genome.fa.s8046.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008046.1 Hibiscus syriacus cultivar Beakdansim tig00110534_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136486

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
912--956	23	2.0	23	86	8	65	35	22	15	26	1.94
1632--1860	20	11.5	20	81	4	212	19	18	24	37	1.94
1632--1860	39	5.8	39	85	3	235	19	18	24	37	1.94
1632--1819	79	2.3	81	85	3	238	21	18	25	35	1.96
1651--1840	59	3.2	58	79	8	195	20	18	25	35	1.95
1632--1860	79	2.9	79	82	3	237	19	18	24	37	1.94
1847--1929	21	4.0	21	70	6	69	26	16	22	33	1.96
2068--2123	26	2.2	25	93	6	96	37	21	3	37	1.71
30845--30926	39	2.1	39	100	0	164	35	4	14	45	1.67
30994--31127	68	2.0	68	100	0	268	42	11	14	31	1.81
31902--31946	22	2.0	22	87	12	65	73	6	6	13	1.24
35556--35598	6	6.8	6	84	10	59	2	13	2	81	0.89
35556--35601	20	2.4	18	82	10	56	2	13	2	82	0.85
42325--42381	23	2.5	23	91	0	87	22	28	24	24	2.00
42325--42389	23	2.8	23	86	4	69	23	26	24	26	2.00
42489--42518	2	15.0	2	100	0	60	50	0	0	50	1.00
42656--42693	12	2.8	13	88	11	51	55	0	7	36	1.29
46151--46202	26	2.0	26	85	7	70	71	5	9	13	1.30
49045--49128	27	3.0	26	76	15	71	72	2	5	19	1.16
49226--49268	22	1.9	23	85	4	61	74	2	4	18	1.10
49793--50000	103	2.0	102	96	0	380	28	21	17	32	1.96
65206--65234	3	9.7	3	100	0	58	0	34	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69847--69894	23	2.1	23	84	0	60	37	12	16	33	1.86
70320--70382	23	2.7	23	92	0	99	38	20	4	36	1.74
70528--70594	30	2.2	29	82	10	73	43	0	4	52	1.21
70739--70811	23	3.2	23	82	7	94	39	21	4	34	1.73
69960--71014	430	2.5	430	97	0	2003	38	12	7	41	1.70
73372--74079	365	1.9	366	93	1	1233	33	16	14	35	1.89
73372--74046	183	3.7	183	96	0	1228	33	16	14	34	1.90
75548--75628	3	27.0	3	76	0	63	20	33	8	37	1.84
75561--75640	12	6.4	12	78	8	79	18	33	11	36	1.87
75552--75643	18	5.1	18	78	0	85	18	33	9	38	1.84
75582--75640	24	2.5	24	88	0	91	18	33	10	37	1.85
75552--75643	6	15.3	6	79	0	67	18	33	9	38	1.84
77624--78250	200	3.1	200	98	0	1204	30	17	15	36	1.91
78369--78417	19	2.6	19	93	0	80	57	10	2	30	1.43
80207--80272	33	2.0	33	90	0	105	22	48	0	28	1.51
80306--80370	21	3.1	21	79	0	76	16	30	13	38	1.88
82770--82816	20	2.3	20	89	10	78	17	17	10	55	1.69
82556--83028	181	2.6	181	88	1	669	26	16	14	43	1.86
83095--83581	229	2.1	228	96	0	893	40	7	8	44	1.62
91485--91614	42	3.0	41	79	4	134	32	21	23	23	1.98
91950--91979	15	2.0	15	93	0	51	20	16	16	46	1.84
93860--93912	14	3.8	14	97	0	97	47	0	47	5	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94374--94753	41	9.2	41	82	3	261	35	18	19	26	1.95
94373--94753	84	4.6	82	87	1	458	34	18	19	26	1.95
94374--94753	125	3.1	123	81	4	422	35	18	19	26	1.95
101482--101515	14	2.3	15	90	5	52	35	2	8	52	1.47
101596--101685	25	4.0	22	67	26	55	46	0	0	53	1.00
101602--101674	25	2.9	26	78	15	91	49	0	0	50	1.00
101782--101832	23	2.2	23	82	0	57	45	1	1	50	1.24
101945--102013	23	3.0	23	79	10	72	50	1	0	47	1.09
101898--102047	53	2.9	53	78	16	161	51	0	0	48	1.05
101954--102051	31	3.1	32	78	11	103	47	0	0	52	1.00
101985--102031	22	2.1	23	88	4	69	53	0	0	46	1.00
101958--102048	22	4.2	22	74	13	64	49	0	0	50	1.00
101942--102063	53	2.3	53	83	11	142	50	0	0	48	1.06
104556--104589	17	2.0	17	94	0	59	20	35	20	23	1.96
107630--107660	4	7.8	4	92	0	53	3	22	0	74	0.96
110929--110961	16	2.1	16	100	0	66	57	24	12	6	1.57
111027--111101	10	7.7	10	69	21	61	57	21	12	9	1.62
111031--111095	16	4.1	16	95	0	121	56	23	12	7	1.61
111847--111902	14	4.3	14	76	17	66	53	23	12	10	1.69
111827--111901	24	3.1	24	86	3	98	56	20	10	13	1.66
113572--113723	76	2.0	76	100	0	304	35	19	11	32	1.88
114023--114197	91	1.9	91	89	0	269	35	16	13	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116516--116570	3	19.0	3	75	14	53	27	3	1	67	1.17
116514--116558	23	2.0	22	91	4	72	24	6	4	64	1.37
116665--116789	25	5.0	25	96	0	214	34	20	16	29	1.94
130354--130379	8	3.2	8	100	0	52	76	0	11	11	1.01
130354--130388	16	2.1	16	89	5	52	77	0	14	8	0.99
131340--131634	89	3.2	89	83	6	353	27	27	20	25	1.99
131830--131872	23	1.9	23	85	4	61	20	6	4	67	1.33
131975--132098	25	5.0	25	94	2	205	34	19	16	29	1.93
134202--134228	11	2.5	11	100	0	54	11	0	0	88	0.50

Tables:   1

The End!