genome.fa.s8032.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008032.1 Hibiscus syriacus cultivar Beakdansim tig00110514_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1200719

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 598 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4604--4650	19	2.4	20	82	3	60	40	0	4	55	1.19
14417--14450	16	2.1	16	89	10	52	67	2	5	23	1.26
21925--22056	71	1.9	71	87	3	194	27	17	19	35	1.94
36682--36714	15	2.1	16	88	5	50	6	21	18	54	1.64
39802--39880	39	2.0	39	92	0	131	35	1	12	50	1.48
48042--48074	13	2.5	14	85	14	52	63	0	18	18	1.31
48677--48715	20	2.0	20	89	0	60	33	10	23	33	1.88
49544--49582	21	1.9	20	89	5	60	12	0	20	66	1.24
56589--56722	38	3.6	38	85	5	173	44	4	5	46	1.46
64788--64831	23	1.9	23	81	9	54	72	15	2	9	1.19
65985--66038	26	2.1	26	82	6	65	70	7	16	5	1.30
66717--67041	54	6.0	54	86	3	424	26	19	20	33	1.97
68456--68665	117	1.8	116	88	1	321	24	22	15	38	1.92
68581--68644	17	3.3	19	66	22	51	23	18	14	43	1.86
68714--69510	91	8.8	91	87	0	1071	25	20	15	38	1.92
69457--69516	17	3.2	17	68	28	50	23	21	10	45	1.82
69465--69530	23	3.2	23	66	28	65	24	21	15	39	1.91
69454--69546	39	2.4	39	96	0	168	21	21	12	44	1.86
69364--69640	130	2.1	129	86	2	376	23	21	15	39	1.92
69493--69734	91	2.7	92	89	1	362	23	21	14	39	1.91
70605--70718	42	2.7	42	82	4	124	31	21	18	28	1.97
70477--71147	274	2.4	273	85	4	866	37	19	14	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73165--73261	9	10.4	9	76	18	92	1	18	1	79	0.85
73207--73261	17	3.2	17	80	14	60	0	21	0	78	0.76
73165--73285	57	2.1	59	84	7	158	3	19	0	76	0.97
73207--73272	26	2.5	26	88	9	107	1	22	0	75	0.88
73165--73263	10	10.5	10	78	15	88	1	19	1	78	0.86
73213--73286	26	2.9	26	86	9	82	4	21	0	74	0.98
73947--74228	55	5.1	55	84	2	343	29	18	17	34	1.94
74539--74592	22	2.5	22	88	5	76	33	25	14	25	1.95
82426--82464	21	1.9	20	84	5	51	66	20	2	10	1.33
83295--83332	20	1.9	20	88	0	58	28	23	10	36	1.88
85616--85702	29	3.0	29	78	8	81	37	13	24	24	1.91
85656--85823	29	5.9	28	76	8	106	40	16	17	25	1.90
85658--85858	58	3.5	57	75	8	183	41	16	16	24	1.89
85773--85839	29	2.3	29	84	0	80	43	14	17	23	1.87
102570--102611	19	2.2	19	95	0	75	30	4	19	45	1.71
136492--136531	19	2.1	19	85	0	53	70	5	7	17	1.30
138740--138775	11	3.3	11	92	0	63	19	8	0	72	1.10
145407--145799	200	2.0	196	96	3	734	27	21	23	26	1.99
150885--150920	13	2.8	13	95	0	63	13	22	27	36	1.92
160904--160958	15	3.7	15	83	9	51	29	18	14	38	1.90
160932--160965	15	2.3	15	89	0	50	29	20	11	38	1.88
161472--161514	21	2.0	23	86	9	63	32	25	9	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
162053--162116	3	21.3	3	100	0	128	67	0	32	0	0.91
165383--165455	14	5.7	13	71	24	57	54	1	1	42	1.17
165398--165446	24	2.3	22	80	19	59	53	0	2	44	1.12
165406--165450	24	1.9	24	95	4	83	53	0	2	44	1.13
165383--165455	13	5.8	12	72	22	60	54	1	1	42	1.17
168041--169057	508	2.0	509	99	0	2018	24	15	23	36	1.94
179015--179423	178	2.3	178	78	7	418	41	10	11	37	1.75
180112--180177	28	2.4	28	94	2	116	30	13	12	43	1.80
180420--181083	329	2.0	333	98	1	1282	39	10	11	39	1.75
182469--182523	18	2.8	21	78	18	73	45	0	0	54	0.99
183140--183177	19	2.0	19	89	0	58	63	2	0	34	1.09
183266--183300	3	11.7	3	93	0	61	71	0	0	28	0.86
183269--183347	9	9.0	9	75	10	65	72	3	1	22	1.08
184751--184788	13	2.9	13	88	11	60	55	5	0	39	1.23
185546--186667	106	10.6	106	92	1	1745	23	18	24	33	1.96
190376--190413	19	2.0	19	89	0	58	63	2	0	34	1.09
190501--190569	3	23.7	3	91	5	115	71	0	0	28	0.87
190499--190624	9	14.2	9	78	9	98	72	3	0	23	1.05
192098--192130	16	2.1	16	94	0	57	33	0	9	57	1.30
195081--195172	42	2.1	45	82	6	109	28	8	21	41	1.83
200558--201190	45	14.0	45	82	1	640	21	16	19	42	1.90
201988--202392	133	3.1	133	82	3	379	31	17	19	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
202107--202465	133	2.7	133	80	6	345	30	19	18	31	1.96
206204--206233	13	2.2	13	94	5	51	66	0	3	30	1.07
206261--206377	8	14.0	8	71	18	87	59	0	3	36	1.14
206263--206377	25	4.6	25	67	27	75	60	0	3	36	1.14
206257--206375	30	3.9	29	71	25	95	60	0	3	36	1.13
207523--208263	135	5.5	131	72	11	366	32	14	17	36	1.89
208005--208256	134	1.9	133	79	4	283	32	11	16	40	1.83
235405--235444	2	20.0	2	94	0	71	47	0	2	50	1.14
248076--248131	24	2.3	24	100	0	112	28	17	16	37	1.91
248354--248419	30	2.2	30	86	0	87	10	30	24	34	1.89
254731--254769	17	2.2	18	86	4	53	23	10	0	66	1.22
255824--255984	64	2.5	65	79	11	172	31	18	25	24	1.97
255992--256029	20	1.9	20	94	0	67	31	21	21	26	1.98
256629--256673	21	2.1	21	83	4	54	46	6	17	28	1.73
256706--256757	25	2.0	27	82	14	65	46	1	23	28	1.63
257741--257834	27	3.4	27	88	1	125	15	19	1	63	1.36
268542--268600	13	4.7	12	74	21	50	20	16	1	61	1.44
272584--272637	17	2.9	20	78	13	53	27	11	3	57	1.50
273476--273583	44	2.5	44	80	4	128	31	24	17	26	1.97
273781--273900	24	5.2	23	72	15	88	40	0	9	49	1.40
273816--273965	47	3.2	47	74	18	134	42	0	10	47	1.42
274063--274106	3	15.7	3	81	13	58	27	2	0	70	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
275122--275172	3	17.0	3	83	0	66	35	1	0	62	1.06
277113--277158	20	2.3	20	85	3	58	21	0	6	71	1.08
277295--277338	23	2.0	22	90	4	70	22	25	0	52	1.48
277297--277345	23	2.2	23	85	3	64	26	22	4	46	1.69
288288--288349	15	4.3	15	71	19	51	75	1	16	6	1.08
288288--288366	7	10.7	7	74	15	52	75	2	16	5	1.08
289709--290239	132	4.0	132	85	0	668	29	21	18	30	1.97
290464--290493	13	2.2	14	94	5	53	13	3	0	83	0.77
290452--290493	21	2.0	21	86	9	59	19	2	0	78	0.86
290938--290977	17	2.3	17	91	4	62	80	0	7	12	0.91
291678--291706	13	2.2	13	100	0	58	13	24	6	55	1.63
295240--295288	24	2.0	25	84	4	64	32	10	4	53	1.54
298211--298254	17	2.6	17	88	0	70	20	15	15	47	1.82
303569--303766	88	2.2	87	78	7	202	37	20	16	25	1.93
303778--303899	44	2.8	44	81	2	120	32	22	20	23	1.98
305320--305349	15	2.0	15	93	0	51	23	0	0	76	0.78
305504--305547	7	5.7	7	80	19	52	15	4	0	79	0.89
305508--305547	16	2.5	16	92	8	64	17	5	0	77	0.94
312529--312586	3	20.0	3	85	7	84	29	0	0	70	0.87
312525--312586	14	4.4	14	88	6	81	29	0	0	70	0.87
317549--317580	10	3.2	10	100	0	64	90	0	9	0	0.45
317549--317593	17	2.7	17	89	3	74	86	0	13	0	0.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
317549--317593	9	4.9	9	83	10	56	86	0	13	0	0.57
320042--320143	42	2.5	41	85	4	125	24	19	20	35	1.96
320770--320854	3	28.0	3	88	7	127	31	1	0	67	0.99
322252--322279	2	14.0	2	100	0	56	50	0	0	50	1.00
326031--326062	2	16.0	2	100	0	64	50	0	0	50	1.00
328023--328058	16	2.3	15	90	9	54	47	5	0	47	1.25
328317--328400	35	2.5	35	79	11	102	51	4	3	40	1.40
329738--329803	3	22.7	3	76	11	66	62	0	1	36	1.05
329738--329803	14	4.9	14	78	10	68	62	0	1	36	1.05
329910--331303	45	31.3	45	90	6	2127	35	18	23	22	1.96

Tables:   1   2   3   4   5