATAAAAGGATTAAATTG
5304411 AAA
1 AAA
5304414 GGAAAACAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 20
0.71 0.07 0.21
Matches are distributed among these distances:
39 7 0.10
40 27 0.40
41 26 0.39
42 7 0.10
ACGTcount: A:0.68, C:0.01, G:0.09, T:0.22
Consensus pattern (42 bp):
AAATAAAAAATAAATAAAAAGAATAATAAAAGGATTAAATTG
Found at i:5304340 original size:81 final size:82
Alignment explanation
Indices: 5304248--5304419 Score: 183
Period size: 81 Copynumber: 2.1 Consensus size: 82
5304238 AATTAAAAAT
* * * *
5304248 AAATGAAAAATATAT-AAT-AATGTGTAAACAAAAT-AAAATGAAAATAAAA-AATAATAAAAAG
1 AAATGAAAAATAAATAAATAAATATAT-AACAAAATGAAAA-CAAAATAAAATAA-AA-AAAAAG
5304309 AATAATAAAAGGATTAAATTG
62 AATAATAAAAGGATTAAATTG
* ** * *
5304330 AAAT-AAAAATAAATAAATAAATATATAATAATGTGTAAACAAAATAAAATGAAAAAAAAGAATA
1 AAATGAAAAATAAATAAATAAATATATAACAAAATGAAAACAAAATAAAATAAAAAAAAAGAATA
5304394 ATAAAAGGATTAAATTG
66 ATAAAAGGATTAAATTG
*
5304411 AAAGGAAAA
1 AAATGAAAA
5304420 CAAAATTAGG
Statistics
Matches: 75, Mismatches: 10, Indels: 10
0.79 0.11 0.11
Matches are distributed among these distances:
81 39 0.52
82 27 0.36
83 9 0.12
ACGTcount: A:0.67, C:0.01, G:0.10, T:0.22
Consensus pattern (82 bp):
AAATGAAAAATAAATAAATAAATATATAACAAAATGAAAACAAAATAAAATAAAAAAAAAGAATA
ATAAAAGGATTAAATTG
Found at i:5305543 original size:2 final size:2
Alignment explanation
Indices: 5305536--5305568 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
5305526 TAATAAAATA
*
5305536 AT AT AT AT AT AT AT AT A- AT AC AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5305569 GTATCCTTCG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:5305555 original size:17 final size:17
Alignment explanation
Indices: 5305533--5305568 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
5305523 TGTTAATAAA
*
5305533 ATAATATATATATATAT
1 ATAATACATATATATAT
5305550 ATAATACATATATATAT
1 ATAATACATATATATAT
5305567 AT
1 AT
5305569 GTATCCTTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (17 bp):
ATAATACATATATATAT
Found at i:5306160 original size:124 final size:123
Alignment explanation
Indices: 5305964--5306817 Score: 910
Period size: 124 Copynumber: 6.8 Consensus size: 123
5305954 TTTGGGTACA
* *
5305964 ATATCATTCGTCGTGAAGTTGAAATCGTGGATGGCTCATTCGTTGTGAAGTTGAGCCTTGAATTG
1 ATATCCTTCGTCGTGAAGTTGAAATCGTGGATGGCCCATTCGTTGTGAAGTTGAGCCTTGAATTG
* * * * *
5306029 GATATCATTCGTCATGAAGTTGAAATCCAATCTAGAGTTGTATGCTGCTTGTAGGCACG
66 GATATCATTCGTCGTGAAGTTGAAATCCAATCTAAAGATGAATGTTGCTTGT-GGCACG
* * * *
5306088 ATATCATTCGTCGTGAAGTTGAAATCGTGGATGACCCCTTCGCTGTGAAGTTGAGCCTTGAATTG
1 ATATCCTTCGTCGTGAAGTTGAAATCGTGGATGGCCCATTCGTTGTGAAGTTGAGCCTTGAATTG
* * * * * * * *
5306153 GATATCATTCATCGTGAAGTTGAAATCCAATGTTGTGTAAGTTG-A-GTTGTTTCGAGTC-CA
66 GATATCATTCGTCGTGAAGTTGAAATCCAA---TCT-AAAGATGAATGTTGCTT-GTGGCACG
* ** * *
5306213 ATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAATGAAAAGGGAAAGCTCATTCGCTGTGAAGT
1 ATATCCTTCGTCGTGAAGTTG-AA---A-TC-G--T------GGATGGCCCATTCGTTGTGAAGT
* * * * *
5306278 TGAGCCTTTAATTGGATATCTTTCGTCGCGAAGTTGAAATCCAATCTAAAGATGAATGTTGATGG
52 TGAGCCTTGAATTGGATATCATTCGTCGTGAAGTTGAAATCCAATCTAAAGATGAATGTTGCTTG
*
5306343 TGGGTACG
117 T-GGCACG
* * * * * *
5306351 ATATCCTTCATCCTGAAGTTGAAATCGTGGATGACACATTCGTTGTGAATTTGAGCATTGAATTG
1 ATATCCTTCGTCGTGAAGTTGAAATCGTGGATGGCCCATTCGTTGTGAAGTTGAGCCTTGAATTG
*
5306416 GATATCATTCGTCGTGAAGTTGAAATCCAATCTAAAGAT-AGATGTTGCTGGTGGGCACG
66 GATATCATTCGTCGTGAAGTTGAAATCCAATCTAAAGATGA-ATGTTGCTTGT-GGCACG
* * * * *
5306475 ATATCCTTCGTCGTGAAGTTGAAATCATGAATGGCCTATTCGTTGAGAAGTTGAGCCTTGAATTA
1 ATATCCTTCGTCGTGAAGTTGAAATCGTGGATGGCCCATTCGTTGTGAAGTTGAGCCTTGAATTG
*
5306540 GATATTC-TTCGTCATGAAGTTGAAATCCAATCTAAAGATGAATGTTG-TTGGTGGACACG
66 GATA-TCATTCGTCGTGAAGTTGAAATCCAATCTAAAGATGAATGTTGCTT-GTGG-CACG
* * * * * *
5306599 ATATCCTTTGTCATGAAGTTGAAATCGTAGATGGCTCATTCGTTGTAAAGTTGAACCTTGAATTG
1 ATATCCTTCGTCGTGAAGTTGAAATCGTGGATGGCCCATTCGTTGTGAAGTTGAGCCTTGAATTG
* * * *
5306664 GATATCCTTCATCGTGAAGTTGAAATCCAATCTAAAGATGAATATTGCTAGTGGACACG
66 GATATCATTCGTCGTGAAGTTGAAATCCAATCTAAAGATGAATGTTGCTTGTGG-CACG
* * *
5306723 ATATCCTTCGTCGTGAAGTTAAAATCGTGGATGGCCCCTTCGTTGTGAAGTTGAGTCTTGAATTG
1 ATATCCTTCGTCGTGAAGTTGAAATCGTGGATGGCCCATTCGTTGTGAAGTTGAGCCTTGAATTG
*
5306788 GATATCATTCGTCGTAAAGTTGAAATCCAA
66 GATATCATTCGTCGTGAAGTTGAAATCCAA
5306818 GTATTGTTTC
Statistics
Matches: 611, Mismatches: 89, Indels: 60
0.80 0.12 0.08
Matches are distributed among these distances:
123 6 0.01
124 459 0.75
125 24 0.04
126 9 0.01
127 4 0.01
128 5 0.01
129 1 0.00
130 3 0.00
131 1 0.00
132 1 0.00
133 3 0.00
134 1 0.00
135 5 0.01
136 4 0.01
137 8 0.01
138 19 0.03
139 58 0.09
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (123 bp):
ATATCCTTCGTCGTGAAGTTGAAATCGTGGATGGCCCATTCGTTGTGAAGTTGAGCCTTGAATTG
GATATCATTCGTCGTGAAGTTGAAATCCAATCTAAAGATGAATGTTGCTTGTGGCACG
Found at i:5307180 original size:147 final size:147
Alignment explanation
Indices: 5306920--5307405 Score: 713
Period size: 147 Copynumber: 3.3 Consensus size: 147
5306910 ATTCTTCGAT
* * *** *
5306920 GTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTATTTGTTGACAAACATTCTTTCGTTGT
1 GTGAAGTTGAAATTGACTCTGAATGAAACTGGAAAGTTATTTGTTGACAGACGCCCATTCGTTGT
* ** * *
5306985 GAAGTTGAGT-TTTGTATTGGATATATTTCGTTGTGAAGTTGAAATCCAATCTTGTCTTGTTTTG
66 GAAGTTGA-TCTTTGAATTGGATATCCTTCGTTGTGAAGTTGAAATCCAATCTTGTGTTGTTTCG
5307049 AGTCCAAGATCCTTCGCC
130 AGTCCAAGATCCTTCGCC
* * *
5307067 GTGAAGTTCAAATTGACTCTGAATAAAACTGGAAAGTTATTTATTGACAGACGCCCATTCGTTGT
1 GTGAAGTTGAAATTGACTCTGAATGAAACTGGAAAGTTATTTGTTGACAGACGCCCATTCGTTGT
5307132 GAAGTTGATCTTTGAATTGGATATCCTTCGTTGTGAAGTTGAAATCCAATCTTGTGTTGTTTCGA
66 GAAGTTGATCTTTGAATTGGATATCCTTCGTTGTGAAGTTGAAATCCAATCTTGTGTTGTTTCGA
* **
5307197 GTCTAAGATCCTTCATC
131 GTCCAAGATCCTTCGCC
* * * *
5307214 GTGAAGTTGAAATTGACTCTGAATGAAACTAGAAAGTTATTTGTTGATAGACGCCCCTTCGCTGT
1 GTGAAGTTGAAATTGACTCTGAATGAAACTGGAAAGTTATTTGTTGACAGACGCCCATTCGTTGT
* * * *
5307279 AAAGTTGAGCTTTGAATTGGATATCCTTCGTTTTGAAGTTGAAATCCAATCTTGTGTTGTTTCAA
66 GAAGTTGATCTTTGAATTGGATATCCTTCGTTGTGAAGTTGAAATCCAATCTTGTGTTGTTTCGA
*
5307344 GTCCAAGATCATTCGCC
131 GTCCAAGATCCTTCGCC
*
5307361 GTGAAGTTGAAATTGACTCTGAATGAAACTGGAAAGTCATTTGTT
1 GTGAAGTTGAAATTGACTCTGAATGAAACTGGAAAGTTATTTGTT
5307406 AAGTCCAATA
Statistics
Matches: 304, Mismatches: 34, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
146 1 0.00
147 303 1.00
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (147 bp):
GTGAAGTTGAAATTGACTCTGAATGAAACTGGAAAGTTATTTGTTGACAGACGCCCATTCGTTGT
GAAGTTGATCTTTGAATTGGATATCCTTCGTTGTGAAGTTGAAATCCAATCTTGTGTTGTTTCGA
GTCCAAGATCCTTCGCC
Found at i:5307423 original size:64 final size:64
Alignment explanation
Indices: 5307342--5307508 Score: 253
Period size: 64 Copynumber: 2.6 Consensus size: 64
5307332 GTGTTGTTTC
* * * *
5307342 AAGTCCAAGATCATTCGCCGTGAAGTTGAAATTGACTCTGAATGAAACTGGAAAGTCATTTGTT
1 AAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATAAAACTGGAAAGTCATTTGTT
* **
5307406 AAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATAAAACTGGAACGTTGTTTGTT
1 AAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATAAAACTGGAAAGTCATTTGTT
* *
5307470 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCT
1 AAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCT
5307509 AAAAGCTGCA
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 94 1.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (64 bp):
AAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATAAAACTGGAAAGTCATTTGTT
Found at i:5311258 original size:19 final size:18
Alignment explanation
Indices: 5311238--5311299 Score: 74
Period size: 19 Copynumber: 3.4 Consensus size: 18
5311228 ATGTACATAT
5311238 AATAAATAAATAAAT--A
1 AATAAATAAATAAATAAA
5311254 AATAAATAAATAAAATAAA
1 AATAAATAAAT-AAATAAA
* *
5311273 AATAAATAAAGAGATAAAA
1 AATAAATAAATAAAT-AAA
5311292 AATAAATA
1 AATAAATA
5311300 TAAAGGAAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
16 11 0.28
17 4 0.10
18 3 0.08
19 22 0.55
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (18 bp):
AATAAATAAATAAATAAA
Found at i:5311313 original size:4 final size:4
Alignment explanation
Indices: 5311238--5311299 Score: 76
Period size: 4 Copynumber: 16.0 Consensus size: 4
5311228 ATGTACATAT
*
5311238 AATA AATA AATA AATA AATA AATA AATA AA-A TAA-A AATA AATA AAGA
1 AATA AATA AATA AATA AATA AATA AATA AATA -AATA AATA AATA AATA
*
5311285 GATA AA-A AATA AATA
1 AATA AATA AATA AATA
5311300 TAAAGGAAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
3 6 0.12
4 45 0.88
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (4 bp):
AATA
Found at i:5311313 original size:19 final size:19
Alignment explanation
Indices: 5311245--5311313 Score: 50
Period size: 21 Copynumber: 3.4 Consensus size: 19
5311235 TATAATAAAT
**
5311245 AAATAAATAAATAAATAAATA
1 AAATAAATAAAT--ATAAAGG
*
5311266 AAATAAA-AATAAATAAAGAG
1 AAATAAATAA-ATATAAAG-G
*
5311286 ATAAAAAATAAATATAAAGG
1 A-AATAAATAAATATAAAGG
5311306 AAATAAAT
1 AAATAAAT
5311314 GTAAGATAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
19 11 0.29
20 5 0.13
21 20 0.53
22 2 0.05
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.20
Consensus pattern (19 bp):
AAATAAATAAATATAAAGG
Found at i:5311536 original size:26 final size:23
Alignment explanation
Indices: 5311507--5311561 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
5311497 TAGGAATAAA
5311507 AATAAAAAGAAATAAATAAAATATAT
1 AATAAAAAG-AA-AAATAAAA-ATAT
* *
5311533 AATAAAAAGTAAAATGAAAATAT
1 AATAAAAAGAAAAATAAAAATAT
5311556 AATAAA
1 AATAAA
5311562 CAAATAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 10 0.37
24 7 0.26
25 1 0.04
26 9 0.33
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.22
Consensus pattern (23 bp):
AATAAAAAGAAAAATAAAAATAT
Found at i:5311538 original size:12 final size:11
Alignment explanation
Indices: 5311501--5311573 Score: 57
Period size: 12 Copynumber: 6.7 Consensus size: 11
5311491 TAATAATAGG
5311501 AATAAAAATA-
1 AATAAAAATAT
5311511 AA-AAGAAATA-
1 AATAA-AAATAT
5311521 AATAAAATATAT
1 AATAAAA-ATAT
*
5311533 AATAAAAAGTAA
1 AATAAAAA-TAT
*
5311545 AATGAAAATAT
1 AATAAAAATAT
5311556 AATAAACAA-AT
1 AATAAA-AATAT
5311567 AA-AAAAA
1 AATAAAAA
5311574 GATTAAAATA
Statistics
Matches: 53, Mismatches: 4, Indels: 13
0.76 0.06 0.19
Matches are distributed among these distances:
9 4 0.08
10 14 0.26
11 17 0.32
12 18 0.34
ACGTcount: A:0.75, C:0.01, G:0.04, T:0.19
Consensus pattern (11 bp):
AATAAAAATAT
Found at i:5311560 original size:55 final size:60
Alignment explanation
Indices: 5311470--5311593 Score: 138
Period size: 55 Copynumber: 2.1 Consensus size: 60
5311460 CTATATATAT
*
5311470 ATAAGTATATTAAAAAGAAAATAATAATAGGAAT-AA-AAATAAAAAGAA-A-T-AAATAAA
1 ATAA-TATAATAAAAAGAAAATAATAATAGGAATAAACAAATAAAAA-AAGATTAAAATAAA
*
5311527 AT-ATATAATAAAAAGTAAAATGAA-AATA-TAATAAACAAATAAAAAAAGATTAAAATAAA
1 ATAATATAATAAAAAG-AAAAT-AATAATAGGAATAAACAAATAAAAAAAGATTAAAATAAA
5311586 ATAATATA
1 ATAATATA
5311594 TATATATATA
Statistics
Matches: 57, Mismatches: 2, Indels: 13
0.79 0.03 0.18
Matches are distributed among these distances:
55 14 0.25
56 14 0.25
57 14 0.25
58 1 0.02
59 9 0.16
60 5 0.09
ACGTcount: A:0.70, C:0.01, G:0.06, T:0.23
Consensus pattern (60 bp):
ATAATATAATAAAAAGAAAATAATAATAGGAATAAACAAATAAAAAAAGATTAAAATAAA
Found at i:5311571 original size:25 final size:24
Alignment explanation
Indices: 5311501--5311591 Score: 70
Period size: 24 Copynumber: 4.0 Consensus size: 24
5311491 TAATAATAGG
*
5311501 AATAAAA-ATA-AA-AAGAAAT-A
1 AATAAAATATATAATAAAAAATAA
*
5311521 AATAAAATATATAATAAAAAGTAA
1 AATAAAATATATAATAAAAAATAA
*
5311545 AATGAAA-ATATAATAAACAAATAA
1 AATAAAATATATAATAAA-AAATAA
*
5311569 AA-AAAGAT-TAAAATAAAATAATA
1 AATAAA-ATATATAATAAAA-AATA
5311592 TATATATATA
Statistics
Matches: 57, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
20 7 0.12
21 3 0.05
22 2 0.04
23 18 0.32
24 27 0.47
ACGTcount: A:0.74, C:0.01, G:0.04, T:0.21
Consensus pattern (24 bp):
AATAAAATATATAATAAAAAATAA
Found at i:5311699 original size:16 final size:16
Alignment explanation
Indices: 5311674--5311796 Score: 73
Period size: 16 Copynumber: 7.6 Consensus size: 16
5311664 ATAAAAGGAT
*
5311674 TAAATTAAAATAAAAA
1 TAAATGAAAATAAAAA
5311690 TAAATGAAAA-AAAATA
1 TAAATGAAAATAAAA-A
* *
5311706 TAATGTGTAAA-AAAAA
1 TAA-ATGAAAATAAAAA
5311722 TAAAATGAAAATAAAAA
1 T-AAATGAAAATAAAAA
*
5311739 -AGAAT-AAAA-ATAAA
1 TA-AATGAAAATAAAAA
5311753 -AAA-GAATAATAAAAGGA
1 TAAATGAA-AATAAAA--A
5311770 TTAAATTG-AAATAAAAA
1 -TAAA-TGAAAATAAAAA
5311787 TAAATGAAAA
1 TAAATGAAAA
5311797 ATATATATAA
Statistics
Matches: 85, Mismatches: 7, Indels: 30
0.70 0.06 0.25
Matches are distributed among these distances:
13 4 0.05
14 7 0.08
15 14 0.16
16 30 0.35
17 18 0.21
19 10 0.12
20 1 0.01
21 1 0.01
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.20
Consensus pattern (16 bp):
TAAATGAAAATAAAAA
Found at i:5311738 original size:38 final size:38
Alignment explanation
Indices: 5311653--5311747 Score: 97
Period size: 39 Copynumber: 2.4 Consensus size: 38
5311643 TAAGATAAAC
*
5311653 AAATAAAAAAAATAAAAGGATTAAATTAAAATAAAAAT
1 AAATAAAAAAAATAAAAGGATTAAATAAAAATAAAAAT
* *
5311691 AAATGAAAAAAAATATAATG-TGTAAA-AAAAAT-AAAAT
1 AAAT-AAAAAAAATAAAAGGAT-TAAATAAAAATAAAAAT
5311728 GAAAATAAAAAAGAATAAAA
1 --AAATAAAAAA-AATAAAA
5311748 ATAAAAAAGA
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
37 5 0.10
38 16 0.33
39 27 0.56
ACGTcount: A:0.74, C:0.00, G:0.07, T:0.19
Consensus pattern (38 bp):
AAATAAAAAAAATAAAAGGATTAAATAAAAATAAAAAT
Found at i:5311764 original size:97 final size:98
Alignment explanation
Indices: 5311599--5311845 Score: 310
Period size: 97 Copynumber: 2.5 Consensus size: 98
5311589 ATATATATAT
* * *
5311599 ATATATATATATTGTATAAAAAACAATAAGAAAT-AAAATCAAAATAAG-ATAAACAAATAAAAA
1 ATATATATATAATGTGTAAAAAA-AAT-A-AAATGAAAAT-AAAA-AAGAATAAACAAAAAAAAA
5311662 AAATAAAAGGATTAAATTAAAATAAAAATAAATGAAAA
61 AAATAAAAGGATTAAATTAAAATAAAAATAAATGAAAA
5311700 A-A-A-ATATAATGTGTAAAAAAAATAAAATGAAAATAAAAAAGAATAAA-AATAAAAAAGAATA
1 ATATATATATAATGTGTAAAAAAAATAAAATGAAAATAAAAAAGAATAAACAA-AAAAAA-AA-A
*
5311761 ATAAAAGGATTAAATTGAAATAAAAATAAATGAAAA
63 ATAAAAGGATTAAATTAAAATAAAAATAAATGAAAA
* *
5311797 ATATATATAATAATGTGTAAACAAAACAAAATGAAAA-AAAAAAGAATAA
1 ATATATAT-ATAATGTGTAAAAAAAATAAAATGAAAATAAAAAAGAATAA
5311846 TAAAATGATT
Statistics
Matches: 131, Mismatches: 6, Indels: 19
0.84 0.04 0.12
Matches are distributed among these distances:
94 5 0.04
95 18 0.14
96 8 0.06
97 40 0.31
98 16 0.12
99 2 0.02
100 15 0.11
101 27 0.21
ACGTcount: A:0.69, C:0.02, G:0.08, T:0.21
Consensus pattern (98 bp):
ATATATATATAATGTGTAAAAAAAATAAAATGAAAATAAAAAAGAATAAACAAAAAAAAAAAATA
AAAGGATTAAATTAAAATAAAAATAAATGAAAA
Found at i:5312983 original size:15 final size:15
Alignment explanation
Indices: 5312959--5312991 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
5312949 TAAAATAATA
5312959 ATAATACATATATAT
1 ATAATACATATATAT
*
5312974 ATAATGCATATATAT
1 ATAATACATATATAT
5312989 ATA
1 ATA
5312992 TGTATGCTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (15 bp):
ATAATACATATATAT
Found at i:5316422 original size:134 final size:133
Alignment explanation
Indices: 5316159--5316430 Score: 474
Period size: 134 Copynumber: 2.0 Consensus size: 133
5316149 AAAAATATTC
5316159 TTTGACAATAATTAATGAGCTCATTATACAAAGTAACAGTAGTAGAGAGGAAGCCGACTGATTTT
1 TTTGACAATAATTAATGAGCTCATTATACAAAGTAACAGTAGTAGAGAGGAAGCCGACTGA----
5316224 TTTTTTTTTTTTTGCAATAATACAGTCAAAAAAAATTGTTCAAATAATGCACCAGAAAGATTATT
62 -TTTTTTTTTTTTGCAATAATACAGTCAAAAAAAATTGTTCAAATAATGCACCAGAAAGATTA-T
5316289 TACTCGAAT
125 TACTCGAAT
5316298 TTTGACAATAAATTAATGAGCTCATTATACAAAGTAACAGTAGTAGAGAGGAAGCCGACTGA-TT
1 TTTGACAAT-AATTAATGAGCTCATTATACAAAGTAACAGTAGTAGAGAGGAAGCCGACTGATTT
5316362 TTTTTTTTTGCAATAATACAGTCAAAAAAAATTGTTCAAATAATGCACCAGAAAGATTATTACTC
65 TTTTTTTTTGCAATAATACAGTCAAAAAAAATTGTTCAAATAATGCACCAGAAAGATTATTACTC
5316427 GAAT
130 GAAT
5316431 AAGGTGAATG
Statistics
Matches: 132, Mismatches: 0, Indels: 8
0.94 0.00 0.06
Matches are distributed among these distances:
133 10 0.08
134 61 0.46
139 9 0.07
140 52 0.39
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.33
Consensus pattern (133 bp):
TTTGACAATAATTAATGAGCTCATTATACAAAGTAACAGTAGTAGAGAGGAAGCCGACTGATTTT
TTTTTTTTGCAATAATACAGTCAAAAAAAATTGTTCAAATAATGCACCAGAAAGATTATTACTCG
AAT
Found at i:5317347 original size:14 final size:14
Alignment explanation
Indices: 5317328--5317375 Score: 55
Period size: 12 Copynumber: 3.5 Consensus size: 14
5317318 TATGTTTATG
5317328 AACTATATATATAA
1 AACTATATATATAA
*
5317342 AAC--TATATATGA
1 AACTATATATATAA
*
5317354 AACTATATATGTATA
1 AACTATATATATA-A
5317369 AACTATA
1 AACTATA
5317376 AAAAGTATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
12 11 0.39
14 9 0.32
15 8 0.29
ACGTcount: A:0.52, C:0.08, G:0.04, T:0.35
Consensus pattern (14 bp):
AACTATATATATAA
Found at i:5317375 original size:25 final size:25
Alignment explanation
Indices: 5317324--5317400 Score: 70
Period size: 25 Copynumber: 3.1 Consensus size: 25
5317314 AAATTATGTT
5317324 TATG-AACTATATATATA-AAACTATA
1 TATGAAACTATATATATATAAAC--TA
*
5317349 TATGAAACTATATATGTATAAACTA
1 TATGAAACTATATATATATAAACTA
* * *
5317374 TA-AAAAGTATATAGTTTATAAACTA
1 TATGAAACTATATA-TATATAAACTA
5317399 TA
1 TA
5317401 ATTTATATTA
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
24 9 0.20
25 20 0.44
26 12 0.27
27 4 0.09
ACGTcount: A:0.51, C:0.06, G:0.06, T:0.36
Consensus pattern (25 bp):
TATGAAACTATATATATATAAACTA
Found at i:5317750 original size:4 final size:4
Alignment explanation
Indices: 5317741--5321296 Score: 6104
Period size: 4 Copynumber: 910.5 Consensus size: 4
5317731 TTTAATTTTC
5317741 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5317789 TATG TA-G TATG TATG TATG TATTG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TA-TG TATG TATG TATG TATG TATG TATG
5317837 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5317885 TATG TATG TAT- TATG TATG TATG TATG -AT- TATG TATG TATG TA-G
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5317929 TATG TATG TATG TATG TATG TATG TA-- TATG TATG T-TG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5317974 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
5318022 TATG TATG TATG TATG TATG TCTG TATG TATG TATG TATG TA-- TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5318068 TATG TATG TATG TATG TATG TA-G TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5318115 TATG TATG TATG TATG TAT- TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5318162 TATG TGATG TATG --TG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG T-ATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
5318209 TATG TA-G TATG TATG TCTG TA-G TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
5318255 TATG TATG TATG GATG TATG TATG TATG TATG TAATG TATG TA-G TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG T-ATG TATG TATG TATG
5318303 TATG TATG TATG TATTG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TA-TG TATG TATG TATG TATG TATG TATG TATG TATG
5318352 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5318400 TATGG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TAT-G TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
5318449 TATG TATG TATG T-TG TATG TATG GATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
5318496 TATG TATG TATG TATG TATG TAT- TATG TATG TATG T-TG TATG TAGG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5318542 TATG TATG TATG TATG TATG TATG TATG TATG T-TG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
5318589 TA-G TATG TAGG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5318636 TATG T-TG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5318683 TATG TATG TATG TATG TATG TATG TATG TAT- TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
5318730 GATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
5318778 TATG TATG TATG GATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5318826 TATG TA-- TATG TATG TATG TATG TTATG TA-- TATG TA-G TATG TATG
1 TATG TATG TATG TATG TATG TATG -TATG TATG TATG TATG TATG TATG
5318870 TATG TATG --TG TATG TATG TATG TATG TAT- TATG TATG TATG TA-G
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5318914 TATG TATG TATG TATG TA-G TATG TATG T-TG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5318960 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5319008 TATG TATG TATG TATG TATG TATG TATG T-TG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5319055 TATG TA-G TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5319102 TATG TATG TATG TATG TATG TATGG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TAT-G TATG TATG TATG TATG TATG TATG
5319151 TATG TA-G TATG TATG TTATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG -TATG TATG TATG TATG TATG TATG TATG TATG
5319199 TATG TATG TA-G TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5319246 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
5319294 TATG TATG TAT- TATG TATG TATG TATG TATG TATG TATG TATG TAGG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5319341 TA-G -ATG TATG TATG TATG TATG TATG TATG TATG TATG --TG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* *
5319385 TATG TATG TATG TATG TGTG TA-- TATG TTTG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* *
5319431 TATG TATG TCTG TATG GATG TATG TATG TATG --TG TATG TA-- TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5319475 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5319523 TATG TATG TATG TATG TATG T-TG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5319570 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* *
5319618 TATG TATG TATG TATG TAT- TTTG TATG TATG TATG TAT- TATG TAGG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5319664 TATG TATG TATG TATG TATG -ATG TATG TATG TATG TATG TA-- TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5319709 TATG TATG TATGG TATG TA-G TATG TATG TA-- TATG TATG TATG TATG
1 TATG TATG TAT-G TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
5319755 TATG TAT- T-TG TATG TATG TATG TATG TATG TAGG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5319801 TATG TATG TATG TATG TATG TATG T-TG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5319848 T-TG TATG TATG TA-G TATG TA-G TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5319893 TATG TATG TATG TATG TATG TAT- TATG TA-G TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* *
5319939 TATG TATG TATG TATG TCTG TATG TATG TATG TATG TATG TATG TAGG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5319987 TATG TAT- TATG TATG TA-G TATG TATG TAT- TATG TATG T-TG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5320031 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TA-- TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5320077 TATG TATG TTATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG -TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5320126 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5320174 TATG TATG TATG TATG TATG TATG TATG TATG TATG T-TGG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT-G TATG TATG
5320222 TATG TATG TATG T-T- TATG TATG TA-G TATG TATG TATG TA-G TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
5320266 TATG TATG TATG TATG TA-G TATG TATG TATG TATG TCTG TA-G TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
5320312 TATG TATG TATG TATG TATG TATG TATG GATG TATG TATG -ATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5320359 TATG TATG TATG TATG TATG TATG TA-G TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5320406 TATG TATG TATG TATG TATG TA-G TATG TATG TATG TATG TATG T-TG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
5320452 TGTG TATG TATG TATG TATG TA-- TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5320498 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5320546 TTATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 -TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5320595 TA-G TATG --TG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5320640 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5320688 TATG TA-- TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5320734 TATG TATG TATG TA-G TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5320781 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5320829 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5320877 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5320925 TATG TATG TATG TATG TATG TATG TTATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG -TATG TATG TATG TATG TATG TATG
*
5320974 TATG TATG TATG TATG TATG TATG TATG TATG TCTG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5321022 TATG TATG TATG TATG TA-G TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5321069 TATG TATG --TG TATG TATG --TG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5321113 --TG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5321159 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5321207 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
5321255 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TA
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TA
5321297 ATAAAGTATA
Statistics
Matches: 3398, Mismatches: 42, Indels: 224
0.93 0.01 0.06
Matches are distributed among these distances:
2 41 0.01
3 166 0.05
4 3142 0.92
5 49 0.01
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:5321781 original size:11 final size:13
Alignment explanation
Indices: 5321752--5321835 Score: 54
Period size: 13 Copynumber: 6.8 Consensus size: 13
5321742 ATAGTATATG
5321752 TATATATGTAAAC
1 TATATATGTAAAC
5321765 TATATATGT-AAC
1 TATATATGTAAAC
*
5321777 T-TATA-GTACA-
1 TATATATGTAAAC
* * *
5321787 TGTATGTATAAAC
1 TATATATGTAAAC
**
5321800 T-TATA-GTATATG
1 TATATATGTA-AAC
*
5321812 TATAAATGTAAAC
1 TATATATGTAAAC
5321825 TATATATGTAA
1 TATATATGTAA
5321836 CTTATAGTAC
Statistics
Matches: 52, Mismatches: 12, Indels: 14
0.67 0.15 0.18
Matches are distributed among these distances:
10 3 0.06
11 10 0.19
12 12 0.23
13 24 0.46
14 3 0.06
ACGTcount: A:0.43, C:0.06, G:0.11, T:0.40
Consensus pattern (13 bp):
TATATATGTAAAC
Found at i:5321782 original size:37 final size:37
Alignment explanation
Indices: 5321729--5321851 Score: 121
Period size: 37 Copynumber: 3.7 Consensus size: 37
5321719 ACAATAGTTA
* *
5321729 ATATATGTAACCTATAGTATATGTATATATGTAAACT
1 ATATATGTAACTTATAGTACATGTATATATGTAAACT
*
5321766 ATATATGTAACTTATAGTACATGTATGTA--TAAACT
1 ATATATGTAACTTATAGTACATGTATATATGTAAACT
5321801 -TATA-GT-A--TAT-GT--A--TA-A-ATGTAAACT
1 ATATATGTAACTTATAGTACATGTATATATGTAAACT
5321826 ATATATGTAACTTATAGTACATGTAT
1 ATATATGTAACTTATAGTACATGTAT
5321852 GTATATTAGT
Statistics
Matches: 69, Mismatches: 4, Indels: 27
0.69 0.04 0.27
Matches are distributed among these distances:
23 1 0.01
25 8 0.12
26 4 0.06
27 3 0.04
28 1 0.01
29 2 0.03
30 6 0.09
31 2 0.03
32 1 0.01
33 3 0.04
34 4 0.06
35 8 0.12
37 26 0.38
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.41
Consensus pattern (37 bp):
ATATATGTAACTTATAGTACATGTATATATGTAAACT
Found at i:5321821 original size:60 final size:60
Alignment explanation
Indices: 5321741--5321856 Score: 223
Period size: 60 Copynumber: 1.9 Consensus size: 60
5321731 ATATGTAACC
*
5321741 TATAGTATATGTATATATGTAAACTATATATGTAACTTATAGTACATGTATGTATAAACT
1 TATAGTATATGTATAAATGTAAACTATATATGTAACTTATAGTACATGTATGTATAAACT
5321801 TATAGTATATGTATAAATGTAAACTATATATGTAACTTATAGTACATGTATGTATA
1 TATAGTATATGTATAAATGTAAACTATATATGTAACTTATAGTACATGTATGTATA
5321857 TTAGTGTACT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.41, C:0.06, G:0.12, T:0.41
Consensus pattern (60 bp):
TATAGTATATGTATAAATGTAAACTATATATGTAACTTATAGTACATGTATGTATAAACT
Found at i:5321891 original size:21 final size:20
Alignment explanation
Indices: 5321867--5321942 Score: 66
Period size: 21 Copynumber: 3.6 Consensus size: 20
5321857 TTAGTGTACT
5321867 ATATAGTTTATACTTTATAAC
1 ATATAGTTTATA-TTTATAAC
*
5321888 ATATAGTATATAATTTATAA-
1 ATATAGTTTAT-ATTTATAAC
* *
5321908 ACTATAG-TTATATTAATGTAC
1 A-TATAGTTTATATTTAT-AAC
5321929 TATATAGTTTATAT
1 -ATATAGTTTATAT
5321943 GTTAATTATC
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
19 5 0.11
20 5 0.11
21 27 0.60
22 8 0.18
ACGTcount: A:0.41, C:0.05, G:0.07, T:0.47
Consensus pattern (20 bp):
ATATAGTTTATATTTATAAC
Found at i:5321992 original size:31 final size:31
Alignment explanation
Indices: 5321954--5322099 Score: 115
Period size: 31 Copynumber: 4.6 Consensus size: 31
5321944 TTAATTATCT
5321954 TAACTATAATTTATATTAATATATAATGTTTA
1 TAACTATAATTTATATTAATATATAAT-TTTA
* * *
5321986 -AACTAT-A-CTATATTAATA-GTAATTATA
1 TAACTATAATTTATATTAATATATAATTTTA
* *
5322013 TTAACTATAGTTTATAAACTATACTATATAA-TTTA
1 -TAACTATAATTTAT--A-T-TAATATATAATTTTA
*
5322048 TAACATATAGTTTATATTAATAT-TAATTTTA
1 TAAC-TATAATTTATATTAATATATAATTTTA
*
5322079 TATACTATATTTTATATTAAT
1 TA-ACTATAATTTATATTAAT
5322100 TTTAATTACA
Statistics
Matches: 92, Mismatches: 10, Indels: 25
0.72 0.08 0.20
Matches are distributed among these distances:
27 3 0.03
28 4 0.04
29 16 0.17
30 4 0.04
31 35 0.38
32 3 0.03
33 2 0.02
34 5 0.05
35 17 0.18
36 3 0.03
ACGTcount: A:0.43, C:0.05, G:0.03, T:0.49
Consensus pattern (31 bp):
TAACTATAATTTATATTAATATATAATTTTA
Found at i:5322042 original size:14 final size:14
Alignment explanation
Indices: 5321984--5322043 Score: 50
Period size: 14 Copynumber: 4.2 Consensus size: 14
5321974 ATATAATGTT
5321984 TAAACTATACTATA
1 TAAACTATACTATA
* *
5321998 TTAA-TAGTAATTATA
1 TAAACTA-T-ACTATA
* * *
5322013 TTAACTATAGTTTA
1 TAAACTATACTATA
5322027 TAAACTATACTATA
1 TAAACTATACTATA
5322041 TAA
1 TAA
5322044 TTTATAACAT
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
13 2 0.06
14 22 0.61
15 10 0.28
16 2 0.06
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (14 bp):
TAAACTATACTATA
Done.