Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008028.1 Hibiscus syriacus cultivar Beakdansim tig00110504_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72062

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2422--2576
20
7.9
19
91
4
204
40
9
24
25
1.84
2422--2576
40
3.9
39
90
5
231
40
9
24
25
1.84
2485--2589
20
5.6
16
87
12
66
39
10
25
24
1.87
2604--2746
71
2.0
71
95
0
259
30
4
27
38
1.75
10755--10780
13
2.0
13
100
0
52
30
23
15
30
1.95
10803--10864
21
3.0
21
87
0
97
35
0
16
48
1.46
10811--10862
19
2.6
19
87
6
77
36
0
15
48
1.45
18838--18882
15
3.0
15
93
0
72
51
0
0
48
1.00
18870--19018
22
6.5
22
71
15
113
38
0
10
51
1.36
18905--19315
54
7.7
54
77
14
413
34
0
11
53
1.40
18998--19082
32
2.7
32
94
0
143
34
0
10
55
1.34
19021--19078
18
3.4
18
70
18
61
29
0
13
56
1.38
19062--19175
22
5.0
22
77
14
131
36
0
11
51
1.38
19019--19170
72
2.1
68
82
12
189
34
0
11
53
1.38
19178--19225
22
2.4
18
73
23
51
33
0
14
52
1.42
19187--19255
22
3.0
22
78
15
84
31
1
14
52
1.51
19290--19367
26
3.0
26
69
12
61
28
0
12
58
1.34
19235--19315
32
2.5
32
95
0
144
32
0
12
55
1.37
19383--19425
22
2.0
22
100
0
86
34
0
13
51
1.42
25372--25427
24
2.3
24
87
0
76
21
10
17
50
1.77
26442--26483
2
21.0
2
100
0
84
50
0
0
50
1.00
27328--27359
16
2.0
16
93
0
55
28
0
0
71
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27736--27810
31
2.4
31
97
0
141
49
5
6
38
1.52
42794--42834
14
3.0
14
83
16
59
80
0
12
7
0.90
43794--44284
271
1.8
270
90
2
788
34
18
22
24
1.96
43794--44284
136
3.6
135
91
1
770
34
18
22
24
1.96
54256--54326
22
3.3
22
66
29
62
25
19
2
52
1.60
54247--54331
43
2.0
43
97
2
163
25
18
2
52
1.57
58292--58325
12
2.8
12
90
0
50
41
0
0
58
0.98
60324--60417
42
2.2
43
92
5
154
14
22
29
32
1.94
60443--60556
57
2.0
56
93
1
192
36
7
14
40
1.76
62456--62483
14
2.0
14
100
0
56
21
42
28
7
1.79
62433--62469
10
3.7
10
85
0
56
27
37
24
10
1.88
62453--62498
24
1.9
24
86
0
65
23
36
32
6
1.81
62535--62707
29
5.9
29
80
9
206
20
30
34
15
1.93
62564--62680
63
1.9
61
87
7
173
21
28
34
16
1.95
67077--67108
2
16.0
2
100
0
64
50
0
0
50
1.00

Tables:   1

The End!