genome.fa.s8023.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008023.1 Hibiscus syriacus cultivar Beakdansim tig00110496_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  214807

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3369--3397	13	2.3	13	94	5	51	44	0	31	24	1.54
10000--10105	35	3.0	35	84	1	140	27	34	4	33	1.78
19485--19536	21	2.6	20	87	6	70	40	11	5	42	1.65
20060--20126	33	2.1	33	86	13	95	19	23	0	56	1.42
22698--22741	23	2.0	22	82	13	54	34	0	36	29	1.58
22743--22779	14	2.7	14	91	4	58	32	0	45	21	1.52
24808--24864	28	2.1	26	83	6	69	59	15	15	8	1.59
33464--33506	23	1.9	21	81	13	50	32	18	11	37	1.87
36401--36515	48	2.4	48	98	0	221	51	0	20	27	1.48
37863--37907	23	2.0	23	83	16	58	53	11	6	28	1.61
43082--43161	11	6.8	11	70	23	56	28	2	37	31	1.71
43082--43149	35	1.9	36	90	3	111	27	2	36	32	1.72
43082--43161	36	2.3	35	86	2	115	28	2	37	31	1.71
45538--45617	36	2.2	36	86	2	117	30	37	3	28	1.75
51090--51177	35	2.5	36	90	1	142	30	37	3	28	1.74
54801--54843	23	1.9	21	81	13	50	32	18	13	34	1.90
73200--73398	105	1.9	105	93	0	344	26	21	18	34	1.96
84645--84677	6	5.7	6	89	3	50	57	0	33	9	1.30
86066--86098	14	2.4	14	90	5	50	27	0	48	24	1.51
87927--87956	13	2.4	13	94	5	53	26	30	0	43	1.55
91699--91747	19	2.5	20	90	3	73	44	6	14	34	1.70
94899--94940	17	2.5	16	85	11	57	2	16	0	80	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94911--94940	16	1.9	16	93	6	53	0	16	0	83	0.65
95135--95195	32	1.9	33	84	15	85	57	0	24	18	1.40
95773--95821	19	2.5	20	83	3	64	42	6	16	34	1.73
96529--96568	20	2.0	21	85	5	55	52	7	17	22	1.69
99521--99554	2	17.0	2	100	0	68	50	0	0	50	1.00
112741--112783	23	1.9	21	81	13	50	34	13	18	32	1.90
120863--120906	22	2.0	22	86	4	61	13	15	6	63	1.49
120990--121040	25	2.0	25	100	0	102	21	15	19	43	1.88
125244--125303	10	6.2	9	73	19	50	78	3	16	1	0.97
125252--125303	27	1.9	27	88	0	77	76	3	17	1	1.02
130580--130619	19	2.0	20	90	4	64	20	15	0	65	1.28
130576--130622	19	2.6	18	83	12	60	19	14	0	65	1.26
131434--131499	20	3.6	19	84	13	77	33	12	12	42	1.79
131455--131525	17	4.1	17	81	5	72	36	14	7	42	1.72
134378--134432	24	2.3	25	81	6	60	27	21	18	32	1.96
137183--137231	19	2.5	20	83	6	57	73	12	14	0	1.10
137197--137240	6	7.2	6	82	12	54	77	4	18	0	0.94
137197--137240	11	3.6	12	82	14	54	77	4	18	0	0.94
140509--140619	35	3.2	35	77	2	107	27	34	3	34	1.75
141009--141049	19	2.3	17	87	8	55	78	4	12	4	1.07
144391--144501	35	3.2	35	81	2	125	27	35	3	33	1.75
149385--149439	24	2.3	25	81	6	60	27	21	18	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150601--150641	22	1.9	22	85	5	57	17	14	0	68	1.22
150827--150875	19	2.5	20	83	6	57	73	12	14	0	1.10
150841--150884	6	7.2	6	82	12	54	77	4	18	0	0.94
150841--150884	11	3.6	12	82	14	54	77	4	18	0	0.94
161935--162045	35	3.2	35	77	2	107	27	34	3	34	1.75
165805--165915	35	3.2	35	80	2	116	28	34	3	33	1.75
170146--170189	21	2.0	22	82	4	54	29	4	22	43	1.73
170902--171072	17	9.9	17	82	2	180	40	7	15	36	1.75
172672--172703	15	2.1	16	94	5	57	40	21	6	31	1.78
176763--176856	46	2.0	46	86	8	129	38	18	13	29	1.89
178972--179022	25	2.0	25	100	0	102	43	19	15	21	1.88
179687--179727	22	1.9	21	85	5	55	58	4	0	36	1.20
181313--181351	15	2.5	15	87	4	51	15	12	5	66	1.41
181709--181764	16	3.4	16	92	5	85	80	8	10	0	0.91
181698--181737	20	2.1	19	90	9	64	90	5	5	0	0.57
181707--181764	18	3.3	18	83	9	75	81	8	10	0	0.89
187521--187560	17	2.4	17	86	0	53	22	25	20	32	1.98
191477--191570	46	2.0	46	86	8	129	38	18	13	29	1.89
193688--193738	25	2.0	25	100	0	102	43	19	15	21	1.88
196423--196447	9	2.8	9	100	0	50	92	8	0	0	0.40
196440--196477	14	2.6	14	95	4	67	81	7	10	0	0.87
196431--196472	13	3.4	12	81	12	50	83	7	9	0	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
196454--196491	20	1.9	20	88	0	58	78	10	10	0	0.95
202242--202281	17	2.4	17	86	0	53	22	25	20	32	1.98
213400--213537	17	8.1	17	77	6	118	40	7	14	37	1.74
214047--214093	2	24.0	2	95	4	87	51	0	0	48	1.00

Tables:   1

The End!