Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008024.1 Hibiscus syriacus cultivar Beakdansim tig00110499_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1023309
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 2 of 4
Found at i:408552 original size:8 final size:8
Alignment explanation
Indices: 408494--408572 Score: 69
Period size: 8 Copynumber: 10.2 Consensus size: 8
408484 GAAAAAAATG
*
408494 AAAATGAA
1 AAAAAGAA
408502 AAAAATGAA
1 AAAAA-GAA
408511 AAAAA-AA
1 AAAAAGAA
*
408518 AAAATG--
1 AAAAAGAA
408524 AAAAAGAA
1 AAAAAGAA
408532 AAAAATGAA
1 AAAAA-GAA
*
408541 AAAAAGAG
1 AAAAAGAA
408549 AAAAA-AA
1 AAAAAGAA
*
408556 AAGAA-AA
1 AAAAAGAA
408563 AAAAAGAA
1 AAAAAGAA
408571 AA
1 AA
408573 GAAAAAGAGG
Statistics
Matches: 58, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
6 5 0.09
7 17 0.29
8 20 0.34
9 16 0.28
ACGTcount: A:0.84, C:0.00, G:0.11, T:0.05
Consensus pattern (8 bp):
AAAAAGAA
Found at i:408596 original size:1 final size:1
Alignment explanation
Indices: 408509--408578 Score: 50
Period size: 1 Copynumber: 70.0 Consensus size: 1
408499 GAAAAAAATG
** * ** * * * * *
408509 AAAAAAAAAAAAATGAAAAAGAAAAAAATGAAAAAAAGAGAAAAAAAAAGAAAAAAAAAGAAAAG
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
408574 AAAAA
1 AAAAA
408579 GAGGGTTCGA
Statistics
Matches: 51, Mismatches: 18, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 51 1.00
ACGTcount: A:0.86, C:0.00, G:0.11, T:0.03
Consensus pattern (1 bp):
A
Found at i:409740 original size:105 final size:104
Alignment explanation
Indices: 409501--409804 Score: 385
Period size: 105 Copynumber: 2.9 Consensus size: 104
409491 CAACAACTAT
* *
409501 AATTCACCCCAGAAGTAGGTGAATCAACATTTCCAGAAGAGTTCATAATGAGAAGAACTCGT-AT
1 AATTCACCCCAGAAGGAGGTGAATCAACATTT-CAGAAGAGTTCATAATGAGAAGAACTCATCAT
* *
409565 AAAGGTGAAAGTTCCTAATGAGAAGAGCATGTTCCTTTCA
65 AAAGGAGAAAGTTCCTAATGAGAAGAGCATATTCCTTTCA
* * * *
409605 AATTCACCCCAGAAGTAGGTGAATCAACATTTCAAAAAGAGTTCATAATGGGAATAACTCATCAT
1 AATTCACCCCAGAAGGAGGTGAATCAACATTTC-AGAAGAGTTCATAATGAGAAGAACTCATCAT
** * * *
409670 AAAGGAGAAAGTTTGTAATGAGAATAGCCTATTCCTTTTA
65 AAAGGAGAAAGTTCCTAATGAGAAGAGCATATTCCTTTCA
* * *
409710 AATTCATCCTAGGAGGAGGTGAATCAACATTTTCAGAAGAGTTCATAATGAGAAGAACTCATCCA
1 AATTCACCCCAGAAGGAGGTGAATCAACA-TTTCAGAAGAGTTCATAATGAGAAGAACTCAT-C-
*
409775 ATAAAGGAGAAGAAGTTCATAATGAGAAGA
63 ATAAAGGAG-A-AAGTTCCTAATGAGAAGA
409805 ACTTGTTCAA
Statistics
Matches: 172, Mismatches: 21, Indels: 9
0.85 0.10 0.04
Matches are distributed among these distances:
103 1 0.01
104 56 0.33
105 85 0.49
106 5 0.03
107 9 0.05
108 1 0.01
109 15 0.09
ACGTcount: A:0.40, C:0.15, G:0.20, T:0.25
Consensus pattern (104 bp):
AATTCACCCCAGAAGGAGGTGAATCAACATTTCAGAAGAGTTCATAATGAGAAGAACTCATCATA
AAGGAGAAAGTTCCTAATGAGAAGAGCATATTCCTTTCA
Found at i:409812 original size:20 final size:19
Alignment explanation
Indices: 409750--409813 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 19
409740 TTTCAGAAGA
409750 GTTCATAATGAGAAGAACT
1 GTTCATAATGAGAAGAACT
* * *
409769 CATCCAATAAAGGAGAAGAA--
1 -GTTC-AT-AATGAGAAGAACT
409789 GTTCATAATGAGAAGAACTT
1 GTTCATAATGAGAAGAAC-T
409809 GTTCA
1 GTTCA
409814 ACCTTAGCTC
Statistics
Matches: 33, Mismatches: 6, Indels: 10
0.67 0.12 0.20
Matches are distributed among these distances:
17 10 0.30
18 2 0.06
19 2 0.06
20 7 0.21
21 2 0.06
22 10 0.30
ACGTcount: A:0.44, C:0.12, G:0.20, T:0.23
Consensus pattern (19 bp):
GTTCATAATGAGAAGAACT
Found at i:414227 original size:86 final size:89
Alignment explanation
Indices: 414121--414294 Score: 255
Period size: 90 Copynumber: 2.0 Consensus size: 89
414111 AAATCTTGAA
* * *
414121 TATTTAATTTCAATTAATT-AA-AT-ATTTATTTAATTTGAAATAATAAAATCCCTAATATGATT
1 TATTAAATTTCAATTAATTAAATATAATTTAATTAATTTGAAATAATAAAAACCCTAATATGATT
*
414183 AGGGTAACTTGGATATAAAAGGAT
66 AGGGTAACTTAGATATAAAAGGAT
*
414207 TATTAAATTTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCTTAATATGAT
1 TATTAAATTTCAATTAATTAAATATA-ATTTAATTAATTTGAAATAATAAAAACCCTAATATGAT
* *
414272 TTGGGTAACTTAGCTATAAAAGG
65 TAGGGTAACTTAGATATAAAAGG
414295 GTGTGTTAGG
Statistics
Matches: 77, Mismatches: 7, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
86 18 0.23
87 2 0.03
88 2 0.03
90 55 0.71
ACGTcount: A:0.44, C:0.06, G:0.10, T:0.40
Consensus pattern (89 bp):
TATTAAATTTCAATTAATTAAATATAATTTAATTAATTTGAAATAATAAAAACCCTAATATGATT
AGGGTAACTTAGATATAAAAGGAT
Found at i:432865 original size:20 final size:20
Alignment explanation
Indices: 432840--432886 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
432830 TATGGTATTG
*
432840 TGAGCTATGTTTGCATGTGA
1 TGAGCTATGTTTGCATGTCA
432860 TGAGCTATGTTTGCATGTCA
1 TGAGCTATGTTTGCATGTCA
432880 TGAGCTA
1 TGAGCTA
432887 AATATATCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.21, C:0.13, G:0.28, T:0.38
Consensus pattern (20 bp):
TGAGCTATGTTTGCATGTCA
Found at i:437076 original size:17 final size:16
Alignment explanation
Indices: 437042--437081 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
437032 TATGAAAGAC
*
437042 ATGATAAAATAAGCAT
1 ATGATAAAATAAGAAT
*
437058 ATGATGAAAATAATAAT
1 ATGAT-AAAATAAGAAT
437075 ATGATAA
1 ATGATAA
437082 TTTATACTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.57, C:0.03, G:0.12, T:0.28
Consensus pattern (16 bp):
ATGATAAAATAAGAAT
Found at i:439388 original size:20 final size:21
Alignment explanation
Indices: 439337--439388 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
439327 CAAATGTCAC
* *
439337 TCAACAAGAAAGTACACCCAA
1 TCAACAAGATACTACACCCAA
*
439358 GCAA-AAGGATACTA-ACCCAA
1 TCAACAA-GATACTACACCCAA
439378 TCAACAAGATA
1 TCAACAAGATA
439389 TGGTACCCGA
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
20 15 0.60
21 10 0.40
ACGTcount: A:0.52, C:0.25, G:0.12, T:0.12
Consensus pattern (21 bp):
TCAACAAGATACTACACCCAA
Found at i:442459 original size:22 final size:21
Alignment explanation
Indices: 442423--442464 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
442413 TATCGATACT
*
442423 GAAGAGAGTATCGATACCATA
1 GAAGAGAATATCGATACCATA
442444 GAAGAGAAATATCGATACCAT
1 GAAGAG-AATATCGATACCAT
442465 TCAGTCTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.45, C:0.14, G:0.21, T:0.19
Consensus pattern (21 bp):
GAAGAGAATATCGATACCATA
Found at i:443305 original size:54 final size:54
Alignment explanation
Indices: 443157--443418 Score: 303
Period size: 53 Copynumber: 4.9 Consensus size: 54
443147 TGTGTGTACA
* *
443157 ATCGGCACTATGTGTGCAACCCACAAAATACATAATGAGTTTATGAATGACCGT
1 ATCGGCACTATGTGTGCAACCCACGAAATTCATAATGAGTTTATGAATGACCGT
* * * * *
443211 ATCGGTACTCTG-GTGCAACCCACGGAATTCATAATTAGTTTATGAATGACCAT
1 ATCGGCACTATGTGTGCAACCCACGAAATTCATAATGAGTTTATGAATGACCGT
* * * * **
443264 ATCGACACTATTTGTGCAACCAACGAAATTCATACTGAGTTTATGAATGATTGT
1 ATCGGCACTATGTGTGCAACCCACGAAATTCATAATGAGTTTATGAATGACCGT
* * * * * * *
443318 ATCAGCATTATATGTGAAACCCACGAAATTCATAATAAGTTT-TGAATTATCGT
1 ATCGGCACTATGTGTGCAACCCACGAAATTCATAATGAGTTTATGAATGACCGT
* * *
443371 ATCGGCACTATGTGTGCAACCCATGGAATTCATAATGAGTTTGTGAAT
1 ATCGGCACTATGTGTGCAACCCACGAAATTCATAATGAGTTTATGAAT
443419 TTTCATATCG
Statistics
Matches: 171, Mismatches: 35, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
53 88 0.51
54 83 0.49
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (54 bp):
ATCGGCACTATGTGTGCAACCCACGAAATTCATAATGAGTTTATGAATGACCGT
Found at i:443364 original size:107 final size:107
Alignment explanation
Indices: 443157--443418 Score: 310
Period size: 107 Copynumber: 2.4 Consensus size: 107
443147 TGTGTGTACA
* * * * *
443157 ATCGGCACTATGTGTGCAACCCACAAAATACATAATGAGTTTATGAATGACCGTATCGGTACTCT
1 ATCGGCACTATGTGTGCAACCCACGAAATTCATAATGAGTTTATGAATGACCGTATCAGCACTAT
* * *
443222 GGTGCAACCCACGGAATTCATAATTAGTTTATGAATGACCAT
66 GGTGAAACCCACGAAATTCATAATAAGTTTATGAATGACCAT
* * * * ** *
443264 ATCGACACTATTTGTGCAACCAACGAAATTCATACTGAGTTTATGAATGATTGTATCAGCATTAT
1 ATCGGCACTATGTGTGCAACCCACGAAATTCATAATGAGTTTATGAATGACCGTATCAGCACTAT
* * * *
443329 ATGTGAAACCCACGAAATTCATAATAAGTTT-TGAATTATCGT
66 -GGTGAAACCCACGAAATTCATAATAAGTTTATGAATGACCAT
* * *
443371 ATCGGCACTATGTGTGCAACCCATGGAATTCATAATGAGTTTGTGAAT
1 ATCGGCACTATGTGTGCAACCCACGAAATTCATAATGAGTTTATGAAT
443419 TTTCATATCG
Statistics
Matches: 128, Mismatches: 26, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
107 102 0.80
108 26 0.20
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (107 bp):
ATCGGCACTATGTGTGCAACCCACGAAATTCATAATGAGTTTATGAATGACCGTATCAGCACTAT
GGTGAAACCCACGAAATTCATAATAAGTTTATGAATGACCAT
Found at i:449932 original size:54 final size:54
Alignment explanation
Indices: 449673--449919 Score: 323
Period size: 54 Copynumber: 4.6 Consensus size: 54
449663 GTACTATCGG
* * ** *
449673 CACTATGTGTGCAACCCATAGAATTCATAATTAGTTTATGAATGATCGCATTGG
1 CACTATGTGTGCAACCCATGGAATTCATAATGAGTTTATGAATGATCATATTGA
** * * *
449727 CACTATGTGAACAACCCATAGAATTCATAATGAGTTTATGAATGACCATATCGA
1 CACTATGTGTGCAACCCATGGAATTCATAATGAGTTTATGAATGATCATATTGA
* * *
449781 CACTATGTGTGCAACCCATGAAATTCATAATGAGTTTATGAATGATCGTATTAA
1 CACTATGTGTGCAACCCATGGAATTCATAATGAGTTTATGAATGATCATATTGA
* * * *
449835 CACTATGTGTGCAACCCACGAAATTCATAATGAGTTTGTGAATTATCATATTGA
1 CACTATGTGTGCAACCCATGGAATTCATAATGAGTTTATGAATGATCATATTGA
* *
449889 TACTATGTATGCAACCCATGGAATTCATAAT
1 CACTATGTGTGCAACCCATGGAATTCATAAT
449920 TTGTTTGTGA
Statistics
Matches: 168, Mismatches: 25, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 168 1.00
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (54 bp):
CACTATGTGTGCAACCCATGGAATTCATAATGAGTTTATGAATGATCATATTGA
Found at i:453142 original size:33 final size:33
Alignment explanation
Indices: 453091--453162 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 33
453081 TTAAATTTTA
**
453091 TAAA-AAAAAATATTAATTTAACCCATAAAA-TT
1 TAAATAAAAAATAAAAATTTAACCC-TAAAACTT
*
453123 TAAATAAAAAATAAAAATTTAATCCTAAAACTT
1 TAAATAAAAAATAAAAATTTAACCCTAAAACTT
*
453156 TAGATAA
1 TAAATAA
453163 GATATCAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
32 9 0.26
33 25 0.74
ACGTcount: A:0.60, C:0.08, G:0.01, T:0.31
Consensus pattern (33 bp):
TAAATAAAAAATAAAAATTTAACCCTAAAACTT
Found at i:454590 original size:18 final size:18
Alignment explanation
Indices: 454567--454602 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
454557 TTCAATTCAT
454567 TGTGGTCGATATGGAGGA
1 TGTGGTCGATATGGAGGA
454585 TGTGGTCGATATGGAGGA
1 TGTGGTCGATATGGAGGA
454603 CGAGGTCAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.06, G:0.44, T:0.28
Consensus pattern (18 bp):
TGTGGTCGATATGGAGGA
Found at i:454609 original size:18 final size:18
Alignment explanation
Indices: 454570--454609 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
454560 AATTCATTGT
* *
454570 GGTCGATATGGAGGATGT
1 GGTCGATATGGAGGACGA
454588 GGTCGATATGGAGGACGA
1 GGTCGATATGGAGGACGA
454606 GGTC
1 GGTC
454610 AAGGTCATGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.23, C:0.10, G:0.45, T:0.23
Consensus pattern (18 bp):
GGTCGATATGGAGGACGA
Found at i:463778 original size:90 final size:89
Alignment explanation
Indices: 463625--463799 Score: 289
Period size: 90 Copynumber: 2.0 Consensus size: 89
463615 CCTAACACAC
*
463625 CCTTTTATATTCAAGTTACCCTAATCATATTAGGGTTTTCATTATTTCAAATTAATTAAATCTAT
1 CCTTTTATATCCAAGTTACCCTAATCATATTAGGGTTTTCATTATTTCAAATTAATTAAATCTAT
*
463690 AATTAATTAATTAGAATTTAATAAT
66 AATTAATTAATT-GAAATTAATAAT
*
463715 CCTTTTATGTCCAAGTTACCCTAATCATATTAGGGATTTT-ATTATTTCAAATTAATTAAATCTA
1 CCTTTTATATCCAAGTTACCCTAATCATATTAGGG-TTTTCATTATTTCAAATTAATTAAATCTA
*
463779 TATTTAATTAATTGAAATTAA
65 TAATTAATTAATTGAAATTAA
463800 ATATTCGAGA
Statistics
Matches: 80, Mismatches: 4, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
89 7 0.09
90 69 0.86
91 4 0.05
ACGTcount: A:0.37, C:0.11, G:0.06, T:0.45
Consensus pattern (89 bp):
CCTTTTATATCCAAGTTACCCTAATCATATTAGGGTTTTCATTATTTCAAATTAATTAAATCTAT
AATTAATTAATTGAAATTAATAAT
Found at i:469807 original size:90 final size:90
Alignment explanation
Indices: 469654--469831 Score: 322
Period size: 90 Copynumber: 2.0 Consensus size: 90
469644 CCTAACACAC
469654 CCTTTTATATCCAAGTTACCCTAATCATATTAGGGTTTTCATTATTTCAAATTAATTAAATCTAT
1 CCTTTTATATCCAAGTTACCCTAATCATATTAGGGTTTTCATTATTTCAAATTAATTAAATCTAT
*
469719 ATTTAATTAATTGGAATTTAATAAT
66 ATTTAATTAATTGGAATTAAATAAT
*
469744 CCTTTTATCTCCAAGTTACCCTAATCATATTAGGGATTTT-ATTATTTCAAATTAATTAAATCTA
1 CCTTTTATATCCAAGTTACCCTAATCATATTAGGG-TTTTCATTATTTCAAATTAATTAAATCTA
469808 TATTTAATTAATTGGAATTAAATA
65 TATTTAATTAATTGGAATTAAATA
469832 TTTGGGATTA
Statistics
Matches: 85, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
90 81 0.95
91 4 0.05
ACGTcount: A:0.36, C:0.12, G:0.07, T:0.45
Consensus pattern (90 bp):
CCTTTTATATCCAAGTTACCCTAATCATATTAGGGTTTTCATTATTTCAAATTAATTAAATCTAT
ATTTAATTAATTGGAATTAAATAAT
Found at i:482528 original size:15 final size:15
Alignment explanation
Indices: 482508--482541 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
482498 TGATGAATTA
482508 TGTTTTGCTTATGAC
1 TGTTTTGCTTATGAC
*
482523 TGTTTTGCTTATTAC
1 TGTTTTGCTTATGAC
482538 TGTT
1 TGTT
482542 CTGCGTACTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.12, C:0.12, G:0.18, T:0.59
Consensus pattern (15 bp):
TGTTTTGCTTATGAC
Found at i:487057 original size:32 final size:32
Alignment explanation
Indices: 487006--487102 Score: 86
Period size: 32 Copynumber: 3.0 Consensus size: 32
486996 TATTAGCAGT
* * * *
487006 GTGTTGTATTTAGAGAATGCATAACAATGTCA
1 GTGTTGTATTCAAATAATGCACAACAATGTCA
** *
487038 GTGTTGTATTCAAATAATGCACAGTAGTGTCA
1 GTGTTGTATTCAAATAATGCACAACAATGTCA
* * * * *
487070 GTGTTGCACTCATATAATGCACAATATTGTCA
1 GTGTTGTATTCAAATAATGCACAACAATGTCA
487102 G
1 G
487103 GGTCTCAATC
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 53 1.00
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (32 bp):
GTGTTGTATTCAAATAATGCACAACAATGTCA
Found at i:491789 original size:32 final size:32
Alignment explanation
Indices: 491733--491843 Score: 159
Period size: 32 Copynumber: 3.5 Consensus size: 32
491723 TTTAGCATAT
* * *
491733 GAGCCAACATAAGGGAGTACCTTGGGGCCTTA
1 GAGCCTACCTAAGGGAGTACCTTGGAGCCTTA
* * *
491765 GAGCTTACCTAATGTAGTACCTTGGAGCCTTA
1 GAGCCTACCTAAGGGAGTACCTTGGAGCCTTA
491797 GAGCCTACCTAAGGGAGTACCTTGGAGCCTTA
1 GAGCCTACCTAAGGGAGTACCTTGGAGCCTTA
*
491829 GAGCCTACCTTAGGG
1 GAGCCTACCTAAGGG
491844 CCTTAAAGCC
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 69 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.23
Consensus pattern (32 bp):
GAGCCTACCTAAGGGAGTACCTTGGAGCCTTA
Found at i:491839 original size:20 final size:20
Alignment explanation
Indices: 491814--491856 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
491804 CCTAAGGGAG
*
491814 TACCTT-GGAGCCTTAGAGCC
1 TACCTTAGG-GCCTTAAAGCC
491834 TACCTTAGGGCCTTAAAGCC
1 TACCTTAGGGCCTTAAAGCC
491854 TAC
1 TAC
491857 TCAATTGTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 19 0.90
21 2 0.10
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (20 bp):
TACCTTAGGGCCTTAAAGCC
Found at i:508520 original size:168 final size:166
Alignment explanation
Indices: 507926--508753 Score: 1380
Period size: 168 Copynumber: 5.0 Consensus size: 166
507916 ATTAATCTTA
* *
507926 AATTTTTTCCATACATTGACAAAAAACTAAATTTGTATTTTTCATCTCAAATTTTCTTCATTCCA
1 AATTTTTTCCATACATTGACCAAAAACTAAGTTTGTATTTTTCATCTCAAATTTTCTTCATT-CA
*
507991 AAA-TAACATGGGGCTTACCAGGCCAATGTCTGCATATTGACTGCTCTAGATGCAGGAA-TAAAA
65 AAACTAACA-GGGGCTTACCAGGCCAATGTCTGCGTATTGACTGCTCTAGATGCAGGAATTAAAA
*
508054 GAAAAAAGTCTCTTTCATCCATTATTTGTATTAGCCTT
129 GAAAAAAGTCTCTTTCATCCATTATTTTTATTAGCCTT
508092 -ATTTTTTCCATACATTGACCAAAAACTAAGTTTGTATTTTTCATCTCAAATTTTCTTCATTCAA
1 AATTTTTTCCATACATTGACCAAAAACTAAGTTTGTATTTTTCATCTCAAATTTTCTTCATTCAA
* *
508156 AACTAACATGGGCTTACCAGGCCAATGTCTGCGTATTGACTGTTCTAGATGCAGGAATTAAAAGA
66 AACTAACAGGGGCTTACCAGGCCAATGTCTGCGTATTGACTGCTCTAGATGCAGGAATTAAAAGA
*
508221 AAAAAG-CATCTTTCATCCATTATTTGTATTAGCCTT
131 AAAAAGTC-TCTTTCATCCATTATTTTTATTAGCCTT
* *
508257 ATTTTTTTCCATACATTGACCAAAAACTAAGTTTATATTTTTCATCTCAAATTTTCTTCATTCAA
1 AATTTTTTCCATACATTGACCAAAAACTAAGTTTGTATTTTTCATCTCAAATTTTCTTCATTCAA
* *
508322 TACTAACATGGGGCTTACCAGGCCAATGTCTGTGTATTGACTGCTCTAGATGCAGGAATTAAAAG
66 AACTAACA-GGGGCTTACCAGGCCAATGTCTGCGTATTGACTGCTCTAGATGCAGGAATTAAAAG
508387 AAAAAAGTCTCTTTCATCCATTATTTTTATTAGCCTT
130 AAAAAAGTCTCTTTCATCCATTATTTTTATTAGCCTT
*
508424 AATTTTTTTCCATACATTGACCAAAAACTAAGTTTGTATTTTTCATCTCAAATTTTCTTTATTCT
1 AA-TTTTTTCCATACATTGACCAAAAACTAAGTTTGTATTTTTCATCTCAAATTTTCTTCATTC-
* * * *
508489 GAAA-TAACACGGGGCTTACCAGGCCAATGTCTACGTATTGACTGCTTTAGATGCATGAATTAAA
64 AAAACTAACA-GGGGCTTACCAGGCCAATGTCTGCGTATTGACTGCTCTAGATGCAGGAATTAAA
508553 AGAAAAAAGTCTCTTTCATCCATTATTTTTATTAGCCTT
128 AGAAAAAAGTCTCTTTCATCCATTATTTTTATTAGCCTT
508592 AATTTTTTCCATACATTGACCAAAAACTAAGTTTGTATTTTTCATCTCAAATTTTCTTCATTCAA
1 AATTTTTTCCATACATTGACCAAAAACTAAGTTTGTATTTTTCATCTCAAATTTTCTTCATTCAA
* *
508657 AACTAACATGGGCTTACCAGGCCAATGTCTGCGTATTGACTGCTCTAGATGCAGAAATTAAAA-A
66 AACTAACAGGGGCTTACCAGGCCAATGTCTGCGTATTGACTGCTCTAGATGCAGGAATTAAAAGA
*
508721 AAAAAGTTTCTTTCATCCATTATTTTTATTAGC
131 AAAAAGTCTCTTTCATCCATTATTTTTATTAGC
508754 GAATAGAAAT
Statistics
Matches: 623, Mismatches: 30, Indels: 19
0.93 0.04 0.03
Matches are distributed among these distances:
164 52 0.08
165 138 0.22
166 122 0.20
167 153 0.25
168 156 0.25
169 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (166 bp):
AATTTTTTCCATACATTGACCAAAAACTAAGTTTGTATTTTTCATCTCAAATTTTCTTCATTCAA
AACTAACAGGGGCTTACCAGGCCAATGTCTGCGTATTGACTGCTCTAGATGCAGGAATTAAAAGA
AAAAAGTCTCTTTCATCCATTATTTTTATTAGCCTT
Found at i:508607 original size:335 final size:331
Alignment explanation
Indices: 507926--508753 Score: 1389
Period size: 335 Copynumber: 2.5 Consensus size: 331
507916 ATTAATCTTA
* *
507926 AATTTTTTCCATACATTGACAAAAAACTAAATTTGTATTTTTCATCTCAAATTTTCTTCATTCCA
1 AATTTTTTCCATACATTGACCAAAAACTAAGTTTGTATTTTTCATCTCAAATTTTCTTCATT-CA
* *
507991 AAATAACATGGGGCTTACCAGGCCAATGTCTGCATATTGACTGCTCTAGATGCAGGAA-TAAAAG
65 AACTAACATGGGGCTTACCAGGCCAATGTCTGCGTATTGACTGCTCTAGATGCAGGAATTAAAAG
*
508055 AAAAAAGTCTCTTTCATCCATTATTTGTATTAGCCTTATTTTTTCCATACATTGACCAAAAACTA
130 AAAAAAGTCTCTTTCATCCATTATTTTTATTAGCCTTATTTTTTCCATACATTGACCAAAAACTA
*
508120 AGTTTGTATTTTTCATCTCAAATTTTCTTCATTCAAAACTAACATGGGCTTACCAGGCCAATGTC
195 AGTTTGTATTTTTCATCTCAAATTTTCTTCATTCAAAACTAACAGGGGCTTACCAGGCCAATGTC
*
508185 TGCGTATTGACTGTTCTAGATGCAGGAATTAAAAGAAAAAAGCATCTTTCATCCATTATTTGTAT
260 TACGTATTGACTGTTCTAGATGCAGGAATTAAAAGAAAAAAGCATCTTTCATCCATTATTTGTAT
508250 TAGCCTT
325 TAGCCTT
* *
508257 ATTTTTTTCCATACATTGACCAAAAACTAAGTTTATATTTTTCATCTCAAATTTTCTTCATTCAA
1 AATTTTTTCCATACATTGACCAAAAACTAAGTTTGTATTTTTCATCTCAAATTTTCTTCATTCAA
*
508322 TACTAACATGGGGCTTACCAGGCCAATGTCTGTGTATTGACTGCTCTAGATGCAGGAATTAAAAG
66 -ACTAACATGGGGCTTACCAGGCCAATGTCTGCGTATTGACTGCTCTAGATGCAGGAATTAAAAG
508387 AAAAAAGTCTCTTTCATCCATTATTTTTATTAGCCTTAATTTTTTTCCATACATTGACCAAAAAC
130 AAAAAAGTCTCTTTCATCCATTATTTTTATTAGCCTT-A-TTTTTTCCATACATTGACCAAAAAC
* *
508452 TAAGTTTGTATTTTTCATCTCAAATTTTCTTTATTCTGAAA-TAACACGGGGCTTACCAGGCCAA
193 TAAGTTTGTATTTTTCATCTCAAATTTTCTTCATTC-AAAACTAACA-GGGGCTTACCAGGCCAA
*
508516 TGTCTACGTATTGACTGCTT-TAGATGCATGAATTAAAAGAAAAAAGTC-TCTTTCATCCATTAT
256 TGTCTACGTATTGACTG-TTCTAGATGCAGGAATTAAAAGAAAAAAG-CATCTTTCATCCATTAT
*
508579 TTTTATTAGCCTT
319 TTGTATTAGCCTT
508592 AATTTTTTCCATACATTGACCAAAAACTAAGTTTGTATTTTTCATCTCAAATTTTCTTCATTCAA
1 AATTTTTTCCATACATTGACCAAAAACTAAGTTTGTATTTTTCATCTCAAATTTTCTTCATTC-A
*
508657 AACTAACAT-GGGCTTACCAGGCCAATGTCTGCGTATTGACTGCTCTAGATGCAGAAATTAAAA-
65 AACTAACATGGGGCTTACCAGGCCAATGTCTGCGTATTGACTGCTCTAGATGCAGGAATTAAAAG
*
508720 AAAAAAGTTTCTTTCATCCATTATTTTTATTAGC
130 AAAAAAGTCTCTTTCATCCATTATTTTTATTAGC
508754 GAATAGAAAT
Statistics
Matches: 469, Mismatches: 19, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
330 3 0.01
331 112 0.24
332 42 0.09
333 34 0.07
334 117 0.25
335 156 0.33
336 5 0.01
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (331 bp):
AATTTTTTCCATACATTGACCAAAAACTAAGTTTGTATTTTTCATCTCAAATTTTCTTCATTCAA
ACTAACATGGGGCTTACCAGGCCAATGTCTGCGTATTGACTGCTCTAGATGCAGGAATTAAAAGA
AAAAAGTCTCTTTCATCCATTATTTTTATTAGCCTTATTTTTTCCATACATTGACCAAAAACTAA
GTTTGTATTTTTCATCTCAAATTTTCTTCATTCAAAACTAACAGGGGCTTACCAGGCCAATGTCT
ACGTATTGACTGTTCTAGATGCAGGAATTAAAAGAAAAAAGCATCTTTCATCCATTATTTGTATT
AGCCTT
Found at i:511603 original size:32 final size:31
Alignment explanation
Indices: 511521--511604 Score: 96
Period size: 32 Copynumber: 2.6 Consensus size: 31
511511 ATAGGAGATA
*
511521 ACCTAAGGGAGTACCTTCGGGCCTTCGAGCCT
1 ACCTAAGGGAGTACCTT-GGGCCTTAGAGCCT
* * *
511553 ACCCAAGGCAGTACCTTGGAGTCTTAGAGCCT
1 ACCTAAGGGAGTACCTTGG-GCCTTAGAGCCT
* *
511585 ACCTAAGGGACTATCTTGGG
1 ACCTAAGGGAGTACCTTGGG
511605 ACCTAAGGGA
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
31 3 0.07
32 40 0.93
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (31 bp):
ACCTAAGGGAGTACCTTGGGCCTTAGAGCCT
Found at i:511610 original size:20 final size:20
Alignment explanation
Indices: 511585--511631 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
511575 CTTAGAGCCT
*
511585 ACCTAAGGGACTATCTTGGG
1 ACCTAAGGGACTACCTTGGG
*
511605 ACCTAAGGGAGTACCTTGGG
1 ACCTAAGGGACTACCTTGGG
*
511625 GCCTAAG
1 ACCTAAG
511632 AGCCTACCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.21
Consensus pattern (20 bp):
ACCTAAGGGACTACCTTGGG
Found at i:518584 original size:32 final size:32
Alignment explanation
Indices: 518543--518648 Score: 108
Period size: 32 Copynumber: 3.3 Consensus size: 32
518533 GTATGCTATT
518543 TTCAGATAATGCACAACAGTGTCAGTGTCGCA
1 TTCAGATAATGCACAACAGTGTCAGTGTCGCA
* * * * *
518575 TTCAGATAATGCAAAACAATGTCAATATTGCA
1 TTCAGATAATGCACAACAGTGTCAGTGTCGCA
* * *
518607 TTCATATAATACACGAA-AGTGTCAAG-GTCGTA
1 TTCAGATAATGCAC-AACAGTGTC-AGTGTCGCA
518639 TTCAGATAAT
1 TTCAGATAAT
518649 CCATAGCAAT
Statistics
Matches: 58, Mismatches: 14, Indels: 4
0.76 0.18 0.05
Matches are distributed among these distances:
32 55 0.95
33 3 0.05
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (32 bp):
TTCAGATAATGCACAACAGTGTCAGTGTCGCA
Found at i:522813 original size:3 final size:3
Alignment explanation
Indices: 522807--522844 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
522797 ATTTATTTAT
522807 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
522845 TAGACTTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:523091 original size:14 final size:15
Alignment explanation
Indices: 523067--523097 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
523057 ATATTATGTA
523067 TTATAAAATTTTAAG
1 TTATAAAATTTTAAG
523082 TTAT-AAATTTTAAG
1 TTATAAAATTTTAAG
523096 TT
1 TT
523098 TTTATGTCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.75
15 4 0.25
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (15 bp):
TTATAAAATTTTAAG
Found at i:524165 original size:22 final size:23
Alignment explanation
Indices: 524137--524180 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
524127 TTTATGATAT
*
524137 TTATTTAATAT-AATAATTAATA
1 TTATTTAATATAAAAAATTAATA
*
524159 TTATTTATTATAAAAAATTAAT
1 TTATTTAATATAAAAAATTAAT
524181 TAGTAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (23 bp):
TTATTTAATATAAAAAATTAATA
Found at i:525230 original size:3 final size:3
Alignment explanation
Indices: 525222--525261 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
525212 TGATTCTAGA
525222 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
525262 GGTATGTCCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:526124 original size:7 final size:6
Alignment explanation
Indices: 526096--526145 Score: 55
Period size: 7 Copynumber: 7.7 Consensus size: 6
526086 ATTAAAGAAT
*
526096 AAAATA AAACATA AAACATA AAAAGTA AAAAGTA AAAATA ATAATA AAAA
1 AAAATA AAA-ATA AAA-ATA AAAA-TA AAAA-TA AAAATA AAAATA AAAA
526146 ACTTGTAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
6 14 0.35
7 26 0.65
ACGTcount: A:0.76, C:0.04, G:0.04, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:526145 original size:20 final size:18
Alignment explanation
Indices: 526088--526146 Score: 55
Period size: 19 Copynumber: 3.0 Consensus size: 18
526078 CATAAGTAAT
*
526088 TAAAGAATAAAATAAAACA
1 TAAA-AATAAAATAAAAAA
*
526107 TAAAACATAAAAAGTAAAAAG
1 TAAAA-AT-AAAA-TAAAAAA
526128 TAAAAATAATAATAAAAAA
1 TAAAAATAA-AATAAAAAA
526147 CTTGTAAAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
18 1 0.03
19 14 0.42
20 8 0.24
21 10 0.30
ACGTcount: A:0.75, C:0.03, G:0.05, T:0.17
Consensus pattern (18 bp):
TAAAAATAAAATAAAAAA
Found at i:526924 original size:33 final size:33
Alignment explanation
Indices: 526887--526951 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
526877 CCTGTTATCG
526887 TTTATT-AACATACTGCTATTCTCCATTATCTTA
1 TTTATTGAA-ATACTGCTATTCTCCATTATCTTA
* **
526920 TTTATTGAATTACTGCTATTCTGTATTATCTT
1 TTTATTGAAATACTGCTATTCTCCATTATCTT
526952 GTTGGCAGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 26 0.93
34 2 0.07
ACGTcount: A:0.25, C:0.17, G:0.06, T:0.52
Consensus pattern (33 bp):
TTTATTGAAATACTGCTATTCTCCATTATCTTA
Found at i:528066 original size:16 final size:16
Alignment explanation
Indices: 528035--528068 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
528025 CTTGCTCCCA
528035 TAAAATTTTATCAATT
1 TAAAATTTTATCAATT
528051 TAAAAGTTTTAT-AATT
1 TAAAA-TTTTATCAATT
528067 TA
1 TA
528069 GGAGTGATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (16 bp):
TAAAATTTTATCAATT
Found at i:533529 original size:21 final size:21
Alignment explanation
Indices: 533497--533567 Score: 90
Period size: 21 Copynumber: 3.4 Consensus size: 21
533487 AAGCAAAAAT
*
533497 GAAGCAAG-GGAAGCAGAGAGA
1 GAAGC-AGCGGAAGCACAGAGA
* *
533518 GCAGCAGCGGAAGAACAGAGA
1 GAAGCAGCGGAAGCACAGAGA
*
533539 GAAGCAACGGAAGCACAGAGA
1 GAAGCAGCGGAAGCACAGAGA
533560 GAAGCAGC
1 GAAGCAGC
533568 ATATCAACAG
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 2 0.05
21 40 0.95
ACGTcount: A:0.45, C:0.17, G:0.38, T:0.00
Consensus pattern (21 bp):
GAAGCAGCGGAAGCACAGAGA
Found at i:533577 original size:42 final size:42
Alignment explanation
Indices: 533497--533578 Score: 101
Period size: 42 Copynumber: 2.0 Consensus size: 42
533487 AAGCAAAAAT
* * * * *
533497 GAAGCAAGGGAAGCAGAGAGAGCAGCAGCGGAAGAACAGAGA
1 GAAGCAACGGAAGCACAGAGAGAAGCAGCAGAACAACAGAGA
* *
533539 GAAGCAACGGAAGCACAGAGAGAAGCAGCATATCAACAGA
1 GAAGCAACGGAAGCACAGAGAGAAGCAGCAGAACAACAGA
533579 AATGTCAAGA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.46, C:0.17, G:0.34, T:0.02
Consensus pattern (42 bp):
GAAGCAACGGAAGCACAGAGAGAAGCAGCAGAACAACAGAGA
Found at i:534018 original size:44 final size:44
Alignment explanation
Indices: 533967--534124 Score: 201
Period size: 44 Copynumber: 3.6 Consensus size: 44
533957 TGTTTAGATA
* *
533967 TTTTGCGGCGTTTGTATCCCAAAAACTCCACTATATACCAGACC
1 TTTTGCGGCGTTTGTATCCAAAAAACTCCGCTATATACCAGACC
* * *
534011 TTTTGCGGCGTTTGTATCTAAAAAACGCCGCTATATACAAGACC
1 TTTTGCGGCGTTTGTATCCAAAAAACTCCGCTATATACCAGACC
* * * *
534055 TTTTGCGGCATTTGTATCCAAAAAA-TGCCGCTATATATCATACA
1 TTTTGCGGCGTTTGTATCCAAAAAACT-CCGCTATATACCAGACC
* *
534099 TGTTGCGGCTTTTGTATCCAAAAAAC
1 TTTTGCGGCGTTTGTATCCAAAAAAC
534125 GTAGCTAAAT
Statistics
Matches: 98, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
44 98 1.00
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (44 bp):
TTTTGCGGCGTTTGTATCCAAAAAACTCCGCTATATACCAGACC
Found at i:538334 original size:77 final size:78
Alignment explanation
Indices: 538186--538334 Score: 180
Period size: 77 Copynumber: 1.9 Consensus size: 78
538176 AGTAAGTAAG
*
538186 CATTAAAAGAATGTAATTTAGATTACAACTCTTTTAATTGATATATAATTCGGAATAATTAAATA
1 CATTAAAAGAATGTAATTCAGATTACAACTCTTTTAATTGATATATAATTCGGAATAATTAAATA
*
538251 AGTTTTAAATAAA
66 AATTTTAAATAAA
* * * * *
538264 CATT-AAAGATTGTAATTCAGATTATAAGTC-TTTAA-TGTATATTTAATT-TGAATTAATTAAA
1 CATTAAAAGAATGTAATTCAGATTACAACTCTTTTAATTG-ATATATAATTCGGAA-TAATTAAA
538325 TAATATTTTA
64 TAA-ATTTTA
538335 TTTATTAATT
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
75 5 0.08
76 25 0.41
77 27 0.44
78 4 0.07
ACGTcount: A:0.44, C:0.05, G:0.09, T:0.42
Consensus pattern (78 bp):
CATTAAAAGAATGTAATTCAGATTACAACTCTTTTAATTGATATATAATTCGGAATAATTAAATA
AATTTTAAATAAA
Found at i:539807 original size:45 final size:44
Alignment explanation
Indices: 539737--539861 Score: 135
Period size: 46 Copynumber: 2.8 Consensus size: 44
539727 CGGTGCACTA
*
539737 AGAGTGTATCGATGCATCAAGTGCATTCGATGTTTCA-AAATAGCC
1 AGAGTGCATCGATGCATCAA-TGCATTCGATGTTTCATAAA-AGCC
* *
539782 AGAGTGCATCGATGTATCATATGCATTCGATGTTTTCATAAAATCC
1 AGAGTGCATCGATGCATCA-ATGCATTCGATG-TTTCATAAAAGCC
** * *
539828 TCACTGCATCGATGCATGAAATGCATTCGATGTT
1 AGAGTGCATCGATGCAT-CAATGCATTCGATGTT
539862 CAATTTAATT
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
45 30 0.44
46 34 0.50
47 4 0.06
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (44 bp):
AGAGTGCATCGATGCATCAATGCATTCGATGTTTCATAAAAGCC
Found at i:540977 original size:21 final size:21
Alignment explanation
Indices: 540953--540997 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
540943 CCAGAAAAGG
*
540953 AGGAGGAGCACGAGAAGAGCT
1 AGGAGCAGCACGAGAAGAGCT
* * *
540974 AGGATCAGCTCGTGAAGAGCT
1 AGGAGCAGCACGAGAAGAGCT
540995 AGG
1 AGG
540998 TCCCCGGGGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.16, G:0.40, T:0.11
Consensus pattern (21 bp):
AGGAGCAGCACGAGAAGAGCT
Found at i:546997 original size:59 final size:59
Alignment explanation
Indices: 546900--547315 Score: 595
Period size: 59 Copynumber: 7.1 Consensus size: 59
546890 TTTCTCTAAA
* * *
546900 ATGAGAGGTTAAAAGCCTAATTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGGTAG
1 ATGAAAGGTTAAATGCCTAATTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAG
*
546959 ATGAAAGGTTAAATGCCTAATTGTGCATTTGGAAGAAAGGTGCCAATAATGCAAGTTAG
1 ATGAAAGGTTAAATGCCTAATTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAG
* * *
547018 ATGAAAGGTTAAATG-GTAATTATGCATTTGGCAGAAAGGTGCCAATAATGTAAGTTAG
1 ATGAAAGGTTAAATGCCTAATTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAG
* * ** *
547076 ATGAAAGGTTAAATGTCTAATTGTGCATTT-GCATAAAGGTGTTAATAGTGCAAGTTAG
1 ATGAAAGGTTAAATGCCTAATTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAG
* * *
547134 ATGAAAGGTTAAATGCCTAATTGTGCATTTAGAAGAAAGGTTCCAATAATGCAAGTTAG
1 ATGAAAGGTTAAATGCCTAATTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAG
* * *
547193 ATGAAAGGTTAAATTCCTAAATGTGCATTTGGCAGAAAGGTTCCAATAATGCAAGTTAG
1 ATGAAAGGTTAAATGCCTAATTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAG
* * * * * *
547252 ATGAAATGTTAAATTCCTAA-CGTGCATTTGGCAGAAAAGTGCCATTAATGCAAGTTGG
1 ATGAAAGGTTAAATGCCTAATTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAG
547310 ATGAAA
1 ATGAAA
547316 AACAATGTAT
Statistics
Matches: 323, Mismatches: 32, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
58 145 0.45
59 178 0.55
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.29
Consensus pattern (59 bp):
ATGAAAGGTTAAATGCCTAATTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAG
Found at i:547023 original size:27 final size:27
Alignment explanation
Indices: 546934--547026 Score: 71
Period size: 27 Copynumber: 3.3 Consensus size: 27
546924 GCATTTGGCA
*
546934 GAAAGGTGCCAATAATGCAAGGTAGAT
1 GAAAGGTGCCAATAATGCAAGTTAGAT
** * * *
546961 GAAAGGTTAAATGCCTAATTGTGC-ATTTGGAA
1 GAAAGG-----TGCC-AATAATGCAAGTTAGAT
546993 GAAAGGTGCCAATAATGCAAGTTAGAT
1 GAAAGGTGCCAATAATGCAAGTTAGAT
547020 GAAAGGT
1 GAAAGGT
547027 TAAATGGTAA
Statistics
Matches: 48, Mismatches: 11, Indels: 14
0.66 0.15 0.19
Matches are distributed among these distances:
26 6 0.12
27 22 0.46
32 14 0.29
33 6 0.12
ACGTcount: A:0.39, C:0.10, G:0.28, T:0.24
Consensus pattern (27 bp):
GAAAGGTGCCAATAATGCAAGTTAGAT
Found at i:547155 original size:117 final size:118
Alignment explanation
Indices: 546900--547315 Score: 581
Period size: 117 Copynumber: 3.6 Consensus size: 118
546890 TTTCTCTAAA
* * *
546900 ATGAGAGGTTAAAAGCCTAATTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGGTAGATGAAA
1 ATGAAAGGTTAAATGCCTAATTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAA
* * *
546965 GGTTAAATGCCTAATTGTGCATTTGGAAGAAAGGTGCCAATAATGCAAGTTAG
66 GGTTAAATGTCTAATTGTGCATTTGGCAGAAAGGTGTCAATAATGCAAGTTAG
* * *
547018 ATGAAAGGTTAAATG-GTAATTATGCATTTGGCAGAAAGGTGCCAATAATGTAAGTTAGATGAAA
1 ATGAAAGGTTAAATGCCTAATTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAA
* * *
547082 GGTTAAATGTCTAATTGTGCATTT-GCATAAAGGTGTTAATAGTGCAAGTTAG
66 GGTTAAATGTCTAATTGTGCATTTGGCAGAAAGGTGTCAATAATGCAAGTTAG
* * *
547134 ATGAAAGGTTAAATGCCTAATTGTGCATTTAGAAGAAAGGTTCCAATAATGCAAGTTAGATGAAA
1 ATGAAAGGTTAAATGCCTAATTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAA
*
547199 GGTTAAAT-TCCTAAATGTGCATTTGGCAGAAAGGT-TCCAATAATGCAAGTTAG
66 GGTTAAATGT-CTAATTGTGCATTTGGCAGAAAGGTGT-CAATAATGCAAGTTAG
* * * * * *
547252 ATGAAATGTTAAATTCCTAA-CGTGCATTTGGCAGAAAAGTGCCATTAATGCAAGTTGGATGAAA
1 ATGAAAGGTTAAATGCCTAATTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAA
547316 AACAATGTAT
Statistics
Matches: 263, Mismatches: 31, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
116 39 0.15
117 170 0.65
118 54 0.21
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.29
Consensus pattern (118 bp):
ATGAAAGGTTAAATGCCTAATTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAA
GGTTAAATGTCTAATTGTGCATTTGGCAGAAAGGTGTCAATAATGCAAGTTAG
Found at i:553898 original size:59 final size:59
Alignment explanation
Indices: 553827--554299 Score: 687
Period size: 59 Copynumber: 8.0 Consensus size: 59
553817 TTTCTCTAAA
* * * * *
553827 ATGAAAGGTTAAATGCCTAATTATGCATTTAGAAGAAAGGTGCCAATAATGTAAGTTAG
1 ATGAAAGGTTAAATGCCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAG
*
553886 ATGAAAGGTTAAATACCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAG
1 ATGAAAGGTTAAATGCCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAG
* * *
553945 ATGAAAAGTTCAATGCCTAACTGTGCATTTGGAAGAAAGGTGCCAATAATGCAAGTTAG
1 ATGAAAGGTTAAATGCCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAG
* ** * * *
554004 ATGAAATGTTAAATGTATAATTGTGTATTTGGCAGAAAGGTGTCAATAATGCAAGTTAG
1 ATGAAAGGTTAAATGCCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAG
* *
554063 ATGAAAGGTTAAATGCCTAACTGTGAATTTGGCAGAAAGGTG-CAATAATGCAATTTAG
1 ATGAAAGGTTAAATGCCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAG
* * * * *
554121 ATGAAAGGTTAAATGCCTAACTATGCATTTGGTATAAAGGAGCCAATAATTCAAGTTAG
1 ATGAAAGGTTAAATGCCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAG
* *
554180 ATGAAAAGTTAAATGCCTAACTGTGCATTTGGAAGAAAGGTGCCAATAATGCAAGTTAG
1 ATGAAAGGTTAAATGCCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAG
* * * *
554239 ATGAAAGGTTAAATGCCTAAATGTGCATTTGGCATAAAGGTGCCACTAATACAAGTTAG
1 ATGAAAGGTTAAATGCCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAG
554298 AT
1 AT
554300 AAAAATAGTG
Statistics
Matches: 370, Mismatches: 43, Indels: 2
0.89 0.10 0.00
Matches are distributed among these distances:
58 52 0.14
59 318 0.86
ACGTcount: A:0.38, C:0.11, G:0.23, T:0.28
Consensus pattern (59 bp):
ATGAAAGGTTAAATGCCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAG
Found at i:554239 original size:235 final size:236
Alignment explanation
Indices: 553827--554299 Score: 732
Period size: 235 Copynumber: 2.0 Consensus size: 236
553817 TTTCTCTAAA
* * *
553827 ATGAAAGGTTAAATGCCTAATTATGCATTTAGAAGAAAGGTGCCAATAATGTAAGTTAGATGAAA
1 ATGAAAGGTTAAATGCCTAACTATGAATTTAGAAGAAAGGTGCCAATAATGCAAGTTAGATGAAA
* * *
553892 GGTTAAATACCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAAAGTTCA
66 GGTTAAATACCTAACTATGCATTTGGCAGAAAGGAGCCAATAATGCAAGTTAGATGAAAAGTTAA
* *
553957 ATGCCTAACTGTGCATTTGGAAGAAAGGTGCCAATAATGCAAGTTAGATGAAATGTTAAATGTAT
131 ATGCCTAACTGTGCATTTGGAAGAAAGGTGCCAATAATGCAAGTTAGATGAAAGGTTAAATGCAT
* * * *
554022 AATTGTGTATTTGGCAGAAAGGTGTCAATAATGCAAGTTAG
196 AAATGTGCATTTGGCAGAAAGGTGCCAATAATACAAGTTAG
* * * *
554063 ATGAAAGGTTAAATGCCTAACTGTGAATTTGGCAGAAAGGTG-CAATAATGCAATTTAGATGAAA
1 ATGAAAGGTTAAATGCCTAACTATGAATTTAGAAGAAAGGTGCCAATAATGCAAGTTAGATGAAA
* * * *
554127 GGTTAAATGCCTAACTATGCATTTGGTATAAAGGAGCCAATAATTCAAGTTAGATGAAAAGTTAA
66 GGTTAAATACCTAACTATGCATTTGGCAGAAAGGAGCCAATAATGCAAGTTAGATGAAAAGTTAA
*
554192 ATGCCTAACTGTGCATTTGGAAGAAAGGTGCCAATAATGCAAGTTAGATGAAAGGTTAAATGCCT
131 ATGCCTAACTGTGCATTTGGAAGAAAGGTGCCAATAATGCAAGTTAGATGAAAGGTTAAATGCAT
* *
554257 AAATGTGCATTTGGCATAAAGGTGCCACTAATACAAGTTAG
196 AAATGTGCATTTGGCAGAAAGGTGCCAATAATACAAGTTAG
554298 AT
1 AT
554300 AAAAATAGTG
Statistics
Matches: 214, Mismatches: 23, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
235 177 0.83
236 37 0.17
ACGTcount: A:0.38, C:0.11, G:0.23, T:0.28
Consensus pattern (236 bp):
ATGAAAGGTTAAATGCCTAACTATGAATTTAGAAGAAAGGTGCCAATAATGCAAGTTAGATGAAA
GGTTAAATACCTAACTATGCATTTGGCAGAAAGGAGCCAATAATGCAAGTTAGATGAAAAGTTAA
ATGCCTAACTGTGCATTTGGAAGAAAGGTGCCAATAATGCAAGTTAGATGAAAGGTTAAATGCAT
AAATGTGCATTTGGCAGAAAGGTGCCAATAATACAAGTTAG
Found at i:555515 original size:39 final size:39
Alignment explanation
Indices: 555456--555608 Score: 184
Period size: 39 Copynumber: 3.9 Consensus size: 39
555446 GTACACCCAA
* *
555456 TAAGGGCTTACCCT-ATGCACAAAGTAGAGGAGCCTGCAG
1 TAAGGACTTACCCTGA-GCACAAAGCAGAGGAGCCTGCAG
555495 TAAGGACTTACCCTGAGCACAAAGCCA-AGGAGCCTGCAG
1 TAAGGACTTACCCTGAGCACAAAG-CAGAGGAGCCTGCAG
** * *
555534 TAAGGACTTACCCTGAGCACAAAGCCTAGGAGCCTACGG
1 TAAGGACTTACCCTGAGCACAAAGCAGAGGAGCCTGCAG
* * **
555573 TAAGGTCTTACCATGAGCACAAAGTTGAGGAGCCTG
1 TAAGGACTTACCCTGAGCACAAAGCAGAGGAGCCTG
555609 TGAAAAGTGG
Statistics
Matches: 100, Mismatches: 11, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
38 1 0.01
39 97 0.97
40 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.27, T:0.17
Consensus pattern (39 bp):
TAAGGACTTACCCTGAGCACAAAGCAGAGGAGCCTGCAG
Found at i:561280 original size:13 final size:12
Alignment explanation
Indices: 561262--561296 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
561252 TAATGGGCAA
561262 TTTTGAAAACTAT
1 TTTTGAAAAC-AT
561275 TTTTGAAAACAT
1 TTTTGAAAACAT
561287 TGTTTGAAAA
1 T-TTTGAAAA
561297 ATCATAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 3 0.14
13 18 0.86
ACGTcount: A:0.40, C:0.06, G:0.11, T:0.43
Consensus pattern (12 bp):
TTTTGAAAACAT
Found at i:561782 original size:20 final size:20
Alignment explanation
Indices: 561742--561820 Score: 63
Period size: 20 Copynumber: 3.8 Consensus size: 20
561732 AACCCGATGG
561742 GTGTATCGATACACTCA--CAA
1 GTGTATCGATACA-T-ATTCAA
561762 GTGTATCGATACATATTCAA
1 GTGTATCGATACATATTCAA
* * *
561782 GGACTATATCGGTACACATTCATA
1 -G--TGTATCGATACATATTCA-A
561806 GTGTATCGATACATA
1 GTGTATCGATACATA
561821 GCGAGGATGT
Statistics
Matches: 47, Mismatches: 6, Indels: 11
0.73 0.09 0.17
Matches are distributed among these distances:
18 1 0.02
19 1 0.02
20 16 0.34
21 12 0.26
23 16 0.34
24 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30
Consensus pattern (20 bp):
GTGTATCGATACATATTCAA
Found at i:561848 original size:14 final size:14
Alignment explanation
Indices: 561829--561861 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
561819 TAGCGAGGAT
*
561829 GTATCGATACATAG
1 GTATCGATACAAAG
561843 GTATCGATACAAAG
1 GTATCGATACAAAG
561857 GTATC
1 GTATC
561862 AATAAACTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.27
Consensus pattern (14 bp):
GTATCGATACAAAG
Found at i:570513 original size:11 final size:11
Alignment explanation
Indices: 570497--570521 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
570487 ATAAAAATTA
570497 AAAATTAAAAT
1 AAAATTAAAAT
570508 AAAATTAAAAT
1 AAAATTAAAAT
570519 AAA
1 AAA
570522 CTAATCAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (11 bp):
AAAATTAAAAT
Found at i:577005 original size:31 final size:29
Alignment explanation
Indices: 576967--577026 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 29
576957 CAACCATTCA
*
576967 CAACTTTTCCAAA-ATTTTCAAATTGGTCCCC
1 CAACTTTT-CAAACA-TTACAAA-TGGTCCCC
576998 CAACTTTTCAAACATTACAAATGGTCCCC
1 CAACTTTTCAAACATTACAAATGGTCCCC
577027 AAATTTTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
29 8 0.30
30 10 0.37
31 9 0.33
ACGTcount: A:0.32, C:0.30, G:0.07, T:0.32
Consensus pattern (29 bp):
CAACTTTTCAAACATTACAAATGGTCCCC
Found at i:583394 original size:18 final size:18
Alignment explanation
Indices: 583352--583394 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
583342 AAATGATGGT
*
583352 GTGATGTGATAACAAATG
1 GTGATGTGATAACAAAAG
*
583370 GTTATGTGATAACAAAAG
1 GTGATGTGATAACAAAAG
583388 GTGATGT
1 GTGATGT
583395 TGTGGCAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.37, C:0.05, G:0.28, T:0.30
Consensus pattern (18 bp):
GTGATGTGATAACAAAAG
Found at i:587427 original size:45 final size:44
Alignment explanation
Indices: 587344--587520 Score: 257
Period size: 44 Copynumber: 4.0 Consensus size: 44
587334 ATTTGCATAT
*
587344 CCAATAT-TTTACCATTTATTAACCATAAGCTCGTAAGCTTATTTTA
1 CCAATATACTTACCA-TTATT--CCATAAGCTCGTAAGCTTATTTTA
* * *
587390 CCAAAATACTTACCATTTATTTCATGAGCTCGTAAGCTTATTTTA
1 CCAATATACTTACCA-TTATTCCATAAGCTCGTAAGCTTATTTTA
*
587435 CCAATATACTTGCCATTATTCCATAAGCTCGTAAGCTTATTTTA
1 CCAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTA
*
587479 CCAATATACTTGCCATTATTCCATAAGCTCGTAAGCTTATTT
1 CCAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTT
587521 GCATGGTTAC
Statistics
Matches: 122, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
44 69 0.57
45 35 0.29
46 6 0.05
47 12 0.10
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.40
Consensus pattern (44 bp):
CCAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTA
Found at i:587469 original size:44 final size:44
Alignment explanation
Indices: 587366--587520 Score: 265
Period size: 44 Copynumber: 3.5 Consensus size: 44
587356 CATTTATTAA
* *
587366 CCATAAGCTCGTAAGCTTATTTTACCAAAATACTTACCATTTATT
1 CCATAAGCTCGTAAGCTTATTTTACCAATATACTTGCCA-TTATT
* *
587411 TCATGAGCTCGTAAGCTTATTTTACCAATATACTTGCCATTATT
1 CCATAAGCTCGTAAGCTTATTTTACCAATATACTTGCCATTATT
587455 CCATAAGCTCGTAAGCTTATTTTACCAATATACTTGCCATTATT
1 CCATAAGCTCGTAAGCTTATTTTACCAATATACTTGCCATTATT
587499 CCATAAGCTCGTAAGCTTATTT
1 CCATAAGCTCGTAAGCTTATTT
587521 GCATGGTTAC
Statistics
Matches: 104, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
44 69 0.66
45 35 0.34
ACGTcount: A:0.30, C:0.22, G:0.10, T:0.39
Consensus pattern (44 bp):
CCATAAGCTCGTAAGCTTATTTTACCAATATACTTGCCATTATT
Found at i:587669 original size:40 final size:39
Alignment explanation
Indices: 587625--587702 Score: 147
Period size: 40 Copynumber: 2.0 Consensus size: 39
587615 ACCGTAGTGC
587625 TACATATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
1 TACATATAAGGTCGTGCCCACCATATACA-CGAAGTGTAT
587665 TACATATAAGGTCGTGCCCACCATATACACGAAGTGTA
1 TACATATAAGGTCGTGCCCACCATATACACGAAGTGTA
587703 CTATAAACCT
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
39 9 0.24
40 29 0.76
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.24
Consensus pattern (39 bp):
TACATATAAGGTCGTGCCCACCATATACACGAAGTGTAT
Found at i:597343 original size:10 final size:10
Alignment explanation
Indices: 597328--597352 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
597318 TGCACAACAT
597328 TTTAGTTTCA
1 TTTAGTTTCA
597338 TTTAGTTTCA
1 TTTAGTTTCA
597348 TTTAG
1 TTTAG
597353 GTTATATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.08, G:0.12, T:0.60
Consensus pattern (10 bp):
TTTAGTTTCA
Found at i:605009 original size:24 final size:24
Alignment explanation
Indices: 604940--605011 Score: 90
Period size: 24 Copynumber: 3.0 Consensus size: 24
604930 TATTTTATCA
* * **
604940 GAATTTTGTTCTGATTTCTGACCT
1 GAATTCTGTTTTGATTTCTGATAT
* *
604964 GGATTCTGTTTTGATATCTGATAT
1 GAATTCTGTTTTGATTTCTGATAT
604988 GAATTCTGTTTTGATTTCTGATAT
1 GAATTCTGTTTTGATTTCTGATAT
605012 CTCCGTTTAC
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.19, C:0.11, G:0.18, T:0.51
Consensus pattern (24 bp):
GAATTCTGTTTTGATTTCTGATAT
Found at i:608630 original size:24 final size:24
Alignment explanation
Indices: 608556--608641 Score: 84
Period size: 24 Copynumber: 3.6 Consensus size: 24
608546 ATCTGATTTT
*
608556 AATTCTGTTATGATA-CTTGATCAG
1 AATTCTGTTTTGATATC-TGATCAG
* * * * *
608580 AATTCTGTTCTGATTTCTAACCTG
1 AATTCTGTTTTGATATCTGATCAG
*
608604 AATTCTGTTTTGATATCTGATAAG
1 AATTCTGTTTTGATATCTGATCAG
*
608628 AATTTTGTTTTGAT
1 AATTCTGTTTTGAT
608642 TTCTAATATC
Statistics
Matches: 49, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
24 48 0.98
25 1 0.02
ACGTcount: A:0.26, C:0.12, G:0.15, T:0.48
Consensus pattern (24 bp):
AATTCTGTTTTGATATCTGATCAG
Found at i:608630 original size:48 final size:48
Alignment explanation
Indices: 608556--608647 Score: 132
Period size: 48 Copynumber: 1.9 Consensus size: 48
608546 ATCTGATTTT
*
608556 AATTCTGTTATGATACTTGATCAGAATTCTGTTCTGATTTCTAACCTG
1 AATTCTGTTATGATACTTGATAAGAATTCTGTTCTGATTTCTAACCTG
* * *
608604 AATTCTGTTTTGATA-TCTGATAAGAATTTTGTTTTGATTTCTAA
1 AATTCTGTTATGATACT-TGATAAGAATTCTGTTCTGATTTCTAA
608648 TATCTTCGTT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
47 1 0.03
48 38 0.97
ACGTcount: A:0.26, C:0.12, G:0.14, T:0.48
Consensus pattern (48 bp):
AATTCTGTTATGATACTTGATAAGAATTCTGTTCTGATTTCTAACCTG
Found at i:612267 original size:24 final size:24
Alignment explanation
Indices: 612193--612278 Score: 84
Period size: 24 Copynumber: 3.6 Consensus size: 24
612183 ATCTGATTTT
*
612193 AATTCTGTTATGATA-CTTGATCAG
1 AATTCTGTTTTGATATC-TGATCAG
* * * * *
612217 AATTCTGTTCTGATTTCTAACCTG
1 AATTCTGTTTTGATATCTGATCAG
*
612241 AATTCTGTTTTGATATCTGATAAG
1 AATTCTGTTTTGATATCTGATCAG
*
612265 AATTTTGTTTTGAT
1 AATTCTGTTTTGAT
612279 TTCTAATATC
Statistics
Matches: 49, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
24 48 0.98
25 1 0.02
ACGTcount: A:0.26, C:0.12, G:0.15, T:0.48
Consensus pattern (24 bp):
AATTCTGTTTTGATATCTGATCAG
Found at i:612267 original size:48 final size:48
Alignment explanation
Indices: 612193--612284 Score: 132
Period size: 48 Copynumber: 1.9 Consensus size: 48
612183 ATCTGATTTT
*
612193 AATTCTGTTATGATACTTGATCAGAATTCTGTTCTGATTTCTAACCTG
1 AATTCTGTTATGATACTTGATAAGAATTCTGTTCTGATTTCTAACCTG
* * *
612241 AATTCTGTTTTGATA-TCTGATAAGAATTTTGTTTTGATTTCTAA
1 AATTCTGTTATGATACT-TGATAAGAATTCTGTTCTGATTTCTAA
612285 TATCTTCGTT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
47 1 0.03
48 38 0.97
ACGTcount: A:0.26, C:0.12, G:0.14, T:0.48
Consensus pattern (48 bp):
AATTCTGTTATGATACTTGATAAGAATTCTGTTCTGATTTCTAACCTG
Found at i:619125 original size:22 final size:22
Alignment explanation
Indices: 619076--619126 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
619066 CATTGACCAC
* *
619076 CGTTGACCAGAGCTTTGACCGG
1 CGTTGACCAGAGCATTGAACGG
*
619098 CATTGACCAG-GCATTGAACGG
1 CGTTGACCAGAGCATTGAACGG
619119 TCGTTGAC
1 -CGTTGAC
619127 TTTTTCCAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 9 0.38
22 15 0.62
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (22 bp):
CGTTGACCAGAGCATTGAACGG
Found at i:624055 original size:66 final size:66
Alignment explanation
Indices: 623931--624062 Score: 169
Period size: 66 Copynumber: 2.0 Consensus size: 66
623921 TCATTCTAGC
* * * * * *
623931 GTTGCTGGTTCTGGTGAACAGCTTGGTTCAGGAGATACAGATGTGACACAGTCTGGTAATGAAGG
1 GTTGCTGGTGCTGATGAACAACTTGGTTCACGAGATACAGAAGTGACACAGTCGGGTAATGAAGG
623996 T
66 T
*
623997 GTTGCTGGTGCTGATGAACAACTTGGTTCACGAGATGA-AGAAGTGATAC-GCTCGGGTAATGAA
1 GTTGCTGGTGCTGATGAACAACTTGGTTCACGAGAT-ACAGAAGTGACACAG-TCGGGTAATGAA
624060 GGT
64 GGT
624063 CTTACTTAGG
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
65 1 0.02
66 55 0.96
67 1 0.02
ACGTcount: A:0.26, C:0.14, G:0.33, T:0.27
Consensus pattern (66 bp):
GTTGCTGGTGCTGATGAACAACTTGGTTCACGAGATACAGAAGTGACACAGTCGGGTAATGAAGG
T
Found at i:627758 original size:22 final size:22
Alignment explanation
Indices: 627733--627775 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
627723 TCTACAAATA
627733 TTTACA-AAACTAACACCCAAAG
1 TTTACACAAA-TAACACCCAAAG
*
627755 TTTACACAAATAGCACCCAAA
1 TTTACACAAATAACACCCAAA
627776 CAGAAATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.49, C:0.28, G:0.05, T:0.19
Consensus pattern (22 bp):
TTTACACAAATAACACCCAAAG
Found at i:630154 original size:18 final size:18
Alignment explanation
Indices: 630131--630166 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
630121 ATTTACATGA
630131 ACACGTTCATAAAAATAG
1 ACACGTTCATAAAAATAG
630149 ACACGTTCATAAAAATAG
1 ACACGTTCATAAAAATAG
630167 TTAACTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.17, G:0.11, T:0.22
Consensus pattern (18 bp):
ACACGTTCATAAAAATAG
Found at i:630643 original size:23 final size:23
Alignment explanation
Indices: 630617--630671 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
630607 AAATATTCAA
* * *
630617 TATAAATATATTTGCTT-AATGTT
1 TATAAACATATTAG-TTCAATGCT
630640 TATAAACATATTAGTTCAATGCT
1 TATAAACATATTAGTTCAATGCT
630663 TATAAACAT
1 TATAAACAT
630672 GTTTATTTAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 2 0.07
23 26 0.93
ACGTcount: A:0.40, C:0.09, G:0.07, T:0.44
Consensus pattern (23 bp):
TATAAACATATTAGTTCAATGCT
Found at i:631388 original size:26 final size:26
Alignment explanation
Indices: 631352--631413 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
631342 ATGGTCTTTT
631352 TTCATACCTTTTACTTATGACATCCA
1 TTCATACCTTTTACTTATGACATCCA
** *
631378 TTCATACCTTTTACTTATTTCATCCT
1 TTCATACCTTTTACTTATGACATCCA
*
631404 TTCATGCCTT
1 TTCATACCTT
631414 AATGCATCAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.21, C:0.27, G:0.03, T:0.48
Consensus pattern (26 bp):
TTCATACCTTTTACTTATGACATCCA
Found at i:631436 original size:46 final size:46
Alignment explanation
Indices: 631386--631520 Score: 216
Period size: 46 Copynumber: 2.9 Consensus size: 46
631376 CATTCATACC
**
631386 TTTTACTTATTTCATCCTTTCATGCCTTAATGCATCATTTCATGCA
1 TTTTACTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCA
* *
631432 TTTTACTTATGGCATCCTTCCATGGCTTAATGCATCATTTCATGCA
1 TTTTACTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCA
* *
631478 TTTTAATTATGGCATCCTTTCATGCCTTAATGCATCCTTTCAT
1 TTTTACTTATGGCATCCTTTCATGCCTTAATGCATCATTTCAT
631521 TCCTTAATGC
Statistics
Matches: 81, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.21, C:0.24, G:0.10, T:0.45
Consensus pattern (46 bp):
TTTTACTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCA
Found at i:631446 original size:26 final size:25
Alignment explanation
Indices: 631417--631614 Score: 78
Period size: 20 Copynumber: 8.6 Consensus size: 25
631407 ATGCCTTAAT
631417 GCATCATTTCATGCATTTTACTTATG
1 GCATCATTTCATGCATTTTA-TTATG
* *
631443 GCATCCTTCCATGGC---TTA--AT-
1 GCATCATTTCAT-GCATTTTATTATG
631463 GCATCATTTCATGCATTTTAATTATG
1 GCATCATTTCATGCATTTT-ATTATG
* *
631489 GCATCCTTTCATGC--CTTA--AT-
1 GCATCATTTCATGCATTTTATTATG
* * *
631509 GCATCCTTTCATTC--CTTA--AT-
1 GCATCATTTCATGCATTTTATTATG
*
631529 GCATGATTTCATGCATTTTTATTATG
1 GCATCATTTCATGCA-TTTTATTATG
* *
631555 GCATCCTTTCATGC--CTTA--AT-
1 GCATCATTTCATGCATTTTATTATG
** *
631575 GCATCCGTTCATGCATTTAAGTTATG
1 GCATCATTTCATGCATTTTA-TTATG
*
631601 GCATCCTTTCATGC
1 GCATCATTTCATGC
631615 CTTAATGCAC
Statistics
Matches: 134, Mismatches: 18, Indels: 40
0.70 0.09 0.21
Matches are distributed among these distances:
19 2 0.01
20 53 0.40
21 6 0.04
22 4 0.03
23 8 0.06
24 5 0.04
25 6 0.04
26 48 0.36
27 2 0.01
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.42
Consensus pattern (25 bp):
GCATCATTTCATGCATTTTATTATG
Found at i:631527 original size:66 final size:66
Alignment explanation
Indices: 631443--631588 Score: 238
Period size: 66 Copynumber: 2.2 Consensus size: 66
631433 TTTACTTATG
* *
631443 GCATCCTTCCATGGCTTAATGCATCATTTCATGCATTTTAATTATGGCATCCTTTCATGCCTTAA
1 GCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAATTATGGCATCCTTTCATGCCTTAA
631508 T
66 T
* * *
631509 GCATCCTTTCATTCCTTAATGCATGATTTCATGCATTTTTATTATGGCATCCTTTCATGCCTTAA
1 GCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAATTATGGCATCCTTTCATGCCTTAA
631574 T
66 T
*
631575 GCATCCGTTCATGC
1 GCATCCTTTCATGC
631589 ATTTAAGTTA
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
66 73 1.00
ACGTcount: A:0.21, C:0.25, G:0.12, T:0.42
Consensus pattern (66 bp):
GCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAATTATGGCATCCTTTCATGCCTTAA
T
Found at i:631554 original size:112 final size:112
Alignment explanation
Indices: 631398--631634 Score: 370
Period size: 112 Copynumber: 2.1 Consensus size: 112
631388 TTACTTATTT
*
631398 CATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTACTTATGGCATCCTTCCATGGCTTAAT
1 CATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTACTTATGGCATCCTTCCATGCCTTAAT
*
631463 GCATCATTTCATGCATTTTAA-TTATGGCATCCTTTCATGCCTTAATG
66 GCATCAGTTCATGCA-TTTAAGTTATGGCATCCTTTCATGCCTTAATG
* * *
631510 CATCCTTTCATTCCTTAATGCATGATTTCATGCATTTTTA-TTATGGCATCCTTTCATGCCTTAA
1 CATCCTTTCATGCCTTAATGCATCATTTCATGCA-TTTTACTTATGGCATCCTTCCATGCCTTAA
*
631574 TGCATCCGTTCATGCATTTAAGTTATGGCATCCTTTCATGCCTTAATG
65 TGCATCAGTTCATGCATTTAAGTTATGGCATCCTTTCATGCCTTAATG
* *
631622 CACCCGTTCATGC
1 CATCCTTTCATGC
631635 ATTTTAATTA
Statistics
Matches: 114, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
111 5 0.04
112 104 0.91
113 5 0.04
ACGTcount: A:0.22, C:0.25, G:0.12, T:0.41
Consensus pattern (112 bp):
CATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTACTTATGGCATCCTTCCATGCCTTAAT
GCATCAGTTCATGCATTTAAGTTATGGCATCCTTTCATGCCTTAATG
Found at i:631559 original size:46 final size:46
Alignment explanation
Indices: 631509--631646 Score: 206
Period size: 46 Copynumber: 3.0 Consensus size: 46
631499 ATGCCTTAAT
* *** *
631509 GCATCCTTTCATTCCTTAATGCATGATTTCATGCATTTTTATTATG
1 GCATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTAATTATG
631555 GCATCCTTTCATGCCTTAATGCATCCGTTCATGCA-TTTAAGTTATG
1 GCATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTAA-TTATG
*
631601 GCATCCTTTCATGCCTTAATGCACCCGTTCATGCATTTTAATTATG
1 GCATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTAATTATG
631647 AAATTGATTT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
45 4 0.05
46 75 0.89
47 5 0.06
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.42
Consensus pattern (46 bp):
GCATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTAATTATG
Found at i:636938 original size:21 final size:21
Alignment explanation
Indices: 636914--636969 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
636904 AACCAAATAG
*
636914 AGAAGTAAAGAGAGCAGCGAA
1 AGAAGTAGAGAGAGCAGCGAA
*
636935 AGAAGTAGAGAGAGCAGCGAT
1 AGAAGTAGAGAGAGCAGCGAA
*
636956 AGAAGCAGAGAGAG
1 AGAAGTAGAGAGAG
636970 AAACATCATT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.48, C:0.09, G:0.38, T:0.05
Consensus pattern (21 bp):
AGAAGTAGAGAGAGCAGCGAA
Found at i:637137 original size:14 final size:14
Alignment explanation
Indices: 637118--637147 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
637108 CTACATTATA
637118 TTTAACTTCGATGT
1 TTTAACTTCGATGT
637132 TTTAACTTCGATGT
1 TTTAACTTCGATGT
637146 TT
1 TT
637148 GTAAACTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.13, G:0.13, T:0.53
Consensus pattern (14 bp):
TTTAACTTCGATGT
Found at i:640476 original size:18 final size:18
Alignment explanation
Indices: 640453--640489 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
640443 AACTCGAGTG
640453 AATTCAAATTTTTTGTCA
1 AATTCAAATTTTTTGTCA
640471 AATTCAAATTTTTTGTCA
1 AATTCAAATTTTTTGTCA
640489 A
1 A
640490 GTAAAGTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.11, G:0.05, T:0.49
Consensus pattern (18 bp):
AATTCAAATTTTTTGTCA
Found at i:643317 original size:21 final size:21
Alignment explanation
Indices: 643288--643327 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
643278 CATTCTAACA
*
643288 TAAAATTCAGCATTCAATAAT
1 TAAAATTCAACATTCAATAAT
* *
643309 TAAATTTCAACATTGAATA
1 TAAAATTCAACATTCAATA
643328 CCCCTAATTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.12, G:0.05, T:0.35
Consensus pattern (21 bp):
TAAAATTCAACATTCAATAAT
Found at i:654026 original size:4 final size:4
Alignment explanation
Indices: 654019--654052 Score: 59
Period size: 4 Copynumber: 8.2 Consensus size: 4
654009 TTAATTAAAC
654019 ATAA ATAAA ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA AT-AA ATAA ATAA ATAA ATAA ATAA ATAA A
654053 GTACTATATT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 25 0.86
5 4 0.14
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:655389 original size:3 final size:3
Alignment explanation
Indices: 655381--655491 Score: 168
Period size: 3 Copynumber: 37.0 Consensus size: 3
655371 TTCAGGCCTG
655381 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
655429 TAA TAA TAA TAA AAA TAA TAA TAG TAA TAA TAA TAA TAT TTA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
655477 AAA TAA TAA AAA TAA
1 TAA TAA TAA TAA TAA
655492 AAATGAACAA
Statistics
Matches: 96, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 96 1.00
ACGTcount: A:0.67, C:0.00, G:0.01, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:655848 original size:42 final size:42
Alignment explanation
Indices: 655802--655884 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
655792 TCATTTGAAA
* **
655802 ACATCCTACATTGAAGGTCTTATGGATGACCCGAAGGCTTTG
1 ACATCCTACACTGAAGGTCTTACAGATGACCCGAAGGCTTTG
* *
655844 ACATCTTGCACTGAAGGTCTTACAGATGACCCGAAGGCTTT
1 ACATCCTACACTGAAGGTCTTACAGATGACCCGAAGGCTTT
655885 AAATTAAGAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (42 bp):
ACATCCTACACTGAAGGTCTTACAGATGACCCGAAGGCTTTG
Found at i:656068 original size:218 final size:217
Alignment explanation
Indices: 655668--656133 Score: 727
Period size: 218 Copynumber: 2.1 Consensus size: 217
655658 TCTGGAATTC
* * *
655668 AAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAGTTGTCAAGGAATCCCTTTGTTAGGCTTAACT
1 AAATTAAGAAACCCCCGAAGGCTTAGTTTCTTAGTTGTCAAGGAATCCCTTTATTAGCCTTAACT
** * *
655733 TCATTTAACAACTCTTTTGAGATAATTAGTAAACCCCCGAAGGCTTGGTTTCTAAAATCTCATTT
66 TCATTTAACAACTCTTTTGAGATAATTAAAAAACCCCAGAAGGCTTAGTTTCTAAAATCTCATTT
* * *
655798 GAAAACATCCTACATTGAAGGTCTTATGGATGACCCGAAGGCTTTGACATCTTGCACTGAAGGTC
131 GAAAACATCATACACTGAAGGTCTTATGGATGACCCGAAGGCTTTAACATCTTGCACTGAAGGTC
* *
655863 TTACAGATGACCCGAAGGCTTT
196 TTACAGATAACCCGAAGGATTT
*
655885 AAATTAAGAAACCCCCGAAGGCTTAGTTTCTTAGTTGTCAAGG-ATCCCCTTTATTAGCCTTAGC
1 AAATTAAGAAACCCCCGAAGGCTTAGTTTCTTAGTTGTCAAGGAAT-CCCTTTATTAGCCTTAAC
* * *
655949 TTCCTTTAATAGCTCTTTTGAGATAATTAAAAAACCCCAGAAAGGCTTAGTTTCTAAAATCTCAT
65 TTCATTTAACAACTCTTTTGAGATAATTAAAAAACCCCAG-AAGGCTTAGTTTCTAAAATCTCAT
* * *
656014 TTGAAAACATCATGCACTGAAGGTCTTATGGATGACCCGAAGGTTTTAACATCTTGCGCTGAAGG
129 TTGAAAACATCATACACTGAAGGTCTTATGGATGACCCGAAGGCTTTAACATCTTGCACTGAAGG
656079 TCTTACAGATAACCCGAAGGATTT
194 TCTTACAGATAACCCGAAGGATTT
*
656103 AAATTAAGAAACCCCCGAAGGCTCAGTTTCT
1 AAATTAAGAAACCCCCGAAGGCTTAGTTTCT
656134 AAATCTCATT
Statistics
Matches: 227, Mismatches: 20, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
216 2 0.01
217 91 0.40
218 134 0.59
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (217 bp):
AAATTAAGAAACCCCCGAAGGCTTAGTTTCTTAGTTGTCAAGGAATCCCTTTATTAGCCTTAACT
TCATTTAACAACTCTTTTGAGATAATTAAAAAACCCCAGAAGGCTTAGTTTCTAAAATCTCATTT
GAAAACATCATACACTGAAGGTCTTATGGATGACCCGAAGGCTTTAACATCTTGCACTGAAGGTC
TTACAGATAACCCGAAGGATTT
Found at i:656078 original size:42 final size:42
Alignment explanation
Indices: 656019--656104 Score: 118
Period size: 42 Copynumber: 2.0 Consensus size: 42
656009 CTCATTTGAA
** * *
656019 AACATCATGCACTGAAGGTCTTATGGATGACCCGAAGGTTTT
1 AACATCATGCACTGAAGGTCTTACAGATAACCCGAAGGATTT
* *
656061 AACATCTTGCGCTGAAGGTCTTACAGATAACCCGAAGGATTT
1 AACATCATGCACTGAAGGTCTTACAGATAACCCGAAGGATTT
656103 AA
1 AA
656105 ATTAAGAAAC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (42 bp):
AACATCATGCACTGAAGGTCTTACAGATAACCCGAAGGATTT
Found at i:656151 original size:129 final size:132
Alignment explanation
Indices: 655973--656232 Score: 418
Period size: 130 Copynumber: 2.0 Consensus size: 132
655963 CTTTTGAGAT
*
655973 AATTAAAAAACCCCAGAAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCATGCACTGAAGGT
1 AATTAAAAAACCCCAGAAAGGCTCAGTTTCTAAAATCTCATTTGAAAACATCATGCACTGAAGGT
* * *
656038 CTTATGGATGACCCGAAGG-TTTTAACATCTTGCGCTGAAGGTCTTACAGATAACCCGAAGGATT
66 CTTATGGATGACCCAAAGGACTTTAACATCTTGCACTGAAGGTCTTACAGATAACCCGAAGGATT
656102 TA
131 TA
* * *
656104 AATTAAGAAACCCCCG-AAGGCTCAGTTTCT-AAATCTCATTTGAAAACATCCTGCACTGAAGGT
1 AATTAAAAAACCCCAGAAAGGCTCAGTTTCTAAAATCTCATTTGAAAACATCATGCACTGAAGGT
* *
656167 CTTATGGATGGCCCAAAGGACTTTAACATCTTGCACTGAAGGTCTTACAGATGACCCGAAGGATT
66 CTTATGGATGACCCAAAGGACTTTAACATCTTGCACTGAAGGTCTTACAGATAACCCGAAGGATT
656232 T
131 T
656233 TAAGTATCAT
Statistics
Matches: 119, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
129 49 0.41
130 56 0.47
131 14 0.12
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (132 bp):
AATTAAAAAACCCCAGAAAGGCTCAGTTTCTAAAATCTCATTTGAAAACATCATGCACTGAAGGT
CTTATGGATGACCCAAAGGACTTTAACATCTTGCACTGAAGGTCTTACAGATAACCCGAAGGATT
TA
Found at i:656229 original size:43 final size:43
Alignment explanation
Indices: 656148--656235 Score: 122
Period size: 43 Copynumber: 2.0 Consensus size: 43
656138 CTCATTTGAA
** *
656148 AACATCCTGCACTGAAGGTCTTATGGATGGCCCAAAGGACTTT
1 AACATCCTGCACTGAAGGTCTTACAGATGACCCAAAGGACTTT
* * *
656191 AACATCTTGCACTGAAGGTCTTACAGATGACCCGAAGGATTTT
1 AACATCCTGCACTGAAGGTCTTACAGATGACCCAAAGGACTTT
656234 AA
1 AA
656236 GTATCATGCT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (43 bp):
AACATCCTGCACTGAAGGTCTTACAGATGACCCAAAGGACTTT
Found at i:664476 original size:66 final size:66
Alignment explanation
Indices: 664364--664495 Score: 196
Period size: 66 Copynumber: 2.0 Consensus size: 66
664354 TCATTCTAGC
* * * *
664364 GTTGCTGGTTCTGGTGAACAGCTTGGTTCAGGAGATGCAGATGTGACACAG-TCTGGTAATGAAG
1 GTTGCTGGTGCTGATGAACAGCTTGGTTCAGGAGATGCAGAAGTGACAC-GTTCGGGTAATGAAG
664428 GT
65 GT
664430 GTTGCTGGTGCTGATGAACAGCTTGGTTCAGGAGAT-CAAGAAGTGACACGTTCGGGTAATGAAG
1 GTTGCTGGTGCTGATGAACAGCTTGGTTCAGGAGATGC-AGAAGTGACACGTTCGGGTAATGAAG
664494 GT
65 GT
664496 CTTACTTAGG
Statistics
Matches: 60, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
65 2 0.03
66 58 0.97
ACGTcount: A:0.24, C:0.14, G:0.35, T:0.27
Consensus pattern (66 bp):
GTTGCTGGTGCTGATGAACAGCTTGGTTCAGGAGATGCAGAAGTGACACGTTCGGGTAATGAAGG
T
Found at i:666945 original size:23 final size:23
Alignment explanation
Indices: 666919--666974 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
666909 TATATATTCA
* *
666919 TTATAAATATATTTGCTT-AATGT
1 TTATAAACATATTAG-TTCAATGT
*
666942 TTATAAACATATTAGTTCAATTT
1 TTATAAACATATTAGTTCAATGT
666965 TTATAAACAT
1 TTATAAACAT
666975 GTTTATTTAG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 2 0.07
23 27 0.93
ACGTcount: A:0.39, C:0.07, G:0.05, T:0.48
Consensus pattern (23 bp):
TTATAAACATATTAGTTCAATGT
Found at i:668442 original size:27 final size:27
Alignment explanation
Indices: 668399--668456 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 27
668389 TGTTTTCCTC
* *
668399 GTTTCTTTGTTTAAATTCATTGC-TTTG
1 GTTTCTTTGTATAAATTAATT-CATTTG
668426 GTTTCTTT-TATATAATTAATTCATTTG
1 GTTTCTTTGTATA-AATTAATTCATTTG
668453 GTTT
1 GTTT
668457 GTTCATATCG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 4 0.15
27 23 0.85
ACGTcount: A:0.19, C:0.09, G:0.12, T:0.60
Consensus pattern (27 bp):
GTTTCTTTGTATAAATTAATTCATTTG
Found at i:669361 original size:26 final size:26
Alignment explanation
Indices: 669325--669376 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
669315 ATAAATTAAT
*
669325 ACATCTATTCATACCTTTTACTTATG
1 ACATCCATTCATACCTTTTACTTATG
669351 ACATCCATTCATACCTTTTACTTATG
1 ACATCCATTCATACCTTTTACTTATG
669377 GCACCCTTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.04, T:0.44
Consensus pattern (26 bp):
ACATCCATTCATACCTTTTACTTATG
Found at i:669387 original size:26 final size:26
Alignment explanation
Indices: 669331--669393 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
669321 TAATACATCT
*
669331 ATTCATACCTTTTACTTATGACATCC
1 ATTCATACCTTTTACTTATGACACCC
*
669357 ATTCATACCTTTTACTTATGGCACCC
1 ATTCATACCTTTTACTTATGACACCC
* *
669383 TTTCATGCCTT
1 ATTCATACCTT
669394 AATGAATCGT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.22, C:0.29, G:0.06, T:0.43
Consensus pattern (26 bp):
ATTCATACCTTTTACTTATGACACCC
Found at i:669408 original size:46 final size:46
Alignment explanation
Indices: 669366--669502 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
669356 CATTCATACC
* * *
669366 TTTTACTTATGGCACCCTTTCATGCCTTAATGAATCGTTTCATGCA
1 TTTTACTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCA
* *
669412 TTTTACTTATGGCATCCTTCCATGCCGTAATGCATCATTTCATGCA
1 TTTTACTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCA
* * * * *
669458 TTTTAATTATGACATCCTTTTAAGCCTTAATGCATCCTTTCATGC
1 TTTTACTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGC
669503 CTTAATGCAT
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.23, C:0.24, G:0.12, T:0.42
Consensus pattern (46 bp):
TTTTACTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCA
Found at i:669495 original size:20 final size:20
Alignment explanation
Indices: 669470--669519 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
669460 TTAATTATGA
*
669470 CATCCTTTTAAGCCTTAATG
1 CATCCTTTCAAGCCTTAATG
*
669490 CATCCTTTCATGCCTTAATG
1 CATCCTTTCAAGCCTTAATG
*
669510 CATCATTTCA
1 CATCCTTTCA
669520 TGCATTTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.24, C:0.28, G:0.08, T:0.40
Consensus pattern (20 bp):
CATCCTTTCAAGCCTTAATG
Found at i:669520 original size:20 final size:20
Alignment explanation
Indices: 669481--669522 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
669471 ATCCTTTTAA
*
669481 GCCTTAATGCATCCTTTCAT
1 GCCTTAATGCATCATTTCAT
669501 GCCTTAATGCATCATTTCAT
1 GCCTTAATGCATCATTTCAT
669521 GC
1 GC
669523 ATTTTAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.21, C:0.29, G:0.12, T:0.38
Consensus pattern (20 bp):
GCCTTAATGCATCATTTCAT
Found at i:669540 original size:46 final size:46
Alignment explanation
Indices: 669490--669627 Score: 188
Period size: 46 Copynumber: 3.0 Consensus size: 46
669480 AGCCTTAATG
669490 CATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAATTATGA
1 CATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAATTATGA
* * * *
669536 CATCCTTTCATGCCTTAATGCAT-TTGTTCATGCATTTTAGTTTTGG
1 CATCCTTTCATGCCTTAATGCATCAT-TTCATGCATTTTAATTATGA
* * **
669582 TATCCTTTCATGCCTTAATGCACCCGTTCATGCATTTTAATTATGA
1 CATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAATTATGA
669628 AATCGATTTA
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
45 1 0.01
46 78 0.99
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.44
Consensus pattern (46 bp):
CATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAATTATGA
Found at i:669540 original size:112 final size:112
Alignment explanation
Indices: 669377--669614 Score: 325
Period size: 112 Copynumber: 2.1 Consensus size: 112
669367 TTTACTTATG
* * *
669377 GCACCCTTTCATGCCTTAATGAATCGTTTCATGCATTTTACTTATGGCATCCTTCCATGCCGTAA
1 GCACCCTTTCATGCCTTAATGAATCATTTCATGCATTTTAATTATGACATCCTTCCATGCCGTAA
*
669442 TGCATCAT-TTCATGCATTTTAATTATGACATCCTTTTAAGCCTTAAT
66 TGCAT-ATGTTCATGCATTTTAATTATGACATCCTTTCAAGCCTTAAT
* * * *
669489 GCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAATTATGACATCCTTTCATGCCTTAA
1 GCACCCTTTCATGCCTTAATGAATCATTTCATGCATTTTAATTATGACATCCTTCCATGCCGTAA
* * * ** *
669554 TGCATTTGTTCATGCATTTTAGTTTTGGTATCCTTTCATGCCTTAAT
66 TGCATATGTTCATGCATTTTAATTATGACATCCTTTCAAGCCTTAAT
*
669601 GCACCCGTTCATGC
1 GCACCCTTTCATGC
669615 ATTTTAATTA
Statistics
Matches: 109, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
111 1 0.01
112 108 0.99
ACGTcount: A:0.22, C:0.24, G:0.12, T:0.42
Consensus pattern (112 bp):
GCACCCTTTCATGCCTTAATGAATCATTTCATGCATTTTAATTATGACATCCTTCCATGCCGTAA
TGCATATGTTCATGCATTTTAATTATGACATCCTTTCAAGCCTTAAT
Found at i:669568 original size:66 final size:66
Alignment explanation
Indices: 669423--669558 Score: 236
Period size: 66 Copynumber: 2.1 Consensus size: 66
669413 TTTACTTATG
* *
669423 GCATCCTTCCATGCCGTAATGCATCATTTCATGCATTTTAATTATGACATCCTTTTAAGCCTTAA
1 GCATCCTTTCATGCCGTAATGCATCATTTCATGCATTTTAATTATGACATCCTTTCAAGCCTTAA
669488 T
66 T
* *
669489 GCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAATTATGACATCCTTTCATGCCTTAA
1 GCATCCTTTCATGCCGTAATGCATCATTTCATGCATTTTAATTATGACATCCTTTCAAGCCTTAA
669554 T
66 T
669555 GCAT
1 GCAT
669559 TTGTTCATGC
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.25, C:0.24, G:0.10, T:0.40
Consensus pattern (66 bp):
GCATCCTTTCATGCCGTAATGCATCATTTCATGCATTTTAATTATGACATCCTTTCAAGCCTTAA
T
Found at i:674807 original size:21 final size:21
Alignment explanation
Indices: 674783--674830 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
674773 AGATAAGTAA
674783 AGAGAGCAACGAGAGAAGCAG
1 AGAGAGCAACGAGAGAAGCAG
** *
674804 AGAGAGCAGTGATAGAAGCAG
1 AGAGAGCAACGAGAGAAGCAG
674825 AGAGAG
1 AGAGAG
674831 AAACATCATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.46, C:0.10, G:0.40, T:0.04
Consensus pattern (21 bp):
AGAGAGCAACGAGAGAAGCAG
Found at i:678317 original size:18 final size:18
Alignment explanation
Indices: 678294--678330 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
678284 AACTCGAGTG
678294 AATTCAAATTTTTTGTCA
1 AATTCAAATTTTTTGTCA
678312 AATTCAAATTTTTTGTCA
1 AATTCAAATTTTTTGTCA
678330 A
1 A
678331 GTAAAGTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.11, G:0.05, T:0.49
Consensus pattern (18 bp):
AATTCAAATTTTTTGTCA
Found at i:681096 original size:21 final size:21
Alignment explanation
Indices: 681060--681113 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
681050 TGGTCCCAAA
*
681060 TCAACATTCTA-AATTAAAAT
1 TCAACATTCAATAATTAAAAT
* *
681080 TCAGCATTCAATAATTAAATT
1 TCAACATTCAATAATTAAAAT
*
681101 TCAACATTGAATA
1 TCAACATTCAATA
681114 CCCCTAATTA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 9 0.32
21 19 0.68
ACGTcount: A:0.46, C:0.15, G:0.04, T:0.35
Consensus pattern (21 bp):
TCAACATTCAATAATTAAAAT
Found at i:682611 original size:22 final size:22
Alignment explanation
Indices: 682583--682626 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
682573 AATTCCTTAG
*
682583 GGTGGCTCCTTTGTTTTGTGCA
1 GGTGGCTCCTTTGTTTTCTGCA
682605 GGTGGCTCCTTTGTTTTCTGCA
1 GGTGGCTCCTTTGTTTTCTGCA
682627 TTGGGTAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.05, C:0.20, G:0.30, T:0.45
Consensus pattern (22 bp):
GGTGGCTCCTTTGTTTTCTGCA
Found at i:687405 original size:4 final size:4
Alignment explanation
Indices: 687391--687420 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
687381 TTAATAAAAC
687391 ATAA ATAAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA AT-AA ATAA ATAA ATAA ATAA ATAA A
687421 GTACTATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
ATAA
Found at i:688658 original size:3 final size:3
Alignment explanation
Indices: 688650--688766 Score: 137
Period size: 3 Copynumber: 39.0 Consensus size: 3
688640 TTCAGGCCTG
* *
688650 TAA TAA TAA TAA TAA TAA TAA TAA TCA TAA -ATA TAA TAA TAA TAT
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA
* * * *
688695 TTA TAA TAA TAA TAA TAA TAA CAA TAA TAA TAG TAA TAA TAA TAA TAT
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
688743 TTA TAA TAA AAA TAA TAA AAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA
688767 AAATGGGCAA
Statistics
Matches: 94, Mismatches: 18, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
2 1 0.01
3 92 0.98
4 1 0.01
ACGTcount: A:0.63, C:0.02, G:0.01, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:689123 original size:42 final size:42
Alignment explanation
Indices: 689076--689161 Score: 118
Period size: 42 Copynumber: 2.0 Consensus size: 42
689066 CTCATTTGAA
* ** *
689076 AACATCATGCATTGAAGGTCTTATGGATGACCCGAAGGCTTT
1 AACATCATGCACTGAAGGTCTTACAGATGACCCGAAGGATTT
* *
689118 AACATCTTGCACTGAAGGTCTTACAGATGACCCGTAGGATTT
1 AACATCATGCACTGAAGGTCTTACAGATGACCCGAAGGATTT
689160 AA
1 AA
689162 ATTAAGAAAC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (42 bp):
AACATCATGCACTGAAGGTCTTACAGATGACCCGAAGGATTT
Found at i:689336 original size:218 final size:217
Alignment explanation
Indices: 688943--689408 Score: 711
Period size: 218 Copynumber: 2.1 Consensus size: 217
688933 TCTGGAATTC
* * * ** *
688943 AAATCAAGAAACCCCCGAA-AGCGTAGTTTCTTAGTTGTCAAGGAGCCTTTTTGTTAGGCTTAAC
1 AAATTAAGAAACCACCGAAGA-CTTAGTTTCTTAGTTGTCAAGGAGCCCCTTTGTTAGCCTTAAC
** * *
689007 TTCCTTTAACAACTCTTTTGAGATAATTATTAAACCCCCGAAGGCTTGGTTTCTAAAATCTCATT
65 TTCCTTTAACAACTCTTTTGAGATAATTAAGAAACCCCCGAAGACTTAGTTTCTAAAATCTCATT
689072 TGAAAACATCATGCATTGAAGGTCTTATGGATGACCCGAAGGCTTTAACATCTTGCACTGAAGGT
130 TGAAAACATCATGCATTGAAGGTCTTATGGATGACCCGAAGGCTTTAACATCTTGCACTGAAGGT
*
689137 CTTACAGATGACCCGTAGGATTT
195 CTTACAGATGACCCGAAGGATTT
* * *
689160 AAATTAAGAAACCACTGAAGACTTAGTTTCTTAGTTGTCAAGGATCCCCTTTGTTAGCCTT-AGT
1 AAATTAAGAAACCACCGAAGACTTAGTTTCTTAGTTGTCAAGGAGCCCCTTTGTTAGCCTTAACT
* * * *
689224 GTCCTTTAACAGCTCTTTTGAGATAATTAAGAAACCTCTGAAAGATTTAGTTTCTAAAATCTCAT
66 -TCCTTTAACAACTCTTTTGAGATAATTAAGAAACCCCCG-AAGACTTAGTTTCTAAAATCTCAT
689289 TTGAAAACATCATGCATTGAAGGTCTTATGGATGACCCGAAGGCTTTAACATCTTGCACTGAAGG
129 TTGAAAACATCATGCATTGAAGGTCTTATGGATGACCCGAAGGCTTTAACATCTTGCACTGAAGG
689354 TCTTACAGATGACCCGAAGGATTT
194 TCTTACAGATGACCCGAAGGATTT
* *
689378 AAATTAAGAAACCCCCGAAGGCTTAGTTTCT
1 AAATTAAGAAACCACCGAAGACTTAGTTTCT
689409 AAATCTCATT
Statistics
Matches: 225, Mismatches: 21, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
216 2 0.01
217 85 0.38
218 138 0.61
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.32
Consensus pattern (217 bp):
AAATTAAGAAACCACCGAAGACTTAGTTTCTTAGTTGTCAAGGAGCCCCTTTGTTAGCCTTAACT
TCCTTTAACAACTCTTTTGAGATAATTAAGAAACCCCCGAAGACTTAGTTTCTAAAATCTCATTT
GAAAACATCATGCATTGAAGGTCTTATGGATGACCCGAAGGCTTTAACATCTTGCACTGAAGGTC
TTACAGATGACCCGAAGGATTT
Found at i:689353 original size:42 final size:42
Alignment explanation
Indices: 689294--689636 Score: 185
Period size: 43 Copynumber: 8.0 Consensus size: 42
689284 CTCATTTGAA
* ** *
689294 AACATCATGCATTGAAGGTCTTATGGATGACCCGAAGGCTTT
1 AACATCATGCACTGAAGGTCTTACAGATGACCCGAAGGATTT
*
689336 AACATCTTGCACTGAAGGTCTTACAGATGACCCGAAGGATTT
1 AACATCATGCACTGAAGGTCTTACAGATGACCCGAAGGATTT
* * * * ** ** **
689378 AA-ATTAAGAAACCCCCGAAGG-CTT--AG-T-TTCTAAATCTCATTT
1 AACATCATG----CACTGAAGGTCTTACAGATGACCCGAA--GGATTT
** * **
689420 GAAAACATCATGCACTGAAGGTCTTATGGATGGCCTAAAGGACTTT
1 --A-ACATCATGCACTGAAGGTCTTACAGATGACCCGAAGGA-TTT
* ** **
689466 AACATCTTGCACTGAAGGTCTTATGGATGTTCCGAAGGACTTT
1 AACATCATGCACTGAAGGTCTTACAGATGACCCGAAGGA-TTT
* * * * * *
689509 AACATCTTACATTGAAGGTCTTACGGATGGCCCAAAGGACTTT
1 AACATCATGCACTGAAGGTCTTACAGATGACCCGAAGGA-TTT
* ** *
689552 AACATCTTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTT
1 AACATCATGCACTGAAGGTCTTACAGATGACCCGAAGGA-TTT
* * *
689595 AACATCTTGCACTGAAGGTCTTACAAATAACCCGAAGGATTT
1 AACATCATGCACTGAAGGTCTTACAGATGACCCGAAGGATTT
689637 TAAGTATCAT
Statistics
Matches: 240, Mismatches: 45, Indels: 32
0.76 0.14 0.10
Matches are distributed among these distances:
40 3 0.01
41 4 0.02
42 55 0.23
43 150 0.62
44 5 0.02
45 10 0.04
46 8 0.03
47 5 0.02
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (42 bp):
AACATCATGCACTGAAGGTCTTACAGATGACCCGAAGGATTT
Found at i:689471 original size:43 final size:43
Alignment explanation
Indices: 689423--689617 Score: 309
Period size: 43 Copynumber: 4.5 Consensus size: 43
689413 CTCATTTGAA
* *
689423 AACATCATGCACTGAAGGTCTTATGGATGGCCTAAAGGACTTT
1 AACATCTTGCACTGAAGGTCTTATGGATGGCCCAAAGGACTTT
** *
689466 AACATCTTGCACTGAAGGTCTTATGGATGTTCCGAAGGACTTT
1 AACATCTTGCACTGAAGGTCTTATGGATGGCCCAAAGGACTTT
* * *
689509 AACATCTTACATTGAAGGTCTTACGGATGGCCCAAAGGACTTT
1 AACATCTTGCACTGAAGGTCTTATGGATGGCCCAAAGGACTTT
*
689552 AACATCTTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTT
1 AACATCTTGCACTGAAGGTCTTATGGATGGCCCAAAGGACTTT
689595 AACATCTTGCACTGAAGGTCTTA
1 AACATCTTGCACTGAAGGTCTTA
689618 CAAATAACCC
Statistics
Matches: 137, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 137 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (43 bp):
AACATCTTGCACTGAAGGTCTTATGGATGGCCCAAAGGACTTT
Found at i:689503 original size:130 final size:131
Alignment explanation
Indices: 689270--689510 Score: 387
Period size: 129 Copynumber: 1.8 Consensus size: 131
689260 TCTGAAAGAT
* *
689270 TTAGTTTCTAAAATCTCATTTGAAAACATCATGCATTGAAGGTCTTATGGATGACCCGAAGGCTT
1 TTAGTTTCTAAAATCTCATTTGAAAACATCATGCACTGAAGGTCTTATGGATGACCCAAAGGCTT
689335 TAACATCTTGCACTGAAGGTCTTACAGATGACCCGAAGGA-TTTAAATTAAGAAACCCCCGAAGG
66 TAACATCTTGCACTGAAGGTCTTACAGATGACCCGAAGGACTTTAAATTAAGAAACCCCCGAAGG
689399 C
131 C
* *
689400 TTAGTTTCT-AAATCTCATTTGAAAACATCATGCACTGAAGGTCTTATGGATGGCCTAAAGGACT
1 TTAGTTTCTAAAATCTCATTTGAAAACATCATGCACTGAAGGTCTTATGGATGACCCAAAGG-CT
** **
689464 TTAACATCTTGCACTGAAGGTCTTATGGATGTTCCGAAGGACTTTAA
65 TTAACATCTTGCACTGAAGGTCTTACAGATGACCCGAAGGACTTTAA
689511 CATCTTACAT
Statistics
Matches: 101, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
129 48 0.48
130 48 0.48
131 5 0.05
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.30
Consensus pattern (131 bp):
TTAGTTTCTAAAATCTCATTTGAAAACATCATGCACTGAAGGTCTTATGGATGACCCAAAGGCTT
TAACATCTTGCACTGAAGGTCTTACAGATGACCCGAAGGACTTTAAATTAAGAAACCCCCGAAGG
C
Found at i:689633 original size:86 final size:86
Alignment explanation
Indices: 689456--689639 Score: 278
Period size: 86 Copynumber: 2.1 Consensus size: 86
689446 TGGATGGCCT
** *
689456 AAAGGACTTTAACATCTTGCACTGAAGGTCTTATGGATGTTCCGAAGGACTTTAACATCTTACAT
1 AAAGGACTTTAACATCTTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTTAACATCTTACAC
** **
689521 TGAAGGTCTTACGGATGGCCC
66 TGAAGGTCTTACAAATAACCC
*
689542 AAAGGACTTTAACATCTTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTTAACATCTTGCAC
1 AAAGGACTTTAACATCTTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTTAACATCTTACAC
689607 TGAAGGTCTTACAAATAACCC
66 TGAAGGTCTTACAAATAACCC
* *
689628 GAAGGATTTTAA
1 AAAGGACTTTAA
689640 GTATCATGCT
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
86 88 1.00
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (86 bp):
AAAGGACTTTAACATCTTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTTAACATCTTACAC
TGAAGGTCTTACAAATAACCC
Found at i:691106 original size:75 final size:75
Alignment explanation
Indices: 690980--691155 Score: 246
Period size: 75 Copynumber: 2.4 Consensus size: 75
690970 ACAAGATGAT
* * * *
690980 ATGGGCTTTCAGCAT-CCCCAACATTTACTAATACAAACGTTCAAAATGCATCAACATTCATGTT
1 ATGGGCTTTCAGCATGCCCCAACATTTACTAATAAAAACATTCAAAACGCATCAACATTCATATT
691044 TCTGATTAAA
66 TCTGATTAAA
* * *
691054 ATGGGCTTTCAGCATGCCCCAACATTTGCTGATAAAAACATTCAAAACGCATCAACATTCTTATT
1 ATGGGCTTTCAGCATGCCCCAACATTTACTAATAAAAACATTCAAAACGCATCAACATTCATATT
*
691119 TCTGATTGAA
66 TCTGATTAAA
* * *
691129 TTGGGCTCTCAGCATGCCCCGACATTT
1 ATGGGCTTTCAGCATGCCCCAACATTT
691156 TCTTCTTGTT
Statistics
Matches: 90, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
74 15 0.17
75 75 0.83
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (75 bp):
ATGGGCTTTCAGCATGCCCCAACATTTACTAATAAAAACATTCAAAACGCATCAACATTCATATT
TCTGATTAAA
Found at i:691447 original size:41 final size:40
Alignment explanation
Indices: 691357--691447 Score: 94
Period size: 41 Copynumber: 2.2 Consensus size: 40
691347 ATTGCTGTGA
* *
691357 GCCTTCAAAATGCCCCACATGGATCATTTCAGTTTGAATTAG
1 GCCTTCAAAACGCCCCACAT-G-TCATTTCAGTTTGAAATAG
* * *
691399 GCATTCAAAACGCCCCAACAT-TCTATTTCTGTTTGAAATGG
1 GCCTTCAAAACGCCCC-ACATGTC-ATTTCAGTTTGAAATAG
691440 GCCTTCAA
1 GCCTTCAA
691448 GATGTCCCAC
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
40 2 0.05
41 21 0.51
42 14 0.34
43 4 0.10
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (40 bp):
GCCTTCAAAACGCCCCACATGTCATTTCAGTTTGAAATAG
Found at i:697958 original size:26 final size:26
Alignment explanation
Indices: 697914--697967 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
697904 AAAGGACAAT
*
697914 AATAATAATAAAATAAAATAAAATTA
1 AATAATAACAAAATAAAATAAAATTA
*
697940 AATAATGAACAAAAT-AAATTAAATTA
1 AATAAT-AACAAAATAAAATAAAATTA
697966 AA
1 AA
697968 ACTATAGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 18 0.72
27 7 0.28
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (26 bp):
AATAATAACAAAATAAAATAAAATTA
Found at i:699100 original size:23 final size:22
Alignment explanation
Indices: 699064--699109 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
699054 TTAGGGTTAC
699064 TATTGGGCCTCGGGCCTTCGGGT
1 TATTGGGCCTCGGG-CTTCGGGT
*
699087 TATTGGG-CTCCGGGCTTCTGGT
1 TATTGGGCCT-CGGGCTTCGGGT
699109 T
1 T
699110 GTAATTTCGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 10 0.48
23 11 0.52
ACGTcount: A:0.04, C:0.24, G:0.37, T:0.35
Consensus pattern (22 bp):
TATTGGGCCTCGGGCTTCGGGT
Found at i:699137 original size:3 final size:3
Alignment explanation
Indices: 699129--699206 Score: 102
Period size: 3 Copynumber: 26.0 Consensus size: 3
699119 TTCAGGCCTG
* *
699129 TAA TAA TAA TAA TAT TTA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
699177 TAA TAG TAT TAA TAA TAA TAT TTA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
699207 AAGTAAAAAT
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 64 1.00
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (3 bp):
TAA
Found at i:701932 original size:21 final size:21
Alignment explanation
Indices: 701907--701947 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
701897 TTAAGGGCAT
*
701907 TATTGATACTAATATGCTCAA
1 TATTGATACTAATAGGCTCAA
*
701928 TATTGATACTGATAGGCTCA
1 TATTGATACTAATAGGCTCA
701948 GTATCGGTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.37
Consensus pattern (21 bp):
TATTGATACTAATAGGCTCAA
Found at i:711502 original size:20 final size:20
Alignment explanation
Indices: 711477--711514 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
711467 TTTTTCTTTA
711477 TCTTTCATTATTAA-TTTTTC
1 TCTTTCATT-TTAACTTTTTC
711497 TCTTTCATTTTAACTTTT
1 TCTTTCATTTTAACTTTT
711515 ACCTTTCTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.18, C:0.16, G:0.00, T:0.66
Consensus pattern (20 bp):
TCTTTCATTTTAACTTTTTC
Found at i:711520 original size:19 final size:19
Alignment explanation
Indices: 711473--711521 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
711463 TAACTTTTTC
*
711473 TTTATCTTTCATTATTAAT
1 TTTACCTTTCATTATTAAT
*
711492 TTTTCTCTTTCATT-TTAACT
1 TTTAC-CTTTCATTATTAA-T
711512 TTTACCTTTC
1 TTTACCTTTC
711522 TCTTTCTTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
19 12 0.48
20 13 0.52
ACGTcount: A:0.18, C:0.18, G:0.00, T:0.63
Consensus pattern (19 bp):
TTTACCTTTCATTATTAAT
Found at i:714548 original size:21 final size:21
Alignment explanation
Indices: 714523--714564 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
714513 GGTTTGGTTG
*
714523 AATGGTGTTTAAACTTATTTT
1 AATGGTATTTAAACTTATTTT
**
714544 AATGGTATTTAAGTTTATTTT
1 AATGGTATTTAAACTTATTTT
714565 GGTTCTTATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.02, G:0.14, T:0.55
Consensus pattern (21 bp):
AATGGTATTTAAACTTATTTT
Found at i:715089 original size:220 final size:219
Alignment explanation
Indices: 714702--715141 Score: 805
Period size: 220 Copynumber: 2.0 Consensus size: 219
714692 GAAAAGCAAG
714702 ATAAGATCCTCATAAGCAATGTGATATGATATTTTCAAGGGGCTTTGAACCGGCCTAGGAATATT
1 ATAAGATCCTCATAAGCAATGTGATATGATATTTTCAAGGGGCTTTGAACCGGCCTAGGAATATT
714767 ATAACTTAATCCCTTAGATCTCGGAAGAGACTAGGATAGGATTTCAAACGACTAAAAAGGGTGTC
66 ATAACTTAATCCCTTAGATCTCGGAAGAGACTAGGATAGGATTTCAAACGACTAAAAAGGGTGTC
714832 TTATCAATAGGGTAGGCTGTCCCATCGTTGAGTGAGAGCAGATGCCTTGGCATCCTATTCTGTTA
131 TTATCAATAGGGTAGGCTGTCCCATCGTT-AGTGAGAGCAGATGCCTTGGCATCCTATTCTGTTA
714897 GGTTCTTTTGAACACTTTAGGAAAGC
195 GGTTC-TTTGAACACTTTAGGAAAGC
714923 ATAAGATCCTCATAAGCAATGTGATATGATATTTTCAAGGGGCTTTGAACCGGCCTAGGAATATT
1 ATAAGATCCTCATAAGCAATGTGATATGATATTTTCAAGGGGCTTTGAACCGGCCTAGGAATATT
714988 ATAA-TTAATCCCTTAGATCTCGGAAGAGACTAGGATAGGATTTC-AACGACTAAAAAGGGTGTC
66 ATAACTTAATCCCTTAGATCTCGGAAGAGACTAGGATAGGATTTCAAACGACTAAAAAGGGTGTC
*
715051 TTTATCAATAGGGTAGGCTGTCCAATATCGTT-GTGAGAGCAGATGCCTTGGCATCCTATTCTGT
131 -TTATCAATAGGGTAGGCTGTCC--CATCGTTAGTGAGAGCAGATGCCTTGGCATCCTATTCTGT
715115 TAGGTTCTTTGAACACTTTAGGAAAGC
193 TAGGTTCTTTGAACACTTTAGGAAAGC
715142 TGTCGAGTAA
Statistics
Matches: 215, Mismatches: 1, Indels: 8
0.96 0.00 0.04
Matches are distributed among these distances:
219 39 0.18
220 101 0.47
221 69 0.32
222 6 0.03
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (219 bp):
ATAAGATCCTCATAAGCAATGTGATATGATATTTTCAAGGGGCTTTGAACCGGCCTAGGAATATT
ATAACTTAATCCCTTAGATCTCGGAAGAGACTAGGATAGGATTTCAAACGACTAAAAAGGGTGTC
TTATCAATAGGGTAGGCTGTCCCATCGTTAGTGAGAGCAGATGCCTTGGCATCCTATTCTGTTAG
GTTCTTTGAACACTTTAGGAAAGC
Found at i:715198 original size:59 final size:60
Alignment explanation
Indices: 715106--715224 Score: 231
Period size: 59 Copynumber: 2.0 Consensus size: 60
715096 CCTTGGCATC
715106 CTATTCTGTTAGGTTCTTTGAACACTTTAGGAAAGC-TGTCGAGTAAGTAAAGACCAGTT
1 CTATTCTGTTAGGTTCTTTGAACACTTTAGGAAAGCATGTCGAGTAAGTAAAGACCAGTT
715165 CTATTCTGTTAGGTTCTTTGAACACTTTAGGAAAGCATGTCGAGTAAGTAAAGACCAGTT
1 CTATTCTGTTAGGTTCTTTGAACACTTTAGGAAAGCATGTCGAGTAAGTAAAGACCAGTT
715225 AGCTTAAATA
Statistics
Matches: 59, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
59 36 0.61
60 23 0.39
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (60 bp):
CTATTCTGTTAGGTTCTTTGAACACTTTAGGAAAGCATGTCGAGTAAGTAAAGACCAGTT
Found at i:716139 original size:45 final size:47
Alignment explanation
Indices: 716049--716143 Score: 167
Period size: 45 Copynumber: 2.0 Consensus size: 47
716039 CTAGACGTGC
716049 TTGAGGACAAGGTCAACCGTAGGTACCTAGTGGAGAATCAAGGTCAAG
1 TTGAGGACAAGGTCAACCGTA-GTACCTAGTGGAGAATCAAGGTCAAG
716097 TTGAGGACAAGGTCAACCGT-GTA-CTAGTGGAGAATCAAGGTCAAG
1 TTGAGGACAAGGTCAACCGTAGTACCTAGTGGAGAATCAAGGTCAAG
716142 TT
1 TT
716144 TTCTCTAGTG
Statistics
Matches: 47, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
45 24 0.51
46 3 0.06
48 20 0.43
ACGTcount: A:0.33, C:0.16, G:0.31, T:0.21
Consensus pattern (47 bp):
TTGAGGACAAGGTCAACCGTAGTACCTAGTGGAGAATCAAGGTCAAG
Found at i:717580 original size:19 final size:20
Alignment explanation
Indices: 717540--717580 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
717530 GTTTTTAGAT
*
717540 ATGCTAAGTAGACTTTTGTC
1 ATGCTAAGTAGACTTTTATC
717560 ATGCTAAGCTA-A-TTTTATC
1 ATGCTAAG-TAGACTTTTATC
717579 AT
1 AT
717581 AAGGTGAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
19 8 0.42
20 9 0.47
21 2 0.11
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (20 bp):
ATGCTAAGTAGACTTTTATC
Found at i:724684 original size:13 final size:13
Alignment explanation
Indices: 724666--724702 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
724656 TTTTTTGAAT
724666 AGTGAACAGTAAC
1 AGTGAACAGTAAC
*
724679 AGTGAACAGTATC
1 AGTGAACAGTAAC
*
724692 CGTGAACAGTA
1 AGTGAACAGTA
724703 GGGGAATTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.41, C:0.16, G:0.24, T:0.19
Consensus pattern (13 bp):
AGTGAACAGTAAC
Done.