Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008027.1 Hibiscus syriacus cultivar Beakdansim tig00110503_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7662336
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 11 of 38
Found at i:2254311 original size:54 final size:54
Alignment explanation
Indices: 2254247--2254354 Score: 162
Period size: 54 Copynumber: 2.0 Consensus size: 54
2254237 TTTGACTAAG
* * **
2254247 CAATTAATTTTAAATATTTCATGGAAATTGATTGGGGTTCATGCAATGAAAAAT
1 CAATTAATTTTAAAAATTCCATGGAAATTGAGCGGGGTTCATGCAATGAAAAAT
* *
2254301 CAATTAATTTTAAAAATTCCATGGAGATTGCGCGGGGTTCATGCAATGAAAAAT
1 CAATTAATTTTAAAAATTCCATGGAAATTGAGCGGGGTTCATGCAATGAAAAAT
2254355 TAGCATTATT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (54 bp):
CAATTAATTTTAAAAATTCCATGGAAATTGAGCGGGGTTCATGCAATGAAAAAT
Found at i:2254981 original size:54 final size:54
Alignment explanation
Indices: 2254923--2255029 Score: 151
Period size: 54 Copynumber: 2.0 Consensus size: 54
2254913 ATAAAGCTAT
** ** *
2254923 TTTTTCATTGTATGAACCCCGCGCAATCTCCATTGAATTTTTAAAATTAATTGC
1 TTTTTCATTGTATGAACCCCAAGCAATCTCCATAAAATATTTAAAATTAATTGC
* *
2254977 TTTTTCATTGTATGAACCCCAATCAATTTCCATAAAATATTTAAAATTAATTG
1 TTTTTCATTGTATGAACCCCAAGCAATCTCCATAAAATATTTAAAATTAATTG
2255030 TTTAGTCAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.41
Consensus pattern (54 bp):
TTTTTCATTGTATGAACCCCAAGCAATCTCCATAAAATATTTAAAATTAATTGC
Found at i:2255659 original size:30 final size:30
Alignment explanation
Indices: 2255623--2255685 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
2255613 TTTAAAATAA
2255623 ATTCCTAATTAGTTAAAGAAATATTTTATG
1 ATTCCTAATTAGTTAAAGAAATATTTTATG
2255653 ATTCCTAATTAGTTAAAGAAATATTTTATG
1 ATTCCTAATTAGTTAAAGAAATATTTTATG
2255683 ATT
1 ATT
2255686 TATTGTATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.40, C:0.06, G:0.10, T:0.44
Consensus pattern (30 bp):
ATTCCTAATTAGTTAAAGAAATATTTTATG
Found at i:2261511 original size:38 final size:38
Alignment explanation
Indices: 2261460--2261547 Score: 176
Period size: 38 Copynumber: 2.3 Consensus size: 38
2261450 TTTTCACCTC
2261460 TGAATGATTCAGTGCTGACTGATTCAGCAAAACAGTGT
1 TGAATGATTCAGTGCTGACTGATTCAGCAAAACAGTGT
2261498 TGAATGATTCAGTGCTGACTGATTCAGCAAAACAGTGT
1 TGAATGATTCAGTGCTGACTGATTCAGCAAAACAGTGT
2261536 TGAATGATTCAG
1 TGAATGATTCAG
2261548 CATCAAAGTA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 50 1.00
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.30
Consensus pattern (38 bp):
TGAATGATTCAGTGCTGACTGATTCAGCAAAACAGTGT
Found at i:2261566 original size:27 final size:27
Alignment explanation
Indices: 2261536--2261601 Score: 123
Period size: 27 Copynumber: 2.4 Consensus size: 27
2261526 AAAACAGTGT
2261536 TGAATGATTCAGCATCAAAGTACATTC
1 TGAATGATTCAGCATCAAAGTACATTC
*
2261563 TGAATGATTTAGCATCAAAGTACATTC
1 TGAATGATTCAGCATCAAAGTACATTC
2261590 TGAATGATTCAG
1 TGAATGATTCAG
2261602 AGACATTATC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (27 bp):
TGAATGATTCAGCATCAAAGTACATTC
Found at i:2263927 original size:34 final size:32
Alignment explanation
Indices: 2263865--2263934 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 32
2263855 CCTTACAAAC
* *
2263865 TCCCTAGTTTTTCCGGGCTAAACTAGAACCTT
1 TCCCTAGTTTTACCGGGATAAACTAGAACCTT
*
2263897 TCCCTAGCTTTTACACGGGATAAGCTAGAACCTT
1 TCCCTAG-TTTTAC-CGGGATAAACTAGAACCTT
2263931 TCCC
1 TCCC
2263935 CTTTACAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 7 0.21
33 5 0.15
34 21 0.64
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.31
Consensus pattern (32 bp):
TCCCTAGTTTTACCGGGATAAACTAGAACCTT
Found at i:2264243 original size:21 final size:21
Alignment explanation
Indices: 2264217--2264258 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
2264207 CCAGAATGGG
*
2264217 GGGAATCGGTACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
2264238 GGGAATCGATACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
2264259 ATATTCAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (21 bp):
GGGAATCGATACCCCTTCATA
Found at i:2264396 original size:30 final size:31
Alignment explanation
Indices: 2264349--2264439 Score: 159
Period size: 31 Copynumber: 3.0 Consensus size: 31
2264339 AAATTTTGAA
2264349 TAAATTCAATT-AAGTCCAAAAA-CATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
2264378 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
*
2264409 TAAATTCAATTCAAGTCCAAAAATCATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
2264440 CCTTAAATTG
Statistics
Matches: 59, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
29 11 0.19
30 11 0.19
31 37 0.63
ACGTcount: A:0.43, C:0.16, G:0.07, T:0.34
Consensus pattern (31 bp):
TAAATTCAATTCAAGTCCAAAAACCATTTTG
Found at i:2266631 original size:26 final size:26
Alignment explanation
Indices: 2266598--2266652 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
2266588 GTTAAAATAT
2266598 TATTTTTTTGGTACATTTTACATAAA
1 TATTTTTTTGGTACATTTTACATAAA
2266624 TATTTTTTTGGTACATTTTACATAAA
1 TATTTTTTTGGTACATTTTACATAAA
2266650 TAT
1 TAT
2266653 ATACGTTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.31, C:0.07, G:0.07, T:0.55
Consensus pattern (26 bp):
TATTTTTTTGGTACATTTTACATAAA
Found at i:2270365 original size:3 final size:3
Alignment explanation
Indices: 2270306--2270353 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
2270296 ATATTGTTAA
2270306 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
2270354 TGTTAATAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:2278109 original size:42 final size:44
Alignment explanation
Indices: 2278041--2278138 Score: 103
Period size: 42 Copynumber: 2.3 Consensus size: 44
2278031 TAAAAAAATG
* ** *
2278041 AATAAGTTGGAGAAGTTACTAATAGCTCTGACA-A-TTTTAGGA
1 AATAAGTTGGAAAAGTTACTAATAGCTCCAACATAGTCTTAGGA
* *
2278083 AATAAGTTGGAAAATTTGA-TACTAGCTCCAACATAGTCTTAGGA
1 AATAAGTTGGAAAAGTT-ACTAATAGCTCCAACATAGTCTTAGGA
*
2278127 AATAAGATGGAA
1 AATAAGTTGGAA
2278139 GTTTCCAATA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
42 26 0.57
43 2 0.04
44 18 0.39
ACGTcount: A:0.41, C:0.10, G:0.20, T:0.29
Consensus pattern (44 bp):
AATAAGTTGGAAAAGTTACTAATAGCTCCAACATAGTCTTAGGA
Found at i:2280445 original size:19 final size:19
Alignment explanation
Indices: 2280423--2280470 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
2280413 TAACCCCTAA
2280423 GTATCGATACCCACCCTTG
1 GTATCGATACCCACCCTTG
* *
2280442 GTATTGATACCCATCCTTG
1 GTATCGATACCCACCCTTG
2280461 GTATCGATAC
1 GTATCGATAC
2280471 TGAAAATGGC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.23, C:0.29, G:0.17, T:0.31
Consensus pattern (19 bp):
GTATCGATACCCACCCTTG
Found at i:2288448 original size:13 final size:13
Alignment explanation
Indices: 2288430--2288459 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
2288420 TGTATATGCA
*
2288430 ATTTAATTTTTTT
1 ATTTAATATTTTT
2288443 ATTTAATATTTTT
1 ATTTAATATTTTT
2288456 ATTT
1 ATTT
2288460 CATACAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (13 bp):
ATTTAATATTTTT
Found at i:2306123 original size:30 final size:30
Alignment explanation
Indices: 2306087--2306161 Score: 105
Period size: 30 Copynumber: 2.5 Consensus size: 30
2306077 AAAACTGAAT
*
2306087 TAAACGGGGACGGGGAAAAACTGTTTATGC
1 TAAACGGGGACGGGGAAAAACTATTTATGC
* * *
2306117 TAAACGGGGATGGTGAAAAACTATTTATGT
1 TAAACGGGGACGGGGAAAAACTATTTATGC
*
2306147 TAAACGGAGACGGGG
1 TAAACGGGGACGGGG
2306162 TTAGTAATCC
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.35, C:0.11, G:0.33, T:0.21
Consensus pattern (30 bp):
TAAACGGGGACGGGGAAAAACTATTTATGC
Found at i:2306328 original size:12 final size:12
Alignment explanation
Indices: 2306311--2306341 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
2306301 TTAAATATAT
2306311 ATACCCGGCCCG
1 ATACCCGGCCCG
*
2306323 ATACCCAGCCCG
1 ATACCCGGCCCG
2306335 ATACCCG
1 ATACCCG
2306342 TTTAATTAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.48, G:0.19, T:0.10
Consensus pattern (12 bp):
ATACCCGGCCCG
Found at i:2307181 original size:3 final size:3
Alignment explanation
Indices: 2307173--2307199 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
2307163 CATGGCAAAG
2307173 CAA CAA CAA CAA CAA CAA CAA CAA CAA
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA
2307200 AACCCTATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.33, G:0.00, T:0.00
Consensus pattern (3 bp):
CAA
Found at i:2317582 original size:2 final size:2
Alignment explanation
Indices: 2317575--2317629 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
2317565 TGTCCACCCC
2317575 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2317617 AT AT AT AT AT AT A
1 AT AT AT AT AT AT A
2317630 ACGAAAAAAA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:2323757 original size:24 final size:23
Alignment explanation
Indices: 2323730--2323774 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
2323720 CTAGAATCTA
2323730 GCACCTCTGTGATTCTAAAATTTG
1 GCACCTCTGTGATT-TAAAATTTG
* *
2323754 GCACCTGTGTGCTTTAAAATT
1 GCACCTCTGTGATTTAAAATT
2323775 GACTGAGCAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (23 bp):
GCACCTCTGTGATTTAAAATTTG
Found at i:2327304 original size:22 final size:22
Alignment explanation
Indices: 2327274--2327316 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
2327264 CGGTTTATTA
2327274 AATAACTATATAAATATTAGTT
1 AATAACTATATAAATATTAGTT
* *
2327296 AATAGCTATATAAATGTTAGT
1 AATAACTATATAAATATTAGT
2327317 ATTTTTAAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.47, C:0.05, G:0.09, T:0.40
Consensus pattern (22 bp):
AATAACTATATAAATATTAGTT
Found at i:2330593 original size:31 final size:31
Alignment explanation
Indices: 2330555--2330617 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
2330545 CCCAAGAGTT
* *
2330555 TGGGAGTTCCTAGTGAGAATGACATATTGAA
1 TGGGAGTTCCTAGTAAGAAGGACATATTGAA
2330586 TGGGAGTTCCTAGTAAGAAGGACATATTGAA
1 TGGGAGTTCCTAGTAAGAAGGACATATTGAA
2330617 T
1 T
2330618 TCACCAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.29
Consensus pattern (31 bp):
TGGGAGTTCCTAGTAAGAAGGACATATTGAA
Found at i:2334476 original size:23 final size:23
Alignment explanation
Indices: 2334450--2334494 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
2334440 CACCACAGCT
*
2334450 CGTATAATTGCACCGAAGTGCCG
1 CGTAGAATTGCACCGAAGTGCCG
*
2334473 CGTAGAATTGCACCGTAGTGCC
1 CGTAGAATTGCACCGAAGTGCC
2334495 ATATAATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (23 bp):
CGTAGAATTGCACCGAAGTGCCG
Found at i:2334736 original size:151 final size:149
Alignment explanation
Indices: 2334462--2334778 Score: 539
Period size: 151 Copynumber: 2.1 Consensus size: 149
2334452 TATAATTGCA
2334462 CCGAAGTG-CCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAA
1 CCGAAG-GACCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAA
**
2334526 TTCCTTAAGAATCATATACATATGCTAGGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTT
65 TTCCTTAAGAATCATATACATATGCTAGGGATCAAGTATGTGTCTCACAAGACTTCACACATGTT
*
2334591 CCACAGAATATATATATATATC
130 CCAAAG-A-ATATATATATATC
*
2334613 CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAAT
1 CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAAT
*
2334678 TCCTTAAGAATCATATACATATGCTAGGGATCATA-TATGTGTCTCACCAGACTTCACACATGTT
66 TCCTTAAGAATCATATACATATGCTAGGGATCA-AGTATGTGTCTCACAAGACTTCACACATGTT
2334742 CCAAAGAATATATATATATC
130 CCAAAGAATATATATATATC
2334762 CCGAAGGACCGCGTAGA
1 CCGAAGGACCGCGTAGA
2334779 CCCTCGACTC
Statistics
Matches: 159, Mismatches: 5, Indels: 6
0.94 0.03 0.04
Matches are distributed among these distances:
149 30 0.19
150 2 0.01
151 126 0.79
152 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.26
Consensus pattern (149 bp):
CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAAT
TCCTTAAGAATCATATACATATGCTAGGGATCAAGTATGTGTCTCACAAGACTTCACACATGTTC
CAAAGAATATATATATATC
Found at i:2335335 original size:2 final size:2
Alignment explanation
Indices: 2335328--2335373 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
2335318 TCTCTTAGAC
2335328 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2335370 AT AT
1 AT AT
2335374 CACATGTTCA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2335727 original size:18 final size:18
Alignment explanation
Indices: 2335706--2335740 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
2335696 TCCCATCTAG
2335706 CTTATC-TTATATGTTCAT
1 CTTATCATT-TATGTTCAT
2335724 CTTATCATTTATGTTCA
1 CTTATCATTTATGTTCA
2335741 AATCTCCTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.23, C:0.17, G:0.06, T:0.54
Consensus pattern (18 bp):
CTTATCATTTATGTTCAT
Found at i:2336330 original size:64 final size:63
Alignment explanation
Indices: 2336232--2336392 Score: 200
Period size: 64 Copynumber: 2.5 Consensus size: 63
2336222 TAATGAAGGT
* *
2336232 ATGCATCGATGCACTACACCATGCATCGATGCATAAATCCTATTCGATG-TTTGTATTT-AATGG
1 ATGCATCGATGCACT-C-CTATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTAAAT--
*
2336295 GG
62 GC
*
2336297 ATGCATCGATGCACTCCTTATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTAAATTC
1 ATGCATCGATGCACTCC-TATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTAAATGC
* *
2336361 ATGCATCGATGCACTGCATGTGCATCGATGCA
1 ATGCATCGATGCACT-CCTATGCATCGATGCA
2336393 CCTTAAACAA
Statistics
Matches: 86, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
63 1 0.01
64 58 0.67
65 24 0.28
66 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.34
Consensus pattern (63 bp):
ATGCATCGATGCACTCCTATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTAAATGC
Found at i:2337210 original size:19 final size:19
Alignment explanation
Indices: 2337186--2337249 Score: 93
Period size: 19 Copynumber: 3.6 Consensus size: 19
2337176 TAAAGTTTGT
2337186 GATTTAGAGTTTTAATCTA
1 GATTTAGAGTTTTAATCTA
2337205 GATTTAGAG-TTT-A--T-
1 GATTTAGAGTTTTAATCTA
2337219 GATTTAGAGTTTTAATCTA
1 GATTTAGAGTTTTAATCTA
2337238 GATTTAGAGTTT
1 GATTTAGAGTTT
2337250 AAGGTTTAGG
Statistics
Matches: 40, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
14 9 0.22
15 4 0.10
16 1 0.03
17 1 0.03
18 4 0.10
19 21 0.52
ACGTcount: A:0.30, C:0.03, G:0.19, T:0.48
Consensus pattern (19 bp):
GATTTAGAGTTTTAATCTA
Found at i:2337222 original size:33 final size:33
Alignment explanation
Indices: 2337174--2337265 Score: 141
Period size: 33 Copynumber: 2.8 Consensus size: 33
2337164 GGGTTAAGGG
* *
2337174 TTTAAAGTTTGTGATTTAGAGTTTTAATCTAGA
1 TTTAGAGTTTATGATTTAGAGTTTTAATCTAGA
2337207 TTTAGAGTTTATGATTTAGAGTTTTAATCTAGA
1 TTTAGAGTTTATGATTTAGAGTTTTAATCTAGA
* *
2337240 TTTAGAGTTTAAGGTTTAG-GTTTTAA
1 TTTAGAGTTTATGATTTAGAGTTTTAA
2337266 GATGATATAA
Statistics
Matches: 55, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
32 7 0.13
33 48 0.87
ACGTcount: A:0.29, C:0.02, G:0.20, T:0.49
Consensus pattern (33 bp):
TTTAGAGTTTATGATTTAGAGTTTTAATCTAGA
Found at i:2337625 original size:14 final size:14
Alignment explanation
Indices: 2337606--2337672 Score: 88
Period size: 14 Copynumber: 5.1 Consensus size: 14
2337596 CGTTTGTGAA
2337606 CGTTCGGTTATGTT
1 CGTTCGGTTATGTT
2337620 CGTTCGGTTATGTT
1 CGTTCGGTTATGTT
2337634 CG-T---TTATGTT
1 CGTTCGGTTATGTT
*
2337644 CGTTCAGTTATGTT
1 CGTTCGGTTATGTT
*
2337658 CGTTCGATTATGTT
1 CGTTCGGTTATGTT
2337672 C
1 C
2337673 ATTTATGTTC
Statistics
Matches: 47, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
10 9 0.19
11 1 0.02
13 1 0.02
14 36 0.77
ACGTcount: A:0.10, C:0.15, G:0.24, T:0.51
Consensus pattern (14 bp):
CGTTCGGTTATGTT
Found at i:2337638 original size:38 final size:38
Alignment explanation
Indices: 2337596--2337679 Score: 114
Period size: 38 Copynumber: 2.2 Consensus size: 38
2337586 GATCAATTTA
* * *
2337596 CGTTTGTGAACGTTCGGTTATGTTCGTTCGGTTATGTT
1 CGTTTATGAACGTTCAGTTATGTTCGTTCGATTATGTT
**
2337634 CGTTTATGTTCGTTCAGTTATGTTCGTTCGATTATGTT
1 CGTTTATGAACGTTCAGTTATGTTCGTTCGATTATGTT
*
2337672 CATTTATG
1 CGTTTATG
2337680 TTCATTCATT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.13, C:0.13, G:0.24, T:0.50
Consensus pattern (38 bp):
CGTTTATGAACGTTCAGTTATGTTCGTTCGATTATGTT
Found at i:2337660 original size:24 final size:24
Alignment explanation
Indices: 2337607--2337661 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
2337597 GTTTGTGAAC
* *
2337607 GTTCGGTTATGTTCGTTCGGTTAT
1 GTTCGTTTATGTTCGTTCAGTTAT
2337631 GTTCGTTTATGTTCGTTCAGTTAT
1 GTTCGTTTATGTTCGTTCAGTTAT
2337655 GTTCGTT
1 GTTCGTT
2337662 CGATTATGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.09, C:0.13, G:0.25, T:0.53
Consensus pattern (24 bp):
GTTCGTTTATGTTCGTTCAGTTAT
Found at i:2337672 original size:24 final size:24
Alignment explanation
Indices: 2337645--2337695 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
2337635 GTTTATGTTC
*
2337645 GTTCAGTTATGTTCGTTCGA-TTAT
1 GTTCAGTTATGTTCATTC-ATTTAT
*
2337669 GTTCATTTATGTTCATTCATTTAT
1 GTTCAGTTATGTTCATTCATTTAT
2337693 GTT
1 GTT
2337696 TAACTCAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 1 0.04
24 23 0.96
ACGTcount: A:0.18, C:0.12, G:0.16, T:0.55
Consensus pattern (24 bp):
GTTCAGTTATGTTCATTCATTTAT
Found at i:2337680 original size:38 final size:38
Alignment explanation
Indices: 2337606--2337695 Score: 135
Period size: 38 Copynumber: 2.4 Consensus size: 38
2337596 CGTTTGTGAA
* * *
2337606 CGTTCGGTTATGTTCGTTCGGTTATGTTCGTTTATGTT
1 CGTTCAGTTATGTTCGTTCGATTATGTTCATTTATGTT
2337644 CGTTCAGTTATGTTCGTTCGATTATGTTCATTTATGTT
1 CGTTCAGTTATGTTCGTTCGATTATGTTCATTTATGTT
* *
2337682 CATTCATTTATGTT
1 CGTTCAGTTATGTT
2337696 TAACTCAATC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 47 1.00
ACGTcount: A:0.13, C:0.13, G:0.20, T:0.53
Consensus pattern (38 bp):
CGTTCAGTTATGTTCGTTCGATTATGTTCATTTATGTT
Found at i:2338623 original size:16 final size:16
Alignment explanation
Indices: 2338602--2338684 Score: 125
Period size: 16 Copynumber: 5.3 Consensus size: 16
2338592 GTCTCCAACG
2338602 TTTATGTTCGTGTTCA
1 TTTATGTTCGTGTTCA
*
2338618 TTTATGTTCGTGTTCG
1 TTTATGTTCGTGTTCA
*
2338634 TTTATGTTCGTGTTCG
1 TTTATGTTCGTGTTCA
*
2338650 TTTATGTTCGTGTTCT
1 TTTATGTTCGTGTTCA
2338666 TTTATGTTCGT-TT-A
1 TTTATGTTCGTGTTCA
2338680 TTTAT
1 TTTAT
2338685 TAAAAGAACG
Statistics
Matches: 64, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
14 5 0.08
15 2 0.03
16 57 0.89
ACGTcount: A:0.10, C:0.11, G:0.19, T:0.60
Consensus pattern (16 bp):
TTTATGTTCGTGTTCA
Found at i:2338641 original size:32 final size:32
Alignment explanation
Indices: 2338600--2338684 Score: 138
Period size: 32 Copynumber: 2.7 Consensus size: 32
2338590 GGGTCTCCAA
2338600 CGTTTATGTTCGTGTTCATTTATGTTCGTGTT
1 CGTTTATGTTCGTGTTCATTTATGTTCGTGTT
*
2338632 CGTTTATGTTCGTGTTCGTTTATGTTCGTGTT
1 CGTTTATGTTCGTGTTCATTTATGTTCGTGTT
*
2338664 CTTTTATGTTCGT-TT-ATTTAT
1 CGTTTATGTTCGTGTTCATTTAT
2338685 TAAAAGAACG
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
30 5 0.10
31 2 0.04
32 43 0.86
ACGTcount: A:0.09, C:0.12, G:0.20, T:0.59
Consensus pattern (32 bp):
CGTTTATGTTCGTGTTCATTTATGTTCGTGTT
Found at i:2338766 original size:16 final size:16
Alignment explanation
Indices: 2338745--2338777 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
2338735 AAAAAAAATT
*
2338745 TGTTCGTTTATGTTCG
1 TGTTCGTTTATATTCG
2338761 TGTTCGTTTATATTCG
1 TGTTCGTTTATATTCG
2338777 T
1 T
2338778 TTATTTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.09, C:0.12, G:0.21, T:0.58
Consensus pattern (16 bp):
TGTTCGTTTATATTCG
Found at i:2343089 original size:21 final size:21
Alignment explanation
Indices: 2343063--2343282 Score: 195
Period size: 21 Copynumber: 10.6 Consensus size: 21
2343053 GTTTCCAGAT
*
2343063 TCGCAACGCGAACTTCGACTA
1 TCGCAATGCGAACTTCGACTA
2343084 TCGCAATGCGAACTTCGACTA
1 TCGCAATGCGAACTTCGACTA
** *
2343105 TCGCAATATGAACTTGGACTA
1 TCGCAATGCGAACTTCGACTA
*
2343126 TCGCAATGCGAA-TAT-GTA-AA
1 TCGCAATGCGAACT-TCG-ACTA
*
2343146 TCGCAATGCGATA-GTCGACTA
1 TCGCAATGCGA-ACTTCGACTA
* * *
2343167 TCGCAATACAAACTTGGACTA
1 TCGCAATGCGAACTTCGACTA
*
2343188 TCGCAACGCGAACTTCGACTA
1 TCGCAATGCGAACTTCGACTA
* * *
2343209 TCTCAATGCGAACATGGACTA
1 TCGCAATGCGAACTTCGACTA
*
2343230 TCGCAATGCGAA-TAT-GTA-AA
1 TCGCAATGCGAACT-TCG-ACTA
*
2343250 TCGCAATGCGATA-GTCGACTA
1 TCGCAATGCGA-ACTTCGACTA
2343271 TCGCAATGCGAA
1 TCGCAATGCGAA
2343283 TATGTAAATC
Statistics
Matches: 162, Mismatches: 26, Indels: 23
0.77 0.12 0.11
Matches are distributed among these distances:
20 33 0.20
21 129 0.80
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (21 bp):
TCGCAATGCGAACTTCGACTA
Found at i:2343149 original size:62 final size:62
Alignment explanation
Indices: 2343083--2343199 Score: 182
Period size: 62 Copynumber: 1.9 Consensus size: 62
2343073 AACTTCGACT
* ** *
2343083 ATCGCAATGCGA-ACTTCGACTATCGCAATATGAACTTGGACTATCGCAATGCGAATATGTAA
1 ATCGCAATGCGATA-GTCGACTATCGCAATACAAACTTGGACTATCGCAACGCGAATATGTAA
2343145 ATCGCAATGCGATAGTCGACTATCGCAATACAAACTTGGACTATCGCAACGCGAA
1 ATCGCAATGCGATAGTCGACTATCGCAATACAAACTTGGACTATCGCAACGCGAA
2343200 CTTCGACTAT
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
62 49 0.98
63 1 0.02
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (62 bp):
ATCGCAATGCGATAGTCGACTATCGCAATACAAACTTGGACTATCGCAACGCGAATATGTAA
Found at i:2343150 original size:83 final size:83
Alignment explanation
Indices: 2343063--2343220 Score: 210
Period size: 83 Copynumber: 1.9 Consensus size: 83
2343053 GTTTCCAGAT
* * * * * *
2343063 TCGCAACGCGA-ACTTCGACTATCGCAATGCGAACTTCGACTATCGCAATATGAACTTGGACTAT
1 TCGCAACGCGATA-GTCGACTATCGCAATACAAACTTCGACTATCGCAACACGAACTTCGACTAT
2343127 CGCAATGCGAATATGTAAA
65 CGCAATGCGAATATGTAAA
* * *
2343146 TCGCAATGCGATAGTCGACTATCGCAATACAAACTTGGACTATCGCAACGCGAACTTCGACTATC
1 TCGCAACGCGATAGTCGACTATCGCAATACAAACTTCGACTATCGCAACACGAACTTCGACTATC
*
2343211 TCAATGCGAA
66 GCAATGCGAA
2343221 CATGGACTAT
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
83 63 0.98
84 1 0.02
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.23
Consensus pattern (83 bp):
TCGCAACGCGATAGTCGACTATCGCAATACAAACTTCGACTATCGCAACACGAACTTCGACTATC
GCAATGCGAATATGTAAA
Found at i:2343191 original size:104 final size:104
Alignment explanation
Indices: 2343073--2343277 Score: 356
Period size: 104 Copynumber: 2.0 Consensus size: 104
2343063 TCGCAACGCG
* * *
2343073 AACTTCGACTATCGCAATGCGAACTTCGACTATCGCAATATGAACTTGGACTATCGCAATGCGAA
1 AACTTCGACTATCGCAACGCGAACTTCGACTATCGCAATACGAACATGGACTATCGCAATGCGAA
2343138 TATGTAAATCGCAATGCGATAGTCGACTATCGCAATACA
66 TATGTAAATCGCAATGCGATAGTCGACTATCGCAATACA
* * *
2343177 AACTTGGACTATCGCAACGCGAACTTCGACTATCTCAATGCGAACATGGACTATCGCAATGCGAA
1 AACTTCGACTATCGCAACGCGAACTTCGACTATCGCAATACGAACATGGACTATCGCAATGCGAA
2343242 TATGTAAATCGCAATGCGATAGTCGACTATCGCAAT
66 TATGTAAATCGCAATGCGATAGTCGACTATCGCAAT
2343278 GCGAATATGT
Statistics
Matches: 95, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
104 95 1.00
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.24
Consensus pattern (104 bp):
AACTTCGACTATCGCAACGCGAACTTCGACTATCGCAATACGAACATGGACTATCGCAATGCGAA
TATGTAAATCGCAATGCGATAGTCGACTATCGCAATACA
Found at i:2343254 original size:20 final size:20
Alignment explanation
Indices: 2343229--2343301 Score: 96
Period size: 20 Copynumber: 3.6 Consensus size: 20
2343219 AACATGGACT
2343229 ATCGCAATGCGAATATGTAA
1 ATCGCAATGCGAATATGTAA
*
2343249 ATCGCAATGCG-ATA-GTCGACT
1 ATCGCAATGCGAATATGT--A-A
2343270 ATCGCAATGCGAATATGTAA
1 ATCGCAATGCGAATATGTAA
2343290 ATCGCAATGCGA
1 ATCGCAATGCGA
2343302 TAGTCGAAGT
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
18 2 0.04
19 3 0.07
20 24 0.52
21 12 0.26
22 3 0.07
23 2 0.04
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23
Consensus pattern (20 bp):
ATCGCAATGCGAATATGTAA
Found at i:2343322 original size:41 final size:41
Alignment explanation
Indices: 2343225--2343308 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
2343215 TGCGAACATG
2343225 GACTATCGCAATGCGAATATGTAAATCGCAATGCGATAGTC
1 GACTATCGCAATGCGAATATGTAAATCGCAATGCGATAGTC
2343266 GACTATCGCAATGCGAATATGTAAATCGCAATGCGATAGTC
1 GACTATCGCAATGCGAATATGTAAATCGCAATGCGATAGTC
2343307 GA
1 GA
2343309 AGTTTGTGTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.24
Consensus pattern (41 bp):
GACTATCGCAATGCGAATATGTAAATCGCAATGCGATAGTC
Found at i:2343410 original size:41 final size:41
Alignment explanation
Indices: 2343353--2343430 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 41
2343343 ATAGTCCAAG
2343353 TTCGCATTGCGATAGTCG-ACTATCGCATTGCGATTTACATA
1 TTCGCATTGCGATAGTCGAACT-TCGCATTGCGATTTACATA
* *
2343394 TTCGCATTGCGATAGTCGAAGTTCGCGTTGCGATTTA
1 TTCGCATTGCGATAGTCGAACTTCGCATTGCGATTTA
2343431 TTCCAAATTC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
41 32 0.94
42 2 0.06
ACGTcount: A:0.22, C:0.21, G:0.23, T:0.35
Consensus pattern (41 bp):
TTCGCATTGCGATAGTCGAACTTCGCATTGCGATTTACATA
Found at i:2343424 original size:21 final size:21
Alignment explanation
Indices: 2343291--2343427 Score: 120
Period size: 21 Copynumber: 6.6 Consensus size: 21
2343281 AATATGTAAA
*
2343291 TCGCAATGCGATAGTCGAAGT
1 TCGCATTGCGATAGTCGAAGT
* **
2343312 TTGTGTTGCGATAGTCGAAGT
1 TCGCATTGCGATAGTCGAAGT
* ** *
2343333 TTGTGTTGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCGAAGT
*
2343354 TCGCATTGCGATAGTCG-ACT
1 TCGCATTGCGATAGTCGAAGT
*
2343374 ATCGCATTGCGAT-TTAC-ATA-T
1 -TCGCATTGCGATAGT-CGA-AGT
2343395 TCGCATTGCGATAGTCGAAGT
1 TCGCATTGCGATAGTCGAAGT
*
2343416 TCGCGTTGCGAT
1 TCGCATTGCGAT
2343428 TTATTCCAAA
Statistics
Matches: 96, Mismatches: 13, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
20 17 0.18
21 78 0.81
22 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (21 bp):
TCGCATTGCGATAGTCGAAGT
Found at i:2343462 original size:104 final size:104
Alignment explanation
Indices: 2343247--2343463 Score: 246
Period size: 104 Copynumber: 2.1 Consensus size: 104
2343237 GCGAATATGT
2343247 AAATCGCAATGCGATAGTCGACTATCGCAATGCGAATATGTAAATCGCAATGCGATAGTCGAAGT
1 AAATCGCAATGCGATAGTCGACTATCGCAATGCGAATATGTAAATCGCAATGCGATAGTCGAAGT
* * * * **
2343312 TTGTGTTGCGATAGTCGAAGTTTGTGTTGCGATAGTCCA
66 TCGCGTTGCGATAGTCCAAGATTGCATTGCGATAGTCCA
** * * *
2343351 AGTTCGCATTGCGATAGTCGACTATCGCATTGCG-AT-T-TACATATTCGCATTGCGATAGTCGA
1 AAATCGCAATGCGATAGTCGACTATCGCAATGCGAATATGTA-A-A-TCGCAATGCGATAGTCGA
*
2343413 AGTTCGCGTTGCGATTTATTCCAA-ATT-CATTGCGATAGTCCA
63 AGTTCGCGTTGCGA--TAGTCCAAGATTGCATTGCGATAGTCCA
2343455 AAATCGCAA
1 AAATCGCAA
2343464 CGACTGGTGG
Statistics
Matches: 93, Mismatches: 15, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
101 2 0.02
102 2 0.02
103 3 0.03
104 78 0.84
105 2 0.02
106 6 0.06
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (104 bp):
AAATCGCAATGCGATAGTCGACTATCGCAATGCGAATATGTAAATCGCAATGCGATAGTCGAAGT
TCGCGTTGCGATAGTCCAAGATTGCATTGCGATAGTCCA
Found at i:2343560 original size:6 final size:6
Alignment explanation
Indices: 2343551--2343594 Score: 81
Period size: 6 Copynumber: 7.5 Consensus size: 6
2343541 TATTACTATT
2343551 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACC-CG ACC
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACC
2343595 CGAGACGAGA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 5 0.13
6 33 0.87
ACGTcount: A:0.32, C:0.52, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:2344230 original size:42 final size:42
Alignment explanation
Indices: 2344171--2344341 Score: 231
Period size: 42 Copynumber: 4.1 Consensus size: 42
2344161 TTTTTACATA
*
2344171 TTCGCATTGAGATAGTCCAAGTTCGCATTGCGATAGTCGAAG
1 TTCGCATTGCGATAGTCCAAGTTCGCATTGCGATAGTCGAAG
* * * *
2344213 TTCGCGTTGCGATAGTCCAAGTTCACGTTGCGATAGTCG-AC
1 TTCGCATTGCGATAGTCCAAGTTCGCATTGCGATAGTCGAAG
* *
2344254 TATCGCATTGCGAT-TTACATA-TTCGCATTGCGATAGTCGAAG
1 T-TCGCATTGCGATAGTCCA-AGTTCGCATTGCGATAGTCGAAG
*
2344296 TTCGCATTGCGATAGTCAAAGTTCGCATTGCGATAGTCGAAG
1 TTCGCATTGCGATAGTCCAAGTTCGCATTGCGATAGTCGAAG
2344338 TTCG
1 TTCG
2344342 TGTTGCGAAT
Statistics
Matches: 110, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
41 34 0.31
42 76 0.69
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.30
Consensus pattern (42 bp):
TTCGCATTGCGATAGTCCAAGTTCGCATTGCGATAGTCGAAG
Found at i:2344297 original size:62 final size:62
Alignment explanation
Indices: 2344213--2344329 Score: 164
Period size: 62 Copynumber: 1.9 Consensus size: 62
2344203 ATAGTCGAAG
* * *
2344213 TTCGCGTTGCGATAGTCCAAGTTCACGTTGCGATAGTC-GACTATCGCATTGCGATTTACATA
1 TTCGCATTGCGATAGTCCAAGTTCACATTGCGATAGTCAAACT-TCGCATTGCGATTTACATA
* * *
2344275 TTCGCATTGCGATAGTCGAAGTTCGCATTGCGATAGTCAAAGTTCGCATTGCGAT
1 TTCGCATTGCGATAGTCCAAGTTCACATTGCGATAGTCAAACTTCGCATTGCGAT
2344330 AGTCGAAGTT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
62 46 0.96
63 2 0.04
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (62 bp):
TTCGCATTGCGATAGTCCAAGTTCACATTGCGATAGTCAAACTTCGCATTGCGATTTACATA
Found at i:2344349 original size:21 final size:21
Alignment explanation
Indices: 2344171--2344341 Score: 206
Period size: 21 Copynumber: 8.2 Consensus size: 21
2344161 TTTTTACATA
* *
2344171 TTCGCATTGAGATAGTCCAAG
1 TTCGCATTGCGATAGTCGAAG
2344192 TTCGCATTGCGATAGTCGAAG
1 TTCGCATTGCGATAGTCGAAG
* *
2344213 TTCGCGTTGCGATAGTCCAAG
1 TTCGCATTGCGATAGTCGAAG
* * *
2344234 TTCACGTTGCGATAGTCG-AC
1 TTCGCATTGCGATAGTCGAAG
*
2344254 TATCGCATTGCGAT-TTAC-ATA-
1 T-TCGCATTGCGATAGT-CGA-AG
2344275 TTCGCATTGCGATAGTCGAAG
1 TTCGCATTGCGATAGTCGAAG
*
2344296 TTCGCATTGCGATAGTCAAAG
1 TTCGCATTGCGATAGTCGAAG
2344317 TTCGCATTGCGATAGTCGAAG
1 TTCGCATTGCGATAGTCGAAG
2344338 TTCG
1 TTCG
2344342 TGTTGCGAAT
Statistics
Matches: 130, Mismatches: 13, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
20 17 0.13
21 112 0.86
22 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.30
Consensus pattern (21 bp):
TTCGCATTGCGATAGTCGAAG
Found at i:2347863 original size:34 final size:34
Alignment explanation
Indices: 2347822--2347887 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 34
2347812 TAAAATGAGT
*
2347822 GTATATGTTTAATTTTTAAAT-TTAAAAGATATTA
1 GTATATGTTTAA-ATTTAAATATTAAAAGATATTA
*
2347856 GTATATGTTTAAATTTAGATATTAAAAGATAT
1 GTATATGTTTAAATTTAAATATTAAAAGATAT
2347888 ATGGTTAGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 6 0.21
34 23 0.79
ACGTcount: A:0.42, C:0.00, G:0.11, T:0.47
Consensus pattern (34 bp):
GTATATGTTTAAATTTAAATATTAAAAGATATTA
Found at i:2347983 original size:83 final size:82
Alignment explanation
Indices: 2347829--2347990 Score: 236
Period size: 83 Copynumber: 2.0 Consensus size: 82
2347819 AGTGTATATG
* * *
2347829 TTTAATTTTTAAATTTAAAAGATATTAGTATATGTTTAAATTTAGATATTAAAAGATATATGGTT
1 TTTAATTTTTAAATTGAAAAGATATTAGTATATGTTTAAATTTAGATATTAAAAGATATATGATG
*
2347894 AGAGTAAATCTCTCAGA
66 AGAGTAAAACTCTCAGA
* * *
2347911 TTTAATATTTTAAATTGAAAAGATATTATTATATTTTTAAATTTAGATATTAAAAGATATTTAGA
1 TTTAAT-TTTTAAATTGAAAAGATATTAGTATATGTTTAAATTTAGATATTAAAAGATATAT-GA
2347976 TGA-AGTAAAACTCTC
64 TGAGAGTAAAACTCTC
2347991 TCGAAATTCC
Statistics
Matches: 71, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
82 6 0.08
83 62 0.87
84 3 0.04
ACGTcount: A:0.43, C:0.04, G:0.10, T:0.43
Consensus pattern (82 bp):
TTTAATTTTTAAATTGAAAAGATATTAGTATATGTTTAAATTTAGATATTAAAAGATATATGATG
AGAGTAAAACTCTCAGA
Found at i:2348104 original size:24 final size:22
Alignment explanation
Indices: 2348064--2348108 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 22
2348054 GTTTTCTTTC
2348064 TCTTGAAAATATTTTCTCTCCT
1 TCTTGAAAATATTTTCTCTCCT
2348086 TCTTAGAAAATATTCTTCTCTCC
1 TCTT-GAAAATATT-TTCTCTCC
2348109 CTTAGTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 4 0.19
23 9 0.43
24 8 0.38
ACGTcount: A:0.24, C:0.24, G:0.04, T:0.47
Consensus pattern (22 bp):
TCTTGAAAATATTTTCTCTCCT
Found at i:2348112 original size:22 final size:22
Alignment explanation
Indices: 2348055--2348113 Score: 70
Period size: 22 Copynumber: 2.7 Consensus size: 22
2348045 ATTCAAGAAG
*
2348055 TTTTCT-TTCTCTT-GAAAATA
1 TTTTCTCTCCTCTTAGAAAATA
2348075 TTTTCTCTCCTTCTTAGAAAATA
1 TTTTCTCTCC-TCTTAGAAAATA
2348098 TTCTTCTCTCC-CTTAG
1 TT-TTCTCTCCTCTTAG
2348114 TTTTTTCAGT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
20 6 0.18
21 2 0.06
22 9 0.26
23 9 0.26
24 8 0.24
ACGTcount: A:0.20, C:0.24, G:0.05, T:0.51
Consensus pattern (22 bp):
TTTTCTCTCCTCTTAGAAAATA
Found at i:2349676 original size:57 final size:56
Alignment explanation
Indices: 2349599--2349751 Score: 141
Period size: 57 Copynumber: 2.7 Consensus size: 56
2349589 GATTGATTTC
* * * * **
2349599 ATCTTGT-AGAAGAAAATAAATTGTTAAATTTATTTTTATAGAGTCTTGTATGATTCT
1 ATCTTGTAAAAAG-AAATAAATTGTTGAATTTATTTTT-GAGAATCAAGTATGATTCT
* * * *
2349656 AT-TT-TATAAAAGAAATTAAATCGTTGGATTTATTCTTGAGAATCAAGTATGATTTT
1 ATCTTGTA-AAAAGAAA-TAAATTGTTGAATTTATTTTTGAGAATCAAGTATGATTCT
*
2349712 ATCTTGTAAAAAGAAATAAATTGTTGACTTTATTTCTTGA
1 ATCTTGTAAAAAGAAATAAATTGTTGAATTTATTT-TTGA
2349752 ACGTCTCAAA
Statistics
Matches: 76, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
55 1 0.01
56 36 0.47
57 37 0.49
58 2 0.03
ACGTcount: A:0.37, C:0.06, G:0.14, T:0.44
Consensus pattern (56 bp):
ATCTTGTAAAAAGAAATAAATTGTTGAATTTATTTTTGAGAATCAAGTATGATTCT
Found at i:2352173 original size:20 final size:20
Alignment explanation
Indices: 2352148--2352194 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
2352138 TTGTAAAATA
*
2352148 AATAATATTTATTTAATTTG
1 AATAATATATATTTAATTTG
*
2352168 AATAATATATATTTAATTTT
1 AATAATATATATTTAATTTG
2352188 AATAATA
1 AATAATA
2352195 AAATGAGTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (20 bp):
AATAATATATATTTAATTTG
Found at i:2352304 original size:83 final size:84
Alignment explanation
Indices: 2352212--2352375 Score: 240
Period size: 84 Copynumber: 2.0 Consensus size: 84
2352202 TGTATATTTG
* * *
2352212 TTTAATATTTTAAATTTAAAAGATATTATTATATGTTT-AAATTTAGATATTAAAAGATATTTGG
1 TTTAATATTTTAAATTTAAAAGATATTATTATATGTTTAAAACTTAGATATTAAAAGAGATTTAG
* *
2352276 TTGAAGTAAATCTCTCAGA
66 ATGAAGTAAAACTCTCAGA
* * *
2352295 TTTAATATTTTAAATTTTAAATATATTATTATATTTTTAAAACTTAGATATTAAAAGAGATTTAG
1 TTTAATATTTTAAATTTAAAAGATATTATTATATGTTTAAAACTTAGATATTAAAAGAGATTTAG
*
2352360 ATGGAGTAAAACTCTC
66 ATGAAGTAAAACTCTC
2352376 TCAAAATTCC
Statistics
Matches: 71, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
83 35 0.49
84 36 0.51
ACGTcount: A:0.41, C:0.04, G:0.10, T:0.45
Consensus pattern (84 bp):
TTTAATATTTTAAATTTAAAAGATATTATTATATGTTTAAAACTTAGATATTAAAAGAGATTTAG
ATGAAGTAAAACTCTCAGA
Found at i:2354004 original size:31 final size:29
Alignment explanation
Indices: 2353951--2354010 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
2353941 ATTTTAAAAT
* *
2353951 TATATTTATGAAAAATTATTATTAATTTA
1 TATATTTATAAAAAAATATTATTAATTTA
*
2353980 TATATTTATAAATAAAATATTTATTTATTTA
1 TATATTTATAAA-AAAATA-TTATTAATTTA
2354011 GAAATATAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 11 0.42
30 5 0.19
31 10 0.38
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (29 bp):
TATATTTATAAAAAAATATTATTAATTTA
Found at i:2356106 original size:3 final size:3
Alignment explanation
Indices: 2356100--2356151 Score: 61
Period size: 3 Copynumber: 17.0 Consensus size: 3
2356090 AATAATTATT
* *
2356100 TAA TAA TAA T-A TAA TATT TAA TAA TATT TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TA-A TAA TAA TA-A TAA TAA TAA TAA TAA TAA
2356146 TAA TAA
1 TAA TAA
2356152 ATAAATAAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
2 2 0.05
3 36 0.86
4 4 0.10
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (3 bp):
TAA
Found at i:2356115 original size:22 final size:21
Alignment explanation
Indices: 2356089--2356151 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 21
2356079 AATGAGCCTG
2356089 TAATAATTATTTAATAATA-A
1 TAATAATTATTTAATAATATA
*
2356109 T-ATAA-TATTTAATAATATT
1 TAATAATTATTTAATAATATA
*
2356128 TAATAA-TA-ATAATAATA-A
1 TAATAATTATTTAATAATATA
2356146 TAATAA
1 TAATAA
2356152 ATAAATAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
18 18 0.47
19 13 0.34
20 7 0.18
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (21 bp):
TAATAATTATTTAATAATATA
Found at i:2356125 original size:10 final size:10
Alignment explanation
Indices: 2356089--2356144 Score: 64
Period size: 10 Copynumber: 5.8 Consensus size: 10
2356079 AATGAGCCTG
2356089 TAATAATTATT
1 TAATAA-TATT
*
2356100 TAATAATA-A
1 TAATAATATT
2356109 T-ATAATATT
1 TAATAATATT
2356118 TAATAATATT
1 TAATAATATT
*
2356128 TAATAATA-A
1 TAATAATATT
2356137 TAATAATA
1 TAATAATA
2356145 ATAATAAATA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
8 6 0.15
9 10 0.25
10 18 0.45
11 6 0.15
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (10 bp):
TAATAATATT
Found at i:2356130 original size:28 final size:30
Alignment explanation
Indices: 2356089--2356144 Score: 98
Period size: 28 Copynumber: 1.9 Consensus size: 30
2356079 AATGAGCCTG
2356089 TAATAATTATTTAATAATAAT-ATAATATT
1 TAATAATTATTTAATAATAATAATAATATT
2356118 TAATAA-TATTTAATAATAATAATAATA
1 TAATAATTATTTAATAATAATAATAATA
2356145 ATAATAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
28 14 0.54
29 12 0.46
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (30 bp):
TAATAATTATTTAATAATAATAATAATATT
Found at i:2356149 original size:28 final size:29
Alignment explanation
Indices: 2356089--2356151 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
2356079 AATGAGCCTG
*
2356089 TAATAATTATTTAATAATAATATAATATT
1 TAATAATTATTTAATAATAATATAATATA
2356118 TAATAA-TATTTAATAATAATAATAATA-A
1 TAATAATTATTTAATAATAAT-ATAATATA
2356146 TAATAA
1 TAATAA
2356152 ATAAATAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
28 20 0.62
29 12 0.38
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (29 bp):
TAATAATTATTTAATAATAATATAATATA
Found at i:2356156 original size:4 final size:4
Alignment explanation
Indices: 2356147--2356172 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
2356137 TAATAATAAT
2356147 AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AA
2356173 ATGGGTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:2356612 original size:80 final size:80
Alignment explanation
Indices: 2356479--2356633 Score: 265
Period size: 80 Copynumber: 1.9 Consensus size: 80
2356469 CTGGAAAAGT
* *
2356479 TGATCCATCGAGTGATGAATTCGAGCAAAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCT
1 TGATCCATCGAATGATGAATTCAAGCAAAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCT
*
2356544 TCTTTCTTCAAATGG
66 TCCTTCTTCAAATGG
* *
2356559 TGATCCATTGAATGATGAATTCAAGCAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCT
1 TGATCCATCGAATGATGAATTCAAGCAAAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCT
2356624 TCCTTCTTCA
66 TCCTTCTTCA
2356634 GATTAGTTCT
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
80 70 1.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (80 bp):
TGATCCATCGAATGATGAATTCAAGCAAAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCT
TCCTTCTTCAAATGG
Found at i:2356656 original size:193 final size:193
Alignment explanation
Indices: 2356390--2356746 Score: 570
Period size: 193 Copynumber: 1.8 Consensus size: 193
2356380 ATAGAGTCAT
* *
2356390 GCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTC
1 GCAAAAAGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* * *
2356455 ATTATGAACTCTCTCTGGAAAAGTTGATCCATCGAGTGATGAATTCGAGCAAAAAGTTGAACAAA
66 ATTATGAACTCTCTCTGGAAAAGCTGATCCATCAAATGATGAATTCGAGCAAAAAGTTGAACAAA
*
2356520 TTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAAATGGTGATCCATTGAATGATGAATTCAA
131 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGGTGATCCATTGAATGATGAATTCAA
* *
2356583 GCAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATTAGTTCTTCTC
1 GCAAAAAGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* * * * *
2356648 ATTATGAACTTTTTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAA
66 ATTATGAACTCTCTCTGGAAAAGCTGATCCATCAAATGATGAATTCGAGCAAAAAGTTGAACAAA
* * *
2356713 TTCTTTTCATTATGAATTTTTTCTTCCTTCTTCA
131 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
2356747 GATGAGTTCT
Statistics
Matches: 148, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
193 148 1.00
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.39
Consensus pattern (193 bp):
GCAAAAAGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
ATTATGAACTCTCTCTGGAAAAGCTGATCCATCAAATGATGAATTCGAGCAAAAAGTTGAACAAA
TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATGGTGATCCATTGAATGATGAATTCAA
Found at i:2356663 original size:113 final size:113
Alignment explanation
Indices: 2356559--2357599 Score: 1893
Period size: 113 Copynumber: 9.2 Consensus size: 113
2356549 CTTCAAATGG
** * ** * * *
2356559 TGATCCATTGAATGATGAATTCAAGCAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCT
1 TGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCT
*
2356624 TCCTTCTTCAGATTAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGC
66 TCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGC
* *
2356672 TGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTTTCATTATGAATTTTTTCT
1 TGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCT
*
2356737 TCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGT
66 TCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGC
* *
2356785 TCATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTAT
1 TGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCT
*
2356850 TCCTTCTTCAGATGAATTCTTCTCATTATGAACTTTTTCTGGAAAAGC
66 TCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGC
*
2356898 TGATCCATTAAATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCT
1 TGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCT
2356963 TCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGC
66 TCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGC
*
2357011 TGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCT
1 TGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCT
2357076 TCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGC
66 TCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGC
2357124 TGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCT
1 TGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCT
2357189 TCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGC
66 TCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGC
2357237 TGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCT
1 TGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCT
2357302 TCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGC
66 TCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGC
2357350 TGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCT
1 TGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCT
2357415 TCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGC
66 TCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGC
*
2357463 TGATCCATCAAATAATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCT
1 TGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCT
*
2357528 TCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGT
66 TCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGC
* *
2357576 TTATCCATCAAGTGATGGATTTGA
1 TGATCCATCAAATGATGGATTTGA
2357600 ATCTTTGCTA
Statistics
Matches: 898, Mismatches: 30, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
113 898 1.00
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (113 bp):
TGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCT
TCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGC
Found at i:2356785 original size:193 final size:193
Alignment explanation
Indices: 2356392--2357009 Score: 573
Period size: 226 Copynumber: 3.0 Consensus size: 193
2356382 AGAGTCATGC
* *
2356392 AAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCAT
1 AAAA-GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * * * * * * *
2356457 TATGAACTCTCTCTGGAAAAGTTGATCCATCGAGTGATGAATTCGAGCAAAAAGTTGAACAAATT
65 TATGAACTTTTTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATT
* * * ** **
2356522 CTTCTCATTATGAACTTCTTCTTCTTTCTTCAAATG-G-TGATC-CATTGAATG-A-TGAATTCA
130 CTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT--ATGAACT-TTTTC-
* *
2356582 AGCA
191 TG-G
*
2356586 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATTAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
2356651 ATGAACTTTTTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATTC
66 ATGAACTTTTTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATTC
* *
2356716 TTTTCATTATGAATTTTTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGG
131 TTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGG
* ** **
2356779 AAAAGTTCATCCATCAAATGATGGAT-TTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAAT
1 AAAAGTTGA---A-C-AA-G-T---TCTT---C-TCA--TT--ATGAA--C-T-TC---------
* *
2356843 TTCTTATTCCTTCTTCAGATGAATTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATTA
35 TTC---TTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCA
2356908 AATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCA
97 AATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCA
2356973 GATGAGTTCTTCTCATTATGAACTTTTTCTGG
162 GATGAGTTCTTCTCATTATGAACTTTTTCTGG
2357005 AAAAG
1 AAAAG
2357010 CTGATCCATC
Statistics
Matches: 353, Mismatches: 32, Indels: 46
0.82 0.07 0.11
Matches are distributed among these distances:
193 153 0.43
194 9 0.03
195 7 0.02
196 6 0.02
197 1 0.00
198 2 0.01
199 1 0.00
200 1 0.00
202 2 0.01
203 1 0.00
205 1 0.00
206 1 0.00
208 2 0.01
210 3 0.01
212 1 0.00
213 1 0.00
214 2 0.01
223 3 0.01
226 156 0.44
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (193 bp):
AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
ATGAACTTTTTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATTC
TTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGG
Found at i:2358449 original size:50 final size:54
Alignment explanation
Indices: 2358384--2358526 Score: 170
Period size: 54 Copynumber: 2.7 Consensus size: 54
2358374 AATCACTGGT
* * *
2358384 TCGTAAAATATTTGACAATACATTCAT-CTTTTCCTGTGGTTTCTG-TC-GA-GA
1 TCGTAAAACATTTGACAACACATTCATCCTTTT-CTGTGGCTTCTGCTCAGATGA
* * *
2358435 T-GTAAAACACTTGACAACACCTTCATCCTTTTCTGTGGCTTCTGCTCAGATGT
1 TCGTAAAACATTTGACAACACATTCATCCTTTTCTGTGGCTTCTGCTCAGATGA
* *
2358488 TCGTAAAGCATTTGACAACACATTCATCCTTTTTTGTGG
1 TCGTAAAACATTTGACAACACATTCATCCTTTTCTGTGG
2358527 ATTATGCCAA
Statistics
Matches: 77, Mismatches: 10, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
50 32 0.42
51 8 0.10
52 2 0.03
53 2 0.03
54 33 0.43
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.38
Consensus pattern (54 bp):
TCGTAAAACATTTGACAACACATTCATCCTTTTCTGTGGCTTCTGCTCAGATGA
Found at i:2360743 original size:115 final size:115
Alignment explanation
Indices: 2360572--2361142 Score: 966
Period size: 115 Copynumber: 5.0 Consensus size: 115
2360562 GATCGTGCAG
* * * * * *
2360572 TTCATCTTTTAATTCCAATGATTGGTTCTGTGGTTTC-TACCGAACCAGATCAGATAACTCAAAG
1 TTCATCTTTCAAATCCAATGATTGGTTTTTTGGGTTCATACCAAACCAGATCAGATAACTCAAAG
* * *
2360636 AACACTTCCAGAAGATGCTATTGGGCCTCCTTATTTCTACCATGAGCAAA
66 AACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGAGCAAA
*
2360686 TTCATCTTTCAAATCTAATGATTGGTTTTTTGGGTTCATACCAAACCAGATCAGATAACTCAAAG
1 TTCATCTTTCAAATCCAATGATTGGTTTTTTGGGTTCATACCAAACCAGATCAGATAACTCAAAG
2360751 AACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGAGCAAA
66 AACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGAGCAAA
2360801 TTCATCTTTCAAATCCAATGATTGGTTTTTTGGGTTCATACCAAACCAGATCAGATAACTCAAAG
1 TTCATCTTTCAAATCCAATGATTGGTTTTTTGGGTTCATACCAAACCAGATCAGATAACTCAAAG
2360866 AACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGA-CAAA
66 AACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGAGCAAA
* *
2360915 TTCATCTTTCAAATCCAATGATTGGTTTTTAGGGTTCATACCAAATCAGATCAGATAACTCAAAG
1 TTCATCTTTCAAATCCAATGATTGGTTTTTTGGGTTCATACCAAACCAGATCAGATAACTCAAAG
* * **
2360980 GACATTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGAGCGCA
66 AACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGAGCAAA
* *
2361030 TTCATCTTTCAAATCCAATGATTGATTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAG
1 TTCATCTTTCAAATCCAATGATTGGTTTTTTGGGTTCATACCAAACCAGATCAGATAACTCAAAG
2361095 AACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGAGCA
66 AACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGAGCA
2361143 CATGGCACTT
Statistics
Matches: 432, Mismatches: 23, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
114 141 0.33
115 291 0.67
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.34
Consensus pattern (115 bp):
TTCATCTTTCAAATCCAATGATTGGTTTTTTGGGTTCATACCAAACCAGATCAGATAACTCAAAG
AACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGAGCAAA
Found at i:2360954 original size:229 final size:230
Alignment explanation
Indices: 2360572--2361142 Score: 966
Period size: 229 Copynumber: 2.5 Consensus size: 230
2360562 GATCGTGCAG
* * * * * *
2360572 TTCATCTTTTAATTCCAATGATTGGTTCTGTGGTTTC-TACCGAACCAGATCAGATAACTCAAAG
1 TTCATCTTTCAAATCCAATGATTGGTTTTTTGGGTTCATACCAAACCAGATCAGATAACTCAAAG
* * *
2360636 AACACTTCCAGAAGATGCTATTGGGCCTCCTTATTTCTACCATGAGCAAATTCATCTTTCAAATC
66 AACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGAGCAAATTCATCTTTCAAATC
* *
2360701 TAATGATTGGTTTTTTGGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGA
131 CAATGATTGGTTTTTAGGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGA
2360766 TGCTATTGGGTCTTCTTATTTCTACTATGAGCAAA
196 TGCTATTGGGTCTTCTTATTTCTACTATGAGCAAA
2360801 TTCATCTTTCAAATCCAATGATTGGTTTTTTGGGTTCATACCAAACCAGATCAGATAACTCAAAG
1 TTCATCTTTCAAATCCAATGATTGGTTTTTTGGGTTCATACCAAACCAGATCAGATAACTCAAAG
2360866 AACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGA-CAAATTCATCTTTCAAATC
66 AACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGAGCAAATTCATCTTTCAAATC
* * *
2360930 CAATGATTGGTTTTTAGGGTTCATACCAAATCAGATCAGATAACTCAAAGGACATTTCCAGAAGA
131 CAATGATTGGTTTTTAGGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGA
**
2360995 TGCTATTGGGTCTTCTTATTTCTACTATGAGCGCA
196 TGCTATTGGGTCTTCTTATTTCTACTATGAGCAAA
* *
2361030 TTCATCTTTCAAATCCAATGATTGATTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAG
1 TTCATCTTTCAAATCCAATGATTGGTTTTTTGGGTTCATACCAAACCAGATCAGATAACTCAAAG
2361095 AACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGAGCA
66 AACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGAGCA
2361143 CATGGCACTT
Statistics
Matches: 322, Mismatches: 18, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
229 252 0.78
230 70 0.22
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.34
Consensus pattern (230 bp):
TTCATCTTTCAAATCCAATGATTGGTTTTTTGGGTTCATACCAAACCAGATCAGATAACTCAAAG
AACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGAGCAAATTCATCTTTCAAATC
CAATGATTGGTTTTTAGGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGA
TGCTATTGGGTCTTCTTATTTCTACTATGAGCAAA
Found at i:2365306 original size:7 final size:7
Alignment explanation
Indices: 2365272--2365313 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
2365262 ATAAGCGTAT
2365272 AAATGCA
1 AAATGCA
* *
2365279 CAATGAA
1 AAATGCA
2365286 AAATGCA
1 AAATGCA
2365293 AAGATGCA
1 AA-ATGCA
2365301 AAATGC-
1 AAATGCA
2365307 AAATGCA
1 AAATGCA
2365314 TGTATGAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
6 6 0.21
7 16 0.55
8 7 0.24
ACGTcount: A:0.55, C:0.14, G:0.17, T:0.14
Consensus pattern (7 bp):
AAATGCA
Found at i:2369500 original size:3 final size:3
Alignment explanation
Indices: 2369494--2369551 Score: 64
Period size: 3 Copynumber: 19.0 Consensus size: 3
2369484 AATAATTATT
* **
2369494 TAA TAA TAA T-A TAA TATA TAA TAA TATT TAA TAA TAA TAA TAA TTT
1 TAA TAA TAA TAA TAA TA-A TAA TAA TA-A TAA TAA TAA TAA TAA TAA
2369540 TAA TAA TAA TAA
1 TAA TAA TAA TAA
2369552 ATAAATAAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
2 2 0.04
3 39 0.85
4 5 0.11
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (3 bp):
TAA
Found at i:2369516 original size:15 final size:15
Alignment explanation
Indices: 2369496--2369563 Score: 58
Period size: 15 Copynumber: 4.8 Consensus size: 15
2369486 TAATTATTTA
2369496 ATAATAATATAATAT
1 ATAATAATATAATAT
*
2369511 ATAATAATAT-TTA-
1 ATAATAATATAATAT
2369524 ATAATAATAATAAT-T
1 ATAATAAT-ATAATAT
*
2369539 TTAATAATAATAA-AT
1 ATAATAAT-ATAATAT
2369554 A-AATAA-ATAA
1 ATAATAATATAA
2369564 ATAAAATGGG
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
12 4 0.09
13 8 0.18
14 9 0.20
15 24 0.53
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
ATAATAATATAATAT
Found at i:2369550 original size:31 final size:28
Alignment explanation
Indices: 2369483--2369547 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 28
2369473 AATGGGCCTG
2369483 TAATAATTATTTAATAATAATATAATATA
1 TAATAA-TATTTAATAATAATATAATATA
*
2369512 TAATAATATTTAATAATAATAATAAT-TT
1 TAATAATATTTAATAATAAT-ATAATATA
2369540 TAATAATA
1 TAATAATA
2369548 ATAAATAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
28 23 0.68
29 11 0.32
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (28 bp):
TAATAATATTTAATAATAATATAATATA
Found at i:2369554 original size:28 final size:28
Alignment explanation
Indices: 2369495--2369563 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 28
2369485 ATAATTATTT
* *
2369495 AATAATAATATAATATATAATAATATTT
1 AATAATAATATAATATATAATAATAATA
*
2369523 AATAATAATAATAAT-TTTAATAATAATA
1 AATAATAAT-ATAATATATAATAATAATA
2369551 AATAAATAA-ATAA
1 AAT-AATAATATAA
2369564 ATAAAATGGG
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
27 4 0.11
28 22 0.61
29 10 0.28
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (28 bp):
AATAATAATATAATATATAATAATAATA
Found at i:2371262 original size:24 final size:23
Alignment explanation
Indices: 2371234--2371305 Score: 76
Period size: 24 Copynumber: 3.1 Consensus size: 23
2371224 TCAAAACATT
2371234 ATTATATATATATATATAATATTA
1 ATTATATA-ATATATATAATATTA
* *
2371258 ATTAT-TAAATTATATTTATTATTA
1 ATTATAT-AA-TATATATAATATTA
*
2371282 TTTA-ATAATATATATAATATTA
1 ATTATATAATATATATAATATTA
2371304 AT
1 AT
2371306 AAATTATAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
22 13 0.33
23 4 0.10
24 22 0.56
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (23 bp):
ATTATATAATATATATAATATTA
Found at i:2371271 original size:20 final size:21
Alignment explanation
Indices: 2371246--2371313 Score: 66
Period size: 20 Copynumber: 3.2 Consensus size: 21
2371236 TATATATATA
2371246 TATATAATATTAATTATTAAAT
1 TATAT-ATATTAATTATTAAAT
* *
2371268 TATATTTATT-ATTATTTAAT
1 TATATATATTAATTATTAAAT
* * *
2371288 AATATATATAATATTAATAAAT
1 TATATATATTA-ATTATTAAAT
2371310 TATA
1 TATA
2371314 ATAAAATTAA
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
20 16 0.44
21 4 0.11
22 16 0.44
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
TATATATATTAATTATTAAAT
Found at i:2371306 original size:18 final size:16
Alignment explanation
Indices: 2371283--2371316 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 16
2371273 TTATTATTAT
2371283 TTAATAATATATATAATA
1 TTAATAA-AT-TATAATA
2371301 TTAATAAATTATAATA
1 TTAATAAATTATAATA
2371317 AAATTAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 2 0.12
18 7 0.44
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
TTAATAAATTATAATA
Found at i:2371364 original size:26 final size:25
Alignment explanation
Indices: 2371295--2371356 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 25
2371285 AATAATATAT
* *
2371295 ATAATATTAATA-AATTATAATAAAA
1 ATAATATTATTACAATT-TCATAAAA
*
2371320 TTAATATTATTACCAATTTCATAAAA
1 ATAATATTATTA-CAATTTCATAAAA
2371346 ATAATATTATT
1 ATAATATTATT
2371357 GAATATTTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
25 10 0.32
26 17 0.55
27 4 0.13
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (25 bp):
ATAATATTATTACAATTTCATAAAA
Found at i:2371475 original size:43 final size:44
Alignment explanation
Indices: 2371428--2371510 Score: 125
Period size: 43 Copynumber: 1.9 Consensus size: 44
2371418 TATATGACTC
* *
2371428 TTTAATGAGTAATTAATATAAT-TAATAAT-ATATTATCTTTTAT
1 TTTAATAAATAATTAATATAATAT-ATAATAATATTATCTTTTAT
2371471 TTTAATAAATAATTAATATAATATATAATAATATTATCTT
1 TTTAATAAATAATTAATATAATATATAATAATATTATCTT
2371511 AAAATATTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
43 25 0.69
44 11 0.31
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (44 bp):
TTTAATAAATAATTAATATAATATATAATAATATTATCTTTTAT
Found at i:2372922 original size:99 final size:101
Alignment explanation
Indices: 2372748--2373011 Score: 325
Period size: 99 Copynumber: 2.6 Consensus size: 101
2372738 CTCTACCTGC
* * * * * *
2372748 AAAATCTGATATCATATCGGGATCAATCTCCATACAAATGCAGCTCAGAATATAAAATCAATCAA
1 AAAATATGAGATCATATTGGGATGAATCTCCATAAAAATGCAGCTCAGAACATAAAATCAATCAA
*
2372813 AATTTCAACAAATTC-C-AAAAACAACACCAACATT
66 AATTTAAACAAATTCACGAAAAACAACACCAACATT
* *
2372847 AAAATATGAGATCATATTGGGATGAATCTCCATAAAAATGCAGTTCAGAACATAAAATCAATTAA
1 AAAATATGAGATCATATTGGGATGAATCTCCATAAAAATGCAGCTCAGAACATAAAATCAATCAA
* ** *
2372912 AATTTAAACAAATTCTAAAATCGAAAAACAATATTAGCATT
66 AATTTAAACAAATTC----A-CGAAAAACAACACCAACATT
** *
2372953 AAAATATGAGATCATATTGGGGCGAATCTCCATAAAAATGCAGCTCAAAACATAAAATC
1 AAAATATGAGATCATATTGGGATGAATCTCCATAAAAATGCAGCTCAGAACATAAAATC
2373012 TTCTTAGATT
Statistics
Matches: 141, Mismatches: 17, Indels: 7
0.85 0.10 0.04
Matches are distributed among these distances:
99 71 0.50
105 1 0.01
106 69 0.49
ACGTcount: A:0.48, C:0.17, G:0.10, T:0.25
Consensus pattern (101 bp):
AAAATATGAGATCATATTGGGATGAATCTCCATAAAAATGCAGCTCAGAACATAAAATCAATCAA
AATTTAAACAAATTCACGAAAAACAACACCAACATT
Found at i:2389576 original size:19 final size:19
Alignment explanation
Indices: 2389533--2389608 Score: 71
Period size: 19 Copynumber: 3.8 Consensus size: 19
2389523 AAATGCAAAA
*
2389533 ATGGTATCGATACCATAGG
1 ATGGTATCGATACCATAGT
*
2389552 AAGGTATCGATACCATAGT
1 ATGGTATCGATACCATAGT
*
2389571 ATGGTAGTATCGATACCATGGT
1 AT-G--GTATCGATACCATAGT
* *
2389593 AAGGGTATCAATACCA
1 -ATGGTATCGATACCA
2389609 GGTAACATCG
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
19 18 0.38
20 12 0.26
22 16 0.34
23 1 0.02
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (19 bp):
ATGGTATCGATACCATAGT
Found at i:2389661 original size:95 final size:95
Alignment explanation
Indices: 2389529--2389701 Score: 253
Period size: 95 Copynumber: 1.8 Consensus size: 95
2389519 AACAAAATGC
* *
2389529 AAAAATGGTATCGATACCATAGGAAGGTATCGATACCATAGTATGGTAGTATCGATACCATGGTA
1 AAAAATGGTATCGATACCATAGGAAGGTATCGATACCATAGTATAGTAGTATCGATACCAAGGTA
2389594 AGGGTATCAATACCAGGTAACATCGAATCT
66 AGGGTATCAATACCAGGTAACATCGAATCT
* *
2389624 AAAATTGGTATCGATACCGGA-AGG-GGGTATC-AGTACCATAGTATAGTAGTATCGATACCAAG
1 AAAAATGGTATCGATACC--ATAGGAAGGTATCGA-TACCATAGTATAGTAGTATCGATACCAAG
*
2389686 GTAAGGGTATCGATAC
63 GTAAGGGTATCAATAC
2389702 TATGAAGCCA
Statistics
Matches: 70, Mismatches: 5, Indels: 6
0.86 0.06 0.07
Matches are distributed among these distances:
94 1 0.01
95 65 0.93
96 3 0.04
97 1 0.01
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.25
Consensus pattern (95 bp):
AAAAATGGTATCGATACCATAGGAAGGTATCGATACCATAGTATAGTAGTATCGATACCAAGGTA
AGGGTATCAATACCAGGTAACATCGAATCT
Found at i:2390411 original size:217 final size:217
Alignment explanation
Indices: 2390027--2390422 Score: 623
Period size: 217 Copynumber: 1.8 Consensus size: 217
2390017 CCAAATAGGC
* * * *
2390027 ACTAAGTGTGCATTCCACGGAATTCATCCTATGTGGATGAATAATCGTTTCGGCACTAAGTGTGC
1 ACTAAGTGTGCATTCCACAGAATTCATCCTACGTGGATGAATAACCATTTCGGCACTAAGTGTGC
* * *
2390092 ATTTCGCGAAATTCATCCTATGTGGATGAATAACCGTTTCGACACTAAGTGTGCATTTCACGAAA
66 ATTTCACAAAATTCATCCTACGTGGATGAATAACCGTTTCGACACTAAGTGTGCATTTCACGAAA
* * * * * *
2390157 TTCATCATATGTGGATGAATAGCTGTTTCGGCACTAAGTGTGTATTTCACGGAATTTATCTTATG
131 TTAATCATATATGGATGAATAACCGTTTCGACACTAAGTGTGCATTTCACGGAATTTATCTTATG
2390222 TGGATGAATAAAATTTTTCGAA
196 TGGATGAATAAAATTTTTCGAA
* *
2390244 ACTAAGTGTGCATTTCACAGAATTCATCCTACGTGGATGAATAACCATTTCGGCAGTAAGTGTGC
1 ACTAAGTGTGCATTCCACAGAATTCATCCTACGTGGATGAATAACCATTTCGGCACTAAGTGTGC
*
2390309 ATTTCACAAAATTCATCCTACGTGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCAC-AGA
66 ATTTCACAAAATTCATCCTACGTGGATGAATAACCGTTTCGACACTAAGTGTGCATTTCACGA-A
*
2390373 ATTAATCCTATATGGATGAATAACCGTTTCGACACTAAGTGTGCATTTCA
130 ATTAATCATATATGGATGAATAACCGTTTCGACACTAAGTGTGCATTTCA
2390423 TGAGATTCAT
Statistics
Matches: 161, Mismatches: 17, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
216 1 0.01
217 160 0.99
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.33
Consensus pattern (217 bp):
ACTAAGTGTGCATTCCACAGAATTCATCCTACGTGGATGAATAACCATTTCGGCACTAAGTGTGC
ATTTCACAAAATTCATCCTACGTGGATGAATAACCGTTTCGACACTAAGTGTGCATTTCACGAAA
TTAATCATATATGGATGAATAACCGTTTCGACACTAAGTGTGCATTTCACGGAATTTATCTTATG
TGGATGAATAAAATTTTTCGAA
Found at i:2390453 original size:54 final size:55
Alignment explanation
Indices: 2390024--2390432 Score: 537
Period size: 54 Copynumber: 7.6 Consensus size: 55
2390014 TTACCAAATA
* *
2390024 GGCACTAAGTGTGCATTCCACG-GAATTCATCCTATGTGGATGAATAATCGTTTC
1 GGCACTAAGTGTGCATTTCACGAGAATTCATCCTATGTGGATGAATAACCGTTTC
*
2390078 GGCACTAAGTGTGCATTTCGCGA-AATTCATCCTATGTGGATGAATAACCGTTTC
1 GGCACTAAGTGTGCATTTCACGAGAATTCATCCTATGTGGATGAATAACCGTTTC
* * * *
2390132 GACACTAAGTGTGCATTTCACGA-AATTCATCATATGTGGATGAATAGCTGTTTC
1 GGCACTAAGTGTGCATTTCACGAGAATTCATCCTATGTGGATGAATAACCGTTTC
* * * ***
2390186 GGCACTAAGTGTGTATTTCACG-GAATTTATCTTATGTGGATGAATAAAATTTTTC
1 GGCACTAAGTGTGCATTTCACGAGAATTCATCCTATGTGGATGAAT-AACCGTTTC
** * *
2390241 GAAACTAAGTGTGCATTTCAC-AGAATTCATCCTACGTGGATGAATAACCATTTC
1 GGCACTAAGTGTGCATTTCACGAGAATTCATCCTATGTGGATGAATAACCGTTTC
* * *
2390295 GGCAGTAAGTGTGCATTTCAC-AAAATTCATCCTACGTGGATGAATAACCGTTTC
1 GGCACTAAGTGTGCATTTCACGAGAATTCATCCTATGTGGATGAATAACCGTTTC
* *
2390349 GGCACTAAGTGTGCATTTCAC-AGAATTAATCCTATATGGATGAATAACCGTTTC
1 GGCACTAAGTGTGCATTTCACGAGAATTCATCCTATGTGGATGAATAACCGTTTC
* *
2390403 GACACTAAGTGTGCATTTCATGAG-ATTCAT
1 GGCACTAAGTGTGCATTTCACGAGAATTCAT
2390433 AATATGTTTA
Statistics
Matches: 313, Mismatches: 37, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
54 267 0.85
55 46 0.15
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (55 bp):
GGCACTAAGTGTGCATTTCACGAGAATTCATCCTATGTGGATGAATAACCGTTTC
Found at i:2393359 original size:24 final size:24
Alignment explanation
Indices: 2393322--2393374 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
2393312 CCGTTCTATC
2393322 TATTTTCAGAGGATAT-TTAGCTTA
1 TATTTTCAGAGGATATGTTA-CTTA
** *
2393346 TATTTTCATCGGATATGTTATTTA
1 TATTTTCAGAGGATATGTTACTTA
2393370 TATTT
1 TATTT
2393375 AATCGATACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 22 0.88
25 3 0.12
ACGTcount: A:0.26, C:0.08, G:0.13, T:0.53
Consensus pattern (24 bp):
TATTTTCAGAGGATATGTTACTTA
Found at i:2393565 original size:20 final size:19
Alignment explanation
Indices: 2393519--2393565 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
2393509 TCCGGTATCA
*
2393519 TTTTACCGTTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
2393538 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
2393559 TTTTACC
1 TTTTACC
2393566 TGTTATATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.19, C:0.17, G:0.09, T:0.55
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:2400597 original size:43 final size:43
Alignment explanation
Indices: 2400536--2400623 Score: 131
Period size: 43 Copynumber: 2.0 Consensus size: 43
2400526 ACTAAATAAA
* * *
2400536 TGAGATAATGTAATAATCATGTATGTATGTATATATGTATGTG
1 TGAGATAAGGTAATAATCATATATGTATATATATATGTATGTG
* *
2400579 TGAGATCAGGTAATAATCATATATGTATATATGTATGTATGTG
1 TGAGATAAGGTAATAATCATATATGTATATATATATGTATGTG
2400622 TG
1 TG
2400624 TGTGAAAGTA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.34, C:0.03, G:0.22, T:0.41
Consensus pattern (43 bp):
TGAGATAAGGTAATAATCATATATGTATATATATATGTATGTG
Found at i:2404782 original size:18 final size:18
Alignment explanation
Indices: 2404759--2404793 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
2404749 TTTCCTTCCG
*
2404759 TCCAAACTTATTATTTAA
1 TCCAAACTTATCATTTAA
2404777 TCCAAACTTATCATTTA
1 TCCAAACTTATCATTTA
2404794 CTTCAGTCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.20, G:0.00, T:0.43
Consensus pattern (18 bp):
TCCAAACTTATCATTTAA
Found at i:2416870 original size:21 final size:21
Alignment explanation
Indices: 2416841--2416881 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
2416831 AATCATTGGG
* *
2416841 AACATATATGTGGTTCTTTGA
1 AACACATATGTGGTCCTTTGA
*
2416862 AACACATATTTGGTCCTTTG
1 AACACATATGTGGTCCTTTG
2416882 GAAAGGAGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.27, C:0.15, G:0.17, T:0.41
Consensus pattern (21 bp):
AACACATATGTGGTCCTTTGA
Found at i:2423129 original size:21 final size:21
Alignment explanation
Indices: 2423105--2423170 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
2423095 TCTTCATGAG
2423105 GTATCGATACCGTAAGGGGTA
1 GTATCGATACCGTAAGGGGTA
*
2423126 GTATCGATA-C-T-ATGGGTA
1 GTATCGATACCGTAAGGGGTA
*
2423144 --AT-GATACCGCAAGGGGTA
1 GTATCGATACCGTAAGGGGTA
2423162 GTATCGATA
1 GTATCGATA
2423171 ATATGGGTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 12
0.71 0.06 0.24
Matches are distributed among these distances:
15 4 0.11
16 3 0.08
18 12 0.33
19 1 0.03
20 3 0.08
21 13 0.36
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.26
Consensus pattern (21 bp):
GTATCGATACCGTAAGGGGTA
Found at i:2423158 original size:36 final size:36
Alignment explanation
Indices: 2423104--2423193 Score: 135
Period size: 36 Copynumber: 2.5 Consensus size: 36
2423094 ATCTTCATGA
* * *
2423104 GGTATCGATACCGTAAGGGGTAGTATCGATACTATG
1 GGTAACGATACCGCAAGGGGTAGTATCGATAATATG
*
2423140 GGTAATGATACCGCAAGGGGTAGTATCGATAATATG
1 GGTAACGATACCGCAAGGGGTAGTATCGATAATATG
*
2423176 GGTAACGATACCACAAGG
1 GGTAACGATACCGCAAGG
2423194 AAGGTATCGA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 48 1.00
ACGTcount: A:0.32, C:0.14, G:0.30, T:0.23
Consensus pattern (36 bp):
GGTAACGATACCGCAAGGGGTAGTATCGATAATATG
Found at i:2425296 original size:17 final size:17
Alignment explanation
Indices: 2425274--2425308 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
2425264 TAGAGCGATC
2425274 CCGACATTATCTAGATA
1 CCGACATTATCTAGATA
*
2425291 CCGACATTATCTCGATA
1 CCGACATTATCTAGATA
2425308 C
1 C
2425309 TGAACTCGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.29, G:0.11, T:0.29
Consensus pattern (17 bp):
CCGACATTATCTAGATA
Found at i:2431366 original size:2 final size:2
Alignment explanation
Indices: 2431359--2431389 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
2431349 TGCATACTGC
2431359 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2431390 TGTTTATGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2431723 original size:23 final size:23
Alignment explanation
Indices: 2431697--2431766 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
2431687 TATAGGATAA
*
2431697 TTCTACATGGTCCTTCGGGACTT
1 TTCTACATGGTCCTTCGGGACAT
* *
2431720 TTCTACGTAGTCCTTCGGGACAT
1 TTCTACATGGTCCTTCGGGACAT
* * *
2431743 ATCTATATGGTCCTTCGAGACAT
1 TTCTACATGGTCCTTCGGGACAT
2431766 T
1 T
2431767 ATTACGTGGC
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.37
Consensus pattern (23 bp):
TTCTACATGGTCCTTCGGGACAT
Found at i:2431796 original size:24 final size:23
Alignment explanation
Indices: 2431769--2431817 Score: 80
Period size: 24 Copynumber: 2.1 Consensus size: 23
2431759 GAGACATTAT
*
2431769 TACGTGGCACTTTGGTGCATATTC
1 TACGTGGCACTTCGGTGCA-ATTC
2431793 TACGTGGCACTTCGGTGCAATTC
1 TACGTGGCACTTCGGTGCAATTC
2431816 TA
1 TA
2431818 TGTTGCAGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 6 0.25
24 18 0.75
ACGTcount: A:0.18, C:0.22, G:0.24, T:0.35
Consensus pattern (23 bp):
TACGTGGCACTTCGGTGCAATTC
Found at i:2445441 original size:30 final size:30
Alignment explanation
Indices: 2445390--2445465 Score: 113
Period size: 30 Copynumber: 2.6 Consensus size: 30
2445380 GTGATAAAAT
2445390 TAAAATAGATTAATC-AAATAAATAT-GAA
1 TAAAATAGATTAATCAAAATAAATATGGAA
2445418 -AAAATGAGATTGAATCAAAATAAATATGGAA
1 TAAAAT-AGATT-AATCAAAATAAATATGGAA
2445449 TAAAATAGATTAATCAA
1 TAAAATAGATTAATCAA
2445466 TAAATGAAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
27 5 0.12
28 5 0.12
29 4 0.09
30 16 0.37
31 8 0.19
32 5 0.12
ACGTcount: A:0.59, C:0.04, G:0.11, T:0.26
Consensus pattern (30 bp):
TAAAATAGATTAATCAAAATAAATATGGAA
Found at i:2457060 original size:73 final size:74
Alignment explanation
Indices: 2456901--2457110 Score: 336
Period size: 73 Copynumber: 2.9 Consensus size: 74
2456891 TACTCGACTA
* *
2456901 ATATAATGTTTTCAAATGAAATTTTAAAAAAGCAAA-TTTGATTTTCAAAGGTTTCTTGATGATT
1 ATATAATGTTTTCAAATGAATTTTTAAAGAAGCAAAGTTTGATTTTCAAAGGTTTCTTGATGATT
2456965 ACCTGACCG
66 ACCTGACCG
*
2456974 ATATAATGTTTTCAAGTGAATTTTTAAAGAAGCAAAGTTTGATTTTCAAAGGTTTCTT-ATTGAT
1 ATATAATGTTTTCAAATGAATTTTTAAAGAAGCAAAGTTTGATTTTCAAAGGTTTCTTGA-TGAT
*
2457038 TATCTGACCG
65 TACCTGACCG
* *
2457048 ATATGATG-TTTCAAATGAATTTTTAAAGAAGCCAAGTTTGATTTTCAAAGGTTTCTTGATGAT
1 ATATAATGTTTTCAAATGAATTTTTAAAGAAGCAAAGTTTGATTTTCAAAGGTTTCTTGATGAT
2457111 AAGTCTTTCA
Statistics
Matches: 127, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
73 85 0.67
74 42 0.33
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.40
Consensus pattern (74 bp):
ATATAATGTTTTCAAATGAATTTTTAAAGAAGCAAAGTTTGATTTTCAAAGGTTTCTTGATGATT
ACCTGACCG
Found at i:2458187 original size:14 final size:14
Alignment explanation
Indices: 2458168--2458200 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
2458158 CAAAGCCTAC
2458168 ATAACAAT-ACCCAA
1 ATAACAATGACCC-A
2458182 ATAACAATGACCCA
1 ATAACAATGACCCA
2458196 ATAAC
1 ATAAC
2458201 CTGTAACCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.55, C:0.27, G:0.03, T:0.15
Consensus pattern (14 bp):
ATAACAATGACCCA
Found at i:2463416 original size:13 final size:13
Alignment explanation
Indices: 2463393--2463418 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2463383 GACTTTAACT
2463393 TTTGACTGTTGAC
1 TTTGACTGTTGAC
2463406 TTTGACTGTTGAC
1 TTTGACTGTTGAC
2463419 CGTTGGCTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.23, T:0.46
Consensus pattern (13 bp):
TTTGACTGTTGAC
Found at i:2463429 original size:20 final size:20
Alignment explanation
Indices: 2463381--2463431 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
2463371 GTCTGACCCA
* * *
2463381 TTGACTTTAACTTTTGACTG
1 TTGACTTTGACTGTTGACCG
2463401 TTGACTTTGACTGTTGACCG
1 TTGACTTTGACTGTTGACCG
*
2463421 TTGGCTTTGAC
1 TTGACTTTGAC
2463432 CAAAAAAGTC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.16, C:0.18, G:0.22, T:0.45
Consensus pattern (20 bp):
TTGACTTTGACTGTTGACCG
Found at i:2465494 original size:16 final size:16
Alignment explanation
Indices: 2465473--2465507 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
2465463 CACCAGAGTC
2465473 CATAATGATGATAACA
1 CATAATGATGATAACA
2465489 CATAATGATGATAACA
1 CATAATGATGATAACA
2465505 CAT
1 CAT
2465508 TATTATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.49, C:0.14, G:0.11, T:0.26
Consensus pattern (16 bp):
CATAATGATGATAACA
Found at i:2467852 original size:14 final size:15
Alignment explanation
Indices: 2467821--2467858 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
2467811 GATAATAAAT
*
2467821 AAAAATGAAGAGAGAA
1 AAAAAT-AAAAGAGAA
2467837 AAAAATAAAAGA-AA
1 AAAAATAAAAGAGAA
2467851 AAAAATAA
1 AAAAATAA
2467859 GTTAGTACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 10 0.48
15 5 0.24
16 6 0.29
ACGTcount: A:0.79, C:0.00, G:0.13, T:0.08
Consensus pattern (15 bp):
AAAAATAAAAGAGAA
Found at i:2469860 original size:27 final size:25
Alignment explanation
Indices: 2469810--2469866 Score: 78
Period size: 27 Copynumber: 2.2 Consensus size: 25
2469800 GCTTCCCTTA
*
2469810 TTTCTCTGTCTCTCTTTTTCTCTCT
1 TTTCTCTCTCTCTCTTTTTCTCTCT
*
2469835 TTTCTCTCCTCTCTCTTTTATTTCTCT
1 TTTCTCT-CTCTCTCTTTT-TCTCTCT
2469862 TTTCT
1 TTTCT
2469867 TTTTTTGTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 7 0.25
26 10 0.36
27 11 0.39
ACGTcount: A:0.02, C:0.32, G:0.02, T:0.65
Consensus pattern (25 bp):
TTTCTCTCTCTCTCTTTTTCTCTCT
Found at i:2470544 original size:22 final size:22
Alignment explanation
Indices: 2470485--2470546 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 22
2470475 TTAATATGTA
2470485 TATTATTTTTAAATATTTTAATTT
1 TATT-TTTTT-AATATTTTAATTT
2470509 TAATTTTTTT-ATA-TTT-ATATT
1 T-ATTTTTTTAATATTTTAAT-TT
2470530 TATTTTTTTGAATATTT
1 TATTTTTTT-AATATTT
2470547 GAATATTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 11
0.75 0.00 0.25
Matches are distributed among these distances:
20 10 0.30
21 6 0.18
22 6 0.18
23 2 0.06
24 6 0.18
25 3 0.09
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (22 bp):
TATTTTTTTAATATTTTAATTT
Found at i:2470569 original size:44 final size:44
Alignment explanation
Indices: 2470485--2470569 Score: 102
Period size: 44 Copynumber: 1.9 Consensus size: 44
2470475 TTAATATGTA
* *
2470485 TATTATTTTTAAATATTTTAATTTTAATTTTTTTATATTTATATT
1 TATTATTTTTAAATATTTGAATTTT-ATTTATTTATATTTATATT
*
2470530 TATT-TTTTTGAATATTTGAATATTT-TTTATTTATAATTTA
1 TATTATTTTTAAATATTTGAAT-TTTATTTATTTAT-ATTTA
2470570 AAATAATTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
43 8 0.23
44 20 0.57
45 7 0.20
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (44 bp):
TATTATTTTTAAATATTTGAATTTTATTTATTTATATTTATATT
Found at i:2477581 original size:3 final size:3
Alignment explanation
Indices: 2477575--2477661 Score: 95
Period size: 3 Copynumber: 29.0 Consensus size: 3
2477565 ATTTATTATT
* * *
2477575 TAA TAA TAA TAAA TAA TAA TAA TAA TAT TAA TAA TAA TAT TGA TAA
1 TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
2477621 TAG TAA TAA TAA -AA TAA TAA TAT TAA TAT TAA TAA AAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
2477662 AAACGGGACA
Statistics
Matches: 68, Mismatches: 14, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
2 2 0.03
3 63 0.93
4 3 0.04
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:2480410 original size:15 final size:15
Alignment explanation
Indices: 2480390--2480421 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
2480380 CCTTCATGGT
*
2480390 GGTGGAAGTGGTGGA
1 GGTGGAAGTGGCGGA
2480405 GGTGGAAGTGGCGGA
1 GGTGGAAGTGGCGGA
2480420 GG
1 GG
2480422 AAGCAAAGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.03, G:0.62, T:0.16
Consensus pattern (15 bp):
GGTGGAAGTGGCGGA
Found at i:2482383 original size:14 final size:14
Alignment explanation
Indices: 2482364--2482393 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
2482354 TTCCAAAGTT
*
2482364 ATATAAAATCTAAC
1 ATATAAAATCAAAC
2482378 ATATAAAATCAAAC
1 ATATAAAATCAAAC
2482392 AT
1 AT
2482394 CCTCGTACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.60, C:0.13, G:0.00, T:0.27
Consensus pattern (14 bp):
ATATAAAATCAAAC
Found at i:2484090 original size:23 final size:23
Alignment explanation
Indices: 2484060--2484111 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
2484050 TTTAATCGGG
*
2484060 GCCCAATTATAATTAAAACCAAA
1 GCCCAATTACAATTAAAACCAAA
*
2484083 GCCCAATTACAATTAAAACCGAA
1 GCCCAATTACAATTAAAACCAAA
2484106 GCCCAA
1 GCCCAA
2484112 GCTTTGGCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.48, C:0.27, G:0.08, T:0.17
Consensus pattern (23 bp):
GCCCAATTACAATTAAAACCAAA
Found at i:2485659 original size:21 final size:21
Alignment explanation
Indices: 2485604--2485653 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
2485594 CGATGAAAAA
*
2485604 TATCGATACTGATGTAATTAG
1 TATCGATACTGATGCAATTAG
2485625 TATCGATACTGATGCAATTAG
1 TATCGATACTGATGCAATTAG
2485646 TATCGATA
1 TATCGATA
2485654 TCGATGTGGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (21 bp):
TATCGATACTGATGCAATTAG
Found at i:2486309 original size:49 final size:49
Alignment explanation
Indices: 2486255--2486358 Score: 190
Period size: 49 Copynumber: 2.1 Consensus size: 49
2486245 TGCATTGAGA
*
2486255 ATAAAAGGTACCATAAATGAAAGTTAAATGCATAACGGTGCATTTCGAC
1 ATAAAAGGTACCACAAATGAAAGTTAAATGCATAACGGTGCATTTCGAC
*
2486304 ATAAAAGGTGCCACAAATGAAAGTTAAATGCATAACGGTGCATTTCGAC
1 ATAAAAGGTACCACAAATGAAAGTTAAATGCATAACGGTGCATTTCGAC
2486353 ATAAAA
1 ATAAAA
2486359 TATGCCACTC
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 53 1.00
ACGTcount: A:0.44, C:0.14, G:0.18, T:0.23
Consensus pattern (49 bp):
ATAAAAGGTACCACAAATGAAAGTTAAATGCATAACGGTGCATTTCGAC
Found at i:2497493 original size:20 final size:19
Alignment explanation
Indices: 2497465--2497534 Score: 79
Period size: 20 Copynumber: 3.6 Consensus size: 19
2497455 GTATCGATAC
* *
2497465 TACTGTTCACACAGTATAAA
1 TACTATTCATACAGTAT-AA
*
2497485 TACTATTCATACAGTATCAG
1 TACTATTCATACAGTAT-AA
2497505 TACTATTCATACAGTACT-A
1 TACTATTCATACAGTA-TAA
2497524 TACTATTCATA
1 TACTATTCATA
2497535 AAAAAATTTG
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
19 11 0.25
20 32 0.73
21 1 0.02
ACGTcount: A:0.37, C:0.20, G:0.07, T:0.36
Consensus pattern (19 bp):
TACTATTCATACAGTATAA
Found at i:2504413 original size:38 final size:38
Alignment explanation
Indices: 2504352--2504487 Score: 119
Period size: 38 Copynumber: 3.8 Consensus size: 38
2504342 CTTCAATCCT
* *
2504352 TGACTTCCTTGTGTAGAGAAGTCAATCTTTGTTATTCC
1 TGACTCCCTTGTGAAGAGAAGTCAATCTTTGTTATTCC
* * *
2504390 TGACTCCCTTGCGAAGAGGAGTCAATCCTTG--A---C
1 TGACTCCCTTGTGAAGAGAAGTCAATCTTTGTTATTCC
** * *
2504423 T---T-CCTCATGAAGAGAAGTCAATCTTTTTTATTCG
1 TGACTCCCTTGTGAAGAGAAGTCAATCTTTGTTATTCC
*
2504457 TGACTCCCTTGTGAAGAGGAGTCAATCTTTG
1 TGACTCCCTTGTGAAGAGAAGTCAATCTTTG
2504488 ACTTCCTCAT
Statistics
Matches: 73, Mismatches: 16, Indels: 18
0.68 0.15 0.17
Matches are distributed among these distances:
29 19 0.26
30 1 0.01
31 1 0.01
33 2 0.03
34 1 0.01
36 1 0.01
37 1 0.01
38 47 0.64
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.35
Consensus pattern (38 bp):
TGACTCCCTTGTGAAGAGAAGTCAATCTTTGTTATTCC
Found at i:2504420 original size:67 final size:67
Alignment explanation
Indices: 2504344--2504516 Score: 283
Period size: 67 Copynumber: 2.6 Consensus size: 67
2504334 ACTTGAAACT
** *
2504344 TCAATCCTTGACTTCCTTGTGTAGAGAAGTCAATCTTTGTTATTCCTGACTCCCTTGCGAAGAGG
1 TCAATCCTTGACTTCCTCATGAAGAGAAGTCAATCTTTGTTATTCCTGACTCCCTTGCGAAGAGG
2504409 AG
66 AG
* * *
2504411 TCAATCCTTGACTTCCTCATGAAGAGAAGTCAATCTTTTTTATTCGTGACTCCCTTGTGAAGAGG
1 TCAATCCTTGACTTCCTCATGAAGAGAAGTCAATCTTTGTTATTCCTGACTCCCTTGCGAAGAGG
2504476 AG
66 AG
*
2504478 TCAATCTTTGACTTCCTCATGAAGAGAAGTCAATCTTTG
1 TCAATCCTTGACTTCCTCATGAAGAGAAGTCAATCTTTG
2504517 ACTTCCTCGT
Statistics
Matches: 98, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
67 98 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (67 bp):
TCAATCCTTGACTTCCTCATGAAGAGAAGTCAATCTTTGTTATTCCTGACTCCCTTGCGAAGAGG
AG
Found at i:2504434 original size:29 final size:29
Alignment explanation
Indices: 2504402--2504543 Score: 115
Period size: 29 Copynumber: 4.6 Consensus size: 29
2504392 ACTCCCTTGC
*
2504402 GAAGAGGAGTCAATCCTTGACTTCCTCAT
1 GAAGAGAAGTCAATCCTTGACTTCCTCAT
* * **
2504431 GAAGAGAAGTCAATCTTTTTTATTCGTGACTCCCTTGT
1 GAAGAGAAGTCAATC---------CTTGACTTCCTCAT
* *
2504469 GAAGAGGAGTCAATCTTTGACTTCCTCAT
1 GAAGAGAAGTCAATCCTTGACTTCCTCAT
* *
2504498 GAAGAGAAGTCAATCTTTGACTTCCTCGT
1 GAAGAGAAGTCAATCCTTGACTTCCTCAT
2504527 GAAGAGAAGTCAA-CCTT
1 GAAGAGAAGTCAATCCTT
2504544 TGTTATTATT
Statistics
Matches: 90, Mismatches: 14, Indels: 19
0.73 0.11 0.15
Matches are distributed among these distances:
28 3 0.03
29 63 0.70
38 24 0.27
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Consensus pattern (29 bp):
GAAGAGAAGTCAATCCTTGACTTCCTCAT
Found at i:2504530 original size:96 final size:96
Alignment explanation
Indices: 2504402--2504612 Score: 323
Period size: 96 Copynumber: 2.2 Consensus size: 96
2504392 ACTCCCTTGC
* * * * * *
2504402 GAAGAGGAGTCAATCCTTGACTTCCTCATGAAGAGAAGTCAATCTTTTTTATTCGTGACTCCCTT
1 GAAGAGAAGTCAATCTTTGACTTCCTCATGAAGAGAAGTCAACCTTTGTTATTAGTGACTCCCTC
* *
2504467 GTGAAGAGGAGTCAATCTTTGACTTCCTCAT
66 GAGAAGAGGAGTCAATCCTTGACTTCCTCAT
* *
2504498 GAAGAGAAGTCAATCTTTGACTTCCTCGTGAAGAGAAGTCAACCTTTGTTATTATTGACTCCCTC
1 GAAGAGAAGTCAATCTTTGACTTCCTCATGAAGAGAAGTCAACCTTTGTTATTAGTGACTCCCTC
*
2504563 GAGAAGAGGAGTCAATCCTTGACTTCCTCGT
66 GAGAAGAGGAGTCAATCCTTGACTTCCTCAT
2504594 GAAGAGAAGTCAATCTTTG
1 GAAGAGAAGTCAATCTTTG
2504613 TTATTCATTA
Statistics
Matches: 104, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
96 104 1.00
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.31
Consensus pattern (96 bp):
GAAGAGAAGTCAATCTTTGACTTCCTCATGAAGAGAAGTCAACCTTTGTTATTAGTGACTCCCTC
GAGAAGAGGAGTCAATCCTTGACTTCCTCAT
Found at i:2504544 original size:29 final size:29
Alignment explanation
Indices: 2504457--2504612 Score: 150
Period size: 29 Copynumber: 5.1 Consensus size: 29
2504447 TTTTTATTCG
* * *
2504457 TGACTCCCTTGTGAAGAGGAGTCAATCTT
1 TGACTTCCTCGTGAAGAGAAGTCAATCTT
*
2504486 TGACTTCCTCATGAAGAGAAGTCAATCTT
1 TGACTTCCTCGTGAAGAGAAGTCAATCTT
*
2504515 TGACTTCCTCGTGAAGAGAAGTCAACCTTTGTTATTAT
1 TGACTTCCTCGTGAAGAGAAGTCAA-------T-CT-T
* * * *
2504553 TGACTCCCTCGAGAAGAGGAGTCAATCCT
1 TGACTTCCTCGTGAAGAGAAGTCAATCTT
2504582 TGACTTCCTCGTGAAGAGAAGTCAATCTT
1 TGACTTCCTCGTGAAGAGAAGTCAATCTT
2504611 TG
1 TG
2504613 TTATTCATTA
Statistics
Matches: 103, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
29 77 0.75
31 1 0.01
36 1 0.01
37 1 0.01
38 23 0.22
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (29 bp):
TGACTTCCTCGTGAAGAGAAGTCAATCTT
Found at i:2504556 original size:67 final size:64
Alignment explanation
Indices: 2504486--2505060 Score: 458
Period size: 62 Copynumber: 9.0 Consensus size: 64
2504476 AGTCAATCTT
* * *
2504486 TGACTTCCTCATGAAGAGAAGTCAATCTTTGACTTCCTCGTGAAGAGAAGTCAACCTTTGTTATT
1 TGAC-TCCTCA-GAACAG-AGTCAATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATT
**
2504551 AT
63 CC
*
2504553 TGACTCCCTCGAGAAGAGGAGTCAATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATT
1 TGACT-CCTC-AGAACA-GAGTCAATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATT
*
2504618 CA
63 CC
* * * * * * *
2504620 TTACTCC-C-CAACAGAGTCAATTCTTAACTTCCTCATAAAGATAAGTCAA-CTATTGTTATTCC
1 TGACTCCTCAGAACAGAGTCAATCCTTGACTTCCTCGTGAAGAGAAGTCAATCT-TTGTTATTCC
* * * * * * * * *
2504682 TAAATCC-CAG--TAGAGTCAATACTTGACTTCATCATAAAGATAAGTCAACCTTTGTTATTCC
1 TGACTCCTCAGAACAGAGTCAATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCC
* * * * * * * * * *
2504743 TGAATCTCTGACGAAGAGGAATCAATCATTGACTTTCTCATGAAGAAAAGTCAATATGTGTTATT
1 TGACTC-CTCA-GAACA-GAGTCAATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATT
*
2504808 CT
63 CC
* * * * *
2504810 TGACTCCCCAG--CAGAGTCAATCCTTGACTTTCTCGTAAATAGAAGTCAACCTTTGTTATTCC
1 TGACTCCTCAGAACAGAGTCAATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCC
* * * * *
2504872 TGACTCC-C-CAACAGAGTCAATCCTTGACTTCTTCGTAAAGAGAAGTCAA-CTTTTTTATCCC
1 TGACTCCTCAGAACAGAGTCAATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCC
* * ** * *
2504933 TGACTCCCTCACGAAGAGAACTCAATCCTTGACTTTTTCGTGAAGAAAAATCAATCTTTGTTATT
1 TGACT-CCTCA-GAACAG-AGTCAATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATT
2504998 CC
63 CC
* *
2505000 TGACTCCTCAG--CAAAGTCAAT-ATGTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTC
1 TGACTCCTCAGAACAGAGTCAATCCT-TGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTC
2505061 TTAAAAAAGA
Statistics
Matches: 416, Mismatches: 71, Indels: 47
0.78 0.13 0.09
Matches are distributed among these distances:
61 68 0.16
62 171 0.41
63 7 0.02
64 1 0.00
65 7 0.02
66 41 0.10
67 119 0.29
68 2 0.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.33
Consensus pattern (64 bp):
TGACTCCTCAGAACAGAGTCAATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCC
Found at i:2504828 original size:190 final size:190
Alignment explanation
Indices: 2504505--2505065 Score: 650
Period size: 190 Copynumber: 2.9 Consensus size: 190
2504495 CATGAAGAGA
* * **
2504505 AGTCAATCTTTGACTTCCTCGTGAAGAGAAGTCAACCTTTGTTATTATTGACTCCCTCGA-GAAG
1 AGTCAATC-TTGACTTCATCGTAAAGAGAAGTCAACCTTTGTTATTCCTGACTCCCT-GACGAAG
* * * *
2504569 AGGAGTCAATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCATT-ACTCCCCAACA
64 AGGAATCAATCCTTGACTTTCTCGTGAAGAAAAGTCAATCTTTGTTATTC-TTGACTCCCCAGCA
* * * **
2504633 GAGTCAATTCTTAACTTCCTCATAAAGATAAGTCAA-CTATTGTTATTCCTAAAT-CCCAGTAG
128 GAGTCAATTCTTGACTTCCTCGTAAAGAGAAGTCAACCT-TTGTTATTCCTAAATCCCCAACAG
* * * *
2504695 AGTCAATACTTGACTTCATCATAAAGATAAGTCAACCTTTGTTATTCCTGAATCTCTGACGAAGA
1 AGTCAAT-CTTGACTTCATCGTAAAGAGAAGTCAACCTTTGTTATTCCTGACTCCCTGACGAAGA
* * * *
2504760 GGAATCAATCATTGACTTTCTCATGAAGAAAAGTCAATATGTGTTATTCTTGACTCCCCAGCAGA
65 GGAATCAATCCTTGACTTTCTCGTGAAGAAAAGTCAATCTTTGTTATTCTTGACTCCCCAGCAGA
* * * * *
2504825 GTCAATCCTTGACTTTCTCGTAAATAGAAGTCAACCTTTGTTATTCCTGACTCCCCAACAG
130 GTCAATTCTTGACTTCCTCGTAAAGAGAAGTCAACCTTTGTTATTCCTAAATCCCCAACAG
* * * *
2504886 AGTCAATCCTTGACTTCTTCGTAAAGAGAAGTCAA-CTTTTTTATCCCTGACTCCCTCACGAAGA
1 AGTCAAT-CTTGACTTCATCGTAAAGAGAAGTCAACCTTTGTTATTCCTGACTCCCTGACGAAGA
* * * * *
2504950 -GAACTCAATCCTTGACTTTTTCGTGAAGAAAAATCAATCTTTGTTATTCCTGACTCCTCAGCAA
65 GGAA-TCAATCCTTGACTTTCTCGTGAAGAAAAGTCAATCTTTGTTATTCTTGACTCCCCAGCAG
* * * *
2505014 AGTCAATAT-GTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCTTAAA
129 AGTCAAT-TCTTGACTTCCTCGTAAAGAGAAGTCAACCTTTGTTATTCCTAAA
2505066 AAAGAGTCAA
Statistics
Matches: 311, Mismatches: 53, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
189 7 0.02
190 264 0.85
191 40 0.13
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (190 bp):
AGTCAATCTTGACTTCATCGTAAAGAGAAGTCAACCTTTGTTATTCCTGACTCCCTGACGAAGAG
GAATCAATCCTTGACTTTCTCGTGAAGAAAAGTCAATCTTTGTTATTCTTGACTCCCCAGCAGAG
TCAATTCTTGACTTCCTCGTAAAGAGAAGTCAACCTTTGTTATTCCTAAATCCCCAACAG
Found at i:2505048 original size:252 final size:251
Alignment explanation
Indices: 2504504--2505062 Score: 619
Period size: 252 Copynumber: 2.2 Consensus size: 251
2504494 TCATGAAGAG
* * * *
2504504 AAGTCAATCTTTGACTTCCTCGTGAAGAGAAGTCAACCTTTGTTATTATTGACTCCCTCGAGAAG
1 AAGTCAAT-ATTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCTTGACTCCCTCGAG-AC
* * *
2504569 AGGAGTCAATCCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCATTACTCCCCAACAG
64 AGGAGTCAATCCTTGACTTCCTCGTAAAGAGAAGTCAACCTTTGTTATTCATGACTCCCCAACAG
* * * *
2504634 AGTCAATTCTTAACTTCCTCATAAAGATAAGTCAACTATTGTTATTCCTAAATCCCAGTAGAGTC
129 AGTCAATCCTTAACTTCCTCATAAAGAGAAGTCAACTATTGTTATCCCTAAATCCCAGAAGAGTC
* * *
2504699 AATACTTGACTTCATCATAAAGATAAGTCAACCTTTGTTATTCCTGAATCTCTGACGA
194 AATACTTGACTTCATCATAAAGAAAAATCAACCTTTGTTATTCCTGAATCTCAGACGA
* * * * *
2504757 AGAGGAATCAATCATTGACTTTCTCATGAAGAAAAGTCAATATGTGTTATTCTTGACTCCC-C-A
1 A-A-G--TCAAT-ATTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCTTGACTCCCTCGA
* * *
2504820 G-CA-GAGTCAATCCTTGACTTTCTCGTAAATAGAAGTCAACCTTTGTTATTCCTGACTCCCCAA
61 GACAGGAGTCAATCCTTGACTTCCTCGTAAAGAGAAGTCAACCTTTGTTATTCATGACTCCCCAA
* * * * * *
2504883 CAGAGTCAATCCTTGACTTCTTCGTAAAGAGAAGTCAACT-TTTTTATCCCTGACTCCCTCACGA
126 CAGAGTCAATCCTTAACTTCCTCATAAAGAGAAGTCAACTATTGTTATCCCTAAAT-CC-CA-GA
* ** * * * *
2504947 AGAGAACTCAATCCTTGACTTTTTCGTGAAGAAAAATCAATCTTTGTTATTCCTGACTCCTCAG-
188 AGAG---TCAATACTTGACTTCATCATAAAGAAAAATCAACCTTTGTTATTCCTGAAT-CTCAGA
2505011 C-A
249 CGA
2505013 AAGTCAATATGTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCTT
1 AAGTCAATAT-TGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCTT
2505063 AAAAAAGAGT
Statistics
Matches: 254, Mismatches: 40, Indels: 25
0.80 0.13 0.08
Matches are distributed among these distances:
251 13 0.05
252 130 0.51
253 4 0.02
254 7 0.03
255 4 0.02
256 3 0.01
257 89 0.35
258 4 0.02
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.33
Consensus pattern (251 bp):
AAGTCAATATTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTATTCTTGACTCCCTCGAGACAG
GAGTCAATCCTTGACTTCCTCGTAAAGAGAAGTCAACCTTTGTTATTCATGACTCCCCAACAGAG
TCAATCCTTAACTTCCTCATAAAGAGAAGTCAACTATTGTTATCCCTAAATCCCAGAAGAGTCAA
TACTTGACTTCATCATAAAGAAAAATCAACCTTTGTTATTCCTGAATCTCAGACGA
Done.