Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008039.1 Hibiscus syriacus cultivar Beakdansim tig00110526_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71202

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5829--5880
21
2.5
22
78
15
65
53
7
9
28
1.61
9095--9147
19
2.6
20
88
8
72
43
5
13
37
1.67
9998--10048
21
2.4
22
78
15
63
56
7
7
27
1.55
14841--14953
36
3.2
36
91
1
165
32
35
3
28
1.74
14841--14940
13
8.4
11
72
23
69
31
36
3
30
1.73
14924--14992
33
2.1
33
83
5
86
30
34
1
33
1.67
19874--19903
13
2.4
13
94
5
53
43
0
30
26
1.55
27743--27855
36
3.2
36
89
1
165
32
36
4
26
1.77
27755--27894
36
4.1
33
82
11
97
30
36
3
30
1.74
32171--32219
24
2.0
26
92
8
84
34
24
22
18
1.96
32341--32369
15
2.0
15
93
6
51
75
3
20
0
0.94
36210--36257
24
1.9
26
91
8
82
35
25
20
18
1.95
46229--46264
13
2.6
14
91
4
56
25
47
0
27
1.52
47765--47827
22
2.8
22
79
11
74
79
3
12
4
1.01
49015--49091
13
5.8
12
76
20
57
79
2
12
5
1.01
49016--49079
23
2.8
23
77
15
71
79
3
12
4
1.00
50286--50324
13
2.9
13
88
7
60
79
0
15
5
0.90
50267--50312
22
2.1
22
84
8
58
78
2
10
8
1.05
51498--51553
18
2.9
18
85
12
76
82
5
10
1
0.91
51498--51558
20
3.0
20
79
9
63
80
4
11
3
0.99
51500--51561
22
3.1
20
84
9
74
82
3
11
3
0.91
51500--51561
17
3.2
19
76
19
56
82
3
11
3
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52748--52792
22
2.1
21
83
4
54
77
2
13
6
1.05
52765--52804
13
3.0
13
89
7
62
80
0
15
5
0.88
54075--54228
75
2.0
73
91
8
247
16
24
3
55
1.58
54075--54191
39
3.1
39
63
23
95
16
25
4
53
1.60
54462--54503
20
2.1
20
90
0
66
80
2
11
4
0.95
55679--55784
18
5.7
18
77
15
108
82
5
9
2
0.94
55690--55796
8
14.4
7
71
23
53
81
4
10
3
0.96
55681--55776
40
2.4
40
92
1
165
83
5
9
2
0.88
56220--57369
573
2.0
573
99
0
2255
26
22
11
39
1.87
57509--57576
22
3.2
21
72
21
61
75
4
13
7
1.17
57521--57597
13
5.8
12
76
20
57
79
2
12
5
1.01
58769--58824
18
2.9
18
85
12
76
82
5
10
1
0.91
58769--58829
20
3.0
20
79
9
63
80
4
11
3
0.99
58771--58832
22
3.1
20
84
9
74
82
3
11
3
0.91
58771--58832
17
3.2
19
76
19
56
82
3
11
3
0.91
60034--60073
13
3.0
13
89
7
62
80
0
15
5
0.88
61265--61304
13
3.0
13
89
7
62
80
0
15
5
0.88
62480--62524
22
2.1
22
87
4
65
80
2
11
6
0.99
62497--62536
13
3.0
13
89
7
62
80
0
15
5
0.88
63714--63785
9
8.0
9
68
17
51
80
2
12
4
0.96
63712--63744
17
1.9
17
100
0
66
84
6
9
0
0.76
63712--63765
19
2.9
19
79
15
60
81
5
11
1
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63714--63785
13
5.7
13
75
14
62
80
2
12
4
0.96
63715--63779
20
3.2
19
72
18
51
80
3
12
4
0.99
64977--65016
13
3.0
13
89
7
62
80
0
15
5
0.88
66208--66247
13
3.0
13
89
7
62
80
0
15
5
0.88
67420--67475
18
2.9
18
85
12
76
82
5
10
1
0.91
67420--67480
20
3.0
20
79
9
63
80
4
11
3
0.99
67422--67483
22
3.1
20
84
9
74
82
3
11
3
0.91
67422--67483
17
3.2
19
76
19
56
82
3
11
3
0.91
68685--68724
13
3.0
13
89
7
62
80
0
15
5
0.88
69095--69173
19
4.0
19
80
11
88
81
3
12
2
0.94
69097--69172
13
5.7
13
79
15
84
82
2
11
2
0.87
70344--70414
9
8.0
9
74
14
67
84
1
9
4
0.81
70342--70397
14
3.9
15
79
11
64
85
3
7
3
0.81
70344--70414
12
5.8
12
79
11
72
84
1
9
4
0.81

Tables:   1

The End!