Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008031.1 Hibiscus syriacus cultivar Beakdansim tig00110511_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1788856
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 9
Found at i:870847 original size:15 final size:14
Alignment explanation
Indices: 870788--870848 Score: 52
Period size: 15 Copynumber: 4.3 Consensus size: 14
870778 ATAAAAGAGC
**
870788 AAAGAAAAAATCAA
1 AAAGAAAAAAAAAA
* *
870802 AAAG-AAAAGAAAC
1 AAAGAAAAAAAAAA
*
870815 AAAGAGAAAATAAAA
1 AAAGA-AAAAAAAAA
870830 AAAGAAAAAAAAAGA
1 AAAGAAAAAAAAA-A
870845 AAAG
1 AAAG
870849 TAAAGAACAA
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
13 9 0.24
14 11 0.30
15 17 0.46
ACGTcount: A:0.80, C:0.03, G:0.13, T:0.03
Consensus pattern (14 bp):
AAAGAAAAAAAAAA
Found at i:871933 original size:32 final size:32
Alignment explanation
Indices: 871864--871942 Score: 106
Period size: 32 Copynumber: 2.5 Consensus size: 32
871854 GAAGCAAACA
*
871864 ATTGGGGCATCTTTAAAGATTCAACAGTAAAT
1 ATTGGGGCATCTTTGAAGATTCAACAGTAAAT
* * *
871896 GTTGGGGTATCTTTGAAGATTCAACA-TCGAAT
1 ATTGGGGCATCTTTGAAGATTCAACAGT-AAAT
871928 ATTGGGGCATCTTTG
1 ATTGGGGCATCTTTG
871943 GGGATTTAAC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
31 1 0.03
32 39 0.98
ACGTcount: A:0.29, C:0.13, G:0.24, T:0.34
Consensus pattern (32 bp):
ATTGGGGCATCTTTGAAGATTCAACAGTAAAT
Found at i:872318 original size:41 final size:41
Alignment explanation
Indices: 872272--872444 Score: 115
Period size: 44 Copynumber: 4.2 Consensus size: 41
872262 TCTTCATCAC
*
872272 GTATGAGACGTGTCAACCCTGGATAACCAAGACTCATCATA
1 GTATGAGACGTGTCAACCCTAGATAACCAAGACTCATCATA
* ** * *
872313 GTATGAGTA-GTGTTATCACCCTTAGATGGCCAAGATTCATCACA
1 GTATGAG-ACGTGTCA--ACCC-TAGATAACCAAGACTCATCATA
* * * * *
872357 CTATGAGAAGTGTCATCCC---CTAACC-AGACCTCCTCATCA
1 GTATGAGACGTGTCAACCCTAGATAACCAAGA-CTCATCAT-A
* *
872396 CGTAGGAGCCGTGTCAACCCTAGATAACCAAGAC-CTATCATA
1 -GTATGAGACGTGTCAACCCTAGATAACCAAGACTC-ATCATA
872438 GTATGAG
1 GTATGAG
872445 CAGTGTTATC
Statistics
Matches: 96, Mismatches: 23, Indels: 26
0.66 0.16 0.18
Matches are distributed among these distances:
37 3 0.03
38 8 0.08
39 1 0.01
40 14 0.15
41 18 0.19
42 6 0.06
43 15 0.16
44 31 0.32
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (41 bp):
GTATGAGACGTGTCAACCCTAGATAACCAAGACTCATCATA
Found at i:872450 original size:125 final size:125
Alignment explanation
Indices: 872220--872925 Score: 672
Period size: 124 Copynumber: 5.6 Consensus size: 125
872210 TTTCCTGACT
* * * * *
872220 AAGACTCATCATAGTATGAGCAGTGTCAT-GCCTGACCAGATCTCTTCATCACGTATGAGACGTG
1 AAGATTCATCATAGTATGAGCAGTGTCATCCCCTGACCAGATCTCCTCATCACGTAGGAGCCGTG
* *
872284 TCAACCCTGGATAACCAAGA-CTCATCATAGTATGAGTAGTGTTATCACCCTTAGATGGCC
66 TCAACCCTAGATAACCAAGACCT-ATCATAGTATGAGCAGTGTTATCACCCTTAGATGGCC
* * * * *
872344 AAGATTCATCACACTATGAGAAGTGTCATCCCCTAACCAGACCTCCTCATCACGTAGGAGCCGTG
1 AAGATTCATCATAGTATGAGCAGTGTCATCCCCTGACCAGATCTCCTCATCACGTAGGAGCCGTG
* *
872409 TCAACCCTAGATAACCAAGACCTATCATAGTATGAGCAGTGTTATCACTCTTAGATGGAC
66 TCAACCCTAGATAACCAAGACCTATCATAGTATGAGCAGTGTTATCACCCTTAGATGGCC
* * *
872469 AAAATTCATCATAGTATGAGCAGTTTCAT-CCATGACCAGATCTCCTCATCACGTAGGAGCCGTG
1 AAGATTCATCATAGTATGAGCAGTGTCATCCCCTGACCAGATCTCCTCATCACGTAGGAGCCGTG
* * * * *
872533 TCAACCCTGGATAACCAAGACTTATCATATTATGAGCAGTGTTATCAGCTTTAGATGGCC
66 TCAACCCTAGATAACCAAGACCTATCATAGTATGAGCAGTGTTATCACCCTTAGATGGCC
* * * * *
872593 AAGATTCATCATTGTATGAGTAGTGTCATCCCC-GACCA-ACTGTCCTCATCACGTAGGAACTGT
1 AAGATTCATCATAGTATGAGCAGTGTCATCCCCTGACCAGA-TCTCCTCATCACGTAGGAGCCGT
* * * * *
872656 GT-AACCCCT-GATAA-CTAG-CCGTCATCATCACGTAGGAACCGTGTTATCACCTTTAGATGGC
65 GTCAA-CCCTAGATAACCAAGACC-T-ATCAT-A-GTATGAGCAGTGTTATCACCCTTAGATGGC
872717 C
125 C
* * * * * * *
872718 -AGAACTCTTCATCACGTATGAGCCGTGTTA-ACCC-GACCTGATCTTCTCATCACGTAGGAGCC
1 AAG-ATTCATCAT-A-GTATGAGCAGTGTCATCCCCTGACCAGATCTCCTCATCACGTAGGAGCC
*
872780 GTGTCAACCTTTA-ATAACC-AGAACTCT-TCATCACGTATGAGCCA-TGTTATCACCCTTCCTA
63 GTGTCAACC-CTAGATAACCAAG-AC-CTATCAT-A-GTATGAG-CAGTGTTATCACCC-T--T-
872841 AAGATGGCC
118 -AGATGGCC
* * * *
872850 AGGAACTCTACATCAT-GTATGAGAAGTGTCATCCCCTGACCATATCTCCTCATCACGTAGGAGT
1 AAG-A-T-T-CATCATAGTATGAGCAGTGTCATCCCCTGACCAGATCTCCTCATCACGTAGGAGC
872914 CGTGTCAACCCT
62 CGTGTCAACCCT
872926 TAGACGATTG
Statistics
Matches: 477, Mismatches: 73, Indels: 54
0.79 0.12 0.09
Matches are distributed among these distances:
121 1 0.00
122 4 0.01
123 13 0.03
124 169 0.35
125 141 0.30
126 32 0.07
127 44 0.09
128 3 0.01
129 2 0.00
130 2 0.00
132 8 0.02
133 15 0.03
134 4 0.01
135 34 0.07
136 5 0.01
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (125 bp):
AAGATTCATCATAGTATGAGCAGTGTCATCCCCTGACCAGATCTCCTCATCACGTAGGAGCCGTG
TCAACCCTAGATAACCAAGACCTATCATAGTATGAGCAGTGTTATCACCCTTAGATGGCC
Found at i:872702 original size:249 final size:248
Alignment explanation
Indices: 872223--872925 Score: 726
Period size: 249 Copynumber: 2.8 Consensus size: 248
872213 CCTGACTAAG
* * * *
872223 ACTCATCATAGTATGAGCAGTGTCATGCCTGACCAGATCTCTTCATCACGTATGAGACGTGTCAA
1 ACTCATCATAGTATGAGCAGTTTCAT-CCTGACCAGATCTCCTCATCACGTAGGAGCCGTGTCAA
*
872288 CCCTGGATAACCAAGACTCATCATAGTATGAGTAGTGTTATCACCCTTAGATGGCCAAGATTCAT
65 CCCTGGATAACCAAGACTCATCATAGTATGAGCAGTGTTATCACCCTTAGATGGCCAAGATTCAT
*
872353 CACACTATGAGAAGTGTCATCCCCTAACCAGACCTCCTCATCACGTAGGAGCCGTGTCAACCCTA
130 CACACTATGAGAAGTGTCATCCCCTAACCAGACCTCCTCATCACGTAGGAACCGTGTCAACCCTA
* *
872418 GATAACCAAGACCTATCATAGTATGAGCAGTGTTATCA-CTCTTAGATGGACAAA
195 GATAACCAAGACCTATCATAGTAGGAACAGTGTTATCACCT-TTAGATGGACAAA
*
872472 ATTCATCATAGTATGAGCAGTTTCATCCATGACCAGATCTCCTCATCACGTAGGAGCCGTGTCAA
1 ACTCATCATAGTATGAGCAGTTTCATCC-TGACCAGATCTCCTCATCACGTAGGAGCCGTGTCAA
* * * *
872537 CCCTGGATAACCAAGACTTATCATATTATGAGCAGTGTTATCAGCTTTAGATGGCCAAGATTCAT
65 CCCTGGATAACCAAGACTCATCATAGTATGAGCAGTGTTATCACCCTTAGATGGCCAAGATTCAT
*** * * * *
872602 CATTGTATGAGTAGTGTCATCCCC-GACCA-ACTGTCCTCATCACGTAGGAACTGTGT-AACCCC
130 CACACTATGAGAAGTGTCATCCCCTAACCAGAC-CTCCTCATCACGTAGGAACCGTGTCAA-CCC
* * * *
872664 T-GATAA-CTAG-CCGTCATCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAGA
193 TAGATAACCAAGACC-T-ATCAT-A-GTAGGAACAGTGTTATCACCTTTAGATGGACAAA
* * * * * *
872721 ACTCTTCATCACGTATGAGCCGTGTT-AACCCGACCTGATCTTCTCATCACGTAGGAGCCGTGTC
1 ACTCATCAT-A-GTATGAGCAGT-TTCATCCTGACCAGATCTCCTCATCACGTAGGAGCCGTGTC
* ** *
872785 AACCTTTAATAACC-AGAACTCTTCATCACGTATGAGCCA-TGTTATCACCCTTCCTAAAGATGG
63 AACCCTGGATAACCAAG-ACTCATCAT-A-GTATGAG-CAGTGTTATCACCC-T--T--AGATGG
* ** * * *
872848 CCAGGAACTCTACATCA-TGTATGAGAAGTGTCATCCCCTGACCATATCTCCTCATCACGTAGGA
119 CCAAG-A-T-T-CATCACACTATGAGAAGTGTCATCCCCTAACCAGACCTCCTCATCACGTAGGA
**
872912 GTCGTGTCAACCCT
180 ACCGTGTCAACCCT
872926 TAGACGATTG
Statistics
Matches: 381, Mismatches: 46, Indels: 42
0.81 0.10 0.09
Matches are distributed among these distances:
245 2 0.01
246 4 0.01
247 14 0.04
248 32 0.08
249 172 0.45
250 52 0.14
251 14 0.04
252 17 0.04
253 3 0.01
255 1 0.00
257 10 0.03
258 1 0.00
259 1 0.00
260 21 0.06
261 34 0.09
262 3 0.01
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (248 bp):
ACTCATCATAGTATGAGCAGTTTCATCCTGACCAGATCTCCTCATCACGTAGGAGCCGTGTCAAC
CCTGGATAACCAAGACTCATCATAGTATGAGCAGTGTTATCACCCTTAGATGGCCAAGATTCATC
ACACTATGAGAAGTGTCATCCCCTAACCAGACCTCCTCATCACGTAGGAACCGTGTCAACCCTAG
ATAACCAAGACCTATCATAGTAGGAACAGTGTTATCACCTTTAGATGGACAAA
Found at i:872747 original size:46 final size:44
Alignment explanation
Indices: 872680--872828 Score: 125
Period size: 38 Copynumber: 3.5 Consensus size: 44
872670 CTAGCCGTCA
* *
872680 TCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAGAACTCT
1 TCATCACGTATGAGCCGTGTTA--ACCTTTAGATGGCCAGAACTCT
* * *
872726 TCATCACGTATGAGCCGTGTTAACC---CGA---CCTGATCT-T
1 TCATCACGTATGAGCCGTGTTAACCTTTAGATGGCCAGAACTCT
* * **
872763 CTCATCACGTAGGAGCCGTGTCAACCTTTA-ATAACCAGAACTCT
1 -TCATCACGTATGAGCCGTGTTAACCTTTAGATGGCCAGAACTCT
*
872807 TCATCACGTATGAGCCATGTTA
1 TCATCACGTATGAGCCGTGTTA
872829 TCACCCTTCC
Statistics
Matches: 82, Mismatches: 13, Indels: 19
0.72 0.11 0.17
Matches are distributed among these distances:
37 1 0.01
38 29 0.35
40 1 0.01
41 2 0.02
43 25 0.30
44 4 0.05
46 20 0.24
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (44 bp):
TCATCACGTATGAGCCGTGTTAACCTTTAGATGGCCAGAACTCT
Found at i:884178 original size:20 final size:19
Alignment explanation
Indices: 884130--884167 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
884120 GAAAACCGTC
*
884130 TGCATAATAGCACGCCTAA
1 TGCATAACAGCACGCCTAA
884149 TGCATAACAGCACGCCTAA
1 TGCATAACAGCACGCCTAA
884168 CTGACTAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.37, C:0.29, G:0.16, T:0.18
Consensus pattern (19 bp):
TGCATAACAGCACGCCTAA
Found at i:888722 original size:19 final size:19
Alignment explanation
Indices: 888698--888735 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
888688 GAAAACCGTC
888698 TGCATAACAGCACGCCTAA
1 TGCATAACAGCACGCCTAA
888717 TGCATAACAGCACGCCTAA
1 TGCATAACAGCACGCCTAA
888736 CTGACTAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.32, G:0.16, T:0.16
Consensus pattern (19 bp):
TGCATAACAGCACGCCTAA
Found at i:889211 original size:23 final size:23
Alignment explanation
Indices: 889184--889233 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
889174 ACTTTTGGGG
*
889184 TGAAATGAAATAATTATTTTTCA
1 TGAAAAGAAATAATTATTTTTCA
**
889207 TGAAAAGACTTAATTATTTTTCA
1 TGAAAAGAAATAATTATTTTTCA
889230 TGAA
1 TGAA
889234 TCAATGTTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.42, C:0.06, G:0.10, T:0.42
Consensus pattern (23 bp):
TGAAAAGAAATAATTATTTTTCA
Found at i:895823 original size:19 final size:19
Alignment explanation
Indices: 895799--895835 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
895789 ATTCAAAACC
895799 GAAATGATAA-ATATAATAT
1 GAAATGA-AATATATAATAT
895818 GAAATGAAATATATAATA
1 GAAATGAAATATATAATA
895836 ACCTAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 2 0.12
19 15 0.88
ACGTcount: A:0.59, C:0.00, G:0.11, T:0.30
Consensus pattern (19 bp):
GAAATGAAATATATAATAT
Found at i:896269 original size:23 final size:23
Alignment explanation
Indices: 896242--896292 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
896232 GACTTTTGGG
*
896242 ATGAAATGAAATAATTATTTTTC
1 ATGAAAAGAAATAATTATTTTTC
**
896265 ATGAAAAGACTTAATTATTTTTC
1 ATGAAAAGAAATAATTATTTTTC
896288 ATGAA
1 ATGAA
896293 TAGTCATGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.43, C:0.06, G:0.10, T:0.41
Consensus pattern (23 bp):
ATGAAAAGAAATAATTATTTTTC
Found at i:908552 original size:18 final size:18
Alignment explanation
Indices: 908529--908608 Score: 142
Period size: 18 Copynumber: 4.4 Consensus size: 18
908519 CGATCACAAT
908529 CCGACCCGACCCGTTGAC
1 CCGACCCGACCCGTTGAC
908547 CCGACCCGACCCGTTGAC
1 CCGACCCGACCCGTTGAC
*
908565 CCAACCCGACCCGTTGAC
1 CCGACCCGACCCGTTGAC
*
908583 CCGACCCGATCCGTTGAC
1 CCGACCCGACCCGTTGAC
908601 CCGACCCG
1 CCGACCCG
908609 TTAACCGTTG
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 59 1.00
ACGTcount: A:0.17, C:0.50, G:0.21, T:0.11
Consensus pattern (18 bp):
CCGACCCGACCCGTTGAC
Found at i:911172 original size:24 final size:24
Alignment explanation
Indices: 911017--911155 Score: 217
Period size: 24 Copynumber: 5.8 Consensus size: 24
911007 TCGATTTGAT
*
911017 TTCTGATCTGATACTTGACATGGA
1 TTCTGATCTGATACTTGACTTGGA
*
911041 TTCTGATCTGATA-TCTGACATGGA
1 TTCTGATCTGATACT-TGACTTGGA
911065 TTCTGATCTGATACTTGACTTGGA
1 TTCTGATCTGATACTTGACTTGGA
*
911089 TTCTGATCTAATACTTGACTTGGA
1 TTCTGATCTGATACTTGACTTGGA
911113 TTCTGATCTGATACTTGACTTGGA
1 TTCTGATCTGATACTTGACTTGGA
* *
911137 TTTTGATATGATACTTGAC
1 TTCTGATCTGATACTTGAC
911156 GTGAATTATG
Statistics
Matches: 108, Mismatches: 5, Indels: 4
0.92 0.04 0.03
Matches are distributed among these distances:
23 1 0.01
24 106 0.98
25 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.19, T:0.41
Consensus pattern (24 bp):
TTCTGATCTGATACTTGACTTGGA
Found at i:913278 original size:18 final size:18
Alignment explanation
Indices: 913255--913318 Score: 101
Period size: 18 Copynumber: 3.6 Consensus size: 18
913245 ACCAGTCACA
913255 ACCCGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
*
913273 ACCCGACCCGACCTGTTG
1 ACCCGACCCGACCCGTTG
* *
913291 ACTCGACCTGACCCGTTG
1 ACCCGACCCGACCCGTTG
913309 ACCCGACCCG
1 ACCCGACCCG
913319 TTGACCGACG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 40 1.00
ACGTcount: A:0.17, C:0.47, G:0.22, T:0.14
Consensus pattern (18 bp):
ACCCGACCCGACCCGTTG
Found at i:913311 original size:13 final size:13
Alignment explanation
Indices: 913295--913324 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
913285 CTGTTGACTC
*
913295 GACCTGACCCGTT
1 GACCCGACCCGTT
913308 GACCCGACCCGTT
1 GACCCGACCCGTT
913321 GACC
1 GACC
913325 GACGTTGACC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.43, G:0.23, T:0.17
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:913334 original size:31 final size:33
Alignment explanation
Indices: 913277--913344 Score: 88
Period size: 31 Copynumber: 2.1 Consensus size: 33
913267 CCGTTGACCC
*
913277 GACCCGACCTGTTGACTCGACCTGACC-C-GTT
1 GACCCGACCCGTTGACTCGACCTGACCACTGTT
*
913308 GACCCGACCCGTTGAC-CGACGTTGACCACTGTT
1 GACCCGACCCGTTGACTCGAC-CTGACCACTGTT
913341 GACC
1 GACC
913345 AAAACTTTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 4 0.12
31 20 0.62
32 1 0.03
33 7 0.22
ACGTcount: A:0.18, C:0.38, G:0.24, T:0.21
Consensus pattern (33 bp):
GACCCGACCCGTTGACTCGACCTGACCACTGTT
Found at i:915925 original size:24 final size:24
Alignment explanation
Indices: 915770--915908 Score: 208
Period size: 24 Copynumber: 5.8 Consensus size: 24
915760 TTGATTTGAT
* *
915770 TTCTGATCTGATACTTGACATGGA
1 TTCTGATATGATACTTGACTTGGA
*
915794 TTCTGATATGATATCTT-ACATGGA
1 TTCTGATATGATA-CTTGACTTGGA
*
915818 TTCTGATCTGATACTTGACTTGGA
1 TTCTGATATGATACTTGACTTGGA
*
915842 TTCTGATATGATAATTGACTTGGA
1 TTCTGATATGATACTTGACTTGGA
915866 TTCTGATATGATACTTGACTTGGA
1 TTCTGATATGATACTTGACTTGGA
*
915890 TTTTGATATGATACTTGAC
1 TTCTGATATGATACTTGAC
915909 GTGAATTATG
Statistics
Matches: 106, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
23 3 0.03
24 100 0.94
25 3 0.03
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42
Consensus pattern (24 bp):
TTCTGATATGATACTTGACTTGGA
Found at i:917013 original size:37 final size:36
Alignment explanation
Indices: 916953--917071 Score: 143
Period size: 35 Copynumber: 3.3 Consensus size: 36
916943 ATCTCATTAT
** *
916953 CATTTTTC-AACAAACATAGACCAAACTTTGAAATAT
1 CATTTTTCAAACAAACATTTACCAAACTTTGAAA-AC
* *
916989 TATTTTTCAAAGAAACATTTACCAAACTTTGAAAAC
1 CATTTTTCAAACAAACATTTACCAAACTTTGAAAAC
* *
917025 CA-TTTTCAAATAAACATTTACCAAACTTTGAAAGC
1 CATTTTTCAAACAAACATTTACCAAACTTTGAAAAC
917060 CATTATTTCAAA
1 CATT-TTTCAAA
917072 GTTGGTTGCT
Statistics
Matches: 72, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
35 33 0.46
36 10 0.14
37 29 0.40
ACGTcount: A:0.44, C:0.18, G:0.05, T:0.33
Consensus pattern (36 bp):
CATTTTTCAAACAAACATTTACCAAACTTTGAAAAC
Found at i:917028 original size:21 final size:21
Alignment explanation
Indices: 917004--917063 Score: 53
Period size: 21 Copynumber: 3.2 Consensus size: 21
916994 TTCAAAGAAA
917004 CATTTACCAAACTTTGAAAAC
1 CATTTACCAAACTTTGAAAAC
*
917025 CATTT-TCAAA---T--AAA-
1 CATTTACCAAACTTTGAAAAC
*
917039 CATTTACCAAACTTTGAAAGC
1 CATTTACCAAACTTTGAAAAC
917060 CATT
1 CATT
917064 ATTTCAAAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 14
0.63 0.07 0.30
Matches are distributed among these distances:
14 5 0.17
15 7 0.24
17 1 0.03
18 1 0.03
20 6 0.21
21 9 0.31
ACGTcount: A:0.42, C:0.22, G:0.05, T:0.32
Consensus pattern (21 bp):
CATTTACCAAACTTTGAAAAC
Found at i:921609 original size:35 final size:36
Alignment explanation
Indices: 921521--921637 Score: 166
Period size: 35 Copynumber: 3.2 Consensus size: 36
921511 CCCATTATCA
* * *
921521 TTTTC-AACAAACATCTACCAAACTTTGAAAAACTAT
1 TTTTCAAAGAAACATTTACCAAACTTTG-AAAACCAT
*
921557 TTTTCAAAGAAATATTTACCAAACTTTGAAAACCAT
1 TTTTCAAAGAAACATTTACCAAACTTTGAAAACCAT
921593 TTTT-AAAGAAACATTTACCAAACTTTGAAAACCAT
1 TTTTCAAAGAAACATTTACCAAACTTTGAAAACCAT
921628 TATTTCAAAG
1 T-TTTCAAAG
921638 TTGGTTGTCA
Statistics
Matches: 73, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
35 31 0.42
36 19 0.26
37 23 0.32
ACGTcount: A:0.44, C:0.18, G:0.05, T:0.32
Consensus pattern (36 bp):
TTTTCAAAGAAACATTTACCAAACTTTGAAAACCAT
Found at i:922723 original size:17 final size:16
Alignment explanation
Indices: 922705--922737 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
922695 TTTAAGTTTA
922705 ATAA-TATTTATA-AG
1 ATAATTATTTATATAG
922719 ATAATTATTTATATAG
1 ATAATTATTTATATAG
922735 ATA
1 ATA
922738 TACAGAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.24
15 8 0.47
16 5 0.29
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (16 bp):
ATAATTATTTATATAG
Found at i:926191 original size:161 final size:160
Alignment explanation
Indices: 925903--926215 Score: 531
Period size: 161 Copynumber: 1.9 Consensus size: 160
925893 AGTTGCCGGC
925903 TTGTCAAACATACAAAGAGTTCATATCTACCTGCTTCTTATAAACCTTCACATCCTTTTCTCTTG
1 TTGTCAAACATACAAAGAGTTCATATCTACCTGCTTCTTATAAACCTTCACATCCTTTTCTC-TG
925968 TCCATAGTGATATTTAGGGCCTTTCTAGAGTGAGGAACATTGATGGTACCTAGTGCATATCCTTC
65 TCCATAGTGATATTTAGGGCCTTTCTAGAGTGAGGAACATTGATGGTACCTAGTGCATATCCTTC
* *
926033 ATTGATGATCACAGTAGAACCAGTTGTCAAA
130 ATTGATGACCACACTAGAACCAGTTGTCAAA
*
926064 TTGTCAAACATACAAAGAGTTCCTATCTACCTGCTTCTTATAAACCTTCACATCCTTTTCTC-GT
1 TTGTCAAACATACAAAGAGTTCATATCTACCTGCTTCTTATAAACCTTCACATCCTTTTCTCTGT
* *
926128 CCATAGTGATATTTGGGGCC-TTCTAGAGTGAGGAACATTGATGGTACCTAGTGGTGTATATCCT
66 CCATAGTGATATTTAGGGCCTTTCTAGAGTGAGGAACATTGATGGTACCTA---GTGCATATCCT
926192 TCATTGATGACCACACTAGAACCA
128 TCATTGATGACCACACTAGAACCA
926216 CATGGACCTA
Statistics
Matches: 144, Mismatches: 5, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
158 30 0.21
159 21 0.15
161 93 0.65
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.34
Consensus pattern (160 bp):
TTGTCAAACATACAAAGAGTTCATATCTACCTGCTTCTTATAAACCTTCACATCCTTTTCTCTGT
CCATAGTGATATTTAGGGCCTTTCTAGAGTGAGGAACATTGATGGTACCTAGTGCATATCCTTCA
TTGATGACCACACTAGAACCAGTTGTCAAA
Found at i:928726 original size:21 final size:21
Alignment explanation
Indices: 928702--928742 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
928692 TGCCAGGTGC
* *
928702 CTCCTCTAGCTGCTGCCGCCA
1 CTCCTCCAGCTACTGCCGCCA
*
928723 CTCCTCCAGCTATTGCCGCC
1 CTCCTCCAGCTACTGCCGCC
928743 GTAGATTCCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.49, G:0.17, T:0.24
Consensus pattern (21 bp):
CTCCTCCAGCTACTGCCGCCA
Found at i:929732 original size:21 final size:21
Alignment explanation
Indices: 929695--929734 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
929685 AATTAGAGTT
*
929695 TTTTAATCTTTATATTTTATA
1 TTTTAATCTATATATTTTATA
929716 TTTTAATC-ATATAATTTTA
1 TTTTAATCTATAT-ATTTTA
929735 GTTTTTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTTAATCTATATATTTTATA
Found at i:929740 original size:21 final size:20
Alignment explanation
Indices: 929694--929740 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 20
929684 GAATTAGAGT
*
929694 TTTTTAATCTTTATATTTTA
1 TTTTTAATCTATATATTTTA
929714 TATTTTAATC-ATATAATTTTA
1 T-TTTTAATCTATAT-ATTTTA
929735 GTTTTT
1 -TTTTT
929741 TTATTTTGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
20 4 0.17
21 18 0.78
22 1 0.04
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (20 bp):
TTTTTAATCTATATATTTTA
Found at i:929990 original size:23 final size:23
Alignment explanation
Indices: 929964--930007 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
929954 AAATAAATAA
*
929964 ATATCCTATT-TTTATAATTATAT
1 ATATCATATTATTT-TAATTATAT
*
929987 ATATTATATTATTTTAATTAT
1 ATATCATATTATTTTAATTAT
930008 TTTTAGAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 15 0.83
24 3 0.17
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (23 bp):
ATATCATATTATTTTAATTATAT
Found at i:930148 original size:8 final size:9
Alignment explanation
Indices: 930109--930148 Score: 50
Period size: 8 Copynumber: 4.8 Consensus size: 9
930099 AAGTAAATAA
930109 ATATATTAT
1 ATATATTAT
*
930118 TTATA-TAT
1 ATATATTAT
930126 ATATA-TAT
1 ATATATTAT
930134 ATATATTA-
1 ATATATTAT
930142 ATATATT
1 ATATATT
930149 TTCTAAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
8 22 0.79
9 6 0.21
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (9 bp):
ATATATTAT
Found at i:934850 original size:72 final size:72
Alignment explanation
Indices: 934733--934867 Score: 218
Period size: 72 Copynumber: 1.9 Consensus size: 72
934723 ATACAATAAA
934733 GCTTGAGTTATCCCCATAAAGCAATTGGTTAATAGCCCCAACTTTATGGATAATATTCAGCTAGT
1 GCTTGAGTTATCCCCATAAAGCAATTGGTTAATAGCCCCAACTTTATGGATAATATTCAGCTAGT
934798 TTGTTAT
66 TTGTTAT
* * * *
934805 GCTTGAGTTATCCCCCTAAAGTAATTGGTTAATCA-CCCCGACTTTATGGATAATATTTAGCTA
1 GCTTGAGTTATCCCCATAAAGCAATTGGTTAAT-AGCCCCAACTTTATGGATAATATTCAGCTA
934868 ACCTATTATA
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
72 57 0.98
73 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (72 bp):
GCTTGAGTTATCCCCATAAAGCAATTGGTTAATAGCCCCAACTTTATGGATAATATTCAGCTAGT
TTGTTAT
Found at i:938955 original size:54 final size:54
Alignment explanation
Indices: 938897--939033 Score: 159
Period size: 54 Copynumber: 2.5 Consensus size: 54
938887 AAATCACAGA
**
938897 AAATGATGAATGTATTATCAAATGTTTTAC-AAATATCTTGCCAGAAGCCACAAG
1 AAATGATGAATGTATTATCAAATGTTTTACGAAA-ATCCGGCCAGAAGCCACAAG
* * * * * *
938951 AAATGATGAATGTGTTATCAAAAGCTTTACGAAAATCCGGGCATAAGCCACGAG
1 AAATGATGAATGTATTATCAAATGTTTTACGAAAATCCGGCCAGAAGCCACAAG
* * *
939005 AAATGATGAATATATTGTCACATGTTTTA
1 AAATGATGAATGTATTATCAAATGTTTTA
939034 TGAACCAATG
Statistics
Matches: 68, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
54 65 0.96
55 3 0.04
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (54 bp):
AAATGATGAATGTATTATCAAATGTTTTACGAAAATCCGGCCAGAAGCCACAAG
Found at i:940255 original size:45 final size:45
Alignment explanation
Indices: 940201--940584 Score: 570
Period size: 45 Copynumber: 8.5 Consensus size: 45
940191 GGGAGCTTTT
*
940201 TGATATTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
*
940246 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCTTTCAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* * *
940291 TGATGTTTTCAAAACATTTGGGTCATCTGTAAGACCTTCAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* *
940336 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCTTTTAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
*
940381 TGATGTTTTCAAAACCTTTGGGTCATCTGTAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* * *
940426 TTATGTTTTCAAAACCTTCGGGTCATCTGTAAGACCTTCAGTGCT
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* * *
940471 TGATGTTTTCAAAACCTTCGAGTCCTCTGTAAGCCCTTCAATGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* ** * *
940516 TGATGCTTTCAAAACCTTCGGGTCATCCATAAGACCTGCAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
*
940561 GGATGTTTTCAAAAAGCCTTCGGG
1 TGATGTTTTC-AAAA-CCTTCGGG
940585 AGCTTTTTGA
Statistics
Matches: 303, Mismatches: 34, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 291 0.96
46 4 0.01
47 8 0.03
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (45 bp):
TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
Found at i:940256 original size:76 final size:74
Alignment explanation
Indices: 940125--940267 Score: 232
Period size: 76 Copynumber: 1.9 Consensus size: 74
940115 CTTCAGTGCA
*
940125 TGATGTTTTCAAAACCTTCGGGTCATCTATAAGACCTGCAGTGCATGATGTTTTCAAAAAGCCTT
1 TGATATTTTCAAAACCTTCGGGTCATCTATAAGACCTGCAGTGCATGATGTTTTC-AAAA-CCTT
940190 CGGGAGCTTTT
64 CGGGAGCTTTT
* * *
940201 TGATATTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCG
1 TGATATTTTCAAAACCTTCGGGTCATCTATAAGACCTGCAGTGCATGATGTTTTCAAAACCTTCG
940266 GG
66 GG
940268 TCATCTGTAA
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
74 8 0.13
75 4 0.06
76 51 0.81
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.34
Consensus pattern (74 bp):
TGATATTTTCAAAACCTTCGGGTCATCTATAAGACCTGCAGTGCATGATGTTTTCAAAACCTTCG
GGAGCTTTT
Found at i:940449 original size:135 final size:135
Alignment explanation
Indices: 940201--940686 Score: 628
Period size: 135 Copynumber: 3.7 Consensus size: 135
940191 GGGAGCTTTT
*
940201 TGATATTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCG
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCG
* *
940266 GGTCATCTGTAAG-CCTTTCAGTGCATGATGTTTTCAAAACATTTGGGTCATCTGTAAGACCTTC
66 GGTCATCTGTAAGACC-TTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGACCTTC
940330 AGTGCA
130 AGTGCA
* * *
940336 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCTTTTAGTGCATGATGTTTTCAAAACCTTTG
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCG
* *
940401 GGTCATCTGTAAGCCCTTCAGTGCATTATGTTTTCAAAACCTTCGGGTCATCTGTAAGACCTTCA
66 GGTCATCTGTAAGACCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGACCTTCA
*
940466 GTGCT
131 GTGCA
* * * *
940471 TGATGTTTTCAAAACCTTCGAGTCCTCTGTAAGCCCTTCAATGCATGATGCTTTCAAAACCTTCG
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCG
** * * *
940536 GGTCATCCATAAGACCTGCAGTGCAGGATGTTTTCAAAAAGCCTTCGGG--AGCT-T------TT
66 GGTCATCTGTAAGACCTTCAGTGCATGATGTTTTC-AAAA-CCTTCGGGTCATCTGTAAGACCTT
940592 ---TG-A
129 CAGTGCA
* *
940595 T-A--TTTTCAAAACCTTCGGGTCATTTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCG
* *
940657 GGTCATCTGTAAGACCTACAGTGCAAGATG
66 GGTCATCTGTAAGACCTTCAGTGCATGATG
940687 ATAGGACCTC
Statistics
Matches: 315, Mismatches: 33, Indels: 20
0.86 0.09 0.05
Matches are distributed among these distances:
121 80 0.25
123 1 0.00
124 1 0.00
125 2 0.01
128 2 0.01
134 1 0.00
135 214 0.68
136 6 0.02
137 8 0.03
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.34
Consensus pattern (135 bp):
TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCG
GGTCATCTGTAAGACCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGACCTTCA
GTGCA
Found at i:940646 original size:45 final size:45
Alignment explanation
Indices: 940592--940686 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 45
940582 GGGAGCTTTT
* * * * *
940592 TGATATTTTCAAAACCTTCGGGTCATTTGTAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAACCTTCAGGTCATCTGTAAGACCTACAGTGCA
940637 TGATGTTTTCAAAACCTTCAGGTCATCTGTAAGACCTACAGTGCA
1 TGATGTTTTCAAAACCTTCAGGTCATCTGTAAGACCTACAGTGCA
*
940682 AGATG
1 TGATG
940687 ATAGGACCTC
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (45 bp):
TGATGTTTTCAAAACCTTCAGGTCATCTGTAAGACCTACAGTGCA
Found at i:940847 original size:3 final size:3
Alignment explanation
Indices: 940839--940912 Score: 54
Period size: 3 Copynumber: 26.7 Consensus size: 3
940829 TTTCATTTCA
* * * *
940839 TAT TAT TAT TAT TAT TAT TAA AAT TAA AAT TAT TAT TAT TA- TAT TA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
940885 TAT T-T T-T TAAT T-T T-T TAT TAT TA- TAT TA
1 TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TA
940913 ATAAAAAAAT
Statistics
Matches: 57, Mismatches: 8, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
2 14 0.25
3 41 0.72
4 2 0.04
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:941089 original size:21 final size:21
Alignment explanation
Indices: 941063--941122 Score: 102
Period size: 21 Copynumber: 2.9 Consensus size: 21
941053 TGCCAGGTGC
*
941063 CTCCTCCAGCTACTACCGACA
1 CTCCTCCAGCTGCTACCGACA
*
941084 CTCCTCCAGCTGCTGCCGACA
1 CTCCTCCAGCTGCTACCGACA
941105 CTCCTCCAGCTGCTACCG
1 CTCCTCCAGCTGCTACCG
941123 TCGTAGATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.17, C:0.48, G:0.15, T:0.20
Consensus pattern (21 bp):
CTCCTCCAGCTGCTACCGACA
Found at i:943355 original size:78 final size:78
Alignment explanation
Indices: 943258--943442 Score: 282
Period size: 78 Copynumber: 2.4 Consensus size: 78
943248 ATAAACAAGT
* * * *
943258 CACATTACTTGTTGGAGTTAAGCCATTAATATAGGTTTTATAATGCATGAATCCAGTAGTGAACT
1 CACATTAATGGTTGGAGTTAAGCCATTAATATAGGTTGTATAATGCATGAATCCAGTAGTGAAAT
*
943323 GTGAATATCGAGC
66 GTGAAAATCGAGC
* *
943336 GACATTAATGGTTGGAGTTAAGCCATTAATCTAGGTTGTATAATGCATGAATCCAGTAGTGAAAT
1 CACATTAATGGTTGGAGTTAAGCCATTAATATAGGTTGTATAATGCATGAATCCAGTAGTGAAAT
943401 GTGAAAATCGAGC
66 GTGAAAATCGAGC
* *
943414 CA-ATTAATGGCTGGAGTTAAGGCATTAAT
1 CACATTAATGGTTGGAGTTAAGCCATTAAT
943443 CTCGACAACA
Statistics
Matches: 97, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
77 25 0.26
78 72 0.74
ACGTcount: A:0.34, C:0.12, G:0.23, T:0.31
Consensus pattern (78 bp):
CACATTAATGGTTGGAGTTAAGCCATTAATATAGGTTGTATAATGCATGAATCCAGTAGTGAAAT
GTGAAAATCGAGC
Found at i:943511 original size:21 final size:22
Alignment explanation
Indices: 943471--943511 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
943461 TAGTGTTAAA
* *
943471 GCATTAATCTAGGTTGTATAAT
1 GCATGAATCTAGGATGTATAAT
943493 GCATGAATCTA-GATGTATA
1 GCATGAATCTAGGATGTATA
943512 TTAGCAGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.34, C:0.10, G:0.20, T:0.37
Consensus pattern (22 bp):
GCATGAATCTAGGATGTATAAT
Found at i:947154 original size:29 final size:29
Alignment explanation
Indices: 947121--947211 Score: 103
Period size: 29 Copynumber: 3.1 Consensus size: 29
947111 TAATTATTGT
* *
947121 TTTAGTCCTTTAAGTTTTTGTTTTTACTA
1 TTTAGTCCTTTAAATTTCTGTTTTTACTA
* *
947150 TTTAG-CCTTTTAAATTTCTATTTTTGCTA
1 TTTAGTCC-TTTAAATTTCTGTTTTTACTA
* *
947179 TTTTAGTCTTTTAAATTTCTGTTTTAACTA
1 -TTTAGTCCTTTAAATTTCTGTTTTTACTA
947209 TTT
1 TTT
947212 TATCCCTTCA
Statistics
Matches: 51, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
28 2 0.04
29 25 0.49
30 23 0.45
31 1 0.02
ACGTcount: A:0.20, C:0.11, G:0.08, T:0.62
Consensus pattern (29 bp):
TTTAGTCCTTTAAATTTCTGTTTTTACTA
Found at i:947190 original size:30 final size:30
Alignment explanation
Indices: 947120--947213 Score: 118
Period size: 30 Copynumber: 3.2 Consensus size: 30
947110 GTAATTATTG
* * *
947120 TTTTAGTCCTTTAAGTTTTTGTTTTTACTA
1 TTTTAGTCTTTTAAATTTCTGTTTTTACTA
* * *
947150 -TTTAGCCTTTTAAATTTCTATTTTTGCTA
1 TTTTAGTCTTTTAAATTTCTGTTTTTACTA
*
947179 TTTTAGTCTTTTAAATTTCTGTTTTAACTA
1 TTTTAGTCTTTTAAATTTCTGTTTTTACTA
947209 TTTTA
1 TTTTA
947214 TCCCTTCAAA
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
29 23 0.43
30 30 0.57
ACGTcount: A:0.20, C:0.11, G:0.07, T:0.62
Consensus pattern (30 bp):
TTTTAGTCTTTTAAATTTCTGTTTTTACTA
Found at i:949187 original size:30 final size:30
Alignment explanation
Indices: 949147--949205 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
949137 TTGTTTGTAT
*
949147 TAACTCGTTTTTCTCTTTTGTTTGTGTTAC
1 TAACTCGTTTTTCTCTTTTGTATGTGTTAC
*
949177 TAACTTGTTTTTCTCTTTTGTATGTGTTA
1 TAACTCGTTTTTCTCTTTTGTATGTGTTA
949206 TTTTTTGTCC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.12, C:0.14, G:0.14, T:0.61
Consensus pattern (30 bp):
TAACTCGTTTTTCTCTTTTGTATGTGTTAC
Found at i:951131 original size:8 final size:8
Alignment explanation
Indices: 951115--951182 Score: 61
Period size: 8 Copynumber: 8.6 Consensus size: 8
951105 ATTTGTAATG
951115 TAATAATAT
1 TAAT-ATAT
951124 TAATATAT
1 TAATATAT
* *
951132 AAATATAA
1 TAATATAT
951140 TAATAATAT
1 TAAT-ATAT
951149 TAATATA-
1 TAATATAT
951156 TAATA-A-
1 TAATATAT
*
951162 TAATATAA
1 TAATATAT
*
951170 TAATATAG
1 TAATATAT
951178 TAATA
1 TAATA
951183 ATATATGCAA
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
6 6 0.12
7 6 0.12
8 28 0.55
9 11 0.22
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (8 bp):
TAATATAT
Found at i:951141 original size:19 final size:19
Alignment explanation
Indices: 951117--951188 Score: 94
Period size: 19 Copynumber: 3.8 Consensus size: 19
951107 TTGTAATGTA
*
951117 ATAATATTAATATATAAAT
1 ATAATAATAATATATAAAT
951136 ATAATAATAATAT-TAATAT
1 ATAATAATAATATATAA-AT
951155 ATAATAATAATATA-ATAAT
1 ATAATAATAATATATA-AAT
*
951174 ATAGTAATAATATAT
1 ATAATAATAATATAT
951189 GCAAACTCGG
Statistics
Matches: 47, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
18 3 0.06
19 43 0.91
20 1 0.02
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.40
Consensus pattern (19 bp):
ATAATAATAATATATAAAT
Found at i:951143 original size:25 final size:25
Alignment explanation
Indices: 951115--951171 Score: 91
Period size: 25 Copynumber: 2.3 Consensus size: 25
951105 ATTTGTAATG
951115 TAATAATATTAATATATAA-ATATAA
1 TAATAATATTAATATATAATA-ATAA
951140 TAATAATATTAATATATAATAATAA
1 TAATAATATTAATATATAATAATAA
951165 T-ATAATA
1 TAATAATA
951172 ATATAGTAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
24 6 0.19
25 24 0.77
26 1 0.03
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (25 bp):
TAATAATATTAATATATAATAATAA
Found at i:951144 original size:3 final size:3
Alignment explanation
Indices: 951115--951185 Score: 67
Period size: 3 Copynumber: 23.7 Consensus size: 3
951105 ATTTGTAATG
* *
951115 TAA TAA TAT TAA TATA TAA -ATA TAA TAA TAA TAT TAA TATA TAA TAA
1 TAA TAA TAA TAA TA-A TAA TA-A TAA TAA TAA TAA TAA TA-A TAA TAA
*
951162 TAA T-A TAA TAA T-A TAG TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
951186 TATGCAAACT
Statistics
Matches: 56, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
2 5 0.09
3 44 0.79
4 7 0.12
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:951183 original size:25 final size:24
Alignment explanation
Indices: 951110--951188 Score: 61
Period size: 21 Copynumber: 3.7 Consensus size: 24
951100 GTAATATTTG
*
951110 TAATGTAATAATAT-TAAT-AT-A
1 TAATATAATAATATATAATAATAA
*
951131 TAA-AT-ATAATA-ATAATATTAA
1 TAATATAATAATATATAATAATAA
951152 T-ATATAATAATA-AT-ATAATAA
1 TAATATAATAATATATAATAATAA
951173 T-ATAGTAATAATATAT
1 TAATA-TAATAATATAT
951189 GCAAACTCGG
Statistics
Matches: 48, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
19 10 0.21
20 3 0.06
21 17 0.35
22 16 0.33
23 2 0.04
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.41
Consensus pattern (24 bp):
TAATATAATAATATATAATAATAA
Found at i:951375 original size:19 final size:20
Alignment explanation
Indices: 951333--951375 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
951323 AAAACATCCT
* * *
951333 ACCCGGAGGTTTTACAGATG
1 ACCCGAAGGTTTTACAAATC
951353 ACCCGAAGG-TTTACAAATC
1 ACCCGAAGGTTTTACAAATC
951372 ACCC
1 ACCC
951376 AGAGGATTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (20 bp):
ACCCGAAGGTTTTACAAATC
Found at i:951530 original size:118 final size:119
Alignment explanation
Indices: 951323--951608 Score: 459
Period size: 118 Copynumber: 2.4 Consensus size: 119
951313 ATTAAAAGTA
* * *
951323 AAAACATCCTACCCGGAGGTTTTACAGATGACCCGAAGG-TTTACAAATCACCCAGAGGATTTAA
1 AAAACATCTTACCCTGAGGTTTTACAGATGACCCGAAGGTTTTACAAATTACCCAGAGGATTTAA
* *
951387 TTTTCTAGAATATTAAATGAGAAACTTTGAAAATCGTTTTCTCATTTT-ATGCG
66 TTTTCTAGAACATTAAATGAGAAACTTTGAAAATCGCTTTCTCATTTTCATGCG
**
951440 AAAACATCTTACCCTGAGGTTTTACAGATGACCCGAAGGTTTTACAAATTACCTGGAGGATTTAA
1 AAAACATCTTACCCTGAGGTTTTACAGATGACCCGAAGGTTTTACAAATTACCCAGAGGATTTAA
951505 TTTTCTAGAACATTAAATGAGAAACTTTGAAAATCGCTTTCTCATTTTCATGCG
66 TTTTCTAGAACATTAAATGAGAAACTTTGAAAATCGCTTTCTCATTTTCATGCG
* * * *
951559 AAAACATCTTACCCTAAGGTTTTACAGATAACCCGGAGGTTTTAAAAATT
1 AAAACATCTTACCCTGAGGTTTTACAGATGACCCGAAGGTTTTACAAATT
951609 CATGGGAAAT
Statistics
Matches: 156, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
117 37 0.24
118 68 0.44
119 51 0.33
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (119 bp):
AAAACATCTTACCCTGAGGTTTTACAGATGACCCGAAGGTTTTACAAATTACCCAGAGGATTTAA
TTTTCTAGAACATTAAATGAGAAACTTTGAAAATCGCTTTCTCATTTTCATGCG
Found at i:958054 original size:45 final size:47
Alignment explanation
Indices: 957990--958080 Score: 132
Period size: 45 Copynumber: 2.0 Consensus size: 47
957980 CATATATATT
* * * *
957990 CTAACCTCGTGCTTTCTAGTTCC-AT-GATTTGTTTGGAAAATAAAC
1 CTAACCACGTGATTTCTAGTTCCTATGGATTTATTAGGAAAATAAAC
958035 CTAACCACGTGATTTCTAGTTCCTATGGATTTATTAGGAAAATAAA
1 CTAACCACGTGATTTCTAGTTCCTATGGATTTATTAGGAAAATAAA
958081 ACAATACTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
45 21 0.52
46 2 0.05
47 17 0.43
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (47 bp):
CTAACCACGTGATTTCTAGTTCCTATGGATTTATTAGGAAAATAAAC
Found at i:960539 original size:22 final size:24
Alignment explanation
Indices: 960511--960585 Score: 88
Period size: 22 Copynumber: 3.3 Consensus size: 24
960501 GTAATATTTG
960511 TAATATAATAACACTAATATAT-A
1 TAATATAATAACACTAATATATAA
* *
960534 -AATATAATAATATTAATATATAA
1 TAATATAATAACACTAATATATAA
960557 TAATATAAT-A-A-TAATATAGTAA
1 TAATATAATAACACTAATATA-TAA
960579 TAATATA
1 TAATATA
960586 TGCAAACTCG
Statistics
Matches: 47, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
21 7 0.15
22 30 0.64
23 2 0.04
24 8 0.17
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.37
Consensus pattern (24 bp):
TAATATAATAACACTAATATATAA
Found at i:960544 original size:16 final size:17
Alignment explanation
Indices: 960525--960585 Score: 72
Period size: 16 Copynumber: 3.5 Consensus size: 17
960515 ATAATAACAC
960525 TAATATATAA-ATATAA
1 TAATATATAATATATAA
960541 TAATAT-TAATATATAA
1 TAATATATAATATATAA
*
960557 TAATATAATAATAATATAG
1 TAATAT-ATAAT-ATATAA
960576 TAATAATATA
1 TAAT-ATATA
960586 TGCAAACTCG
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
15 3 0.08
16 18 0.46
18 4 0.10
19 12 0.31
20 2 0.05
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (17 bp):
TAATATATAATATATAA
Found at i:960562 original size:8 final size:8
Alignment explanation
Indices: 960511--960585 Score: 65
Period size: 8 Copynumber: 9.9 Consensus size: 8
960501 GTAATATTTG
960511 TAATATAA
1 TAATATAA
*
960519 TAACACTAA
1 TAATA-TAA
960528 T-ATAT-A
1 TAATATAA
960534 -AATATAA
1 TAATATAA
960541 TAATATTAA
1 TAATA-TAA
960550 T-ATATAA
1 TAATATAA
960557 TAATATAA
1 TAATATAA
960565 T-A-ATAA
1 TAATATAA
960571 T-ATAGTAA
1 TAATA-TAA
960579 TAATATA
1 TAATATA
960586 TGCAAACTCG
Statistics
Matches: 56, Mismatches: 2, Indels: 18
0.74 0.03 0.24
Matches are distributed among these distances:
6 11 0.20
7 8 0.14
8 26 0.46
9 11 0.20
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.37
Consensus pattern (8 bp):
TAATATAA
Found at i:960569 original size:11 final size:11
Alignment explanation
Indices: 960515--960585 Score: 70
Period size: 11 Copynumber: 6.0 Consensus size: 11
960505 TATTTGTAAT
*
960515 ATAATAACACTA
1 ATAATAATA-TA
960527 ATATATAAATATA
1 ATA-AT-AATATA
*
960540 ATAATATTAATA
1 ATAATAAT-ATA
960552 TATAATAATATA
1 -ATAATAATATA
960564 ATAATAATATA
1 ATAATAATATA
*
960575 GTAATAATATA
1 ATAATAATATA
960586 TGCAAACTCG
Statistics
Matches: 51, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
11 23 0.45
12 11 0.22
13 14 0.27
14 3 0.06
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.37
Consensus pattern (11 bp):
ATAATAATATA
Found at i:960570 original size:14 final size:14
Alignment explanation
Indices: 960511--960583 Score: 67
Period size: 14 Copynumber: 4.9 Consensus size: 14
960501 GTAATATTTG
* *
960511 TAATATAATAACAC
1 TAATATAATAATAA
*
960525 TAATATATAAATATAA
1 TAATATA-ATA-ATAA
960541 TAATATTAATATATAA
1 TAATA-TAATA-ATAA
960557 TAATATAATAATAA
1 TAATATAATAATAA
960571 T-ATAGTAATAATA
1 TAATA-TAATAATA
960584 TATGCAAACT
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
13 3 0.06
14 20 0.39
15 7 0.14
16 19 0.37
17 2 0.04
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.37
Consensus pattern (14 bp):
TAATATAATAATAA
Found at i:961121 original size:12 final size:12
Alignment explanation
Indices: 961104--961146 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 12
961094 GGATCAACAT
961104 ATTTGCATCTGC
1 ATTTGCATCTGC
961116 ATTTGCATCTTTGC
1 ATTTGCATC--TGC
*
961130 ATTTTGCATCTGT
1 A-TTTGCATCTGC
961143 ATTT
1 ATTT
961147 CATTTTTTAG
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 12 0.44
13 3 0.11
14 4 0.15
15 8 0.30
ACGTcount: A:0.16, C:0.19, G:0.14, T:0.51
Consensus pattern (12 bp):
ATTTGCATCTGC
Found at i:962212 original size:32 final size:32
Alignment explanation
Indices: 962170--962233 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
962160 AATAAATGAT
*
962170 GAATGATAGGGCATTTTTGGAGATTCAACATC
1 GAATGATAGGGCATCTTTGGAGATTCAACATC
* *
962202 GAATGTTAGGGCATCTTTGGGGATTCAACATC
1 GAATGATAGGGCATCTTTGGAGATTCAACATC
962234 CTGATGTGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31
Consensus pattern (32 bp):
GAATGATAGGGCATCTTTGGAGATTCAACATC
Found at i:962378 original size:36 final size:37
Alignment explanation
Indices: 962314--962463 Score: 148
Period size: 36 Copynumber: 4.1 Consensus size: 37
962304 GCTGAGATTG
* * *
962314 TTTCTCTCAAAACAAAGTGTCGTCTCG-TTAGAGACAAT
1 TTTCTCTAAAAACAAA-TTTTGTCTCGCTT-GAGACAAT
* *
962352 TTTCT-TAAAAACAAATTTTGTCTCGTTTGAGACAGT
1 TTTCTCTAAAAACAAATTTTGTCTCGCTTGAGACAAT
* *
962388 TTTCTCTGAAAACAAAATTT-TCTCGCTTGAGACAA-
1 TTTCTCTAAAAACAAATTTTGTCTCGCTTGAGACAAT
* * *
962423 TTTCTCTCAAAAC-AATTTTCTTCTCGCTTGAGACATT
1 TTTCTCTAAAAACAAATTTT-GTCTCGCTTGAGACAAT
962460 TTTC
1 TTTC
962464 CTTTGAGATA
Statistics
Matches: 96, Mismatches: 11, Indels: 11
0.81 0.09 0.09
Matches are distributed among these distances:
34 5 0.05
35 12 0.12
36 47 0.49
37 27 0.28
38 5 0.05
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.39
Consensus pattern (37 bp):
TTTCTCTAAAAACAAATTTTGTCTCGCTTGAGACAAT
Found at i:962613 original size:29 final size:30
Alignment explanation
Indices: 962564--962623 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 30
962554 TGAGACAATT
*
962564 TCTTCGAACAAAAATTATTGAGTTTGTTTC
1 TCTTCGAACAAAAATTATTGAGTCTGTTTC
*
962594 TCTT-GAACAAAAGTCT-TTGAGTCTGTTTC
1 TCTTCGAACAAAAAT-TATTGAGTCTGTTTC
962623 T
1 T
962624 ATAAAAACAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 22 0.81
30 5 0.19
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.43
Consensus pattern (30 bp):
TCTTCGAACAAAAATTATTGAGTCTGTTTC
Found at i:962723 original size:65 final size:66
Alignment explanation
Indices: 962589--962795 Score: 185
Period size: 65 Copynumber: 3.2 Consensus size: 66
962579 TATTGAGTTT
** *
962589 GTTTCTCTT-G-AACA-AAAGTCTTTGAG-TCTGTTTCTATAAAAACAAAGTTTTGTCTCTCTTG
1 GTTTCTCTTGGAAACACAAA-TCTTTGAGATC-GTTTCCCTTAAAACAAA--TTTGTCTCTCTTG
*
962650 AGATA
62 AGACA
* * * * *
962655 GTTTTTCTTGGAAA-A-AAATCTTTTGAGTTTGTTTCCCTTGAAACAAATTTGTCTATCTTGAGA
1 GTTTCTCTTGGAAACACAAATC-TTTGAGATCGTTTCCCTTAAAACAAATTTGTCTCTCTTGAGA
962718 CA
65 CA
** * *
962720 GTTTCTCTT-GAAACACCCATCTTTGAGATCGTTTCCCTTAAAACGAATTTTTTCTCTCTTGAGA
1 GTTTCTCTTGGAAACACAAATCTTTGAGATCGTTTCCCTTAAAAC-AAATTTGTCTCTCTTGAGA
962784 CA
65 CA
*
962786 ATTTCTCTTG
1 GTTTCTCTTG
962796 AAGTATCATT
Statistics
Matches: 115, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
64 4 0.03
65 45 0.39
66 39 0.34
67 24 0.21
68 3 0.03
ACGTcount: A:0.26, C:0.18, G:0.14, T:0.42
Consensus pattern (66 bp):
GTTTCTCTTGGAAACACAAATCTTTGAGATCGTTTCCCTTAAAACAAATTTGTCTCTCTTGAGAC
A
Found at i:963297 original size:131 final size:129
Alignment explanation
Indices: 962830--963340 Score: 553
Period size: 131 Copynumber: 3.9 Consensus size: 129
962820 TCTTGAAACC
* * * *
962830 ATCATCCCTAAAAATGACCA-GTCGTCATCATCGCGTAGGAACCATGTCATCCCCCGACCAGACC
1 ATCATCCCTAAAGATGA-CATGCCATC-TCATCACGTAGGAACCATGTCATCCCCCGACCAGACC
* * *
962894 TCCTCATCACGTAAGAGCCGTGTCACCCCTAGATAACCAGTCATCCTCATCACGTAGAAACCATG
64 TCCTCATCACGTAAGAGCCGTGTCACCCCTAGATAACCAGTCGTCCTCATCATGTAG-AACCGTG
962959 TT
128 TT
* * * ** *
962961 ATCATCCCTAAAGAT-AGCCTACAATCCTCATCACGTAGGAACTGTGTCATCCCCCGACTAGACC
1 ATCATCCCTAAAGATGA-CATGCCAT-CTCATCACGTAGGAACCATGTCATCCCCCGACCAGACC
* * * *
963025 TCCTCATCACGTAAGATCTGAGTCA-CCCTAGATAACCAGTCGTCCTCATCGTGTAGGAACCGTG
64 TCCTCATCACGTAAGAGCCGTGTCACCCCTAGATAACCAGTCGTCCTCATCATGTA-GAACCGTG
963089 TT
128 TT
* * * * *
963091 ATCACCCTCCCTAAAGATGGCCAAGACGTCTTCATCACGTAGGAACAATGTCATCCCCCGACCAG
1 ATCA---TCCCTAAAGAT-GACATGCCATC-TCATCACGTAGGAACCATGTCATCCCCCGACCAG
* * ** *
963156 ACCTCCTCATCACTTAGGAGCCGTGTCACCCCTAGATAACCAACCGTCCTCATCATATATGAACC
61 ACCTCCTCATCACGTAAGAGCCGTGTCACCCCTAGATAACCAGTCGTCCTCATCATGTA-GAACC
963221 GTGTT
125 GTGTT
* * * *
963226 ATCATCCCTAAAGATGACATGCCATACTCATCACGTAGGAACCGTCTCATCCCCCAACTAGACCT
1 ATCATCCCTAAAGATGACATGCCAT-CTCATCACGTAGGAACCATGTCATCCCCCGACCAGACCT
* * * *
963291 CCTCATCACGTAGGAGTCGTGTCACCCCTA-AGTAACCAGTCATTCTCATC
65 CCTCATCACGTAAGAGCCGTGTCACCCCTAGA-TAACCAGTCGTCCTCATC
963341 GCATAAAAAT
Statistics
Matches: 315, Mismatches: 53, Indels: 24
0.80 0.14 0.06
Matches are distributed among these distances:
130 42 0.13
131 152 0.48
132 13 0.04
133 12 0.04
134 56 0.18
135 40 0.13
ACGTcount: A:0.28, C:0.34, G:0.15, T:0.23
Consensus pattern (129 bp):
ATCATCCCTAAAGATGACATGCCATCTCATCACGTAGGAACCATGTCATCCCCCGACCAGACCTC
CTCATCACGTAAGAGCCGTGTCACCCCTAGATAACCAGTCGTCCTCATCATGTAGAACCGTGTT
Found at i:965852 original size:27 final size:28
Alignment explanation
Indices: 965791--965852 Score: 74
Period size: 27 Copynumber: 2.2 Consensus size: 28
965781 AAAGAAAATC
*
965791 AGAAAAGAAATTGAAGCACTCCAAAAGA
1 AGAAAAGAAATTGAAGCACTCAAAAAGA
* *
965819 A-AGAAAGAAATT-CAGCATTCAAAAAGA
1 AGA-AAAGAAATTGAAGCACTCAAAAAGA
965846 AGAAAAG
1 AGAAAAG
965853 CAAAGAAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
27 18 0.62
28 11 0.38
ACGTcount: A:0.60, C:0.11, G:0.18, T:0.11
Consensus pattern (28 bp):
AGAAAAGAAATTGAAGCACTCAAAAAGA
Found at i:972572 original size:29 final size:29
Alignment explanation
Indices: 972539--972615 Score: 93
Period size: 29 Copynumber: 2.6 Consensus size: 29
972529 GTAATTAATG
*
972539 TTTCTGTTTTTACTATTTAGCCTTTTAAA
1 TTTCTGTTTTTACTATTTAGCCATTTAAA
* *
972568 TTTCTGTTTTTGCTATTTTAGTCATTTAAA
1 TTTCTGTTTTTACTA-TTTAGCCATTTAAA
*
972598 TTTTTG-TTTTAGCTATTT
1 TTTCTGTTTTTA-CTATTT
972616 TAGATCTTCA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
29 21 0.51
30 20 0.49
ACGTcount: A:0.18, C:0.10, G:0.09, T:0.62
Consensus pattern (29 bp):
TTTCTGTTTTTACTATTTAGCCATTTAAA
Found at i:972596 original size:30 final size:30
Alignment explanation
Indices: 972539--972618 Score: 108
Period size: 30 Copynumber: 2.7 Consensus size: 30
972529 GTAATTAATG
* *
972539 TTTCTGTTTTTACTA-TTTAGCCTTTTAAA
1 TTTCTGTTTTTGCTATTTTAGCCATTTAAA
*
972568 TTTCTGTTTTTGCTATTTTAGTCATTTAAA
1 TTTCTGTTTTTGCTATTTTAGCCATTTAAA
* *
972598 TTTTTGTTTTAGCTATTTTAG
1 TTTCTGTTTTTGCTATTTTAG
972619 ATCTTCAAGA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
29 14 0.31
30 31 0.69
ACGTcount: A:0.19, C:0.10, G:0.10, T:0.61
Consensus pattern (30 bp):
TTTCTGTTTTTGCTATTTTAGCCATTTAAA
Found at i:975570 original size:103 final size:103
Alignment explanation
Indices: 975391--975596 Score: 376
Period size: 103 Copynumber: 2.0 Consensus size: 103
975381 GACATTGGAG
975391 TACGAAAAACAATTGAAGGGAAAAAATCCTAGAGCAATAAAACTATAAAATTTGTATTCTCACCA
1 TACGAAAAACAATTGAAGGGAAAAAATCCTAGAGCAATAAAACTATAAAATTTGTATTCTCACCA
*
975456 TGCACAAGACAGGCTTGAATCAACTACCAGAATAATTA
66 TGCACAAGACAGGCTTGAATCAACAACCAGAATAATTA
**
975494 TACGAAAAACAATTGAAGGGAAAAAATCCTAGAGCTCTAAAACTATAAAATTTGTATTCTCACCA
1 TACGAAAAACAATTGAAGGGAAAAAATCCTAGAGCAATAAAACTATAAAATTTGTATTCTCACCA
*
975559 TGCAGAAGACAGGCTTGAATCAACAACCAGAATAATTA
66 TGCACAAGACAGGCTTGAATCAACAACCAGAATAATTA
975597 CCATATATAC
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
103 99 1.00
ACGTcount: A:0.46, C:0.17, G:0.14, T:0.22
Consensus pattern (103 bp):
TACGAAAAACAATTGAAGGGAAAAAATCCTAGAGCAATAAAACTATAAAATTTGTATTCTCACCA
TGCACAAGACAGGCTTGAATCAACAACCAGAATAATTA
Found at i:975764 original size:99 final size:98
Alignment explanation
Indices: 975593--975784 Score: 303
Period size: 99 Copynumber: 1.9 Consensus size: 98
975583 AACCAGAATA
* * *
975593 ATTACCATATATACAGTTAGCATCAATCACCAGAATGATCAACAAGAACAAGACGGAGAAATCAG
1 ATTACCATATAAACAATTAGCATCAATCACCAGAATGATCAACAAGAACAAGACAGAGAAATCAG
975658 GGGAGGAAGGGGAACTAAAGATGACACATTAATG
66 GGGAGGAA-GGGAACTAAAGATGACACATTAATG
* * * *
975692 ATTACCATATAAACAATTAGCATCAATCGCCAGAATGCTCAACCAGAACAAGACAGAGAAATGAG
1 ATTACCATATAAACAATTAGCATCAATCACCAGAATGATCAACAAGAACAAGACAGAGAAATCAG
*
975757 GGGAGGAAGGGAACTAAAGATGGCACAT
66 GGGAGGAAGGGAACTAAAGATGACACAT
975785 CCACAATTTT
Statistics
Matches: 85, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
98 19 0.22
99 66 0.78
ACGTcount: A:0.44, C:0.17, G:0.22, T:0.16
Consensus pattern (98 bp):
ATTACCATATAAACAATTAGCATCAATCACCAGAATGATCAACAAGAACAAGACAGAGAAATCAG
GGGAGGAAGGGAACTAAAGATGACACATTAATG
Found at i:981518 original size:52 final size:52
Alignment explanation
Indices: 981443--981547 Score: 192
Period size: 52 Copynumber: 2.0 Consensus size: 52
981433 GTGTCTTCCG
*
981443 GACCAGATCTACATGGTAATAACATATTTTAATTTAGGTCAAAAAGCATCCA
1 GACCAAATCTACATGGTAATAACATATTTTAATTTAGGTCAAAAAGCATCCA
*
981495 GACCAAATCTACATGGTAATAACATATTTTAATTTAGGTCCAAAAGCATCCA
1 GACCAAATCTACATGGTAATAACATATTTTAATTTAGGTCAAAAAGCATCCA
981547 G
1 G
981548 GATTCTGTAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.40, C:0.18, G:0.13, T:0.29
Consensus pattern (52 bp):
GACCAAATCTACATGGTAATAACATATTTTAATTTAGGTCAAAAAGCATCCA
Found at i:1002648 original size:15 final size:15
Alignment explanation
Indices: 1002630--1002672 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
1002620 CGTATATTTT
1002630 AATTTTAATTTTTAA
1 AATTTTAATTTTTAA
*
1002645 AATTTTGAA-ATTTAA
1 AATTTT-AATTTTTAA
1002660 AATTTTAATTTTT
1 AATTTTAATTTTT
1002673 TATTAAATAG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
14 2 0.08
15 20 0.83
16 2 0.08
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (15 bp):
AATTTTAATTTTTAA
Found at i:1004463 original size:21 final size:21
Alignment explanation
Indices: 1004434--1004477 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
1004424 TACTTCATAC
*
1004434 TGTTGATGTGACAATCCACGA
1 TGTTAATGTGACAATCCACGA
*
1004455 TGTTAATGTGACAGTCCACGA
1 TGTTAATGTGACAATCCACGA
1004476 TG
1 TG
1004478 ATTGGTGATG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (21 bp):
TGTTAATGTGACAATCCACGA
Found at i:1007826 original size:19 final size:19
Alignment explanation
Indices: 1007799--1007860 Score: 101
Period size: 19 Copynumber: 3.4 Consensus size: 19
1007789 TAAATATTCT
*
1007799 TGATTTTTATAGTAAACTG
1 TGATATTTATAGTAAACTG
1007818 TGATATTTATAGTAAACTG
1 TGATATTTATAGTAAACTG
1007837 TGATA-TT-TAGTAAACTG
1 TGATATTTATAGTAAACTG
1007854 TGATATT
1 TGATATT
1007861 AACTATTTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
17 15 0.37
18 3 0.07
19 23 0.56
ACGTcount: A:0.34, C:0.05, G:0.16, T:0.45
Consensus pattern (19 bp):
TGATATTTATAGTAAACTG
Found at i:1011197 original size:3 final size:3
Alignment explanation
Indices: 1011187--1011275 Score: 99
Period size: 3 Copynumber: 29.3 Consensus size: 3
1011177 TTTATATATT
* * * *
1011187 TAA T-A TAA TAA TAA TAA TAA TAA TAA TAA CAT TTA TAA TAA TTA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
1011234 TAA TAA TATA TAA TAA TAT TAA TTA TAA TAA TAA TAAA TAA T
1 TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA T
1011276 TATGGGTAAA
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
2 2 0.03
3 63 0.89
4 6 0.08
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:1011595 original size:36 final size:35
Alignment explanation
Indices: 1011513--1011600 Score: 117
Period size: 34 Copynumber: 2.5 Consensus size: 35
1011503 CTGAACAAGC
* * * *
1011513 TCTT-TCATTGTGAACTTCTTCTTTTTCAGATTAG
1 TCTTCTCATTATGAACTTTTTCTTCTTCAGATGAG
1011547 T-TTCTCATTATGAACTTTTTCTTCTTCAGATGAG
1 TCTTCTCATTATGAACTTTTTCTTCTTCAGATGAG
1011581 TTCTTCTCATTATGAACTTT
1 -TCTTCTCATTATGAACTTT
1011601 CTCTGGAAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
33 2 0.04
34 27 0.57
35 1 0.02
36 17 0.36
ACGTcount: A:0.19, C:0.18, G:0.10, T:0.52
Consensus pattern (35 bp):
TCTTCTCATTATGAACTTTTTCTTCTTCAGATGAG
Found at i:1011670 original size:109 final size:109
Alignment explanation
Indices: 1011548--1011894 Score: 418
Period size: 109 Copynumber: 3.2 Consensus size: 109
1011538 TCAGATTAGT
1011548 TTCTCATTATGAACTTTTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGC
1 TTCTCATTATGAACTTTTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGC
** *
1011613 TGATTTATCAAGTGATGGATTTGAACAAAAGGTTGAACAAATTC
66 TGATCCATCAAGTGATGAATTTGAACAAAAGGTTGAACAAATTC
*
1011657 TTCTCATTATGAACTTCTTTCCTTCTTCAGATGACGAGTTCTT-TCATTGTGAAC--TCTACTGG
1 TTCTCATTATGAACTT-TTT-CTTCTTCAGAT---GAGTTCTTCTCATTATGAACTTTCT-CTGG
* * * **
1011719 -GAA-TTGATCCATCAAATGATGAATTCAAACAAAA-GTTGAACAAATTC
60 AAAAGCTGATCCATCAAGTGATGAATTTGAACAAAAGGTTGAACAAATTC
* *
1011766 TTCTCATTATGAAATTCTTCTTCCTTCTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAA
1 TTCTCATTATGAACTTTTTCTT-C-T-TCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAA
* * * * * *
1011831 AGCGGATCCATCAAGTGATGTATTTGAGCAAAAGATTGAATAAATTA
63 AGCTGATCCATCAAGTGATGAATTTGAACAAAAGGTTGAACAAATTC
1011878 TTCTCATTATGAACTTT
1 TTCTCATTATGAACTTT
1011895 CTCTGGAAAA
Statistics
Matches: 198, Mismatches: 25, Indels: 27
0.79 0.10 0.11
Matches are distributed among these distances:
107 11 0.06
108 13 0.07
109 49 0.25
110 38 0.19
111 40 0.20
112 29 0.15
113 10 0.05
114 8 0.04
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.38
Consensus pattern (109 bp):
TTCTCATTATGAACTTTTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGC
TGATCCATCAAGTGATGAATTTGAACAAAAGGTTGAACAAATTC
Found at i:1011954 original size:72 final size:73
Alignment explanation
Indices: 1011802--1011967 Score: 248
Period size: 72 Copynumber: 2.3 Consensus size: 73
1011792 CTCAGATGAG
*
1011802 TTCTTCTCATTATGAACTTTCTCTGGAAAAGCGGATCCATCAAGTGATGTATTTGAGCAAAAGAT
1 TTCTTCTCATTATGAACTTTCTCTGGAAAAGCGGATCCATCAAGTGATGGATTTGAGCAAAAGAT
*
1011867 TGAATAAA
66 TGAACAAA
* * * *
1011875 TTATTCTCATTATGAACTTTCTCTGGAAAAGCTGAT-TATC-AGATGATGGATTTGAGCAAAAGG
1 TTCTTCTCATTATGAACTTTCTCTGGAAAAGCGGATCCATCAAG-TGATGGATTTGAGCAAAAGA
1011938 TTGAACAAA
65 TTGAACAAA
1011947 TTCTTCTCATTATGAA-TTTCT
1 TTCTTCTCATTATGAACTTTCT
1011968 TCTTCCTTCT
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 7 0.08
72 44 0.52
73 34 0.40
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (73 bp):
TTCTTCTCATTATGAACTTTCTCTGGAAAAGCGGATCCATCAAGTGATGGATTTGAGCAAAAGAT
TGAACAAA
Found at i:1012066 original size:182 final size:182
Alignment explanation
Indices: 1011748--1012077 Score: 524
Period size: 182 Copynumber: 1.8 Consensus size: 182
1011738 TGAATTCAAA
1011748 CAAAAGTTGAACAAATTCTTCTCATTATGAAATTCTTCTTCCTTCTCAGATGAGTTCTTCTCATT
1 CAAAAGTTGAACAAATTCTTCTCATTATGAAATTCTTCTTCCTTCTCAGATGAGTTCTTCTCATT
* *
1011813 ATGAACTTTCTCTGGAAAAGCGGATCCATCAAGTGATGTATTTGAGCAAAAGATTGAATAAATTA
66 ATGAACTTTCTCTGGAAAAGCGGATCCATCAAGTGATGGATTTGAGCAAAAGATTGAACAAATTA
1011878 TTCTCATTATGAACTTTCTCTGGAAAAGCTGATTATCAGATGATGGATTTGAG
131 TTCTCATTATGAA-TTTCTCTGGAAAAGCTGATTATCAGATGATGGATTTGAG
* *
1011931 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGTGTTC-T-TC-
1 CAAAA-GTTGAACAAATTCTTCTCATTATGAAATTCTTCTTCCTTC-TCAGATGAGTTCTTCTCA
* * *
1011993 TTATGAACTTTTTCTGGAAAAGCTGATCCATC-AGATGATGGATTTGAGCAAAAGGTTGAACAAA
64 TTATGAACTTTCTCTGGAAAAGCGGATCCATCAAG-TGATGGATTTGAGCAAAAGATTGAACAAA
*
1012057 TTCTTCTCATTATGAATTTCT
128 TTATTCTCATTATGAATTTCT
1012078 TCTTCCGTCT
Statistics
Matches: 136, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
181 7 0.05
182 71 0.52
183 7 0.05
184 40 0.29
185 11 0.08
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (182 bp):
CAAAAGTTGAACAAATTCTTCTCATTATGAAATTCTTCTTCCTTCTCAGATGAGTTCTTCTCATT
ATGAACTTTCTCTGGAAAAGCGGATCCATCAAGTGATGGATTTGAGCAAAAGATTGAACAAATTA
TTCTCATTATGAATTTCTCTGGAAAAGCTGATTATCAGATGATGGATTTGAG
Found at i:1012418 original size:109 final size:113
Alignment explanation
Indices: 1011878--1013342 Score: 2344
Period size: 109 Copynumber: 13.5 Consensus size: 113
1011868 GAATAAATTA
* *
1011878 TTCTCATTATGAACTTTCTCTGGAAAAGCTGAT-TATCAGATGATGGATTTGAGCAAAAGGTTGA
1 TTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGA
*
1011942 ACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGTGTTC
66 ACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTC
1011990 -T-TC-TTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGA
1 TTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGA
*
1012052 ACAAATTCTTCTCATTATGAATTTCTTCTTCCGTCTTCAGATGAGTTC
66 ACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTC
** *
1012100 TTCTCATTATGAACTTTTTCTGGAAAAGCTGATTTATCAGATGATGGATTTGAGCAAATGGTTGA
1 TTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGA
1012165 ACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGAT--GTTC
66 ACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTC
1012211 TT-TCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAA-GTTGA
1 TTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGA
1012274 ACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTC
66 ACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTC
1012322 TTCT-ATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGA-TTGAGCAAAAGGTTGA
1 TTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGA
* *
1012385 ACAAATTCTTCTCATTAGGAA-TTCTTCTT-CTTCTTCAGATGTG-TC
66 ACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTC
1012430 TTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGA
1 TTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGA
1012495 AC-AATTCTTCTCATTATGAATTTCTTCTT-C--CTTCAGATGAG---
66 ACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTC
1012536 TTCTCATTATGAACTTTTTCTGGAAAAAGCTGATCCATC--A-GATGGATTTGAGC-AAAGGTTG
1 TTCTCATTATGAACTTTTTCTGG-AAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTG
* *
1012597 AACAAATTCTTCTCATTAGGAATTTCTTCTTCCTTCTTCAGATGTGTTC
65 AACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTC
1012646 TTCT-ATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGA
1 TTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGA
1012710 ACAAATTCTTCTCA-TATGAATTTCTTCTTCCTTCTTC--A-GAGTTC
66 ACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTC
*
1012754 TTCTCATTATGAACTTTTTCTGGAAAAGTTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGA
1 TTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGA
*
1012819 ACAAATTCTTCTCATTATGAA-TTCTTCTTCCTTCTTCAGATGTGTTC
66 ACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTC
1012866 TTCTCATTATGAACTTTTTCTGGAAAAGCTGATCC-TCAGATGATGGATTTGAGCAAAAGGTTGA
1 TTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGA
1012930 ACAAA-TCTT-TCATTATGAA--T-TTCTTCCTTCTTCAGATGAG-T-
66 ACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTC
1012971 TT-TCA-TATG-ACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGA
1 TTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGA
* * *
1013033 ACAAATTC-T-TCATTATGAA--T-TTCTT-CATC-TCAGATGTGTTT
66 ACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTC
1013074 TTCTCATTATGAACTTTTT-TGGAAAAGCTGATCCATC--A-GATGGATTTGAGCAAAAGG-TGA
1 TTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGA
*
1013134 ACAAATTCTTCTCATTATGAATTTCTT-TTCCTTCTTCAGATGTGTTC
66 ACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTC
1013181 TTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGA
1 TTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGA
1013246 ACAAATTCTTCTCATTATGAATTTCTTCTT-CTTCTTCAGATGAGTTC
66 ACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTC
* *
1013293 TTCTCATTATGAACTTTTT-T-G-AAAGCGGATCCATCATATGATGGATTTGA
1 TTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGA
1013343 ATCTTTGCTA
Statistics
Matches: 1275, Mismatches: 30, Indels: 99
0.91 0.02 0.07
Matches are distributed among these distances:
101 19 0.01
102 47 0.04
103 79 0.06
104 47 0.04
105 29 0.02
106 36 0.03
107 74 0.06
108 59 0.05
109 291 0.23
110 193 0.15
111 172 0.13
112 130 0.10
113 99 0.08
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (113 bp):
TTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGA
ACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTC
Found at i:1012465 original size:220 final size:226
Alignment explanation
Indices: 1011878--1013342 Score: 2380
Period size: 220 Copynumber: 6.7 Consensus size: 226
1011868 GAATAAATTA
* *
1011878 TTCTCATTATGAACTTTCTCTGGAAAAGCTGAT-TATCAGATGATGGATTTGAGCAAAAGGTTGA
1 TTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGA
1011942 ACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGTGTTC-T-TC-TTATGAACTTT
66 ACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGTGTTCTTCTCATTATGAACTTT
1012004 TTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTA
131 TTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTA
*
1012069 TGAATTTCTTCTTCCGTCTTCAGATGAGTTC
196 TGAATTTCTTCTTCCTTCTTCAGATGAGTTC
** *
1012100 TTCTCATTATGAACTTTTTCTGGAAAAGCTGATTTATCAGATGATGGATTTGAGCAAATGGTTGA
1 TTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGA
1012165 ACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGA--TGTTCTT-TCATTATGAACTTT
66 ACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGTGTTCTTCTCATTATGAACTTT
1012227 TTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAA-GTTGAACAAATTCTTCTCATTA
131 TTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTA
1012291 TGAATTTCTTCTTCCTTCTTCAGATGAGTTC
196 TGAATTTCTTCTTCCTTCTTCAGATGAGTTC
1012322 TTCT-ATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGA-TTGAGCAAAAGGTTGA
1 TTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGA
*
1012385 ACAAATTCTTCTCATTAGGAA-TTCTTCTT-CTTCTTCAGATGTG-TCTTCTCATTATGAACTTT
66 ACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGTGTTCTTCTCATTATGAACTTT
1012447 TTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAAC-AATTCTTCTCATTA
131 TTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTA
1012511 TGAATTTCTTCTT-C--CTTCAGATGAG---
196 TGAATTTCTTCTTCCTTCTTCAGATGAGTTC
1012536 TTCTCATTATGAACTTTTTCTGGAAAAAGCTGATCCATC--A-GATGGATTTGAGC-AAAGGTTG
1 TTCTCATTATGAACTTTTTCTGG-AAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTG
*
1012597 AACAAATTCTTCTCATTAGGAATTTCTTCTTCCTTCTTCAGATGTGTTCTTCT-ATTATGAACTT
65 AACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGTGTTCTTCTCATTATGAACTT
1012661 TTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCA-T
130 TTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATT
1012725 ATGAATTTCTTCTTCCTTCTTC--A-GAGTTC
195 ATGAATTTCTTCTTCCTTCTTCAGATGAGTTC
*
1012754 TTCTCATTATGAACTTTTTCTGGAAAAGTTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGA
1 TTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGA
1012819 ACAAATTCTTCTCATTATGAA-TTCTTCTTCCTTCTTCAGATGTGTTCTTCTCATTATGAACTTT
66 ACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGTGTTCTTCTCATTATGAACTTT
1012883 TTCTGGAAAAGCTGATCC-TCAGATGATGGATTTGAGCAAAAGGTTGAACAAA-TCTT-TCATTA
131 TTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTA
1012945 TGAA--T-TTCTTCCTTCTTCAGATGAG-T-
196 TGAATTTCTTCTTCCTTCTTCAGATGAGTTC
1012971 TT-TCA-TATG-ACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGA
1 TTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGA
* *
1013033 ACAAATTC-T-TCATTATGAA--T-TTCTT-CATC-TCAGATGTGTTTTTCTCATTATGAACTTT
66 ACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGTGTTCTTCTCATTATGAACTTT
1013091 TT-TGGAAAAGCTGATCCATC--A-GATGGATTTGAGCAAAAGG-TGAACAAATTCTTCTCATTA
131 TTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTA
*
1013151 TGAATTTCTT-TTCCTTCTTCAGATGTGTTC
196 TGAATTTCTTCTTCCTTCTTCAGATGAGTTC
1013181 TTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGA
1 TTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGA
*
1013246 ACAAATTCTTCTCATTATGAATTTCTTCTT-CTTCTTCAGATGAGTTCTTCTCATTATGAACTTT
66 ACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGTGTTCTTCTCATTATGAACTTT
* *
1013310 TT-T-G-AAAGCGGATCCATCATATGATGGATTTGA
131 TTCTGGAAAAGCTGATCCATCAGATGATGGATTTGA
1013343 ATCTTTGCTA
Statistics
Matches: 1177, Mismatches: 17, Indels: 100
0.91 0.01 0.08
Matches are distributed among these distances:
204 8 0.01
205 23 0.02
206 11 0.01
207 15 0.01
208 49 0.04
209 6 0.01
210 7 0.01
211 4 0.00
212 14 0.01
213 98 0.08
214 80 0.07
215 126 0.11
216 50 0.04
217 42 0.04
218 51 0.04
219 58 0.05
220 208 0.18
221 112 0.10
222 91 0.08
223 124 0.11
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (226 bp):
TTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGA
ACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGTGTTCTTCTCATTATGAACTTT
TTCTGGAAAAGCTGATCCATCAGATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTA
TGAATTTCTTCTTCCTTCTTCAGATGAGTTC
Found at i:1013763 original size:22 final size:22
Alignment explanation
Indices: 1013738--1013788 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
1013728 CATAAAGTTT
* *
1013738 TCATCTTTGAAAAGAGAATCTG
1 TCATCTTTAAAAAGAGAATCTA
1013760 TCATCTTTAAAAAGAGAATCTA
1 TCATCTTTAAAAAGAGAATCTA
1013782 TCATCTT
1 TCATCTT
1013789 GAAGAGTGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (22 bp):
TCATCTTTAAAAAGAGAATCTA
Found at i:1014276 original size:53 final size:53
Alignment explanation
Indices: 1014158--1014355 Score: 235
Period size: 53 Copynumber: 3.8 Consensus size: 53
1014148 ACTGGTTATA
* * * * *
1014158 AAAACA-TTGACAATACATTCATCTTTTTATGTGGTTTCTG-TC-GAG-ATGT
1 AAAACATTTGACAACACATTCATCCTTTTCTGTGGCTTCTGCTCAGAGTTTGT
*
1014207 AAAACACTTGACAACACATTCATCCTTTTCTGTGGCTTCTGCTCAGAGTTTGT
1 AAAACATTTGACAACACATTCATCCTTTTCTGTGGCTTCTGCTCAGAGTTTGT
* * **
1014260 AAAACATTTGACAACACATTCATCC-TTTCTTGTGGTTTTTGCTCAGACGTTCAT
1 AAAACATTTGACAACACATTCATCCTTTTC-TGTGGCTTCTGCTCAGA-GTTTGT
* *
1014314 AAAGCGTTTGACAACACATTCATCCTTTTCTGTGGCTTCTGC
1 AAAACATTTGACAACACATTCATCCTTTTCTGTGGCTTCTGC
1014356 CAAGATTTCT
Statistics
Matches: 128, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
49 6 0.05
50 30 0.23
51 2 0.02
52 7 0.05
53 42 0.33
54 37 0.29
55 4 0.03
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.38
Consensus pattern (53 bp):
AAAACATTTGACAACACATTCATCCTTTTCTGTGGCTTCTGCTCAGAGTTTGT
Found at i:1027880 original size:21 final size:20
Alignment explanation
Indices: 1027852--1027890 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
1027842 CATTGCAGGA
*
1027852 ATTTATGGCCTCGACAAAAG
1 ATTTATGGCCTCAACAAAAG
*
1027872 ATTTCATGGCTTCAACAAA
1 ATTT-ATGGCCTCAACAAA
1027891 GACCTTGATG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (20 bp):
ATTTATGGCCTCAACAAAAG
Found at i:1038892 original size:15 final size:16
Alignment explanation
Indices: 1038874--1038904 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
1038864 TTCATTTTCT
1038874 TCCAA-TTTTTCATAA
1 TCCAAGTTTTTCATAA
1038889 TCCAAGTTTTTCATAA
1 TCCAAGTTTTTCATAA
1038905 AACTATAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.32, C:0.19, G:0.03, T:0.45
Consensus pattern (16 bp):
TCCAAGTTTTTCATAA
Found at i:1044078 original size:55 final size:55
Alignment explanation
Indices: 1043972--1044178 Score: 301
Period size: 55 Copynumber: 3.8 Consensus size: 55
1043962 CTATACGAGA
* * ** *
1043972 ATTCAGCAACCCATGATGAATTCCGTGGGCTAT--ACACATAGTGCATGTACGGTG
1 ATTCATCAACTCATGATGAATTCCGT-GAATATGCACACAAAGTGCATGTACGGTG
* * *
1044026 ATTCATCAACTCATGATAAATTCTGTGAATATGCACACAAATTGCATGTACGGTG
1 ATTCATCAACTCATGATGAATTCCGTGAATATGCACACAAAGTGCATGTACGGTG
* *
1044081 ATTCATCAACTCATGATGAATTCCGTGAATATGCACACAAAGTGCCTGTACGATG
1 ATTCATCAACTCATGATGAATTCCGTGAATATGCACACAAAGTGCATGTACGGTG
1044136 ATTCATCAACTCATGATGAATTCCGTGAATATGCACACAAAGT
1 ATTCATCAACTCATGATGAATTCCGTGAATATGCACACAAAGT
1044179 TCCCGTAGTA
Statistics
Matches: 138, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
53 4 0.03
54 22 0.16
55 112 0.81
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (55 bp):
ATTCATCAACTCATGATGAATTCCGTGAATATGCACACAAAGTGCATGTACGGTG
Found at i:1044645 original size:94 final size:95
Alignment explanation
Indices: 1044547--1044751 Score: 265
Period size: 94 Copynumber: 2.2 Consensus size: 95
1044537 AATACTTATA
*** *
1044547 TACTATGGTATCGATACCCCATTTGGGTATCGATACCAAAAATAGTTTCGATGTTCCTA-GTATA
1 TACTATGGTATCGATACCCCATACCGGTATCGATACCAAAAATAGATTCGATGTTCCTAGGTATA
1044611 GATA-CCCTTACCATGGTATCGATACTACCC
66 GATACCCCTTACCATGGTATCGATACTA-CC
* * * * * *
1044641 TACTATGGTACCGATACCCCCTACCGGTATCGATTCCAAAATTAGATTCGATGTTTCTAGGTATC
1 TACTATGGTATCGATACCCCATACCGGTATCGATACCAAAAATAGATTCGATGTTCCTAGGTATA
*
1044706 GATACCCCTTACTATGGTATCGATACTACC
66 GATACCCCTTACCATGGTATCGATACTACC
1044736 T-C-ATGGGTATCGATAC
1 TACTAT-GGTATCGATAC
1044752 TGATTGAATC
Statistics
Matches: 96, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
93 2 0.02
94 61 0.64
95 11 0.11
96 22 0.23
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (95 bp):
TACTATGGTATCGATACCCCATACCGGTATCGATACCAAAAATAGATTCGATGTTCCTAGGTATA
GATACCCCTTACCATGGTATCGATACTACC
Found at i:1044650 original size:22 final size:23
Alignment explanation
Indices: 1044613--1044657 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
1044603 CTAGTATAGA
*
1044613 TACCCTTACCATGGTATCGATAC
1 TACCCTTACCATGGTACCGATAC
*
1044636 TACCC-TACTATGGTACCGATAC
1 TACCCTTACCATGGTACCGATAC
1044658 CCCCTACCGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.27, C:0.31, G:0.13, T:0.29
Consensus pattern (23 bp):
TACCCTTACCATGGTACCGATAC
Found at i:1059759 original size:27 final size:27
Alignment explanation
Indices: 1059719--1059772 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
1059709 TCAACCTTAT
1059719 ATGGACAGTAAGTTGCT-CACTCATCC
1 ATGGACAGTAAGTTGCTCCACTCATCC
* *
1059745 ATGGATAGTGAAGTTGTTCCACTCATCC
1 ATGGACAGT-AAGTTGCTCCACTCATCC
1059773 TTAACACATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 8 0.33
27 7 0.29
28 9 0.38
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (27 bp):
ATGGACAGTAAGTTGCTCCACTCATCC
Found at i:1066025 original size:20 final size:22
Alignment explanation
Indices: 1065976--1066031 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
1065966 TACCGGAAAG
1065976 GGGTATCGATACC-TCAGTAGA
1 GGGTATCGATACCATCAGTAGA
*
1065997 GTAGTATCGATACCAT-AGTA-A
1 G-GGTATCGATACCATCAGTAGA
1066018 GGGTATCGATACCA
1 GGGTATCGATACCA
1066032 AGCAATATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
20 12 0.39
21 3 0.10
22 15 0.48
23 1 0.03
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (22 bp):
GGGTATCGATACCATCAGTAGA
Found at i:1066475 original size:2 final size:2
Alignment explanation
Indices: 1066419--1066462 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
1066409 AAATACATAC
1066419 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1066461 AT
1 AT
1066463 TACATCGATA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1066558 original size:55 final size:55
Alignment explanation
Indices: 1066491--1066894 Score: 601
Period size: 55 Copynumber: 7.3 Consensus size: 55
1066481 CTATGTGTAC
* * * *
1066491 TACAGACACTTCGTGTGCATATTCATGGAATTAATCATGATTTGATGAATCACCG
1 TACAGGCACTTCGTGTGCATATTCACGGAATTCATCATGAGTTGATGAATCACCG
* *
1066546 TACAGGCACTTCGTGTGCATATTCACGGAATCCATCATGAGTTGATAAATCACCG
1 TACAGGCACTTCGTGTGCATATTCACGGAATTCATCATGAGTTGATGAATCACCG
* * *
1066601 TATAGGCACTTCATGTGCATATTCACGAAATTCATCATGAGTTGATGAATCACCG
1 TACAGGCACTTCGTGTGCATATTCACGGAATTCATCATGAGTTGATGAATCACCG
**
1066656 TACAGGCACTTCGTGTGCATATTCACAAAATTCATCATGAGTTGATGAATCACCG
1 TACAGGCACTTCGTGTGCATATTCACGGAATTCATCATGAGTTGATGAATCACCG
* *
1066711 TACATGCACTTCGTGTGCATATTCACAGAATTCATCATGAGTTGATGAATCACCG
1 TACAGGCACTTCGTGTGCATATTCACGGAATTCATCATGAGTTGATGAATCACCG
* * * *
1066766 TACAAGCACTTCGTATGCATATTCAAGGAATTCATCATGAGTTGATGAATCACTG
1 TACAGGCACTTCGTGTGCATATTCACGGAATTCATCATGAGTTGATGAATCACCG
* * * *
1066821 TACAGGTACTTTGTGTGCATATTCACAGAATTTATCATGAGTTGATGAATCACCG
1 TACAGGCACTTCGTGTGCATATTCACGGAATTCATCATGAGTTGATGAATCACCG
*
1066876 TATAGGTCACTTCGTGTGC
1 TACAGG-CACTTCGTGTGC
1066895 TAAAATGTTA
Statistics
Matches: 316, Mismatches: 32, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
55 306 0.97
56 10 0.03
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (55 bp):
TACAGGCACTTCGTGTGCATATTCACGGAATTCATCATGAGTTGATGAATCACCG
Found at i:1070906 original size:4 final size:4
Alignment explanation
Indices: 1070897--1072860 Score: 3796
Period size: 4 Copynumber: 494.8 Consensus size: 4
1070887 TAAAAATATT
1070897 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1070945 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1070993 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
1071041 ATAC ATAC ATAC ATAC ATAC ATAC AAAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1071089 AT-- ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1071135 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1071183 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1071231 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1071279 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1071327 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1071375 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1071423 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1071471 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1071519 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1071567 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1071615 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
1071663 ATAC ACAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-C ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1071710 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1071758 ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1071804 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1071852 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1071900 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1071948 ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1071994 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1072042 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1072090 ATAC ATAC ATAC ATAC AT-- ATAC ATAC --AC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1072134 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1072182 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1072230 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1072278 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1072326 ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1072372 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1072420 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1072468 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1072516 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1072564 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1072612 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-- ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1072658 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1072706 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1072754 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1072802 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
1072850 ATAT ATAC ATA
1 ATAC ATAC ATA
1072861 TACAGACATA
Statistics
Matches: 1939, Mismatches: 6, Indels: 30
0.98 0.00 0.02
Matches are distributed among these distances:
2 14 0.01
3 3 0.00
4 1922 0.99
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:1073754 original size:16 final size:14
Alignment explanation
Indices: 1073732--1073775 Score: 54
Period size: 16 Copynumber: 3.1 Consensus size: 14
1073722 TTGCTCTCGG
1073732 TTTTTTTTTGTTGT
1 TTTTTTTTTGTTGT
1073746 TAATTTTTTTTGTT-T
1 T--TTTTTTTTGTTGT
*
1073761 TTTTTTTTGGTTGT
1 TTTTTTTTTGTTGT
1073775 T
1 T
1073776 CCATGATAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
13 10 0.38
14 3 0.12
15 2 0.08
16 11 0.42
ACGTcount: A:0.05, C:0.00, G:0.14, T:0.82
Consensus pattern (14 bp):
TTTTTTTTTGTTGT
Found at i:1078047 original size:8 final size:8
Alignment explanation
Indices: 1078034--1078059 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
1078024 GTTCAAGATT
1078034 CACGAGAG
1 CACGAGAG
1078042 CACGAGAG
1 CACGAGAG
1078050 CACGAGAG
1 CACGAGAG
1078058 CA
1 CA
1078060 TTGCAGCGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.38, C:0.27, G:0.35, T:0.00
Consensus pattern (8 bp):
CACGAGAG
Found at i:1079295 original size:2 final size:2
Alignment explanation
Indices: 1079290--1079327 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
1079280 CGTACACATA
1079290 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1079328 GTAGATCTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1079393 original size:5 final size:5
Alignment explanation
Indices: 1079374--1079516 Score: 91
Period size: 5 Copynumber: 28.0 Consensus size: 5
1079364 TGGTATATGG
* * * * *
1079374 TATAT TATAG TATAT TATA- TACAT TATA- TAT-T ATATGAT AATAA TACAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT -TAT-AT TATAT TATAT
* * *
1079423 TATTTT TATAT TATAT TAATAG TATAT TATAT TATAT TAT-T TTTATT
1 TA-TAT TATAT TATAT T-ATAT TATAT TATAT TATAT TATAT TATA-T
1079470 ATATAT TATAT TATAT ATATAT TATA- TAT-T ATATAT TAATAT TATAT
1 -TATAT TATAT TATAT -TATAT TATAT TATAT -TATAT T-ATAT TATAT
1079517 GCCAATGAGT
Statistics
Matches: 107, Mismatches: 16, Indels: 30
0.70 0.10 0.20
Matches are distributed among these distances:
4 12 0.11
5 69 0.64
6 22 0.21
7 4 0.04
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.55
Consensus pattern (5 bp):
TATAT
Found at i:1079405 original size:16 final size:15
Alignment explanation
Indices: 1079384--1079516 Score: 79
Period size: 16 Copynumber: 9.2 Consensus size: 15
1079374 TATATTATAG
1079384 TATATTATATACATTA
1 TATATTATATA-ATTA
*
1079400 TATATTATATGA-TA
1 TATATTATATAATTA
* * * *
1079414 -ATAATACATTATTTT
1 TATATTATA-TAATTA
1079429 TATATTATATTAA-TA
1 TATATTATA-TAATTA
*
1079444 GTATATTATATTA-TA
1 -TATATTATATAATTA
*
1079459 T-TATT-T-TTATTA
1 TATATTATATAATTA
*
1079471 TATATTATATTATATA
1 TATATTATATAAT-TA
1079487 TATATTATAT-ATTA
1 TATATTATATAATTA
1079501 TATATTA-AT-ATTA
1 TATATTATATAATTA
1079514 TAT
1 TAT
1079517 GCCAATGAGT
Statistics
Matches: 97, Mismatches: 11, Indels: 21
0.75 0.09 0.16
Matches are distributed among these distances:
11 3 0.03
12 4 0.04
13 23 0.24
14 14 0.14
15 13 0.13
16 40 0.41
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (15 bp):
TATATTATATAATTA
Found at i:1079408 original size:21 final size:21
Alignment explanation
Indices: 1079379--1079516 Score: 96
Period size: 21 Copynumber: 6.7 Consensus size: 21
1079369 TATGGTATAT
* *
1079379 TATAGTATATTATATACATTA
1 TATATTATATTATATATATTA
*
1079400 TATATTATATGATA-ATA--A
1 TATATTATATTATATATATTA
* *
1079418 TACATTATTTTTATATTATATTA
1 TATATTA-TATTATA-TATATTA
*
1079441 -ATAGTATATTATATTATATTA
1 TATATTATATTATA-TATATTA
*
1079462 T-TTTTAT-TATATATTATATTA
1 TATATTATAT-TATA-TATATTA
1079483 TATA-TATA-T-TATATATTA
1 TATATTATATTATATATATTA
1079501 TATATTAATATTATAT
1 TATATT-ATATTATAT
1079517 GCCAATGAGT
Statistics
Matches: 92, Mismatches: 12, Indels: 25
0.71 0.09 0.19
Matches are distributed among these distances:
18 18 0.20
19 8 0.09
20 7 0.08
21 50 0.54
22 8 0.09
23 1 0.01
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.55
Consensus pattern (21 bp):
TATATTATATTATATATATTA
Found at i:1079753 original size:28 final size:28
Alignment explanation
Indices: 1079722--1079781 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 28
1079712 TTAGTAAATA
*
1079722 TATTATAGTATTAT-TATATTATATTATT
1 TATTATAGTATTATATATATCAT-TTATT
*
1079750 TATTATATTATTATATATATCATTTATT
1 TATTATAGTATTATATATATCATTTATT
1079778 TATT
1 TATT
1079782 TATTCATTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 22 0.76
29 7 0.24
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (28 bp):
TATTATAGTATTATATATATCATTTATT
Found at i:1079755 original size:12 final size:12
Alignment explanation
Indices: 1079730--1079794 Score: 69
Period size: 12 Copynumber: 5.0 Consensus size: 12
1079720 TATATTATAG
1079730 TATTATTATATTA
1 TATTATT-TATTA
1079743 TATTATTTATTA
1 TATTATTTATTA
1079755 TATTATTATATATA
1 TATTATT-TAT-TA
1079769 TCATTTATTTATT-
1 T-A-TTATTTATTA
1079782 TATTCATTTATTA
1 TATT-ATTTATTA
1079795 ATTTTTCAAG
Statistics
Matches: 46, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
11 2 0.04
12 20 0.43
13 11 0.24
14 4 0.09
15 4 0.09
16 5 0.11
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (12 bp):
TATTATTTATTA
Found at i:1080896 original size:12 final size:13
Alignment explanation
Indices: 1080869--1080897 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
1080859 TCTTTAATAC
1080869 TTTTTTAATTTGA
1 TTTTTTAATTTGA
1080882 TTTTTTAATTT-A
1 TTTTTTAATTTGA
1080894 TTTT
1 TTTT
1080898 ATTTGTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.31
13 11 0.69
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (13 bp):
TTTTTTAATTTGA
Found at i:1080918 original size:22 final size:22
Alignment explanation
Indices: 1080871--1080923 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
1080861 TTTAATACTT
* *
1080871 TTTTAATTTGATTTTTTAATTTA
1 TTTT-ATTTGATTTTTCAATTCA
1080894 TTTTATTTG-TTTTTCATATTCA
1 TTTTATTTGATTTTTCA-ATTCA
1080916 TTTTATTT
1 TTTTATTT
1080924 TATCTTATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 6 0.22
22 17 0.63
23 4 0.15
ACGTcount: A:0.21, C:0.04, G:0.04, T:0.72
Consensus pattern (22 bp):
TTTTATTTGATTTTTCAATTCA
Found at i:1089831 original size:22 final size:23
Alignment explanation
Indices: 1089805--1089862 Score: 68
Period size: 22 Copynumber: 2.6 Consensus size: 23
1089795 AATTTATATG
1089805 ATATGTGTTATATGG-AAATGATT
1 ATATGTGTTATATGGAAAATG-TT
*
1089828 -TATGTATTATA-GGAAAATGTT
1 ATATGTGTTATATGGAAAATGTT
*
1089849 ATATGAGTTATATG
1 ATATGTGTTATATG
1089863 AACTTGAGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
21 4 0.14
22 24 0.83
23 1 0.03
ACGTcount: A:0.36, C:0.00, G:0.21, T:0.43
Consensus pattern (23 bp):
ATATGTGTTATATGGAAAATGTT
Found at i:1091759 original size:19 final size:19
Alignment explanation
Indices: 1091731--1091775 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
1091721 AACAAAGAAT
*
1091731 AGTGTTGTACATAAGCAAA
1 AGTGTGGTACATAAGCAAA
1091750 AGTGTGGTACATAAGCAAA
1 AGTGTGGTACATAAGCAAA
1091769 AGTGTGG
1 AGTGTGG
1091776 ATATGATAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.38, C:0.09, G:0.29, T:0.24
Consensus pattern (19 bp):
AGTGTGGTACATAAGCAAA
Found at i:1094348 original size:22 final size:23
Alignment explanation
Indices: 1094322--1094379 Score: 68
Period size: 22 Copynumber: 2.6 Consensus size: 23
1094312 AATTTATATG
1094322 ATATGTGTTATATGG-AAATGATT
1 ATATGTGTTATATGGAAAATG-TT
*
1094345 -TATGTATTATA-GGAAAATGTT
1 ATATGTGTTATATGGAAAATGTT
*
1094366 ATATGAGTTATATG
1 ATATGTGTTATATG
1094380 AACTTGAGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
21 4 0.14
22 24 0.83
23 1 0.03
ACGTcount: A:0.36, C:0.00, G:0.21, T:0.43
Consensus pattern (23 bp):
ATATGTGTTATATGGAAAATGTT
Found at i:1094650 original size:17 final size:18
Alignment explanation
Indices: 1094624--1094658 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
1094614 TGTGAAACTG
*
1094624 AACTAGGTAAATATATGA
1 AACTAGGTAAATAAATGA
1094642 AACTA-GTAAATAAATGA
1 AACTAGGTAAATAAATGA
1094659 TGGTAGATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.54, C:0.06, G:0.14, T:0.26
Consensus pattern (18 bp):
AACTAGGTAAATAAATGA
Found at i:1094702 original size:2 final size:2
Alignment explanation
Indices: 1094695--1094719 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1094685 TGGAGTTATG
1094695 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
1094720 AAGACTATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1095138 original size:23 final size:24
Alignment explanation
Indices: 1095097--1095149 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
1095087 TCCTTCGGGA
*
1095097 CATAGTGGTCATCCTGGAC-ATTT
1 CATAGTGGTCATCCGGGACAATTT
* *
1095120 CATAGTGGTCCTTCGGGACAAATTT
1 CATAGTGGTCATCCGGGAC-AATTT
1095145 CATAG
1 CATAG
1095150 CCCCTAGTGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 16 0.64
25 9 0.36
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (24 bp):
CATAGTGGTCATCCGGGACAATTT
Found at i:1104244 original size:170 final size:170
Alignment explanation
Indices: 1103954--1104309 Score: 529
Period size: 170 Copynumber: 2.1 Consensus size: 170
1103944 TGAATGAGTC
* *
1103954 ACCTATGATTTCAACTTCACGACGAAGGATATAATGCTCAATAGATTGACTCAACTTCATAGCAA
1 ACCTATGATTTCAACTTCACGACGAAAGATATAATGCTCAATAGATCGACTCAACTTCATAGCAA
* * *
1104019 AGGAGTAATCTACAACATAGCTTAACTCAACAATGAGGAGCTATTTTCCAGTTCAGATTTCGAGC
66 AGGAGTAATCTACAACATAGCTTAACTCAAAAACGAAGAGCTATTTTCCAGTTCAGATTTCGAGC
*
1104084 A-GATTTCAACTTCACGACGAATGATATCAAGCTCAAATCA
131 AGGATTTCAACTTCACGACGAAGGATATCAA-CTCAAATCA
* * **
1104124 ACCTACGATTTCAACTTCACGATGAAAGATATCGTGC-CTAATAGATCGACTCAACTTCATAGCA
1 ACCTATGATTTCAACTTCACGACGAAAGATATAATGCTC-AATAGATCGACTCAACTTCATAGCA
* * * *
1104188 AAGGAGTCATCTACTACATAGCTTAACTTAAAAACGAAGAGCTATTTTCTAGTTCAGATTTCGAG
65 AAGGAGTAATCTACAACATAGCTTAACTCAAAAACGAAGAGCTATTTTCCAGTTCAGATTTCGAG
* *
1104253 TAGGATTTCAACTTCACGATGAAGGATATCAACTCAAATCA
130 CAGGATTTCAACTTCACGACGAAGGATATCAACTCAAATCA
1104294 ACC-ATGATTTCAACTT
1 ACCTATGATTTCAACTT
1104310 TATGGCGAAG
Statistics
Matches: 167, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
169 13 0.08
170 127 0.76
171 27 0.16
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (170 bp):
ACCTATGATTTCAACTTCACGACGAAAGATATAATGCTCAATAGATCGACTCAACTTCATAGCAA
AGGAGTAATCTACAACATAGCTTAACTCAAAAACGAAGAGCTATTTTCCAGTTCAGATTTCGAGC
AGGATTTCAACTTCACGACGAAGGATATCAACTCAAATCA
Found at i:1104625 original size:5 final size:5
Alignment explanation
Indices: 1104586--1104691 Score: 87
Period size: 5 Copynumber: 21.0 Consensus size: 5
1104576 TAGTGTAGTA
* * *
1104586 TATAG TATAT TGTA- TATAT TACATAT TAGTAT TATAT TATAG TATTAT
1 TATAT TATAT TATAT TATAT T--ATAT TA-TAT TATAT TATAT TA-TAT
1104634 TATAT TATAT TATTAT T-TAT TATAT TATTAT T-TAT TATA- T-TAT TATAT
1 TATAT TATAT TA-TAT TATAT TATAT TA-TAT TATAT TATAT TATAT TATAT
*
1104682 TATTT TATAT
1 TATAT TATAT
1104692 ATTATTTATC
Statistics
Matches: 83, Mismatches: 7, Indels: 22
0.74 0.06 0.20
Matches are distributed among these distances:
3 2 0.02
4 13 0.16
5 46 0.55
6 17 0.20
7 5 0.06
ACGTcount: A:0.36, C:0.01, G:0.04, T:0.59
Consensus pattern (5 bp):
TATAT
Found at i:1104633 original size:8 final size:8
Alignment explanation
Indices: 1104620--1104709 Score: 100
Period size: 8 Copynumber: 11.5 Consensus size: 8
1104610 ATTAGTATTA
*
1104620 TATTATAG
1 TATTATAT
1104628 TATTAT-T
1 TATTATAT
1104635 ATATTATAT
1 -TATTATAT
1104644 TATTAT-T
1 TATTATAT
1104651 TATTATAT
1 TATTATAT
1104659 TATTAT-T
1 TATTATAT
1104666 TATTATAT
1 TATTATAT
1104674 TATTATAT
1 TATTATAT
*
1104682 TATTTTAT
1 TATTATAT
1104690 ATATTAT-T
1 -TATTATAT
1104698 TATCTAT-T
1 TAT-TATAT
1104706 TATT
1 TATT
1104710 CATTTATTTT
Statistics
Matches: 73, Mismatches: 3, Indels: 13
0.82 0.03 0.15
Matches are distributed among these distances:
7 18 0.25
8 49 0.67
9 6 0.08
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (8 bp):
TATTATAT
Found at i:1104636 original size:3 final size:3
Alignment explanation
Indices: 1104609--1104697 Score: 77
Period size: 3 Copynumber: 31.3 Consensus size: 3
1104599 ATATATTACA
* *
1104609 TAT TAG TAT TA- TAT TA- TAG TAT TAT TA- TAT TA- TAT TAT TATT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
1104651 TAT TA- TAT TAT TATT TAT TA- TAT TAT TA- TAT TAT T-T TAT ATAT
1 TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
1104694 TAT T
1 TAT T
1104698 TATCTATTTA
Statistics
Matches: 72, Mismatches: 3, Indels: 22
0.74 0.03 0.23
Matches are distributed among these distances:
2 16 0.22
3 47 0.65
4 9 0.12
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:1104718 original size:12 final size:11
Alignment explanation
Indices: 1104630--1104717 Score: 79
Period size: 12 Copynumber: 7.5 Consensus size: 11
1104620 TATTATAGTA
1104630 TTATTATATTAT
1 TTATTAT-TTAT
1104642 ATTATTATTTAT
1 -TTATTATTTAT
1104654 TATATTA-TTAT
1 T-TATTATTTAT
1104665 TTATTATATTAT
1 TTATTAT-TTAT
1104677 TATATTATTTTAT
1 T-TATTA-TTTAT
*
1104690 ATATTATTTAT
1 TTATTATTTAT
* *
1104701 CTATTTATTCAT
1 TTA-TTATTTAT
1104713 TTATT
1 TTATT
1104718 TTTTTTTTCA
Statistics
Matches: 65, Mismatches: 4, Indels: 14
0.78 0.05 0.17
Matches are distributed among these distances:
10 5 0.08
11 15 0.23
12 28 0.43
13 16 0.25
14 1 0.02
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (11 bp):
TTATTATTTAT
Found at i:1106274 original size:2 final size:2
Alignment explanation
Indices: 1106267--1106319 Score: 99
Period size: 2 Copynumber: 27.0 Consensus size: 2
1106257 ATTATGACAC
1106267 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1106309 TA TA TA T- TA TA
1 TA TA TA TA TA TA
1106320 CTATCATGTA
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 49 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1113739 original size:2 final size:2
Alignment explanation
Indices: 1113728--1113768 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
1113718 TCATTGAACT
1113728 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1113769 GTTATTGTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:1120698 original size:19 final size:19
Alignment explanation
Indices: 1120674--1120718 Score: 90
Period size: 19 Copynumber: 2.4 Consensus size: 19
1120664 TAATATCGTT
1120674 GATTTGAGGCAAAAATTGA
1 GATTTGAGGCAAAAATTGA
1120693 GATTTGAGGCAAAAATTGA
1 GATTTGAGGCAAAAATTGA
1120712 GATTTGA
1 GATTTGA
1120719 AAAAGTTGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.40, C:0.04, G:0.27, T:0.29
Consensus pattern (19 bp):
GATTTGAGGCAAAAATTGA
Found at i:1120861 original size:22 final size:24
Alignment explanation
Indices: 1120810--1120862 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 24
1120800 GATTCCCCTG
1120810 TGGGGGGGAATCGGTTCCCCTTCA
1 TGGGGGGGAATCGGTTCCCCTTCA
**
1120834 -AAGGGGGAATCGGTT-CCC-TCA
1 TGGGGGGGAATCGGTTCCCCTTCA
1120855 TGGGGGGG
1 TGGGGGGG
1120863 TCGATTCCCT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
21 3 0.12
22 8 0.33
23 13 0.54
ACGTcount: A:0.15, C:0.21, G:0.43, T:0.21
Consensus pattern (24 bp):
TGGGGGGGAATCGGTTCCCCTTCA
Found at i:1135503 original size:30 final size:31
Alignment explanation
Indices: 1135445--1135504 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
1135435 AATAATCCAC
* *
1135445 AACTTTTCTAAAATTATCAGTTTGGTCCCCT
1 AACTTTTCAAAAATTATCAGTATGGTCCCCT
1135476 AACTTTTCAAAAATTA-CA-TAATGGTCCCC
1 AACTTTTCAAAAATTATCAGT-ATGGTCCCC
1135505 AAATTTTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 1 0.04
30 10 0.38
31 15 0.58
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.37
Consensus pattern (31 bp):
AACTTTTCAAAAATTATCAGTATGGTCCCCT
Found at i:1147283 original size:28 final size:28
Alignment explanation
Indices: 1147245--1147303 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
1147235 CTACACGCAT
*
1147245 ATGGGCAGAATTTGAGGGTGAGTGGCGC
1 ATGGGCAGAATTTGAGGGTGAGTGGAGC
*
1147273 ATGGGCCGAATTTGAGGGTGAGTGGAGC
1 ATGGGCAGAATTTGAGGGTGAGTGGAGC
1147301 ATG
1 ATG
1147304 AGTGGAACTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.22, C:0.10, G:0.46, T:0.22
Consensus pattern (28 bp):
ATGGGCAGAATTTGAGGGTGAGTGGAGC
Found at i:1147315 original size:28 final size:28
Alignment explanation
Indices: 1147256--1147315 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
1147246 TGGGCAGAAT
* * *
1147256 TTGAGGGTGAGTGGCGCATGGGCCGAAT
1 TTGAGGGTGAGTGGAGCATGAGCCGAAC
**
1147284 TTGAGGGTGAGTGGAGCATGAGTGGAAC
1 TTGAGGGTGAGTGGAGCATGAGCCGAAC
1147312 TTGA
1 TTGA
1147316 TATGTATGAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.22, C:0.10, G:0.45, T:0.23
Consensus pattern (28 bp):
TTGAGGGTGAGTGGAGCATGAGCCGAAC
Found at i:1147757 original size:3 final size:3
Alignment explanation
Indices: 1147751--1147783 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
1147741 ACATTATTAT
1147751 TAA TAA TAA -AA TAA T-A TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1147784 TCCCGGACAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 4 0.14
3 24 0.86
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:1148030 original size:55 final size:55
Alignment explanation
Indices: 1147970--1148294 Score: 436
Period size: 55 Copynumber: 5.9 Consensus size: 55
1147960 AACATGTTAA
* * * * *
1147970 CTCCCTATTCCTTCAGAGAGTATGAGAC-CGGAATAATCTTCAATAAACGTATCTA
1 CTCCCTATTCCTTCAGAGAGTATGAGACTC-GAACAATCTTCAACAATCGTGTCTG
*
1148025 CTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTG
1 CTCCCTATTCCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTG
* * * * *
1148080 CTCCCTATTTCTTCAGAGAGTATAAGATTTGAACAATCTTCAACAATTGTGTCTG
1 CTCCCTATTCCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTG
* * *
1148135 CTCCCTATTCCTTCAGAGAGTATAAGACTTGAACAATCTTCAAACAATCGTGTCCG
1 CTCCCTATTCCTTCAGAGAGTATGAGACTCGAACAATCTTC-AACAATCGTGTCTG
* * * * *
1148191 CTCCCTATTCCTTTAGGGAGTATGAAACTCGAACAATCTTTAATAATCGTGTCTG
1 CTCCCTATTCCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTG
* *
1148246 CTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACCATCG
1 CTCCCTATTCCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCG
1148295 AGTTCGCTTC
Statistics
Matches: 239, Mismatches: 29, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
55 191 0.80
56 48 0.20
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.31
Consensus pattern (55 bp):
CTCCCTATTCCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTG
Found at i:1148243 original size:166 final size:165
Alignment explanation
Indices: 1147970--1148289 Score: 471
Period size: 166 Copynumber: 1.9 Consensus size: 165
1147960 AACATGTTAA
* * * *
1147970 CTCCCTATTCCTTCAGAGAGTATGAGACCGGAATAATCTTCAATAAACGTATCTACTCCCTATTT
1 CTCCCTATTCCTTCAGAGAGTATAAGACCGGAACAATCTTCAATAAACGTATCCACTCCCTATTC
*
1148035 CTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAG
66 CTTCAGAGAGTATGAAACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAG
* *
1148100 TATAAGATTTGAACAATCTTCAACAATTGTGTCTG
131 TATAAGACTCGAACAATCTTCAACAATTGTGTCTG
** * *
1148135 CTCCCTATTCCTTCAGAGAGTATAAGACTTGAACAATCTTCAA-ACAATCGTGTCCGCTCCCTAT
1 CTCCCTATTCCTTCAGAGAGTATAAGACCGGAACAATCTTCAATA-AA-CGTATCCACTCCCTAT
* * * *
1148199 TCCTTTAGGGAGTATGAAACTCGAACAATCTTTAATAATCGTGTCTGCTCCCTATTTCTTCAGAG
64 TCCTTCAGAGAGTATGAAACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAG
*
1148264 AGTATGAGACTCGAACAATCTTCAAC
129 AGTATAAGACTCGAACAATCTTCAAC
1148290 CATCGAGTTC
Statistics
Matches: 137, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
164 1 0.01
165 41 0.30
166 95 0.69
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (165 bp):
CTCCCTATTCCTTCAGAGAGTATAAGACCGGAACAATCTTCAATAAACGTATCCACTCCCTATTC
CTTCAGAGAGTATGAAACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAG
TATAAGACTCGAACAATCTTCAACAATTGTGTCTG
Found at i:1148333 original size:54 final size:51
Alignment explanation
Indices: 1148202--1149422 Score: 1029
Period size: 54 Copynumber: 23.6 Consensus size: 51
1148192 TCCCTATTCC
* * *
1148202 TTTAGGGAGTAT-GAAACTCGAACAATCTTTAATAATCGTG-TCTGCTCCCTATTT
1 TTTAGGGAGTATAG-AACTCGAACAATC-TTCA-AA-CGGGTTC-GCTCCCTCTTT
* * * *
1148256 CTTCAGAGAGTAT-GAGACTCGAACAATCTTCAACCATCGAGTTCGCTTCCTCTTT
1 -TTTAGGGAGTATAGA-ACTCGAACAATCTTCAA--A-CGGGTTCGCTCCCTCTTT
*
1148311 TTTAGGGAGTATAGAACTCGAAC-TTCTTCTGCAAACGGGTTCGCTCCCTCTTT
1 TTTAGGGAGTATAGAACTCGAACAATC-T-T-CAAACGGGTTCGCTCCCTCTTT
* * *
1148364 ATTAGGGAGTATACAACTCGAA-AATCTTCAAACGGGTTCGTTCCCTCTTT
1 TTTAGGGAGTATAGAACTCGAACAATCTTCAAACGGGTTCGCTCCCTCTTT
* * *
1148414 CTCTAGGGAGTATAGAACTCGGACATCTTCTTCAAACGGGTTCGCTCCCTCTTT
1 -TTTAGGGAGTATAGAACTCGAACA--ATCTTCAAACGGGTTCGCTCCCTCTTT
* * *
1148468 CTTCAGGAAGTATAGAACTCGAACAATCTTC-AAC-GGTTCGCTCCCTC-TC
1 -TTTAGGGAGTATAGAACTCGAACAATCTTCAAACGGGTTCGCTCCCTCTTT
* ** *
1148517 TTTAGGGAGTATGGAACTCGAACATCATCTTCTTACGGGTTCACTCCCTCTTT
1 TTTAGGGAGTATAGAACTCGAACA--ATCTTCAAACGGGTTCGCTCCCTCTTT
* * *
1148570 CTCTAGGGAGTATAGAACTCGGACATAT-TCTCAAATGGGTTCGCT-CCTC--T
1 -TTTAGGGAGTATAGAACTCGAACA-ATCT-TCAAACGGGTTCGCTCCCTCTTT
* * * *
1148620 TCTAGGGAGTATAGAACTTGGACATCTTCTTCAAACGGGTTCGCTCCCTCTTT
1 TTTAGGGAGTATAGAACTCGAACA--ATCTTCAAACGGGTTCGCTCCCTCTTT
* * * *
1148673 CTTCAGGAAGTATAGAACTCGAACAATCTTTAAACGGGTTCGCTCCCTC-TC
1 -TTTAGGGAGTATAGAACTCGAACAATCTTCAAACGGGTTCGCTCCCTCTTT
* * ** *
1148724 TTTAGGGAGTATGGAACTCGAACATCTTCTTCTTACGGGTTCGCTCCCTCTTC
1 TTTAGGGAGTATAGAACTCGAACA--ATCTTCAAACGGGTTCGCTCCCTCTTT
* * *
1148777 TCTAGGAAGTATAGAACTCGAACAATCTTCAAACGGGTTCGCT-CCTC-TC
1 TTTAGGGAGTATAGAACTCGAACAATCTTCAAACGGGTTCGCTCCCTCTTT
* * **
1148826 TTTAGGGAGTATGGAACTCGAACATCTTCTTCTTACGGGTTCGCTCCCTCTTT
1 TTTAGGGAGTATAGAACTCGAACA--ATCTTCAAACGGGTTCGCTCCCTCTTT
* * *
1148879 CTCTAGGGAGTATAGAACTCGGACATATTCTTCAAATGGGTTCGCTCCCTCTTT
1 -TTTAGGGAGTATAGAACTCGAACA-A-TCTTCAAACGGGTTCGCTCCCTCTTT
* * * * *
1148933 CTCTAGGGAGTATAGAACTTGGACATCTTCTTCAAACGGGTTCGCTCCCTCTTC
1 -TTTAGGGAGTATAGAACTCGAACA--ATCTTCAAACGGGTTCGCTCCCTCTTT
* * * *
1148987 TTCAGGAATTATAGAACTCGAATAATCTTCAAACGGGTTCGCTCCCTC---
1 TTTAGGGAGTATAGAACTCGAACAATCTTCAAACGGGTTCGCTCCCTCTTT
* * * *
1149035 TTTAGGGAGTATGGAACTC-AGACATCTTCTTCAAATGGGTTCGCTCCCTCTTC
1 TTTAGGGAGTATAGAACTCGA-ACA--ATCTTCAAACGGGTTCGCTCCCTCTTT
* * * * * *
1149088 TTCAGGAAGTATAGAACTCGAATAAGCTTCAAACGGGTTCACTCCCTC-TC
1 TTTAGGGAGTATAGAACTCGAACAATCTTCAAACGGGTTCGCTCCCTCTTT
* * * * **
1149138 TTTAGGGAGTATGGAATTCAAACATCTTCTTCTTACGGGTTCGCTCCCTCTTT
1 TTTAGGGAGTATAGAACTCGAACA--ATCTTCAAACGGGTTCGCTCCCTCTTT
* * * *
1149191 CTCTAGGAAGTATAGAACTCGAACAATCTTCAAACGGGTTCGTTCCCTC-TC
1 -TTTAGGGAGTATAGAACTCGAACAATCTTCAAACGGGTTCGCTCCCTCTTT
* * *
1149242 TTTAGGGAGTATGGAACTCGGACATCTTCTTCAAAC-GGTTCG--CCCTCTTT
1 TTTAGGGAGTATAGAACTCGAACA--ATCTTCAAACGGGTTCGCTCCCTCTTT
* * * * * *
1149292 CTTCAAGAAGTATAGAACTCGAATAATCTTCGAACGGGTTTGCTCCCTCTTT
1 -TTTAGGGAGTATAGAACTCGAACAATCTTCAAACGGGTTCGCTCCCTCTTT
* * * *
1149344 CTCTAGGGAGTATAGAACTCGGAC-ATCTTCTAACGGGTTCGCTCCCTC-TA
1 -TTTAGGGAGTATAGAACTCGAACAATCTTCAAACGGGTTCGCTCCCTCTTT
* *
1149394 TTTAGGGAGTATGGAACTCGGAC-ATCTTC
1 TTTAGGGAGTATAGAACTCGAACAATCTTC
1149423 TTCTGCTTCA
Statistics
Matches: 955, Mismatches: 157, Indels: 114
0.78 0.13 0.09
Matches are distributed among these distances:
47 1 0.00
48 38 0.04
49 87 0.09
50 150 0.16
51 152 0.16
52 144 0.15
53 116 0.12
54 222 0.23
55 40 0.04
56 5 0.01
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (51 bp):
TTTAGGGAGTATAGAACTCGAACAATCTTCAAACGGGTTCGCTCCCTCTTT
Found at i:1148660 original size:103 final size:104
Alignment explanation
Indices: 1148245--1149418 Score: 1325
Period size: 103 Copynumber: 11.3 Consensus size: 104
1148235 AATCGTGTCT
* * * *
1148245 GCTCCCTATTTCTTCA-GAGAGTAT-GAGACTCGAACA-ATCTTCAACCATCGAGTTCGCTTCCT
1 GCTCCCTCTTTCTT-AGGA-AGTATAGA-ACTCGGACATATCTTCAA--A-CGGGTTCGCTCCCT
* * * * *
1148307 CTTTTTTAGGGAGTATAGAACTCGAACTTCTTCTGCAAACGGGTTC
60 C-TCTTTAGGGAGTATGGAACTCGGACATCTTCTTCAAACGGGTTC
* * * * *
1148353 GCTCCCTCTTTATTAGGGAGTATACAACTC-GA-AAATCTTCAAACGGGTTCGTTCCCTCTTTCT
1 GCTCCCTCTTTCTTAGGAAGTATAGAACTCGGACATATCTTCAAACGGGTTCGCTCCCTC--TCT
* *
1148416 CTAGGGAGTATAGAACTCGGACATCTTCTTCAAACGGGTTC
64 TTAGGGAGTATGGAACTCGGACATCTTCTTCAAACGGGTTC
*
1148457 GCTCCCTCTTTCTTCAGGAAGTATAGAACTCGAACA-ATCTTC-AAC-GGTTCGCTCCCTCTCTT
1 GCTCCCTCTTTCTT-AGGAAGTATAGAACTCGGACATATCTTCAAACGGGTTCGCTCCCTCTCTT
* * **
1148519 TAGGGAGTATGGAACTCGAACATCATCTTCTTACGGGTTC
65 TAGGGAGTATGGAACTCGGACATCTTCTTCAAACGGGTTC
* * *
1148559 ACTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACATAT-TCTCAAATGGGTTCGCT-CCTCT-T
1 GCTCCCTCTTTCT-TAGGAAGTATAGAACTCGGACATATCT-TCAAACGGGTTCGCTCCCTCTCT
* * *
1148621 CTAGGGAGTATAGAACTTGGACATCTTCTTCAAACGGGTTC
64 TTAGGGAGTATGGAACTCGGACATCTTCTTCAAACGGGTTC
* *
1148662 GCTCCCTCTTTCTTCAGGAAGTATAGAACTCGAACA-ATCTTTAAACGGGTTCGCTCCCTCTCTT
1 GCTCCCTCTTTCTT-AGGAAGTATAGAACTCGGACATATCTTCAAACGGGTTCGCTCCCTCTCTT
* **
1148726 TAGGGAGTATGGAACTCGAACATCTTCTTCTTACGGGTTC
65 TAGGGAGTATGGAACTCGGACATCTTCTTCAAACGGGTTC
*
1148766 GCTCCCTC-TTCTCTAGGAAGTATAGAACTCGAACA-ATCTTCAAACGGGTTCGCT-CCTCTCTT
1 GCTCCCTCTTTCT-TAGGAAGTATAGAACTCGGACATATCTTCAAACGGGTTCGCTCCCTCTCTT
* **
1148828 TAGGGAGTATGGAACTCGAACATCTTCTTCTTACGGGTTC
65 TAGGGAGTATGGAACTCGGACATCTTCTTCAAACGGGTTC
* *
1148868 GCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACATATTCTTCAAATGGGTTCGCTCCCTCTTT
1 GCTCCCTCTTTCT-TAGGAAGTATAGAACTCGGACATA-TCTTCAAACGGGTTCGCTCCCTC--T
* * *
1148933 CTCTAGGGAGTATAGAACTTGGACATCTTCTTCAAACGGGTTC
62 CTTTAGGGAGTATGGAACTCGGACATCTTCTTCAAACGGGTTC
*
1148976 GCTCCCTC-TTCTTCAGGAATTATAGAACTC-GA-ATAATCTTCAAACGGGTTCGCT-CC-CTCT
1 GCTCCCTCTTTCTT-AGGAAGTATAGAACTCGGACAT-ATCTTCAAACGGGTTCGCTCCCTCTCT
* *
1149036 TTAGGGAGTATGGAACTCAGACATCTTCTTCAAATGGGTTC
64 TTAGGGAGTATGGAACTCGGACATCTTCTTCAAACGGGTTC
* *
1149077 GCTCCCTC-TTCTTCAGGAAGTATAGAACTC-GA-ATAAGCTTCAAACGGGTTCACTCCCTCTCT
1 GCTCCCTCTTTCTT-AGGAAGTATAGAACTCGGACAT-ATCTTCAAACGGGTTCGCTCCCTCTCT
* ** **
1149139 TTAGGGAGTATGGAATTCAAACATCTTCTTCTTACGGGTTC
64 TTAGGGAGTATGGAACTCGGACATCTTCTTCAAACGGGTTC
* *
1149180 GCTCCCTCTTTCTCTAGGAAGTATAGAACTCGAACA-ATCTTCAAACGGGTTCGTTCCCTCTCTT
1 GCTCCCTCTTTCT-TAGGAAGTATAGAACTCGGACATATCTTCAAACGGGTTCGCTCCCTCTCTT
1149244 TAGGGAGTATGGAACTCGGACATCTTCTTCAAAC-GGTTC
65 TAGGGAGTATGGAACTCGGACATCTTCTTCAAACGGGTTC
* * *
1149283 G--CCCTCTTTCTTCAAGAAGTATAGAACTC-GA-ATAATCTTCGAACGGGTTTGCTCCCTCTTT
1 GCTCCCTCTTTCTT-AGGAAGTATAGAACTCGGACAT-ATCTTCAAACGGGTTCGCTCCCTC--T
* *
1149344 CTCTAGGGAGTATAGAACTCGGACATCTTC-T--AACGGGTTC
62 CTTTAGGGAGTATGGAACTCGGACATCTTCTTCAAACGGGTTC
* * *
1149384 GCTCCCTCTAT-TTAGGGAGTATGGAACTCGGACAT
1 GCTCCCTCTTTCTTAGGAAGTATAGAACTCGGACAT
1149419 CTTCTTCTGC
Statistics
Matches: 933, Mismatches: 92, Indels: 87
0.84 0.08 0.08
Matches are distributed among these distances:
99 1 0.00
100 5 0.01
101 155 0.17
102 149 0.16
103 250 0.27
104 195 0.21
105 64 0.07
106 25 0.03
107 29 0.03
108 60 0.06
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (104 bp):
GCTCCCTCTTTCTTAGGAAGTATAGAACTCGGACATATCTTCAAACGGGTTCGCTCCCTCTCTTT
AGGGAGTATGGAACTCGGACATCTTCTTCAAACGGGTTC
Done.