Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008038.1 Hibiscus syriacus cultivar Beakdansim tig00110525_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73779

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1928--1957
13
2.4
13
94
5
53
26
30
0
43
1.55
7734--7813
35
2.2
37
88
4
119
27
3
38
30
1.74
10822--10878
27
2.1
27
83
6
71
59
12
15
12
1.61
29431--29455
13
1.9
13
100
0
50
24
44
0
32
1.54
29434--29548
36
3.2
36
93
1
196
30
37
3
28
1.74
29447--29531
11
7.2
11
72
22
66
31
36
3
28
1.74
29931--29956
11
2.4
11
100
0
52
84
0
15
0
0.62
33604--33637
12
2.7
13
90
4
52
23
35
0
41
1.55
33630--33700
36
2.0
36
94
0
124
33
35
2
28
1.72
33651--33720
22
3.0
22
84
12
79
34
34
2
28
1.72
37783--37807
13
1.9
13
100
0
50
24
44
0
32
1.54
37799--37870
11
6.2
11
75
22
67
34
34
2
27
1.72
37818--37887
22
3.0
22
84
12
79
35
32
2
28
1.72
37808--37879
11
6.3
11
76
20
51
33
33
4
29
1.77
37786--37867
36
2.3
36
91
0
128
32
36
2
28
1.70
41927--41951
13
1.9
13
100
0
50
24
44
0
32
1.54
41930--42011
36
2.3
36
89
4
121
34
35
2
28
1.70
41962--42031
22
3.0
22
84
12
79
35
32
2
28
1.72
46101--46125
13
1.9
13
100
0
50
24
44
0
32
1.54
46104--46185
36
2.3
36
89
0
128
30
39
2
28
1.70
46136--46205
22
3.0
22
82
12
79
32
34
4
28
1.77
46800--46851
16
3.3
15
77
17
52
15
17
0
67
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51931--51955
13
1.9
13
100
0
50
24
44
0
32
1.54
51934--52040
36
3.0
36
94
1
189
28
37
3
29
1.75
51947--52027
11
6.8
11
72
22
58
30
37
3
28
1.75
62553--62604
21
2.5
22
78
15
65
53
7
9
28
1.61
65827--65879
19
2.6
20
88
8
72
43
5
13
37
1.67
66733--66783
21
2.4
22
78
15
63
56
7
7
27
1.55
71556--71667
36
3.2
36
91
2
165
32
35
3
28
1.74
71556--71693
11
11.9
11
69
23
70
30
36
2
30
1.72
71639--71706
32
2.1
33
83
8
86
29
35
1
33
1.67

Tables:   1

The End!