genome.fa.s8037.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008037.1 Hibiscus syriacus cultivar Beakdansim tig00110524_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111676

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1538--1615	30	2.6	30	97	0	147	23	34	16	25	1.95
7819--7870	19	2.6	21	87	6	72	44	7	13	34	1.72
9596--9646	20	2.6	20	90	3	77	31	13	7	47	1.72
13636--13682	20	2.5	20	86	13	64	31	12	8	46	1.72
16388--16434	2	23.5	2	91	0	76	46	4	0	48	1.21
17681--17722	22	2.0	21	90	4	66	38	35	2	23	1.68
19026--19078	26	2.0	27	82	17	67	52	9	30	7	1.61
24273--24302	13	2.4	13	94	5	53	43	0	30	26	1.55
29368--29480	36	3.2	36	91	1	165	32	35	4	27	1.77
29401--29466	13	5.5	11	74	22	62	33	34	3	28	1.73
29380--29519	36	4.1	33	83	9	97	30	36	2	30	1.72
29870--29913	17	2.6	17	85	3	54	84	0	15	0	0.63
29870--29911	10	4.0	10	90	9	66	85	0	14	0	0.59
31355--31396	20	2.1	20	100	0	84	38	19	21	21	1.94
35122--35234	36	3.2	36	89	1	165	31	36	4	27	1.77
35134--35273	36	4.1	33	82	9	97	29	36	3	30	1.74
40732--40760	12	2.3	13	94	5	51	72	0	3	24	1.00
52598--52627	6	5.0	6	100	0	60	0	16	0	83	0.65
52598--52634	18	2.1	18	89	0	56	0	21	0	78	0.75
52632--52675	23	1.9	23	90	0	70	13	11	15	59	1.62
59368--59403	11	3.3	11	84	0	54	13	8	5	72	1.27
59719--59781	23	3.0	21	81	11	67	85	7	3	3	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59747--59787	19	2.2	18	91	4	64	87	12	0	0	0.53
59720--59781	1	62.0	1	78	0	52	87	8	3	1	0.72
64299--64338	20	1.9	22	85	10	57	40	12	30	17	1.86
65124--65227	33	3.1	33	82	9	95	30	36	1	30	1.69
66053--66093	11	3.7	11	90	0	64	14	9	0	75	1.04
67345--67371	11	2.5	11	100	0	54	37	7	37	18	1.79
67403--67455	23	2.2	25	87	9	76	60	13	16	9	1.58
67411--67461	25	2.1	23	85	7	66	62	11	17	7	1.51
70392--70442	19	2.6	20	87	3	68	45	5	15	33	1.71
78730--78780	19	2.6	20	87	3	68	45	5	15	33	1.71
81321--81398	35	2.2	37	90	4	124	28	3	37	30	1.75
83341--83453	36	3.2	36	92	1	174	32	36	3	27	1.74
83341--83439	13	8.3	11	71	23	67	31	36	3	29	1.73
83353--83492	36	4.1	33	83	9	97	30	36	2	30	1.72
87760--87799	20	1.9	20	85	10	53	32	7	32	27	1.85
88009--88044	15	2.4	15	90	0	54	50	5	0	44	1.25
92037--92076	20	1.9	20	85	10	53	32	7	32	27	1.85
92286--92321	15	2.4	15	90	0	54	50	5	0	44	1.25
94951--95063	36	3.2	36	92	1	174	32	36	3	27	1.74
94951--95049	13	8.3	11	71	23	67	31	36	3	29	1.73
94963--95102	36	4.1	33	83	9	97	30	36	2	30	1.72
100563--100592	13	2.4	13	94	5	53	26	30	0	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106376--106455	35	2.2	37	88	4	119	27	3	38	30	1.74
109459--109515	27	2.1	27	83	6	71	59	12	15	12	1.61

Tables:   1

The End!