Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000804.1 Hibiscus syriacus cultivar Beakdansim tig00001561_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85694

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6173--6205
16
2.1
16
100
0
66
57
24
12
6
1.57
6269--6342
10
7.7
10
67
24
52
56
18
13
10
1.66
6275--6337
16
4.0
16
85
4
92
55
19
14
11
1.68
6277--6336
31
1.9
31
93
0
102
56
20
13
10
1.65
7081--7136
14
4.3
14
80
17
66
53
25
12
8
1.67
7061--7135
24
3.1
24
88
3
98
56
21
10
12
1.66
30115--30140
5
5.2
5
100
0
52
38
0
0
61
0.96
41581--41618
18
2.1
18
90
9
60
44
0
0
55
0.99
42336--42414
5
16.2
5
73
15
67
46
1
0
51
1.08
42326--42407
14
6.4
12
81
14
78
46
2
0
51
1.14
42326--42375
21
2.2
22
82
13
66
46
2
0
52
1.12
42327--42410
28
3.2
27
82
11
95
47
2
0
50
1.14
46127--46193
25
2.9
23
75
22
68
41
5
0
52
1.26
46135--46193
21
2.6
22
85
15
84
42
6
0
50
1.28
46139--46213
25
2.9
26
77
20
84
40
5
0
54
1.23
46135--46207
21
3.0
24
86
11
80
42
5
0
52
1.24
46190--46246
24
2.3
25
84
3
80
40
1
0
57
1.09
46601--46632
10
3.1
10
95
4
55
50
0
0
50
1.00
47150--47175
13
2.0
13
100
0
52
53
7
15
23
1.67
49761--49850
26
3.4
26
76
13
78
43
2
2
52
1.26
49815--49886
25
2.8
26
85
6
85
40
2
0
56
1.13
49944--50012
28
2.5
28
95
0
120
33
28
23
14
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50342--50381
16
2.4
17
83
4
55
60
5
17
17
1.54
52210--52284
37
2.0
37
100
0
150
33
24
16
26
1.95
53317--53400
38
2.2
38
91
6
136
13
11
38
36
1.81
53498--53545
21
2.4
18
80
16
51
37
4
2
56
1.30
53877--53922
18
2.7
18
90
6
69
28
30
6
34
1.82
56312--56374
16
3.9
16
87
0
63
14
12
28
44
1.82
56324--56407
32
2.6
32
82
0
96
15
14
25
45
1.84
56344--56407
16
4.0
16
85
0
83
15
15
23
45
1.84
56346--56420
32
2.3
32
84
4
89
13
14
22
49
1.78
56458--56491
15
2.3
15
94
0
59
52
0
2
44
1.16
60683--60719
16
2.3
17
81
13
51
29
10
13
45
1.77
60980--61029
24
2.1
24
82
17
61
54
2
0
44
1.11
61403--61564
2
77.5
2
66
17
71
43
4
4
46
1.46
61418--61463
9
5.6
9
78
17
55
34
2
6
56
1.37
61404--61478
24
3.3
23
87
5
107
38
1
6
53
1.36
61494--61559
24
2.7
24
81
11
80
53
4
3
39
1.37
61498--61542
9
5.4
9
77
17
53
55
6
2
35
1.38
70925--71007
23
3.6
23
90
0
121
28
27
24
19
1.98
72642--72673
13
2.4
14
85
15
50
25
0
0
75
0.81
72682--72720
15
2.6
15
79
0
51
58
0
2
38
1.12
75881--75937
20
2.8
20
86
7
71
26
21
21
31
1.98
76616--76653
18
2.2
18
85
4
51
13
26
0
60
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
84343--84383
16
2.5
17
84
4
57
48
2
0
48
1.14

Tables:   1

The End!