Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000803.1 Hibiscus syriacus cultivar Beakdansim tig00001558_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54460

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5877--5910
9
3.8
9
88
0
50
58
2
0
38
1.13
6308--6825
123
4.2
123
87
1
725
25
18
14
40
1.90
6765--6881
56
2.1
57
85
3
157
23
22
7
47
1.77
6523--7111
297
2.0
302
86
4
836
25
19
13
41
1.88
6825--7257
123
3.6
121
84
5
529
26
16
14
42
1.87
8620--8763
50
2.9
51
89
3
211
22
23
18
35
1.96
9908--10077
90
1.9
90
85
2
234
35
17
15
31
1.91
15413--15460
19
2.6
17
75
18
51
62
2
10
25
1.38
17421--17450
3
10.0
3
100
0
60
66
0
0
33
0.92
17886--17927
18
2.3
18
95
0
75
35
14
4
45
1.66
19315--19365
21
2.4
22
90
6
79
29
3
41
25
1.73
19474--19502
14
2.1
14
100
0
58
48
10
27
13
1.75
20632--20664
17
2.0
17
88
5
50
24
12
3
60
1.46
22269--22463
85
2.3
86
87
6
271
55
13
2
29
1.49
27028--27057
12
2.5
12
94
0
51
30
10
10
50
1.69
29515--29554
10
4.0
10
90
0
62
57
22
12
7
1.60
29516--29555
20
2.0
20
95
0
71
55
22
15
7
1.65
29542--29599
27
2.1
27
84
6
73
65
18
6
8
1.43
29847--29924
24
3.2
24
83
3
102
56
15
11
16
1.67
29846--29925
14
6.1
14
68
24
59
55
16
12
16
1.70
32378--32418
14
3.1
14
82
6
50
65
0
4
29
1.13
33898--33924
10
2.7
10
100
0
54
81
7
0
11
0.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34106--34146
18
2.2
18
86
4
55
65
7
4
21
1.37
42809--42901
44
2.2
43
86
3
134
34
12
23
29
1.92
53908--53947
21
1.9
21
89
0
62
20
22
32
25
1.98

Tables:   1

The End!