genome.fa.s8049.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008049.1 Hibiscus syriacus cultivar Beakdansim tig00110542_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95889

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6463--6492	9	3.3	9	100	0	60	33	0	0	66	0.92
14587--14624	15	2.8	14	84	15	53	55	0	0	44	0.99
16982--17176	95	2.1	93	83	11	245	27	15	21	35	1.93
26210--26331	39	3.1	39	96	0	217	27	29	28	14	1.95
28644--28955	167	1.9	165	86	3	448	26	16	16	40	1.89
33575--33635	30	2.0	30	100	0	122	29	9	3	57	1.47
42060--42088	2	14.5	2	100	0	58	51	0	0	48	1.00
43959--43993	2	17.5	2	100	0	70	51	0	0	48	1.00
44115--44143	2	14.5	2	100	0	58	48	0	0	51	1.00
44496--44632	59	2.3	59	78	5	152	32	20	4	42	1.72
47643--47677	13	2.6	14	90	4	54	48	28	0	22	1.51
56548--56824	140	2.0	139	88	2	412	35	20	5	38	1.75
59260--59610	179	2.0	179	95	0	639	41	7	14	36	1.75
59558--60028	43	11.0	43	75	11	317	51	6	16	25	1.69
59573--60036	87	5.4	85	74	13	288	51	6	16	25	1.68
59739--60037	44	6.9	43	76	12	211	56	6	13	23	1.61
62585--62723	61	2.3	61	82	6	158	32	23	6	38	1.80
67575--67611	4	9.2	4	93	0	65	48	24	2	24	1.64
71163--71531	20	18.5	20	85	4	458	34	26	18	20	1.96
72202--72248	24	2.0	24	87	8	69	25	14	21	38	1.92
74742--75065	19	18.4	19	79	17	371	47	17	20	14	1.83
74770--75046	120	2.3	124	85	12	394	47	16	21	14	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74809--75097	139	2.0	144	93	5	502	47	17	20	15	1.83
75094--75176	20	4.6	19	81	15	113	14	24	18	43	1.87
75283--75319	14	2.6	14	91	0	65	45	21	0	32	1.52
75314--75385	12	6.0	12	67	23	53	56	16	1	25	1.48
75300--75372	38	1.9	38	97	0	137	53	16	1	28	1.51
77236--77292	14	3.7	14	77	20	60	45	22	21	10	1.82
77217--77309	33	2.8	33	95	0	168	47	21	20	10	1.80
77180--77314	19	7.6	19	76	16	128	45	23	19	11	1.82
77310--77438	19	7.3	19	73	17	116	9	17	28	44	1.79
77310--77401	33	2.8	34	91	3	143	8	18	28	44	1.79
77482--77860	93	4.1	93	98	1	744	46	18	12	22	1.83
77482--77860	185	2.0	185	98	1	742	46	18	12	22	1.83
79564--79653	14	5.7	14	74	23	81	42	23	25	8	1.83
79556--79670	33	3.5	33	95	0	212	45	20	24	9	1.81
79563--79675	19	6.8	18	72	23	88	43	22	24	9	1.83
79687--79741	14	3.6	14	73	21	56	9	27	23	40	1.85
79861--79931	33	2.2	33	92	0	115	47	18	22	11	1.80
80110--80164	22	2.5	22	81	0	74	20	16	40	23	1.91
80310--80503	20	9.6	20	82	5	221	19	19	25	35	1.95
80310--80503	60	3.2	60	83	0	253	19	19	25	35	1.95
80470--80565	20	4.7	20	74	3	66	21	19	22	35	1.96
80557--80608	20	2.6	20	96	0	95	21	13	26	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84696--84755	29	2.1	29	90	0	93	33	33	13	20	1.91

Tables:   1

The End!