genome.fa.s8042.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008042.1 Hibiscus syriacus cultivar Beakdansim tig00110529_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  188401

Tables:   1   

This is table  1  of  1  ( 107 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343--580	128	1.9	127	91	7	398	28	11	3	56	1.52
638--713	39	1.9	40	81	7	93	11	10	6	71	1.31
12053--13143	105	10.4	105	94	1	1855	33	25	18	23	1.97
14964--15201	126	1.9	123	92	7	401	28	11	4	55	1.53
29286--29379	11	8.6	11	68	6	57	36	0	1	62	1.02
39707--39765	14	4.1	14	80	4	73	38	6	20	33	1.79
39709--39767	29	2.0	29	93	0	100	40	8	20	30	1.82
40109--40176	23	3.0	22	74	8	55	44	1	2	51	1.25
40262--40374	31	3.7	30	71	11	86	48	0	0	49	1.13
40301--40366	8	8.6	8	71	15	50	43	0	1	54	1.09
40331--40382	14	3.4	16	82	10	56	53	0	0	46	1.00
40355--40446	24	3.8	23	71	22	73	47	0	1	51	1.07
40614--40693	42	1.9	42	92	0	133	47	13	17	21	1.82
41514--41814	20	14.9	20	75	15	205	39	23	20	16	1.92
41575--41751	62	2.9	62	75	14	170	37	24	20	16	1.93
41514--41826	40	7.8	40	81	8	323	39	23	20	16	1.92
41595--41826	20	11.4	20	81	9	229	37	24	21	17	1.94
42709--42757	6	8.2	6	100	0	98	0	16	48	34	1.46
42868--42997	20	6.4	20	77	8	129	17	20	24	36	1.94
42868--42975	40	2.7	40	89	0	171	17	21	23	37	1.94
42881--43001	60	2.0	62	88	6	185	18	21	23	37	1.94
42881--43059	20	8.9	19	73	12	112	17	20	21	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44522--44564	15	2.9	15	78	0	50	13	16	58	11	1.64
50774--50864	24	3.8	24	85	2	121	25	17	19	37	1.94
50774--50864	47	1.9	48	88	2	139	25	17	19	37	1.94
57278--57319	20	2.2	19	84	12	59	30	28	2	38	1.70
58666--58727	32	2.0	33	84	9	85	58	0	0	41	0.98
72489--72598	34	3.3	34	87	7	161	26	15	23	34	1.94
74800--74845	19	2.3	21	85	7	60	43	0	2	54	1.12
75740--75783	21	2.0	21	82	8	52	29	13	22	34	1.93
75784--75831	19	2.6	20	83	9	59	31	22	22	22	1.99
77440--77489	23	2.2	23	96	0	91	18	28	24	30	1.97
77440--77504	23	2.8	23	88	0	58	21	24	23	30	1.99
79544--79576	16	2.0	17	88	5	50	57	0	24	18	1.40
79534--79574	20	2.1	19	86	4	55	60	0	19	19	1.36
83824--83914	30	3.0	30	82	7	105	35	20	17	26	1.95
84594--84651	21	2.8	21	86	0	80	22	39	18	18	1.92
89853--89961	32	3.3	32	72	16	96	41	19	18	21	1.91
93283--93334	25	2.1	25	100	0	104	59	0	11	28	1.32
98959--99100	36	4.0	36	88	5	207	19	24	23	33	1.97
101829--101891	11	5.9	11	73	14	51	57	3	1	38	1.24
101817--101872	25	2.3	24	81	6	69	55	5	0	39	1.23
106634--106731	20	4.8	20	77	3	88	36	23	18	21	1.95
106575--106731	41	3.9	41	70	11	126	38	25	17	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106718--106888	20	8.6	20	84	5	107	35	26	18	20	1.95
106698--106907	60	3.5	58	80	7	208	37	25	17	20	1.94
106752--106907	20	7.8	20	87	4	174	35	25	17	21	1.95
106718--106907	40	4.8	40	86	5	208	36	25	17	20	1.94
107583--107629	24	2.0	24	87	8	69	25	14	21	38	1.92
107798--107822	12	2.1	12	100	0	50	72	0	28	0	0.86
110080--110333	19	14.4	19	81	17	325	47	18	20	13	1.82
110145--110355	38	5.9	35	90	9	288	47	17	21	14	1.82
110108--110369	109	2.5	108	87	9	375	46	17	21	14	1.83
110360--110460	19	5.6	19	86	11	158	14	22	17	44	1.86
110564--110600	14	2.6	14	91	0	65	45	21	0	32	1.52
112562--112618	14	3.7	14	77	20	60	45	22	21	10	1.82
112543--112635	33	2.8	33	95	0	168	47	21	20	10	1.80
112506--112640	19	7.6	19	76	16	128	45	23	19	11	1.82
112636--112747	19	6.4	19	73	19	118	7	17	28	46	1.75
112636--112727	33	2.8	33	93	3	150	7	18	28	45	1.76
112666--112763	19	5.4	18	74	16	69	9	18	27	44	1.80
112811--113275	92	5.1	93	97	2	877	46	19	12	22	1.83
114411--114744	169	2.0	165	97	2	632	27	25	25	21	1.99
115104--115193	14	5.7	14	72	23	72	43	23	24	8	1.82
115096--115210	33	3.5	33	96	0	212	46	20	22	9	1.79
115118--115215	19	5.7	19	70	22	81	44	22	22	10	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115227--115283	14	3.7	14	75	20	60	8	24	22	43	1.81
115241--115329	19	4.9	19	72	15	80	11	23	21	43	1.84
115211--115329	33	3.4	33	88	6	157	10	22	22	44	1.82
115424--115491	31	2.2	32	91	2	111	45	19	23	11	1.83
115443--115491	14	3.0	17	71	20	50	42	20	24	12	1.86
115666--115720	22	2.5	22	81	0	74	20	16	40	23	1.91
115865--116055	20	9.6	20	78	8	185	19	20	24	35	1.96
115867--116016	39	3.8	38	82	11	171	22	20	23	33	1.97
115865--116055	59	3.2	60	81	5	219	19	20	24	35	1.96
116022--116119	20	4.8	20	77	3	79	21	18	23	36	1.95
116022--116119	41	2.4	41	77	6	110	21	18	23	36	1.95
120814--120849	15	2.2	16	90	9	56	25	27	33	13	1.94
120831--120882	18	2.8	18	85	5	68	17	23	44	15	1.86
125955--125988	15	2.1	16	89	10	52	26	26	35	11	1.91
125981--126005	13	1.9	13	100	0	50	20	24	40	16	1.91
125986--126026	18	2.3	18	95	0	73	12	21	48	17	1.79
125978--126044	31	2.2	31	94	0	116	14	20	47	16	1.82
126004--126040	13	2.8	13	91	0	65	13	21	48	16	1.80
127592--127694	51	2.0	51	98	0	197	34	21	19	24	1.96
136972--137012	16	2.4	17	88	8	57	29	0	24	46	1.53
139538--139582	19	2.3	19	84	7	54	4	24	2	68	1.19
149836--149895	31	1.9	31	89	0	93	26	23	10	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152016--152098	34	2.4	34	87	0	112	32	9	20	37	1.85
156722--156762	18	2.3	18	100	0	82	51	4	4	39	1.45
160009--160045	7	5.4	7	93	6	67	24	29	29	16	1.96
160009--160045	13	2.7	14	91	8	67	24	29	29	16	1.96
160035--160075	17	2.4	17	91	0	64	19	24	39	17	1.92
160076--160128	10	5.5	10	82	8	74	22	32	28	16	1.96
160069--160158	19	4.7	19	91	1	135	26	30	24	18	1.98
160069--160157	9	9.3	9	75	11	79	26	30	24	17	1.98
167310--167339	7	4.4	7	91	8	53	23	30	30	16	1.96
167314--167339	13	2.0	13	100	0	52	23	30	30	15	1.95
167328--167385	17	3.5	16	84	13	73	20	25	36	17	1.94
167380--167429	19	2.6	19	87	0	64	28	28	24	20	1.99
179276--179316	16	2.6	16	84	0	64	43	0	0	56	0.99
179275--179333	28	2.1	28	84	6	75	40	0	3	55	1.16
179274--179350	29	2.6	30	80	10	79	40	1	3	54	1.27
179434--179459	2	13.0	2	100	0	52	50	0	0	50	1.00
180029--180091	25	2.5	26	75	15	60	38	9	0	52	1.34
185695--185761	34	2.0	33	91	2	107	38	8	19	32	1.83
187654--187717	23	2.8	23	80	0	83	34	26	23	15	1.95

Tables:   1

The End!