genome.fa.s8043.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008043.1 Hibiscus syriacus cultivar Beakdansim tig00110530_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108012

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
368--404	7	5.4	7	93	6	67	24	29	29	16	1.96
368--404	13	2.7	14	91	8	67	24	29	29	16	1.96
394--432	16	2.4	16	95	0	69	17	25	38	17	1.92
426--514	19	4.7	19	90	4	126	26	30	23	19	1.98
426--513	9	9.3	9	74	9	77	27	30	23	18	1.97
7654--7683	7	4.4	7	91	8	53	23	30	30	16	1.96
7658--7683	13	2.0	13	100	0	52	23	30	30	15	1.95
7672--7730	17	3.5	16	86	11	82	20	25	37	16	1.93
7726--7775	9	5.1	10	76	13	50	28	30	22	20	1.98
7725--7775	20	2.6	19	87	3	66	27	29	23	19	1.98
19756--19797	21	2.0	20	86	13	59	38	0	0	61	0.96
19757--19834	29	2.6	30	82	8	88	39	1	3	55	1.26
19923--19948	2	13.0	2	100	0	52	50	0	0	50	1.00
20540--20602	25	2.5	26	75	15	60	38	9	0	52	1.34
26201--26270	35	2.0	36	91	5	117	42	7	18	31	1.77
28196--28259	23	2.8	23	80	0	83	34	26	23	15	1.95
28668--28727	30	2.0	30	81	12	70	41	20	6	31	1.78
36266--36325	31	1.9	31	89	0	93	28	11	15	45	1.81
38280--38367	31	2.8	31	85	0	122	44	5	5	44	1.51
39570--39612	20	2.2	19	83	4	50	41	2	4	51	1.35
40549--40608	30	2.0	30	100	0	120	53	6	10	30	1.60
42846--42898	27	1.9	28	84	3	72	37	1	0	60	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46027--46055	6	4.8	6	100	0	58	34	17	17	31	1.93
49816--49888	29	2.5	30	86	8	82	41	13	13	31	1.84
49832--49891	29	2.1	29	100	0	120	38	13	13	35	1.84
50670--50877	75	2.8	75	88	2	283	23	31	24	20	1.98
56637--56719	21	3.9	21	74	10	60	22	37	25	14	1.92
58681--58714	17	2.0	17	94	0	59	17	0	26	55	1.42
59302--59487	75	2.5	75	87	1	255	24	30	23	21	1.99
59302--59508	75	2.7	74	83	7	247	23	30	24	21	1.99
61431--61480	24	2.1	24	92	0	82	32	8	10	50	1.65
62091--62125	2	17.5	2	100	0	70	48	0	0	51	1.00
62582--62634	21	2.5	21	75	0	61	22	20	18	37	1.94
62624--62796	20	8.6	20	89	1	220	37	19	20	21	1.94
62974--63039	22	3.0	22	90	0	105	24	39	15	21	1.91
63365--63437	33	2.2	33	85	7	94	16	20	23	39	1.92
63425--63479	20	2.8	20	85	0	74	12	16	21	49	1.79
63444--63488	20	2.2	20	80	0	54	17	13	17	51	1.77
65347--65489	20	7.5	20	80	9	147	41	17	20	20	1.91
65347--65519	93	1.9	93	90	0	274	42	16	20	19	1.89
65533--65585	20	2.7	20	90	0	88	32	13	18	35	1.90
66086--66127	21	2.2	19	87	12	59	21	35	19	23	1.96
67568--67603	14	2.6	14	90	0	54	30	0	22	47	1.52
67733--67804	33	2.2	33	89	2	108	45	18	22	13	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67858--67946	20	4.4	20	85	2	126	17	21	24	35	1.95
70784--70812	13	2.3	13	94	5	51	37	0	13	48	1.43
70810--70890	31	2.6	32	92	2	128	32	34	2	30	1.71
79908--79961	24	2.2	24	90	0	81	42	20	16	20	1.89
79908--79975	24	2.8	24	84	0	73	39	19	16	25	1.91
80803--80849	20	2.3	20	88	0	67	19	19	29	31	1.96
80836--80924	20	4.4	20	76	5	90	20	19	20	40	1.92
80843--80890	19	2.5	20	89	3	71	18	16	22	41	1.90
83756--83795	20	2.0	20	100	0	80	40	20	10	30	1.85
84306--84369	33	2.0	31	87	3	83	51	9	23	15	1.72
92238--92267	15	2.0	15	93	0	51	53	20	3	23	1.60
98800--98872	23	3.2	23	90	1	121	21	32	23	21	1.98
98854--98896	19	2.3	19	84	8	52	20	32	32	13	1.92
103453--103485	3	10.7	3	93	6	57	66	0	0	33	0.92
105637--105751	41	2.7	42	79	8	115	38	26	20	13	1.91

Tables:   1

The End!