genome.fa.s8030.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008030.1 Hibiscus syriacus cultivar Beakdansim tig00110506_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64952

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1881--1933	14	3.3	16	76	15	56	41	22	1	33	1.65
6596--6661	23	2.9	23	83	0	87	30	22	27	19	1.98
6932--6960	7	4.3	7	95	4	51	44	24	0	31	1.54
7703--7756	2	27.0	2	100	0	108	50	50	0	0	1.00
7756--7785	2	15.0	2	100	0	60	50	0	0	50	1.00
11913--11970	15	3.8	15	73	11	55	31	5	6	56	1.47
20281--20951	81	8.3	81	93	1	1094	32	20	12	34	1.89
20261--20949	323	2.1	323	92	1	1121	32	20	12	34	1.90
21911--21972	2	31.0	2	100	0	124	50	0	0	50	1.00
24838--24907	23	3.0	23	85	0	95	20	28	21	30	1.98
24838--24931	46	2.0	46	83	0	116	21	25	21	31	1.98
25143--25167	2	12.5	2	100	0	50	52	0	0	48	1.00
27764--27824	16	3.8	16	84	0	68	21	21	16	40	1.91
28097--28146	23	2.1	24	92	3	84	50	0	2	48	1.12
31479--31550	3	24.0	3	88	5	110	36	0	0	63	0.94
32887--32936	25	2.0	25	84	11	66	42	2	0	56	1.11
36987--37015	15	1.9	15	100	0	58	24	20	6	48	1.74
44344--44378	10	3.4	10	96	4	61	88	0	11	0	0.51
44341--44380	15	2.6	14	85	14	53	87	0	12	0	0.54
45565--45762	93	2.1	93	96	1	362	29	15	21	33	1.94
46550--47174	114	5.5	114	97	0	1157	40	14	16	28	1.88
46550--47174	227	2.8	228	97	0	1166	40	14	16	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47077--47215	74	1.9	73	86	4	199	35	15	15	34	1.88
46964--47361	187	2.1	187	87	1	557	37	14	17	30	1.89
47077--47248	74	2.3	74	83	3	195	36	15	15	32	1.89
46850--47473	300	2.1	301	87	3	902	37	14	17	29	1.90
47150--47523	112	3.4	109	82	7	414	37	14	18	29	1.90
47754--47807	3	18.0	3	88	7	83	37	0	0	62	0.95
50144--50177	16	2.1	16	88	0	50	55	0	0	44	0.99
50135--50237	12	8.2	12	65	23	52	48	0	1	48	1.19
50230--50288	30	2.0	30	90	6	93	54	3	3	38	1.34
50304--50446	15	9.4	14	70	18	65	48	3	5	42	1.43
50291--50423	43	3.2	43	92	5	211	45	3	6	44	1.45
50471--50505	17	2.0	18	88	5	54	45	0	11	42	1.40
50543--50678	57	2.4	55	85	4	175	41	7	8	42	1.64
50555--50678	55	2.2	56	84	8	146	41	6	8	43	1.60
50559--50645	20	4.5	20	69	23	62	42	5	6	44	1.55
50736--50789	7	7.9	7	79	4	56	18	0	33	48	1.49
50737--50823	14	6.3	14	76	6	70	24	0	26	49	1.50
50737--50823	21	4.2	21	83	1	104	24	0	26	49	1.50
50771--50838	7	9.9	7	73	9	50	26	0	20	52	1.46
50771--50829	28	2.1	28	87	6	84	28	0	18	52	1.46
50792--50838	21	2.3	20	85	10	60	25	0	19	55	1.43
50941--51002	20	3.2	20	86	4	81	37	8	6	48	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50988--51061	37	2.1	36	84	5	96	39	10	9	40	1.73
51150--51403	100	2.5	99	83	10	284	45	3	3	47	1.37
51328--51367	13	2.9	13	88	7	53	40	5	7	47	1.54
51328--51369	15	2.9	15	79	13	52	40	4	7	47	1.52
51145--51457	2	158.5	2	68	18	158	45	3	3	47	1.37
54828--54877	23	2.2	22	79	10	55	54	6	22	18	1.65
63889--64037	15	9.2	16	69	17	58	0	41	2	55	1.19
63876--64101	6	37.7	6	80	5	152	1	40	1	55	1.20

Tables:   1

The End!