genome.fa.s805.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000805.1 Hibiscus syriacus cultivar Beakdansim tig00001563_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101862

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54--152	42	2.4	42	89	3	146	26	34	20	19	1.96
264--313	21	2.4	21	89	0	73	20	12	32	36	1.89
330--426	21	4.6	21	70	7	72	18	11	35	35	1.87
741--775	16	2.1	17	94	5	63	22	37	17	22	1.94
714--804	20	4.7	20	77	21	88	20	35	19	24	1.96
2306--2350	20	2.2	20	84	0	54	15	20	17	46	1.84
7251--7359	20	5.6	20	70	14	75	37	11	21	30	1.88
7264--7360	40	2.5	40	80	11	110	39	11	19	29	1.87
7378--7487	20	5.4	20	83	5	114	30	15	24	30	1.96
7378--7487	40	2.7	40	81	6	132	30	15	24	30	1.96
12713--12750	20	1.9	20	100	0	76	21	15	21	42	1.89
29386--29489	21	5.0	21	87	3	149	18	39	27	14	1.89
29386--29489	41	2.5	41	90	0	163	18	39	27	14	1.89
29386--29489	20	5.1	20	88	3	154	18	39	27	14	1.89
29785--29866	34	2.4	34	97	0	155	32	15	28	23	1.95
32189--32292	41	2.5	41	92	1	163	21	37	26	14	1.92
32189--32292	21	5.1	20	79	5	100	21	37	26	14	1.92
33551--33594	18	2.4	18	100	0	88	43	20	11	25	1.85
35734--35768	17	2.1	17	100	0	70	37	22	17	22	1.94
36810--37077	116	2.3	116	80	0	311	39	17	20	22	1.92
39774--39967	36	5.3	36	75	8	153	27	18	8	45	1.79
39811--39970	72	2.2	71	82	6	189	27	18	9	45	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40869--40906	20	1.9	20	88	0	58	21	26	10	42	1.85
57463--57502	3	13.3	3	84	10	55	72	0	0	27	0.85
57457--57507	21	2.4	21	90	6	77	74	0	0	25	0.82
57457--57502	24	1.9	24	90	0	74	73	0	0	26	0.83
57736--57907	84	2.0	84	86	2	238	25	18	24	31	1.98
57946--58110	37	4.7	37	80	15	179	37	12	19	30	1.89
58050--58423	36	11.3	36	79	11	289	37	12	20	29	1.89
58081--58191	27	4.1	27	100	0	222	34	15	18	32	1.92
58015--58229	117	1.8	120	90	5	357	38	13	18	30	1.89
58203--58388	101	1.8	102	82	3	241	38	12	19	29	1.88
58362--58441	21	4.0	21	75	20	91	37	11	22	28	1.89
58607--58818	116	1.8	116	94	0	379	23	20	25	31	1.98
58960--59042	43	1.9	43	90	0	130	21	16	28	32	1.96
65527--65588	21	3.0	21	79	13	58	70	0	0	29	0.87
65525--65589	15	4.2	14	73	19	58	72	0	0	27	0.85
67510--67568	21	2.7	22	78	7	66	30	0	3	66	1.08
67519--67582	21	3.0	22	80	13	62	28	0	4	67	1.11
67759--67789	14	2.2	14	94	0	53	32	0	6	61	1.21
68609--68656	2	24.0	2	86	0	69	43	0	0	56	0.99
72977--73222	27	8.8	29	65	20	121	26	22	26	24	2.00
72923--73225	55	5.5	55	79	7	299	27	22	26	24	2.00
73010--73222	114	1.9	115	92	1	365	25	23	25	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91402--91513	41	2.7	40	87	2	107	32	19	21	26	1.97
91430--91524	21	4.6	21	88	3	140	34	15	23	26	1.95
91430--91513	41	2.0	41	100	0	168	35	16	22	25	1.95
93746--93852	19	6.2	19	70	20	90	49	17	21	11	1.78
93773--93827	14	3.6	14	73	21	56	45	20	23	10	1.82
93754--93848	33	2.9	33	95	0	163	48	18	21	11	1.79
93848--93942	19	5.3	19	82	14	105	12	17	24	45	1.83
93863--93926	33	1.9	33	93	6	112	9	17	25	48	1.76
93907--93950	19	2.3	19	88	0	61	15	20	18	45	1.85
94049--94085	14	2.6	14	91	0	65	45	21	0	32	1.52
95436--95502	21	3.2	21	68	4	55	19	20	35	23	1.95
95955--96046	19	4.7	19	83	5	112	46	21	20	10	1.81
95955--96045	39	2.3	40	88	1	130	47	20	20	10	1.80
96055--96169	19	6.2	19	74	12	87	10	20	19	50	1.76
96080--96169	39	2.5	35	80	10	94	11	21	17	50	1.77
96106--96167	20	3.2	20	76	4	81	12	22	14	50	1.77
96260--96541	94	3.1	93	90	3	437	47	18	12	22	1.81
98255--98305	19	2.7	19	84	0	66	47	17	19	15	1.83
98312--98427	19	5.8	20	86	3	146	12	18	18	50	1.78
99001--99094	21	4.5	21	81	2	109	38	17	23	21	1.93

Tables:   1

The End!