genome.fa.s8045.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008045.1 Hibiscus syriacus cultivar Beakdansim tig00110533_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  243713

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11287--11339	23	2.3	23	87	6	72	32	26	20	20	1.98
12934--12988	26	2.1	26	100	0	110	16	18	23	41	1.89
14762--14808	18	2.6	18	96	0	85	34	17	31	17	1.92
15647--15883	54	4.4	54	75	9	227	31	21	16	29	1.95
15647--15883	105	2.2	107	75	3	246	31	21	16	29	1.95
16626--16690	21	3.1	21	86	8	80	15	6	21	56	1.60
17365--17421	18	3.2	18	84	0	78	28	17	29	24	1.97
23983--24041	20	2.9	19	80	11	73	27	37	23	11	1.90
30917--30949	13	2.5	13	95	0	57	75	9	15	0	1.03
30917--30956	13	3.1	13	85	7	55	75	12	12	0	1.06
37981--38795	405	2.0	405	96	0	1515	26	17	21	34	1.95
48484--48533	24	2.1	24	96	0	91	30	26	2	42	1.66
56566--56602	19	1.9	19	88	0	56	75	0	0	24	0.80
56565--56602	10	3.9	10	86	6	51	76	0	0	23	0.79
64226--64283	21	2.8	21	97	0	107	50	6	8	34	1.60
69094--69456	182	2.0	181	97	1	692	34	18	18	27	1.95
73318--73349	16	2.0	16	93	0	55	31	15	6	46	1.71
73890--74079	95	2.0	95	100	0	380	35	15	14	33	1.89
83547--83576	15	1.9	16	93	6	53	36	0	0	63	0.95
85500--85673	90	1.9	89	92	1	294	37	10	6	45	1.65
87084--87161	37	2.1	37	100	0	156	25	32	19	23	1.98
94202--94241	20	2.0	20	90	0	62	30	30	15	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101661--101696	19	1.9	18	88	5	54	58	2	0	38	1.13
107747--107774	2	14.0	2	100	0	56	50	0	0	50	1.00
108321--108456	68	2.0	68	100	0	272	33	13	7	45	1.71
112307--112471	81	2.0	83	95	4	300	41	17	6	34	1.74
112564--112623	21	2.9	21	90	5	95	21	35	25	18	1.96
114425--114475	23	2.3	23	83	6	70	13	41	23	21	1.89
114457--114496	21	1.9	21	89	0	62	22	42	25	10	1.84
114908--114954	17	2.7	18	90	6	62	23	0	21	55	1.44
114916--114954	17	2.4	17	95	4	71	20	0	23	56	1.42
118819--118851	15	2.1	16	88	11	50	69	0	9	21	1.15
119114--119170	26	2.1	27	87	3	80	50	1	0	47	1.11
119845--119881	20	1.9	19	89	10	58	51	10	18	18	1.75
120720--120797	31	2.5	31	89	0	111	20	7	15	56	1.63
128890--128950	23	2.9	21	85	11	72	21	32	26	19	1.97
130603--130631	12	2.4	12	100	0	58	27	31	41	0	1.56
135415--135450	18	2.0	18	88	0	54	27	16	22	33	1.95
136949--136994	24	2.0	24	86	4	67	67	2	21	8	1.29
141222--141283	20	2.9	22	80	7	74	24	14	16	45	1.84
141329--141367	20	2.1	19	85	9	53	25	23	20	30	1.98
143627--143682	20	2.8	20	100	0	112	28	19	26	25	1.99
144877--144919	14	3.2	13	81	15	52	69	0	25	4	1.07
156509--156552	18	2.5	18	96	3	81	34	0	11	54	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156974--157066	47	2.0	47	93	4	161	17	27	18	36	1.93
168336--168447	49	2.2	50	88	3	172	54	10	17	16	1.70
169597--169744	75	2.0	71	90	5	233	20	18	20	39	1.92
176296--176356	24	2.5	24	91	0	95	19	22	26	31	1.98
176470--176540	24	3.0	24	83	2	90	19	23	25	30	1.98
176819--176857	18	2.2	17	86	4	51	53	2	15	28	1.55
191054--191165	23	4.9	23	81	13	133	23	19	25	32	1.98
197918--197970	23	2.3	23	86	0	79	18	20	26	33	1.96
198608--198658	24	2.1	25	89	10	79	35	11	15	37	1.84
210638--210825	46	4.1	46	83	0	232	21	24	11	43	1.85
210659--210965	26	12.8	26	73	17	254	21	21	12	44	1.85
210638--210832	92	2.1	92	88	0	291	21	24	11	43	1.85
210745--210964	72	3.0	72	82	6	255	20	20	12	45	1.83
211443--211469	14	1.9	14	100	0	54	25	22	22	29	1.99
217770--217968	46	4.1	51	74	17	185	22	23	12	42	1.87
217807--217968	46	3.5	46	87	0	243	22	23	12	41	1.88
217890--218028	66	2.1	66	85	2	190	22	24	12	41	1.88
217957--218094	46	3.0	45	87	6	188	23	22	13	41	1.88
217843--218080	112	2.1	112	88	1	352	21	24	12	41	1.88
220845--221297	55	8.2	55	85	0	591	30	17	16	35	1.92
222504--222571	30	2.3	30	97	0	127	26	13	2	57	1.50
226622--226722	45	2.2	45	89	3	150	21	19	13	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
227094--227294	95	2.1	96	84	4	255	24	21	12	41	1.88
230502--230842	55	6.2	55	82	1	362	29	16	17	37	1.91
230502--230850	110	3.2	109	83	2	403	28	16	17	37	1.92
230531--230850	165	1.9	165	85	1	435	29	15	16	38	1.90
232942--232996	20	2.7	21	82	5	67	27	25	20	27	1.99
234008--234045	20	1.9	20	88	0	58	21	26	18	34	1.96
235908--235945	20	1.9	20	88	0	58	34	18	21	26	1.96
235955--236028	20	3.7	20	88	0	103	32	31	13	22	1.93
235959--236051	40	2.3	40	83	3	107	34	27	13	23	1.93
241842--241916	20	3.7	20	80	1	78	33	21	16	29	1.95

Tables:   1

The End!