genome.fa.s8050.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008050.1 Hibiscus syriacus cultivar Beakdansim tig00110545_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45658

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
512--589	14	4.8	15	71	22	52	43	19	24	12	1.86
460--782	19	18.4	19	79	16	378	47	17	21	14	1.83
487--803	52	6.0	52	90	5	514	46	16	21	15	1.84
810--910	19	5.6	19	86	11	158	14	22	17	44	1.86
1017--1053	14	2.6	14	91	0	65	45	21	0	32	1.52
1048--1119	12	6.0	12	67	23	53	56	16	1	25	1.48
1034--1106	38	1.9	38	97	0	137	53	16	1	28	1.51
2913--3047	19	7.6	19	76	16	137	45	24	19	10	1.81
2969--3025	14	3.7	14	77	20	60	45	24	21	8	1.80
2950--3042	33	2.8	33	98	0	177	47	22	20	9	1.79
2913--3047	52	2.5	54	75	18	131	45	24	19	10	1.81
3043--3171	19	7.3	19	73	17	116	9	17	27	45	1.78
3043--3130	33	2.7	33	92	3	142	6	19	28	45	1.76
3215--3591	92	4.1	93	97	2	717	46	18	12	22	1.83
5295--5384	14	5.7	14	74	23	81	42	23	25	8	1.83
5287--5401	33	3.5	33	95	0	212	45	20	24	9	1.81
5294--5406	19	6.8	18	72	23	88	43	22	24	9	1.83
5418--5472	14	3.6	14	73	21	56	9	27	23	40	1.85
5458--5513	20	2.8	20	86	0	76	14	26	17	41	1.88
5592--5662	33	2.2	33	92	0	115	47	18	22	11	1.80
5844--5898	22	2.5	22	81	0	74	20	16	40	23	1.91
6044--6237	20	9.6	20	82	5	221	19	19	25	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6044--6237	60	3.2	60	83	0	253	19	19	25	35	1.95
6230--6306	21	3.7	20	70	13	57	27	16	23	32	1.96
6292--6343	20	2.6	20	96	0	95	21	13	26	38	1.90
10437--10496	29	2.1	29	90	0	93	33	33	13	20	1.91
28526--28570	19	2.3	20	80	3	56	35	8	0	55	1.31
32031--32480	230	2.0	228	94	1	794	45	7	7	39	1.60
32544--32588	20	2.2	20	92	7	74	53	11	17	17	1.72
32710--32756	20	2.4	19	89	10	76	55	10	17	17	1.69
32714--32761	20	2.6	18	84	15	62	56	10	14	18	1.66
34984--35048	21	3.1	21	80	6	69	40	15	29	15	1.88
35082--35147	33	2.0	33	90	0	105	28	0	48	22	1.51
36935--36982	19	2.6	19	93	3	80	31	2	10	56	1.45
37100--38859	197	8.9	199	98	1	3398	36	16	16	30	1.91
40327--40398	3	24.0	3	78	0	72	34	5	34	25	1.79
40315--40397	27	3.0	27	85	5	103	34	7	34	22	1.82
44717--44771	23	2.4	23	90	0	83	36	7	18	38	1.78
45135--45198	23	2.8	23	87	0	92	35	6	20	37	1.78
45135--45207	23	3.2	23	82	7	85	34	5	20	39	1.76
45210--45248	20	2.0	20	89	0	60	25	15	10	48	1.76

Tables:   1

The End!