Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008053.1 Hibiscus syriacus cultivar Beakdansim tig00110548_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6772376
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 16 of 32
Found at i:3031521 original size:105 final size:108
Alignment explanation
Indices: 3031354--3031599 Score: 272
Period size: 105 Copynumber: 2.3 Consensus size: 108
3031344 TTTTTAAATT
* *
3031354 ATATATGATATATTTTAAAAAATGTTTTCAAAATTATATAGTTTTCAAAAATATTTTTAAAACTA
1 ATATATGATATATTTTAAAAAATGTTTTCAAAATTATATAGTTTACAAAAATATTTTAAAAACTA
* *
3031419 TATACTATAT-AAT-TTTTCAAA-ATGA-TTTCAAAATTATATA
66 TATAATATATAAATGTTTTCAAACAT-ATTTTCAAAACTATATA
* * * * *
3031459 ATATAT-ATATGTTTTCAAAATATTTTTTTAAAACTATATATA-TTTAC-AAAATGTTTTAAAAA
1 ATATATGATATATTTT-AAAAAATGTTTTCAAAA-T-TATATAGTTTACAAAAATATTTTAAAAA
3031521 CTATATAATATATAAATGTTTTCAAACATATTTTCAAAACTATATA
63 CTATATAATATATAAATGTTTTCAAACATATTTTCAAAACTATATA
* * * * *
3031567 TTATATGTGTGTGTTTTTAAAAATGTTTTCAAA
1 ATATATG-ATATATTTTAAAAAATGTTTTCAAA
3031600 CTATACACAA
Statistics
Matches: 116, Mismatches: 16, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
104 8 0.07
105 45 0.39
106 8 0.07
107 15 0.13
108 21 0.18
109 12 0.10
110 7 0.06
ACGTcount: A:0.43, C:0.06, G:0.05, T:0.46
Consensus pattern (108 bp):
ATATATGATATATTTTAAAAAATGTTTTCAAAATTATATAGTTTACAAAAATATTTTAAAAACTA
TATAATATATAAATGTTTTCAAACATATTTTCAAAACTATATA
Found at i:3031537 original size:27 final size:29
Alignment explanation
Indices: 3031483--3031542 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
3031473 TCAAAATATT
* *
3031483 TTTTTAAAACTATATATATTTACAAAATG
1 TTTTAAAAACTATATATATATACAAAATG
*
3031512 TTTTAAAAACTATATA-ATATA-TAAATG
1 TTTTAAAAACTATATATATATACAAAATG
3031539 TTTT
1 TTTT
3031543 CAAACATATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 9 0.32
28 4 0.14
29 15 0.54
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (29 bp):
TTTTAAAAACTATATATATATACAAAATG
Found at i:3031540 original size:69 final size:69
Alignment explanation
Indices: 3031422--3031567 Score: 199
Period size: 69 Copynumber: 2.1 Consensus size: 69
3031412 AAAACTATAT
* * * *
3031422 ACTATATA-ATTTTTCAAAATGATTTCAAAATTATATAATATATATATGTTTTCAAA-ATATTTT
1 ACTATATATATTTTACAAAATGATTTAAAAACTATATAATATATAAATGTTTTCAAACATA--TT
*
3031485 TTTAAA
64 TTCAAA
*
3031491 ACTATATATA-TTTACAAAATGTTTTAAAAACTATATAATATATAAATGTTTTCAAACATATTTT
1 ACTATATATATTTTACAAAATGATTTAAAAACTATATAATATATAAATGTTTTCAAACATATTTT
3031555 CAAA
66 CAAA
3031559 ACTATATAT
1 ACTATATAT
3031568 TATATGTGTG
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
68 16 0.23
69 49 0.71
70 4 0.06
ACGTcount: A:0.45, C:0.08, G:0.03, T:0.45
Consensus pattern (69 bp):
ACTATATATATTTTACAAAATGATTTAAAAACTATATAATATATAAATGTTTTCAAACATATTTT
CAAA
Found at i:3031616 original size:2 final size:2
Alignment explanation
Indices: 3031609--3031650 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
3031599 ACTATACACA
3031609 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3031651 GATAAAATAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3032478 original size:165 final size:165
Alignment explanation
Indices: 3032269--3033643 Score: 1190
Period size: 165 Copynumber: 8.3 Consensus size: 165
3032259 GGCTATTTTA
* * *
3032269 TAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGTAGATTACCCTT
1 TAAATGATGTGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTT
* ** ** *
3032334 CTCGACTTAAGTTATGCTGCAAATGATGTTCCTTTAAAGCTGAGTATAATCGAACTCGAGGGTC-
66 CTCGACTTAAGTTATGCTGCAAATGATGTGCC-TTGGAGCTGAGCGTAATCGAACTCGAAGGTCT
* *
3032398 TTTGGCAGATAGCCCTTCTCGACTTAAGCTATACTG
130 TTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTG
* * *
3032434 TAAATGATGTGCCTCAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGG-AGACAGATAACCCT
1 TAAATGATGTGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGTTGGCAGATAACCCT
* * * * * **
3032498 TCTAGCCTTGAGTTATGTTGTAAATGATGGTTTGCCTCT-GAGCTGAAATGTAATCGAACTCGAA
65 TCTCGACTTAAGTTATGCTGCAAATGAT-G--TGCCT-TGGAGCTG-AGCGTAATCGAACTCGAA
* * *
3032562 GGTATTCGGTTGGCACATAACCCTTCTCGACTTAAGTTATGCTG
125 GGTCTT---TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTG
* * * * *
3032606 CAAATGATATGCCTTAGAGCTGAGCGTAGTAGAACTCGAAGGTCTTT-TTTGACAGATAACCCTT
1 TAAATGATGTGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTT
* * * * * * ** *
3032670 CTAGCCTTGAGTTATGCTGTAAATGATGTGCCATCGAAGCTGAGTATAATCGAACTCGAGGGTC-
66 CTCGACTTAAGTTATGCTGCAAATGATGTGCC-TTGGAGCTGAGCGTAATCGAACTCGAAGGTCT
* *
3032734 TTTGGCAGATATCCCTTCTCGACTTAAGCTATACTG
130 TTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTG
* * ** * * *
3032770 CAAATGAGGCACCTTGGAGATGAGCGTAATCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTT
1 TAAATGATGTGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTT
* * * * * *
3032835 TTCGATTTAAGTTATGCTGCAAATGATATGCCTTGGAGCTTAACGTAGTCGAACTCGAAGGTCTT
66 CTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAATCGAACTCGAAGGTC--
* * * * * * *
3032900 TTGTTGGCAAATAGCCTTTCTTGCCTTGAGCTATGTTG
129 TT-TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTG
* * * * * * * *
3032938 CAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTC--T--TTGGCATATAGCCCT
1 TAAATGATGTGCCTTAG-AGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCT
* ** * *
3032999 TCTCGACTTAAGCTATGCTGCAAATGATGCACCTTGGAGCTGAGCGTAGTCGAACTTGAAGGTCT
65 TCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAATCGAACTCGAAGGTCT
* * * * *
3033064 TTTGGTCACAGATAACCCTTATAGCCTTGAGTTATGCTG
130 TTTGG---CAGATAACCCTTCTCGACTTAAGCTATGCTG
* * * * * * *
3033103 TAAATGATGTGCCCTCAAAGTTGAGTGTAATCGAACTGGAGGGTC--T--TTGGCAG----CCCT
1 TAAATGATGTG-CCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCT
* *
3033160 TCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCT
65 TCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAATCGAACTCGAAGGTC-
* * * *
3033225 TTGGTTAGCAGATAACCCTTATCGACTTAAGTTATACTG
129 TT--TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTG
* * * * * *
3033264 TAAATGATGTGCCGTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGG-TGACAGATAACCT
1 TAAATGATGTGCCTTAG-AGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGTTGGCAGATAACCC
* * * * * * * * * **
3033328 TTCTTGCCTTGAGTTATGCTGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTAGGGGGT
64 TTCTCGACTTAAGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAATCGAACTCGAAGGT
* *
3033393 C-TTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTA
128 CTTTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTG
* * * *
3033430 CAAATGATGTGCCGTTA-AGCTGAGCGTAGTCGAACTCAAAGGTC-TTGTATTGGCAGACAACCC
1 TAAATGATGTGCC-TTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTG-GTTGGCAGATAACCC
* * * * * *
3033493 TTCTAGACTTAAGTTGTGCTGCAAATGATATGCCTTAGAGCTGAGCGTAGTTGAACTCGAAGGTC
64 TTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAATCGAACTCGAAGGTC
* * * **
3033558 TTTTGGTCACAGATAACCCTTCTAGCCTTGATTTATGCTG
129 TTTTGG---CAGATAACCCTTCTCGACTTAAGCTATGCTG
* *
3033598 TGAATGATGTGCCTTAGAGCTGAGCTTAGTCGAACTCGAAGGTCTT
1 TAAATGATGTGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTT
3033644 GACTGACAGA
Statistics
Matches: 988, Mismatches: 176, Indels: 88
0.79 0.14 0.07
Matches are distributed among these distances:
160 2 0.00
161 127 0.13
162 6 0.01
163 5 0.01
164 121 0.12
165 320 0.32
166 49 0.05
167 13 0.01
168 144 0.15
169 60 0.06
170 27 0.03
171 43 0.04
172 71 0.07
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.31
Consensus pattern (165 bp):
TAAATGATGTGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTT
CTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAATCGAACTCGAAGGTCTT
TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTG
Found at i:3032526 original size:84 final size:82
Alignment explanation
Indices: 3032270--3033643 Score: 1169
Period size: 84 Copynumber: 16.5 Consensus size: 82
3032260 GCTATTTTAT
* * *
3032270 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGTAGATTACCCTTC
1 AAATGATGTGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG-T-GCAGATAACCCTTC
3032335 TCGACTTAAGTTATGCTGC
64 TCGACTTAAGTTATGCTGC
* * ** * * *
3032354 AAATGATGTTCCTTTAAAGCTGAGTATAATCGAACTCGAGGGTCTTT-G-GCAGATAGCCCTTCT
1 AAATGATGTGCC-TTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTGCAGATAACCCTTCT
* * *
3032417 CGACTTAAGCTATACTGT
65 CGACTTAAGTTATGCTGC
* *
3032435 AAATGATGTGCCTCAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGAGACAGATAACCCTTC
1 AAATGATGTGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGTG-CAGATAACCCTTC
* * * * *
3032500 TAGCCTTGAGTTATGTTGT
64 TCGACTTAAGTTATGCTGC
** * * * *
3032519 AAATGATGGTTTGCCTCT-GAGCTGAAATGTAATCGAACTCGAAGGTATTCGGTTGGCACATAAC
1 AAATGAT-G--TGCCT-TAGAGCTG-AGCGTAGTCGAACTCGAAGGTCTTTGG-T-GCAGATAAC
3032583 CCTTCTCGACTTAAGTTATGCTGC
59 CCTTCTCGACTTAAGTTATGCTGC
* * **
3032607 AAATGATATGCCTTAGAGCTGAGCGTAGTAGAACTCGAAGGTCTTTTTTGACAGATAACCCTTCT
1 AAATGATGTGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTG-CAGATAACCCTTCT
* * * *
3032672 AGCCTTGAGTTATGCTGT
65 CGACTTAAGTTATGCTGC
* * ** * * *
3032690 AAATGATGTGCCATCGAAGCTGAGTATAATCGAACTCGAGGGTCTTT-G-GCAGATATCCCTTCT
1 AAATGATGTGCCTTAG-AGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTGCAGATAACCCTTCT
* *
3032753 CGACTTAAGCTATACTGC
65 CGACTTAAGTTATGCTGC
* ** * * * *
3032771 AAATGAGGCACCTTGGAGATGAGCGTAATCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTT
1 AAATGATGTGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG-T-GCAGATAACCCTTC
*
3032836 TCGATTTAAGTTATGCTGC
64 TCGACTTAAGTTATGCTGC
* * * * * * * *
3032855 AAATGATATGCCTTGGAGCTTAACGTAGTCGAACTCGAAGGTCTTTTGTTGGCAAATAGCCTTTC
1 AAATGATGTGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGT-GCAGATAACCCTTC
* * * * *
3032920 TTGCCTTGAGCTATGTTGC
64 TCGACTTAAGTTATGCTGC
* * * * * * *
3032939 AAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTT-G-GCATATAGCCCTTCT
1 AAATGATGTGCCTTAG-AGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTGCAGATAACCCTTCT
*
3033002 CGACTTAAGCTATGCTGC
65 CGACTTAAGTTATGCTGC
** * * * *
3033020 AAATGATGCACCTTGGAGCTGAGCGTAGTCGAACTTGAAGGTCTTTTGGTCACAGATAACCCTTA
1 AAATGATGTGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGT-GCAGATAACCCTTC
* * * *
3033085 TAGCCTTGAGTTATGCTGT
64 TCGACTTAAGTTATGCTGC
* * * * * * *
3033104 AAATGATGTGCCCTCAAAGTTGAGTGTAATCGAACTGGAGGGTCTTT-G-GCAG----CCCTTCT
1 AAATGATGTG-CCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTGCAGATAACCCTTCT
*
3033163 CGACTTAAGCTATGCTGC
65 CGACTTAAGTTATGCTGC
* *
3033181 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTAGCAGATAACCCTTA
1 AAATGATGTGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG-T-GCAGATAACCCTTC
* *
3033246 TCGACTTAAGTTATACTGT
64 TCGACTTAAGTTATGCTGC
* * * * *
3033265 AAATGATGTGCCGTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGGTGACAGATAACCTTT
1 AAATGATGTGCCTTAG-AGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGTG-CAGATAACCCTT
* * * *
3033330 CTTGCCTTGAGTTATGCTGT
63 CTCGACTTAAGTTATGCTGC
* * * * * * ** *
3033350 AAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTAGGGGGTCTTT-G-GCAGATAGCCCTTCT
1 AAATGATGTGCCTTAG-AGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTGCAGATAACCCTTCT
* *
3033413 CGACTTAAGCTATGCTAC
65 CGACTTAAGTTATGCTGC
* ** *
3033431 AAATGATGTGCCGTTA-AGCTGAGCGTAGTCGAACTCAAAGGTCTTGTATTGGCAGACAACCCTT
1 AAATGATGTGCC-TTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTT-TGGT-GCAGATAACCCTT
* *
3033495 CTAGACTTAAGTTGTGCTGC
63 CTCGACTTAAGTTATGCTGC
* * *
3033515 AAATGATATGCCTTAGAGCTGAGCGTAGTTGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTC
1 AAATGATGTGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGT-GCAGATAACCCTTC
* * * * *
3033580 TAGCCTTGATTTATGCTGT
64 TCGACTTAAGTTATGCTGC
* *
3033599 GAATGATGTGCCTTAGAGCTGAGCTTAGTCGAACTCGAAGGTCTT
1 AAATGATGTGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTT
3033644 GACTGACAGA
Statistics
Matches: 1026, Mismatches: 220, Indels: 89
0.77 0.16 0.07
Matches are distributed among these distances:
76 28 0.03
77 30 0.03
80 101 0.10
81 159 0.15
82 6 0.01
83 49 0.05
84 397 0.39
85 184 0.18
86 5 0.00
87 15 0.01
88 51 0.05
89 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.31
Consensus pattern (82 bp):
AAATGATGTGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTGCAGATAACCCTTCTC
GACTTAAGTTATGCTGC
Found at i:3033022 original size:249 final size:245
Alignment explanation
Indices: 3032280--3033643 Score: 1233
Period size: 249 Copynumber: 5.5 Consensus size: 245
3032270 AAATGATGTG
* ** *
3032280 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGTTGGTAGATTACCCTTCTCGACTTAA
1 CCTTGGAGCTGAGCGTAATCGAACTCGAAGGTCTTTTGG-TGACAGATAACCCTTCTCGACTTAA
* * ** *
3032344 GTTATGCTGCAAATGATGTTCCTTTAAAGCTGAGTATAATCGAACTCGAGGGTCTTTGGCAGATA
65 GTTATGCTGCAAATGATATGCC-TTAAAGCTGAGCGTAATCGAACTCGAAGGTCTTTGGCAGATA
* *
3032409 GCCCTTCTCGACTTAAGCTATACTGTAAATGATGTG-CCTC-AGAGCTGAGCGTAGTCGAACTCG
129 GCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCCTCGA-AGCTGAGCGTAGTCGAACTCG
* * * * * **
3032472 AAGGTCTTTTGGAGACAGATAACCCTTCTAGCCTTGAGTTATGTTGTAAATGATGGTTTG
193 AAGGTC-TTT-G-G-CAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGA-GG--CA
** * * * *
3032532 CCTCT-GAGCTGAAATGTAATCGAACTCGAAGGT-ATTCGGTTGGCACATAACCCTTCTCGACTT
1 CCT-TGGAGCTG-AGCGTAATCGAACTCGAAGGTCTTTTGG-TGACAGATAACCCTTCTCGACTT
* * * *
3032595 AAGTTATGCTGCAAATGATATGCCTTAGAGCTGAGCGTAGTAGAACTCGAAGGTCTTTTTTGACA
63 AAGTTATGCTGCAAATGATATGCCTTAAAGCTGAGCGTAATCGAACTCGAAGGTC---TTTGGCA
* * * * * * * ** *
3032660 GATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCATCGAAGCTGAGTATAATCGAAC
125 GATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCCTCGAAGCTGAGCGTAGTCGAAC
* * * *
3032725 TCGAGGGTCTTTGGCAGATATCCCTTCTCGACTTAAGCTATACTGCAAATGAGGCA
190 TCGAAGGTCTTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGAGGCA
* * * *
3032781 CCTTGGAGATGAGCGTAATCGAACTCGAAGGTC-TTTGGTTGGCAGATAACCCTTTTCGATTTAA
1 CCTTGGAGCTGAGCGTAATCGAACTCGAAGGTCTTTTGG-TGACAGATAACCCTTCTCGACTTAA
** * * * *
3032845 GTTATGCTGCAAATGATATGCCTTGGAGCTTAACGTAGTCGAACTCGAAGGTCTTTTGTTGGCAA
65 GTTATGCTGCAAATGATATGCCTTAAAGCTGAGCGTAATCGAACTCGAAGGTC---T-TTGGCAG
* * * * * * *
3032910 ATAGCCTTTCTTGCCTTGAGCTATGTTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACT
126 ATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCCTCGAAGCTGAGCGTAGTCGAACT
* * * * *
3032975 CGAGGGTCTTTGGCATATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGCA
191 CGAAGGTCTTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGAGGCA
* * * * * * *
3033030 CCTTGGAGCTGAGCGTAGTCGAACTTGAAGGTCTTTTGGTCACAGATAACCCTTATAGCCTTGAG
1 CCTTGGAGCTGAGCGTAATCGAACTCGAAGGTCTTTTGGTGACAGATAACCCTTCTCGACTTAAG
* * * * * * *
3033095 TTATGCTGTAAATGATGTGCCCTCAAAGTTGAGTGTAATCGAACTGGAGGGTCTTTGGC----AG
66 TTATGCTGCAAATGATATG-CCTTAAAGCTGAGCGTAATCGAACTCGAAGGTCTTTGGCAGATAG
* *
3033156 CCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAA
130 CCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCCTCGAAGCTGAGCGTAGTCGAACTCGAA
* * *
3033220 GGTCTTTGGTTAGCAGATAACCCTTATCGACTTAAGTTATACTGTAAATGATGTGC-
195 GGTCTTT-G---GCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGA-G-GCA
* * * * * * * *
3033276 CGTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGGTGACAGATAACCTTTCTTGCCTTGAG
1 CCTTGGAGCTGAGCGTAATCGAACTCGAAGGTCTTTTGGTGACAGATAACCCTTCTCGACTTAAG
* ** * * **
3033341 TTATGCTGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTAGGGGGTCTTTGGCAGATAG
66 TTATGCTGCAAATGATATG-CCTTAAAGCTGAGCGTAATCGAACTCGAAGGTCTTTGGCAGATAG
* * * *
3033406 CCCTTCTCGACTTAAGCTATGCTACAAATGATGTGCCGT-TAAGCTGAGCGTAGTCGAACTCAAA
130 CCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCCTCGAAGCTGAGCGTAGTCGAACTCGAA
* * * ****
3033470 GGTCTTGTATTGGCAGACAACCCTTCTAGACTTAAGTTGTGCTGCAAATGATATG
195 GGTC---T-TTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGAGGCA
* * * * * * * *
3033525 CCTTAGAGCTGAGCGTAGTTGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAT
1 CCTTGGAGCTGAGCGTAATCGAACTCGAAGGTCTTTTGGTGACAGATAACCCTTCTCGACTTAAG
** * * * *
3033590 TTATGCTGTGAATGATGTGCCTTAGAGCTGAGCTTAGTCGAACTCGAAGGTCTT
66 TTATGCTGCAAATGATATGCCTTAAAGCTGAGCGTAATCGAACTCGAAGGTCTT
3033644 GACTGACAGA
Statistics
Matches: 931, Mismatches: 152, Indels: 62
0.81 0.13 0.05
Matches are distributed among these distances:
241 31 0.03
242 33 0.04
245 33 0.04
246 114 0.12
247 3 0.00
248 126 0.14
249 258 0.28
250 123 0.13
251 4 0.00
252 64 0.07
253 69 0.07
254 3 0.00
255 43 0.05
256 26 0.03
257 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.31
Consensus pattern (245 bp):
CCTTGGAGCTGAGCGTAATCGAACTCGAAGGTCTTTTGGTGACAGATAACCCTTCTCGACTTAAG
TTATGCTGCAAATGATATGCCTTAAAGCTGAGCGTAATCGAACTCGAAGGTCTTTGGCAGATAGC
CCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCCTCGAAGCTGAGCGTAGTCGAACTCGAAG
GTCTTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGAGGCA
Found at i:3033415 original size:411 final size:408
Alignment explanation
Indices: 3032328--3033475 Score: 1464
Period size: 411 Copynumber: 2.8 Consensus size: 408
3032318 TTGGTAGATT
* * ** **
3032328 ACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTTCCTTTAAAGCTGAGTATAATCGAACTCGA
1 ACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTACC-TTGGAGCTGAGCGTAATCGAACTCGA
* * * *
3032393 GGGTCTTT-G--GCAGATAGCCCTTCTCGACTTAAGCTATACTGTAAATGATGTGCCTC-AGAGC
65 AGGTCTTTGGTTGCAGATAACCCTTATCGACTTAAGTTATACTGTAAATGATGTGCCTCGA-AGC
* * *
3032454 TGAGCGTAGTCGAACTCGAAGGTCTTTTGGAGACAGATAACCCTTCTAGCCTTGAGTTATGTTGT
129 TGAGCGTAGTCGAACTCGAAGGTCTTTTGGTGACAGATAACCTTTCTTGCCTTGAGTTATGTTGT
* * *** * *
3032519 AAATGATGGTTTG-CCTCTG-AGCTGAAATGTAATCGAACTCGAAGGTATTCGGTTGGCACATAA
194 AAATGA---TATGCCCTC-GAAGCTG-AGTGTAATCGAACT---AGGGGGTC-TTTGGCACATAG
* * *
3032582 CCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCTTAGAGCTGAGCGTAGTAGAACTCGAAG
250 CCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTT-GAGCTGAGCGTAGTCGAACTCGAAG
* * * *
3032647 GTCTTTTTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCATCGAAGCTG
314 GTCTTTTGTCACAGATAACCCTTATAGCCTTGAGTTATGCTGTAAATGATGTGCCATCAAAGCTG
3032712 AGTATAATCGAACTCGAGGGTCTTTGGCAG
379 AGTATAATCGAACTCGAGGGTCTTTGGCAG
* * * *
3032742 ATATCCCTTCTCGACTTAAGCTATACTGCAAATGAGGCACCTTGGAGATGAGCGTAATCGAACTC
1 --A-CCCTTCTCGACTTAAGCTATGCTGCAAATGATGTACCTTGGAGCTGAGCGTAATCGAACTC
* * * * * * *
3032807 GAAGGTCTTTGGTTGGCAGATAACCCTTTTCGATTTAAGTTATGCTGCAAATGATATGCCTTGGA
63 GAAGGTCTTTGGTT-GCAGATAACCCTTATCGACTTAAGTTATACTGTAAATGATGTGCCTCGAA
* * * * * * *
3032872 GCTTAACGTAGTCGAACTCGAAGGTCTTTTGTTGGCAAATAGCCTTTCTTGCCTTGAGCTATGTT
127 GCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTGACAGATAACCTTTCTTGCCTTGAGTTATGTT
* * * * *
3032937 GCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCATATAGCCCTTCT
192 GTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTAGGGGGTCTTTGGCACATAGCCCTTCT
** *
3033002 CGACTTAAGCTATGCTGCAAATGATGCACCTTGGAGCTGAGCGTAGTCGAACTTGAAGGTCTTTT
257 CGACTTAAGCTATGCTGCAAATGATGTGCCTT-GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTT
* * *
3033067 GGTCACAGATAACCCTTATAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCAAAGTTGAGTGTA
321 -GTCACAGATAACCCTTATAGCCTTGAGTTATGCTGTAAATGATGTGCCATCAAAGCTGAGTATA
*
3033132 ATCGAACTGGAGGGTCTTTGGCAG
385 ATCGAACTCGAGGGTCTTTGGCAG
* *
3033156 -CCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAA
1 ACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTACCTTGGAGCTGAGCGTAATCGAACTCGAA
3033220 GGTCTTTGGTTAGCAGATAACCCTTATCGACTTAAGTTATACTGTAAATGATGTGCCGTCGAAGC
66 GGTCTTTGGTT-GCAGATAACCCTTATCGACTTAAGTTATACTGTAAATGATGTGCC-TCGAAGC
* * *
3033285 TGAGTGTAATCGAACTCGAAGGTCTTTTGGTGACAGATAACCTTTCTTGCCTTGAGTTATGCTGT
129 TGAGCGTAGTCGAACTCGAAGGTCTTTTGGTGACAGATAACCTTTCTTGCCTTGAGTTATGTTGT
*
3033350 AAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTAGGGGGTCTTTGGCAGATAGCCCTTCTCG
194 AAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTAGGGGGTCTTTGGCACATAGCCCTTCTCG
* * *
3033415 ACTTAAGCTATGCTACAAATGATGTGCCGTTAAGCTGAGCGTAGTCGAACTCAAAGGTCTT
259 ACTTAAGCTATGCTGCAAATGATGTGCC-TTGAGCTGAGCGTAGTCGAACTCGAAGGTCTT
3033476 GTATTGGCAG
Statistics
Matches: 630, Mismatches: 91, Indels: 27
0.84 0.12 0.04
Matches are distributed among these distances:
410 109 0.17
411 172 0.27
412 2 0.00
413 74 0.12
414 83 0.13
416 29 0.05
417 50 0.08
418 9 0.01
420 102 0.16
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.30
Consensus pattern (408 bp):
ACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTACCTTGGAGCTGAGCGTAATCGAACTCGAA
GGTCTTTGGTTGCAGATAACCCTTATCGACTTAAGTTATACTGTAAATGATGTGCCTCGAAGCTG
AGCGTAGTCGAACTCGAAGGTCTTTTGGTGACAGATAACCTTTCTTGCCTTGAGTTATGTTGTAA
ATGATATGCCCTCGAAGCTGAGTGTAATCGAACTAGGGGGTCTTTGGCACATAGCCCTTCTCGAC
TTAAGCTATGCTGCAAATGATGTGCCTTGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGTCAC
AGATAACCCTTATAGCCTTGAGTTATGCTGTAAATGATGTGCCATCAAAGCTGAGTATAATCGAA
CTCGAGGGTCTTTGGCAG
Found at i:3037650 original size:21 final size:22
Alignment explanation
Indices: 3037612--3037655 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
3037602 ATAAGAATAA
*
3037612 TAAAAAAATAATATAAAT-TAT
1 TAAAAAAATAATACAAATATAT
3037633 TAAAAAAATTAA-ACAAATATAT
1 TAAAAAAA-TAATACAAATATAT
3037655 T
1 T
3037656 GTAAAATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (22 bp):
TAAAAAAATAATACAAATATAT
Found at i:3039144 original size:25 final size:25
Alignment explanation
Indices: 3039099--3039147 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
3039089 ATAATATATA
3039099 TATATAAGAATATTTTCCAAAAGTC
1 TATATAAGAATATTTTCCAAAAGTC
*
3039124 TATATAATATATATTTT-CAAAAGT
1 TATATAAGA-ATATTTTCCAAAAGT
3039148 ATTTTTAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.45, C:0.08, G:0.06, T:0.41
Consensus pattern (25 bp):
TATATAAGAATATTTTCCAAAAGTC
Found at i:3039162 original size:34 final size:33
Alignment explanation
Indices: 3039089--3039454 Score: 154
Period size: 34 Copynumber: 10.3 Consensus size: 33
3039079 GAAATAAACA
*
3039089 ATAATATATATATAT-AAGAATATTTTCCAAAAGTCTAT
1 ATAATATATAT-TTTCAA-AATATTTT--AAAA-T-TAT
*
3039127 ATAATATATATTTTCAAAAGTATTTTTAAATTAT
1 ATAATATATATTTTCAAAA-TATTTTAAAATTAT
* * * *
3039161 ATATTATATATTTTAAAAAATGTTTTCAAA--AT
1 ATAATATATATTTT-CAAAATATTTTAAAATTAT
* *
3039193 -T-ATATA-GTTTTCAAAAATATTTTAAAACTAT
1 ATAATATATATTTTC-AAAATATTTTAAAATTAT
* * *
3039224 ATACTATATAATTTCAAAATGATTTCAAAATTAT
1 ATAATATATATTTTCAAAAT-ATTTTAAAATTAT
3039258 ATAGTATATATATGTTTTCAAAATATTTTTTTAAAACTATAT
1 ATA--ATATATA--TTTTCAAAATA---TTTTAAAA-T-TAT
* * * * * *
3039300 ATATTTACAAAATGTTTTAAAA-ATATATATAA-TAT
1 ATA-ATA-TATAT-TTTCAAAATAT-TTTAAAATTAT
*
3039335 ATATATATATATATTCAAAAATATTTTAAAAAATATAT
1 ATA-ATATATATTTTC-AAAATATTTTAAA--AT-TAT
* * *
3039373 ATTATATTTATTTTCAAAATATTTTAAAAACTAT
1 ATAATATATATTTTCAAAATATTTT-AAAATTAT
*
3039407 ATAATATATAAATGTTTTCAAACATATTTTCAAAACTAT
1 ATAATATAT--A--TTTTCAAA-ATATTTT-AAAATTAT
*
3039446 ATATTATAT
1 ATAATATAT
3039455 GTATGTTTTT
Statistics
Matches: 254, Mismatches: 40, Indels: 67
0.70 0.11 0.19
Matches are distributed among these distances:
29 16 0.06
30 4 0.02
31 3 0.01
32 3 0.01
33 11 0.04
34 63 0.25
35 17 0.07
36 21 0.08
37 19 0.07
38 46 0.18
39 23 0.09
40 9 0.04
41 11 0.04
42 8 0.03
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (33 bp):
ATAATATATATTTTCAAAATATTTTAAAATTAT
Found at i:3039208 original size:28 final size:28
Alignment explanation
Indices: 3039163--3039262 Score: 78
Period size: 29 Copynumber: 3.4 Consensus size: 28
3039153 TAAATTATAT
*
3039163 ATTATATA-TTTTAAAAAATGTTTTCAAA
1 ATTATATAGTTTT-CAAAATGTTTTCAAA
*
3039191 ATTATATAGTTTTCAAAAATATTTT-AAA
1 ATTATATAGTTTTC-AAAATGTTTTCAAA
* *
3039219 ACTATATACTATATAATTTCAAAATGATTTCAAA
1 A-T-TATA-TA-GT--TTTCAAAATGTTTTCAAA
3039253 ATTATATAGT
1 ATTATATAGT
3039263 ATATATATGT
Statistics
Matches: 57, Mismatches: 6, Indels: 16
0.72 0.08 0.20
Matches are distributed among these distances:
28 12 0.21
29 14 0.25
30 5 0.09
31 4 0.07
32 5 0.09
33 9 0.16
34 8 0.14
ACGTcount: A:0.46, C:0.06, G:0.04, T:0.44
Consensus pattern (28 bp):
ATTATATAGTTTTCAAAATGTTTTCAAA
Found at i:3039250 original size:62 final size:63
Alignment explanation
Indices: 3039131--3039262 Score: 187
Period size: 63 Copynumber: 2.1 Consensus size: 63
3039121 GTCTATATAA
* * * * * *
3039131 TATATA-TTTTCAAAAGTATTTTTAAATTATATATTATATATTTTAAAAAATGTTTTCAAAAT
1 TATATAGTTTTCAAAAATATTTTAAAACTATATACTATATAATTTAAAAAATGATTTCAAAAT
*
3039193 TATATAGTTTTCAAAAATATTTTAAAACTATATACTATATAATTT-CAAAATGATTTCAAAAT
1 TATATAGTTTTCAAAAATATTTTAAAACTATATACTATATAATTTAAAAAATGATTTCAAAAT
3039255 TATATAGT
1 TATATAGT
3039263 ATATATATGT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
62 29 0.47
63 33 0.53
ACGTcount: A:0.45, C:0.05, G:0.04, T:0.46
Consensus pattern (63 bp):
TATATAGTTTTCAAAAATATTTTAAAACTATATACTATATAATTTAAAAAATGATTTCAAAAT
Found at i:3039335 original size:102 final size:99
Alignment explanation
Indices: 3039124--3039338 Score: 235
Period size: 102 Copynumber: 2.1 Consensus size: 99
3039114 TCCAAAAGTC
**
3039124 TATATAATATATATTTTCAAAAGTATTTTTAAATTATATATTATATATTTTAAAAAATGTTTTCA
1 TATATAATATATATTTTCAAAAGTATTTCAAAATTATATATTATATATTTTAAAAAATGTTTTCA
* *
3039189 AAATTATATAGTTTTCAAAAATATTTTAAAACTA
66 AAACTATATAGTTTTCAAAAATATTTTAAAAATA
*
3039223 TATACT-ATATA-A-TTTCAAAA-TGATTTCAAAATTATATAGTATATATATGTTTTCAAAATAT
1 TATA-TAATATATATTTTCAAAAGT-ATTTCAAAATTATATA-T-TATATA--TTTT-AAAAAAT
* * *
3039284 TTTTTTAAAACTATATA-TATTT-ACAAAATGTTTTAAAAATA
59 GTTTTCAAAACTATATAGT-TTTCA-AAAATATTTTAAAAATA
3039325 TATATAATATATAT
1 TATATAATATATAT
3039339 ATATATATAT
Statistics
Matches: 96, Mismatches: 8, Indels: 19
0.78 0.07 0.15
Matches are distributed among these distances:
96 1 0.01
97 22 0.23
98 2 0.02
99 15 0.16
100 1 0.01
101 7 0.07
102 47 0.49
103 1 0.01
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.47
Consensus pattern (99 bp):
TATATAATATATATTTTCAAAAGTATTTCAAAATTATATATTATATATTTTAAAAAATGTTTTCA
AAACTATATAGTTTTCAAAAATATTTTAAAAATA
Found at i:3039374 original size:75 final size:73
Alignment explanation
Indices: 3039193--3039454 Score: 227
Period size: 75 Copynumber: 3.5 Consensus size: 73
3039183 TTTTCAAAAT
* * *
3039193 TATATAGTTTTCAAAAATATTTT-AAAACTATATACTATATAATTT-CAAAATGATTTCAAAATT
1 TATATA-TTTTCAAAAATATTTTAAAAAATATATA-T-TAT-ATTTACAAAATGTTTTAAAAATT
*
3039256 ATAT-A-GTATA
62 ATATAATATATA
* ** *
3039266 TATATGTTTTC-AAAATATTTTTTTAAAA-CTATA-TATATTTACAAAATGTTTTAAAAATATAT
1 TATATATTTTCAAAAATA-TTTTAAAAAATATATATTATATTTACAAAATGTTTTAAAAAT-TAT
3039328 ATAATATATA
64 ATAATATATA
*
3039338 TATATATATATTCAAAAATATTTTAAAAAATATATATTATATTTATTTTCAAAATATTTTAAAAA
1 TATATAT-T-TTCAAAAATATTTTAAAAAATATATATTATATTTA----CAAAATGTTTTAAAAA
*
3039403 CTATATAATATATA
60 TTATATAATATATA
* * * *
3039417 -A-ATGTTTTCAAACATATTTTCAAAACTATATATTATAT
1 TATATATTTTCAAAAATATTTTAAAAAATATATATTATAT
3039455 GTATGTTTTT
Statistics
Matches: 157, Mismatches: 17, Indels: 28
0.78 0.08 0.14
Matches are distributed among these distances:
68 4 0.03
69 18 0.11
70 5 0.03
71 7 0.04
72 23 0.15
73 9 0.06
74 11 0.07
75 39 0.25
76 9 0.06
77 3 0.02
78 1 0.01
79 13 0.08
80 15 0.10
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (73 bp):
TATATATTTTCAAAAATATTTTAAAAAATATATATTATATTTACAAAATGTTTTAAAAATTATAT
AATATATA
Found at i:3039461 original size:39 final size:38
Alignment explanation
Indices: 3039295--3039463 Score: 171
Period size: 39 Copynumber: 4.3 Consensus size: 38
3039285 TTTTTAAAAC
* * *
3039295 TATATATATTTACAAAATGTTTTAAAAATATATATAATATA
1 TATATATATTTTCAAAATATTTTAAAAA-CTATAT-AT-TA
*
3039336 TATATATATATATTCAAAAATATTTTAAAAAATATATATTA
1 TATATATAT-T-TTC-AAAATATTTTAAAAACTATATATTA
*
3039377 TAT-T-TATTTTCAAAATATTTTAAAAACTATATAATA
1 TATATATATTTTCAAAATATTTTAAAAACTATATATTA
* * *
3039413 TATAAATGTTTTCAAACATATTTTCAAAACTATATATTA
1 TATATATATTTTCAAA-ATATTTTAAAAACTATATATTA
* *
3039452 TATGTATGTTTT
1 TATATATATTTT
3039464 TTTAAAAATG
Statistics
Matches: 112, Mismatches: 10, Indels: 14
0.82 0.07 0.10
Matches are distributed among these distances:
36 26 0.23
37 3 0.03
38 10 0.09
39 33 0.29
40 1 0.01
41 14 0.12
42 3 0.03
43 8 0.07
44 14 0.12
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.46
Consensus pattern (38 bp):
TATATATATTTTCAAAATATTTTAAAAACTATATATTA
Found at i:3039478 original size:41 final size:40
Alignment explanation
Indices: 3039351--3039488 Score: 121
Period size: 39 Copynumber: 3.6 Consensus size: 40
3039341 ATATATATTC
*
3039351 AAAAATATTTT-AAAA--A-AT-ATATATTATATTTATTTT
1 AAAAATATTTTCAAAACTATATAATATATTATGTTT-TTTT
* * * *
3039387 CAAAATATTTTAAAAACTATATAATATATAAATG--TTTTC
1 AAAAATATTTTCAAAACTATATAATATAT-TATGTTTTTTT
* *
3039426 AAACATATTTTCAAAACTATATATTATATGTATGTTTTTTT
1 AAAAATATTTTCAAAACTATATAATATAT-TATGTTTTTTT
*
3039467 AAAAATGTTTTC-AAACTATATA
1 AAAAATATTTTCAAAACTATATA
3039489 CAATATATAT
Statistics
Matches: 81, Mismatches: 13, Indels: 12
0.76 0.12 0.11
Matches are distributed among these distances:
36 10 0.12
37 4 0.05
39 32 0.40
40 13 0.16
41 20 0.25
42 2 0.02
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.46
Consensus pattern (40 bp):
AAAAATATTTTCAAAACTATATAATATATTATGTTTTTTT
Found at i:3039487 original size:149 final size:144
Alignment explanation
Indices: 3039171--3039498 Score: 328
Period size: 149 Copynumber: 2.2 Consensus size: 144
3039161 ATATTATATA
* *
3039171 TTTTAAAAAATGTTTTCAAA-AT-TATATAGT-T-TTCAAAAATATTTTAAAACTATATACTATA
1 TTTTTAAAAATGTTTTCAAATATATATATA-TATATTCAAAAATATTTTAAAAATATATACTATA
* * * * *
3039232 TAATTTCAAAATGATTTCAAAATTATATAGTATATATATGTTTTCAAAATATTTTTTTAAAACTA
65 TAATTTCAAAATGATTTAAAAACTATATAATATATAAATGTTTTCAAAATA-TTTTTCAAAACTA
*
3039297 TATATATTTACAAAAT
129 TATATATATACAAAAT
* * * *
3039313 GTTTTAAAAATATATAT-AATATATATATATATATATTCAAAAATATTTTAAAAAATATATATTA
1 TTTTTAAAAATGT-TTTCAA-ATATATATATATATATTCAAAAATATTTT-AAAAATATATACTA
*
3039377 TATTTATTTTCAAAAT-ATTTTAAAAACTATATAATATATAAATGTTTTCAAACATA-TTTTCAA
63 TA--TAATTTCAAAATGA-TTTAAAAACTATATAATATATAAATGTTTTCAAA-ATATTTTTCAA
** ***
3039440 AACTATATATTATATGTATGTT
124 AACTATATA-TATATACAAAAT
*
3039462 TTTTTAAAAATGTTTTCAAACTATATACAATATATAT
1 TTTTTAAAAATGTTTTCAAA-TATATA-TATATATAT
3039499 ATATAATAAA
Statistics
Matches: 149, Mismatches: 22, Indels: 22
0.77 0.11 0.11
Matches are distributed among these distances:
142 12 0.08
143 3 0.02
144 3 0.02
145 7 0.05
146 14 0.09
147 14 0.09
148 19 0.13
149 66 0.44
150 11 0.07
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.45
Consensus pattern (144 bp):
TTTTTAAAAATGTTTTCAAATATATATATATATATTCAAAAATATTTTAAAAATATATACTATAT
AATTTCAAAATGATTTAAAAACTATATAATATATAAATGTTTTCAAAATATTTTTCAAAACTATA
TATATATACAAAAT
Found at i:3039919 original size:29 final size:29
Alignment explanation
Indices: 3039859--3039920 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
3039849 TGATTAAGAT
* *
3039859 GGTGGTCGGAGAAGGAGCACGTTAGGGTG
1 GGTGGTCGGAGAAGGAGCAAGATAGGGTG
*
3039888 GGTGGTCGGAGAAGGAG-AAGATGGGGTAG
1 GGTGGTCGGAGAAGGAGCAAGATAGGGT-G
3039917 GGTG
1 GGTG
3039921 AGAGAGAGGG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 7 0.24
29 22 0.76
ACGTcount: A:0.23, C:0.06, G:0.55, T:0.16
Consensus pattern (29 bp):
GGTGGTCGGAGAAGGAGCAAGATAGGGTG
Found at i:3044839 original size:14 final size:14
Alignment explanation
Indices: 3044820--3044847 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
3044810 AATATAGTTA
3044820 AAATATATAAAAAT
1 AAATATATAAAAAT
3044834 AAATATATAAAAAT
1 AAATATATAAAAAT
3044848 GGAGCCGGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
AAATATATAAAAAT
Found at i:3045473 original size:28 final size:28
Alignment explanation
Indices: 3045433--3045492 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
3045423 ATAAGTTATT
* * *
3045433 TTTTTATTTATTTGAAAATTTTTGAATG
1 TTTTAATTCATTTGAAAATCTTTGAATG
3045461 TTTTAATTCATTTGAAAATCTTTGAATG
1 TTTTAATTCATTTGAAAATCTTTGAATG
3045489 TTTT
1 TTTT
3045493 GATTTATAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.28, C:0.03, G:0.10, T:0.58
Consensus pattern (28 bp):
TTTTAATTCATTTGAAAATCTTTGAATG
Found at i:3049155 original size:22 final size:22
Alignment explanation
Indices: 3049104--3049164 Score: 79
Period size: 21 Copynumber: 2.8 Consensus size: 22
3049094 TAAGTCTTAG
*
3049104 TGGTCATTTTTTGTATACAAAT
1 TGGTCATTTTTTGTATATAAAT
* **
3049126 TTGT-ATTTTTTGTATATAGCT
1 TGGTCATTTTTTGTATATAAAT
3049147 TGGTCATTTTTTGTATAT
1 TGGTCATTTTTTGTATAT
3049165 GTCTTAGTGG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
21 17 0.52
22 16 0.48
ACGTcount: A:0.21, C:0.07, G:0.15, T:0.57
Consensus pattern (22 bp):
TGGTCATTTTTTGTATATAAAT
Found at i:3049413 original size:88 final size:89
Alignment explanation
Indices: 3049310--3049474 Score: 323
Period size: 88 Copynumber: 1.9 Consensus size: 89
3049300 TATTATATAA
3049310 CTTATACCATTTTCACTTAATGTTTTATCAATGAAAGAAGTTATTTGAATTATTACTTAGACATG
1 CTTATACCATTTTCACTTAATGTTTTATCAATGAAAGAAGTTATTTGAATTATTACTTAGACATG
3049375 TTAA-TGAAATACATTTTTCAGCC
66 TTAATTGAAATACATTTTTCAGCC
3049398 CTTATACCATTTTCACTTAATGTTTTATCAATGAAAGAAGTTATTTGAATTATTACTTAGACATG
1 CTTATACCATTTTCACTTAATGTTTTATCAATGAAAGAAGTTATTTGAATTATTACTTAGACATG
3049463 TTAATTGAAATA
66 TTAATTGAAATA
3049475 ATACATTTTT
Statistics
Matches: 76, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
88 69 0.91
89 7 0.09
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.42
Consensus pattern (89 bp):
CTTATACCATTTTCACTTAATGTTTTATCAATGAAAGAAGTTATTTGAATTATTACTTAGACATG
TTAATTGAAATACATTTTTCAGCC
Found at i:3051346 original size:16 final size:14
Alignment explanation
Indices: 3051312--3051338 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
3051302 TGGTATGTTA
3051312 TATCATGTCAATAT
1 TATCATGTCAATAT
3051326 TATCATGTCAATA
1 TATCATGTCAATA
3051339 AATTATCACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.15, G:0.07, T:0.41
Consensus pattern (14 bp):
TATCATGTCAATAT
Found at i:3052909 original size:23 final size:23
Alignment explanation
Indices: 3052883--3052951 Score: 84
Period size: 23 Copynumber: 3.0 Consensus size: 23
3052873 CACCACAGCT
* * *
3052883 CGTATAAATGTACCAAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
* * *
3052906 CGTAGAATTGCACCGTAGTGCCG
1 CGTAGAAATGCACCGAAGTGCCA
3052929 CGTAGAAATGCACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
3052952 TATAAGATGT
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.32, C:0.25, G:0.25, T:0.19
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCA
Found at i:3055541 original size:26 final size:25
Alignment explanation
Indices: 3055479--3055567 Score: 78
Period size: 25 Copynumber: 3.5 Consensus size: 25
3055469 TAAATATTTT
*
3055479 TATTCTTA-TTTTTAACTT-AAAATGCA
1 TATT-TTATTTTTTAATTTAAAAAT--A
3055505 TATTTTA-TTTTT-ATTTAAAAGTATA
1 TATTTTATTTTTTAATTTAAAA--ATA
*
3055530 TATTTTATTTTTTTAATTTTAAAATA
1 TATTTTA-TTTTTTAATTTAAAAATA
3055556 TATTTTATTTTT
1 TATTTTATTTTT
3055568 ATCTTAATTT
Statistics
Matches: 55, Mismatches: 2, Indels: 13
0.79 0.03 0.19
Matches are distributed among these distances:
24 3 0.05
25 24 0.44
26 14 0.25
27 7 0.13
28 7 0.13
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (25 bp):
TATTTTATTTTTTAATTTAAAAATA
Found at i:3055550 original size:29 final size:27
Alignment explanation
Indices: 3055504--3055582 Score: 78
Period size: 29 Copynumber: 2.9 Consensus size: 27
3055494 CTTAAAATGC
3055504 ATATTTTA--TTTTT-A-TTTAAAAGTAT
1 ATATTTTATTTTTTTAATTTTAAAA--AT
3055529 ATATTTTATTTTTTTAATTTT-AAAAT
1 ATATTTTATTTTTTTAATTTTAAAAAT
3055555 ATATTTTATTTTTATCTTAATTTTAAAA
1 ATATTTTA-TTTT-T-TTAATTTTAAAA
3055583 TATTATAAGA
Statistics
Matches: 46, Mismatches: 0, Indels: 11
0.81 0.00 0.19
Matches are distributed among these distances:
25 8 0.17
26 10 0.22
27 9 0.20
28 5 0.11
29 11 0.24
30 3 0.07
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.62
Consensus pattern (27 bp):
ATATTTTATTTTTTTAATTTTAAAAAT
Found at i:3055584 original size:29 final size:26
Alignment explanation
Indices: 3055527--3055585 Score: 91
Period size: 29 Copynumber: 2.2 Consensus size: 26
3055517 ATTTAAAAGT
3055527 ATATATTTTATTTTTTTAATTTTAAA
1 ATATATTTTATTTTTTTAATTTTAAA
3055553 ATATATTTTATTTTTATCTTAATTTTAAA
1 ATATATTTTA-TTTT-T-TTAATTTTAAA
3055582 ATAT
1 ATAT
3055586 TATAAGAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
26 10 0.33
27 4 0.13
28 1 0.03
29 15 0.50
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.63
Consensus pattern (26 bp):
ATATATTTTATTTTTTTAATTTTAAA
Found at i:3055667 original size:29 final size:28
Alignment explanation
Indices: 3055629--3055731 Score: 109
Period size: 29 Copynumber: 3.4 Consensus size: 28
3055619 TAAGAATAAT
*
3055629 TTTTTAAAGTCAATAAAAAATTAAAATATA
1 TTTTT-AAGTTAATAAAAAA-TAAAATATA
3055659 TTTTTAAGTTAA-AATAAGAATAAAATATA
1 TTTTTAAGTTAATAA-AA-AATAAAATATA
*
3055688 TTTTTAAGTTAATATAAGAATAAAATATA
1 TTTTTAAGTTAATA-AAAAATAAAATATA
3055717 TAGTTTTAATGTTAA
1 T--TTTTAA-GTTAA
3055732 GATATATAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 12
0.82 0.03 0.15
Matches are distributed among these distances:
28 2 0.03
29 41 0.64
30 9 0.14
31 7 0.11
32 5 0.08
ACGTcount: A:0.51, C:0.01, G:0.07, T:0.41
Consensus pattern (28 bp):
TTTTTAAGTTAATAAAAAATAAAATATA
Found at i:3057054 original size:32 final size:33
Alignment explanation
Indices: 3056979--3057054 Score: 82
Period size: 33 Copynumber: 2.3 Consensus size: 33
3056969 CATTTATTAA
* *
3056979 GGTTGATGAAAGGTAATTAACAAATAGATAGAT
1 GGTTGATGAAAGATAATTAACAAATAGATAGAC
** * *
3057012 TATTGCTGAAAGATAATTAATAAATA-ATAGAC
1 GGTTGATGAAAGATAATTAACAAATAGATAGAC
*
3057044 GGTTGGTGAAA
1 GGTTGATGAAA
3057055 AATAGTTAGC
Statistics
Matches: 34, Mismatches: 9, Indels: 1
0.77 0.20 0.02
Matches are distributed among these distances:
32 13 0.38
33 21 0.62
ACGTcount: A:0.45, C:0.04, G:0.22, T:0.29
Consensus pattern (33 bp):
GGTTGATGAAAGATAATTAACAAATAGATAGAC
Found at i:3057194 original size:60 final size:60
Alignment explanation
Indices: 3057120--3057235 Score: 178
Period size: 60 Copynumber: 1.9 Consensus size: 60
3057110 ATGGTCCCCC
* * * ** *
3057120 GACTATAGGGTATTTCTTTGTTGTGTCCCCCGACTATTAAAAGTTACAAAATGATCCTTT
1 GACTATAGGATATTTCTTTATTGAGTCCCCAAACTATTAAAAATTACAAAATGATCCTTT
3057180 GACTATAGGATATTTCTTTATTGAGTCCCCAAACTATTAAAAATTACAAAATGATC
1 GACTATAGGATATTTCTTTATTGAGTCCCCAAACTATTAAAAATTACAAAATGATC
3057236 AATCGATTAG
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
60 50 1.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (60 bp):
GACTATAGGATATTTCTTTATTGAGTCCCCAAACTATTAAAAATTACAAAATGATCCTTT
Found at i:3062936 original size:3 final size:3
Alignment explanation
Indices: 3062923--3062982 Score: 102
Period size: 3 Copynumber: 19.7 Consensus size: 3
3062913 TTTGCAAAGA
*
3062923 AAT AGT AAT AAT AAT AAT AAT AAAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT
3062969 AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AA
3062983 AATGTGTATG
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
3 51 0.94
4 3 0.06
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:3065027 original size:21 final size:22
Alignment explanation
Indices: 3064986--3065028 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
3064976 ATGTTAGAGG
* *
3064986 GGAACCGATTCCCCTGTTACAA
1 GGAACCGATTACCCTGCTACAA
3065008 GGAACCGA-TACCCTGCTACAA
1 GGAACCGATTACCCTGCTACAA
3065029 TACTGCTACA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.30, C:0.33, G:0.19, T:0.19
Consensus pattern (22 bp):
GGAACCGATTACCCTGCTACAA
Found at i:3072225 original size:19 final size:20
Alignment explanation
Indices: 3072188--3072226 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
3072178 TTTTTTCTTT
3072188 AGGGGGAATCGGTACCCCCC
1 AGGGGGAATCGGTACCCCCC
*
3072208 AGGGGGAATCTGTACCCCC
1 AGGGGGAATCGGTACCCCC
3072227 TGCGTAATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.21, C:0.33, G:0.33, T:0.13
Consensus pattern (20 bp):
AGGGGGAATCGGTACCCCCC
Found at i:3075161 original size:29 final size:29
Alignment explanation
Indices: 3075085--3075182 Score: 101
Period size: 29 Copynumber: 3.3 Consensus size: 29
3075075 AAAAAAATTG
*
3075085 AATACTTTAGGTACCTATTTTGACCAAAA
1 AATACTTTAGGTACCTATTTTGACTAAAA
* *
3075114 AATACATTAGGCACCTATTTTGACT-AAA
1 AATACTTTAGGTACCTATTTTGACTAAAA
* *
3075142 AATAACTTTAAGTACTTATTTTTGA-TAAAAA
1 AAT-ACTTTAGGTACCTA-TTTTGACT-AAAA
*
3075173 AATGCTTTAG
1 AATACTTTAG
3075183 ATACTTAAAT
Statistics
Matches: 56, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
28 6 0.11
29 33 0.59
30 11 0.20
31 6 0.11
ACGTcount: A:0.40, C:0.13, G:0.10, T:0.37
Consensus pattern (29 bp):
AATACTTTAGGTACCTATTTTGACTAAAA
Found at i:3075181 original size:30 final size:30
Alignment explanation
Indices: 3075131--3075189 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
3075121 TAGGCACCTA
3075131 TTTTGACTAAAAATAACTTTA-AGTACTTAT
1 TTTTGACTAAAAATAACTTTAGA-TACTTAT
3075161 TTTTGA-TAAAAA-AATGCTTTAGATACTTA
1 TTTTGACTAAAAATAA--CTTTAGATACTTA
3075190 AATAAAAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
28 2 0.08
29 6 0.23
30 17 0.65
31 1 0.04
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.42
Consensus pattern (30 bp):
TTTTGACTAAAAATAACTTTAGATACTTAT
Found at i:3075780 original size:21 final size:21
Alignment explanation
Indices: 3075756--3075795 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
3075746 TGCACCAAAA
*
3075756 TTAAA-TTTTTATATTAAACCT
1 TTAAAGTTTTT-TAATAAACCT
3075777 TTAAAGTTTTTTAATAAAC
1 TTAAAGTTTTTTAATAAAC
3075796 ATTATCTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.40, C:0.07, G:0.03, T:0.50
Consensus pattern (21 bp):
TTAAAGTTTTTTAATAAACCT
Found at i:3078797 original size:13 final size:13
Alignment explanation
Indices: 3078779--3078805 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
3078769 ATGTTTTAGC
3078779 CTTTCAAGAATAT
1 CTTTCAAGAATAT
3078792 CTTTCAAGAATAT
1 CTTTCAAGAATAT
3078805 C
1 C
3078806 CTCCAAGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.19, G:0.07, T:0.37
Consensus pattern (13 bp):
CTTTCAAGAATAT
Found at i:3085932 original size:20 final size:20
Alignment explanation
Indices: 3085907--3085954 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
3085897 CTAAATCATT
* *
3085907 TTTTCAAAAATTCATTTTGG
1 TTTTCAAAAATCCATTTTAG
3085927 TTTTC-AAAATCCATTTTAG
1 TTTTCAAAAATCCATTTTAG
*
3085946 CTTTCAAAA
1 TTTTCAAAA
3085955 GAAAATCATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.33, C:0.15, G:0.06, T:0.46
Consensus pattern (20 bp):
TTTTCAAAAATCCATTTTAG
Found at i:3097497 original size:18 final size:18
Alignment explanation
Indices: 3097474--3097509 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
3097464 TTCATTTAAG
3097474 TTTTAGATAAATAATACA
1 TTTTAGATAAATAATACA
*
3097492 TTTTAGATAAATGATACA
1 TTTTAGATAAATAATACA
3097510 ATAAATGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.39
Consensus pattern (18 bp):
TTTTAGATAAATAATACA
Found at i:3098709 original size:21 final size:22
Alignment explanation
Indices: 3098669--3098717 Score: 57
Period size: 21 Copynumber: 2.2 Consensus size: 22
3098659 ATTTATCTAT
*
3098669 ATATGAAAATGATTCAATTTGTA-
1 ATAT-AAAATAATTCAATTT-TAC
3098692 ATATAAAATAATT-AATTTTAC
1 ATATAAAATAATTCAATTTTAC
3098713 ATATA
1 ATATA
3098718 TTTAGGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 2 0.08
21 10 0.42
22 8 0.33
23 4 0.17
ACGTcount: A:0.49, C:0.04, G:0.06, T:0.41
Consensus pattern (22 bp):
ATATAAAATAATTCAATTTTAC
Found at i:3098870 original size:4 final size:4
Alignment explanation
Indices: 3098863--3098922 Score: 84
Period size: 4 Copynumber: 15.0 Consensus size: 4
3098853 TTAAATGTAT
* * * *
3098863 GTAC GTAC GTAC ATAC GTAC GTAC GTAC ATAC GTAC GTAC ATAC ATAC
1 GTAC GTAC GTAC GTAC GTAC GTAC GTAC GTAC GTAC GTAC GTAC GTAC
3098911 GTAC GTAC GTAC
1 GTAC GTAC GTAC
3098923 TGTGTGTGTG
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 50 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (4 bp):
GTAC
Found at i:3098884 original size:16 final size:16
Alignment explanation
Indices: 3098863--3098922 Score: 111
Period size: 16 Copynumber: 3.8 Consensus size: 16
3098853 TTAAATGTAT
3098863 GTACGTACGTACATAC
1 GTACGTACGTACATAC
3098879 GTACGTACGTACATAC
1 GTACGTACGTACATAC
*
3098895 GTACGTACATACATAC
1 GTACGTACGTACATAC
3098911 GTACGTACGTAC
1 GTACGTACGTAC
3098923 TGTGTGTGTG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 42 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (16 bp):
GTACGTACGTACATAC
Found at i:3098930 original size:2 final size:2
Alignment explanation
Indices: 3098923--3098985 Score: 117
Period size: 2 Copynumber: 31.5 Consensus size: 2
3098913 ACGTACGTAC
*
3098923 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TT TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
3098965 TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG T
3098986 TCTTTCAATT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 59 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:3101832 original size:16 final size:16
Alignment explanation
Indices: 3101811--3101871 Score: 95
Period size: 16 Copynumber: 3.8 Consensus size: 16
3101801 TAATAAATAA
3101811 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
3101827 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
* *
3101843 ATGAACATAAATGAAC
1 ACGAACATAAACGAAC
*
3101859 ACGGACATAAACG
1 ACGAACATAAACG
3101872 TTAGAGACCC
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 40 1.00
ACGTcount: A:0.54, C:0.21, G:0.15, T:0.10
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:3110141 original size:6 final size:6
Alignment explanation
Indices: 3110126--3110182 Score: 55
Period size: 6 Copynumber: 9.3 Consensus size: 6
3110116 CCCTAAATTG
* *
3110126 AAAA-A AAAAGA AAAAGAA AAAAGA GAAAAGA AAAATA AGAAGGA AAAAG-
1 AAAAGA AAAAGA AAAAG-A AAAAGA -AAAAGA AAAAGA A-AAAGA AAAAGA
3110175 AAAAGA AA
1 AAAAGA AA
3110183 TAAGGTGGGT
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
5 9 0.21
6 18 0.42
7 16 0.37
ACGTcount: A:0.81, C:0.00, G:0.18, T:0.02
Consensus pattern (6 bp):
AAAAGA
Found at i:3110147 original size:14 final size:14
Alignment explanation
Indices: 3110128--3110166 Score: 53
Period size: 13 Copynumber: 2.7 Consensus size: 14
3110118 CTAAATTGAA
3110128 AAAAAAAGAAAAAG
1 AAAAAAAGAAAAAG
3110142 -AAAAAAGAGAAAAG
1 AAAAAAAGA-AAAAG
3110156 AAAAATAAGAA
1 AAAAA-AAGAA
3110167 GGAAAAAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
13 8 0.36
14 5 0.23
15 5 0.23
16 4 0.18
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (14 bp):
AAAAAAAGAAAAAG
Found at i:3110187 original size:19 final size:18
Alignment explanation
Indices: 3110130--3110187 Score: 55
Period size: 19 Copynumber: 3.0 Consensus size: 18
3110120 AAATTGAAAA
*
3110130 AAAAAGAAAAAGAAAAAAG
1 AAAAAG-AAAAGAAAAAGG
3110149 AGAAAAGAAAA-ATAAGAAGG
1 A-AAAAGAAAAGA-AA-AAGG
3110169 AAAAAGAAAAGAAATAAGG
1 AAAAAGAAAAGAAA-AAGG
3110188 TGGGTTCAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
18 1 0.03
19 22 0.67
20 10 0.30
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (18 bp):
AAAAAGAAAAGAAAAAGG
Found at i:3111881 original size:2 final size:2
Alignment explanation
Indices: 3111874--3111925 Score: 74
Period size: 2 Copynumber: 27.5 Consensus size: 2
3111864 AATTTTCGTC
*
3111874 TA TA TA TA -A CA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3111914 TA TA TA T- TA TA T
1 TA TA TA TA TA TA T
3111926 TTTACATAAA
Statistics
Matches: 46, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
1 3 0.07
2 43 0.93
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:3113056 original size:17 final size:16
Alignment explanation
Indices: 3113031--3113094 Score: 51
Period size: 17 Copynumber: 3.9 Consensus size: 16
3113021 TTTTATTAAT
*
3113031 TATTATTATATTTTTCA
1 TATTTTTATATTTTT-A
*
3113048 TATTTTTAT-TTTATA
1 TATTTTTATATTTTTA
* *
3113063 TATATATATATTTTT-
1 TATTTTTATATTTTTA
3113078 TATTTTTTACTATTTTT
1 TA-TTTTTA-TATTTTT
3113095 TCTTTTAGAT
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
15 10 0.27
16 12 0.32
17 15 0.41
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (16 bp):
TATTTTTATATTTTTA
Found at i:3113071 original size:30 final size:29
Alignment explanation
Indices: 3113020--3113084 Score: 71
Period size: 30 Copynumber: 2.2 Consensus size: 29
3113010 ATTTAGCATT
3113020 TTTTTATTAATTATTATTATAT-TTTTCATA
1 TTTTTATT-ATTATTATTATATATTTT-ATA
*
3113050 TTTTTATT-TTATATATATATATATTTTTTA
1 TTTTTATTATTAT-TAT-TATATATTTTATA
3113080 TTTTT
1 TTTTT
3113085 TACTATTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
28 4 0.13
29 3 0.10
30 20 0.65
31 4 0.13
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.71
Consensus pattern (29 bp):
TTTTTATTATTATTATTATATATTTTATA
Found at i:3113162 original size:5 final size:5
Alignment explanation
Indices: 3113152--3113177 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
3113142 TATATATATG
3113152 TATTT TATTT TATTT TATTT TATTT T
1 TATTT TATTT TATTT TATTT TATTT T
3113178 TTACTTTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TATTT
Found at i:3113256 original size:14 final size:14
Alignment explanation
Indices: 3113203--3113262 Score: 50
Period size: 14 Copynumber: 4.1 Consensus size: 14
3113193 AAGTATTCTT
3113203 TTATATATATATATA
1 TTATATATAT-TATA
* *
3113218 TATATATCTATT-TC
1 T-TATATATATTATA
*
3113232 TTATTAAATATTATA
1 TTA-TATATATTATA
*
3113247 TTATATATATTTTA
1 TTATATATATTATA
3113261 TT
1 TT
3113263 TAGGGTTTCT
Statistics
Matches: 35, Mismatches: 7, Indels: 7
0.71 0.14 0.14
Matches are distributed among these distances:
13 2 0.06
14 19 0.54
15 6 0.17
16 8 0.23
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.58
Consensus pattern (14 bp):
TTATATATATTATA
Found at i:3114825 original size:19 final size:17
Alignment explanation
Indices: 3114797--3114851 Score: 62
Period size: 16 Copynumber: 3.2 Consensus size: 17
3114787 AGTTCCATAC
3114797 AATAT-TATTTAAAATTA
1 AATATATATTTAAAA-TA
3114814 AATATATAATTTAAAA-A
1 AATATAT-ATTTAAAATA
3114831 TAATAT-TATTTAAAATA
1 -AATATATATTTAAAATA
3114848 AATA
1 AATA
3114852 ATTAATATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
16 12 0.35
17 8 0.24
18 6 0.18
19 8 0.24
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
AATATATATTTAAAATA
Found at i:3114841 original size:16 final size:17
Alignment explanation
Indices: 3114797--3114851 Score: 69
Period size: 19 Copynumber: 3.2 Consensus size: 17
3114787 AGTTCCATAC
*
3114797 AATATTATTTAAAATTA
1 AATATTATTTAAAAATA
3114814 AATATATAATTTAAAAAT-
1 AATAT-T-ATTTAAAAATA
3114832 AATATTATTT-AAAATA
1 AATATTATTTAAAAATA
3114848 AATA
1 AATA
3114852 ATTAATATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
15 5 0.15
16 8 0.24
17 6 0.18
18 6 0.18
19 9 0.26
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
AATATTATTTAAAAATA
Found at i:3114857 original size:23 final size:23
Alignment explanation
Indices: 3114828--3114915 Score: 92
Period size: 23 Copynumber: 3.9 Consensus size: 23
3114818 TATAATTTAA
3114828 AAATAATATTATTTAAAATAAAT
1 AAATAATATTATTTAAAATAAAT
* **
3114851 AATTAATATTATTTCTAATAAAT
1 AAATAATATTATTTAAAATAAAT
* * *
3114874 AAATAATATGATTTAAAA-GATT
1 AAATAATATTATTTAAAATAAAT
3114896 AAATAA-A-TATTTTAAAATAA
1 AAATAATATTA-TTTAAAATAA
3114916 TTTCATGATA
Statistics
Matches: 52, Mismatches: 11, Indels: 5
0.76 0.16 0.07
Matches are distributed among these distances:
20 1 0.02
21 8 0.15
22 9 0.17
23 34 0.65
ACGTcount: A:0.57, C:0.01, G:0.02, T:0.40
Consensus pattern (23 bp):
AAATAATATTATTTAAAATAAAT
Found at i:3115793 original size:17 final size:16
Alignment explanation
Indices: 3115762--3115793 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
3115752 AATTTTTTTA
3115762 ATTTTAAAATATTATT
1 ATTTTAAAATATTATT
3115778 ATTTT-AAAT-TTATT
1 ATTTTAAAATATTATT
3115792 AT
1 AT
3115794 CTATAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 4 0.25
16 5 0.31
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
ATTTTAAAATATTATT
Found at i:3119924 original size:14 final size:14
Alignment explanation
Indices: 3119899--3119932 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
3119889 GCGATCATTG
3119899 AAAAAAATATAAAT
1 AAAAAAATATAAAT
3119913 ATAAAAAA-ATAAAT
1 A-AAAAAATATAAAT
3119927 AAAAAA
1 AAAAAA
3119933 TAAATTATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 5 0.26
14 8 0.42
15 6 0.32
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (14 bp):
AAAAAAATATAAAT
Found at i:3120292 original size:15 final size:15
Alignment explanation
Indices: 3120274--3120304 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
3120264 AAATTCTAAA
3120274 TATTTAAATAAAAAT
1 TATTTAAATAAAAAT
*
3120289 TATTTATATAAAAAT
1 TATTTAAATAAAAAT
3120304 T
1 T
3120305 CTATATGTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TATTTAAATAAAAAT
Found at i:3120409 original size:11 final size:11
Alignment explanation
Indices: 3120393--3120417 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
3120383 ATAATTTATG
3120393 TAAAAATATAT
1 TAAAAATATAT
3120404 TAAAAATATAT
1 TAAAAATATAT
3120415 TAA
1 TAA
3120418 TGTTTACATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
TAAAAATATAT
Found at i:3126121 original size:21 final size:21
Alignment explanation
Indices: 3126082--3126123 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
3126072 ATTTCTTAAA
3126082 AAATCACTCTCCACATCTCTC
1 AAATCACTCTCCACATCTCTC
*
3126103 AAAT-ACTCTCTCACTTCTCTC
1 AAATCACTCTC-CACATCTCTC
3126124 CTCATCGGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.26, C:0.40, G:0.00, T:0.33
Consensus pattern (21 bp):
AAATCACTCTCCACATCTCTC
Found at i:3126939 original size:5 final size:5
Alignment explanation
Indices: 3126930--3126972 Score: 54
Period size: 5 Copynumber: 9.0 Consensus size: 5
3126920 ACAATAAGAA
* *
3126930 ATAAT GTAAT ATAAT ATAAT A-AAT ATAAT A-AAT ATTAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
3126973 TAAAACTCTC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
4 8 0.25
5 24 0.75
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:3126956 original size:14 final size:15
Alignment explanation
Indices: 3126930--3126972 Score: 54
Period size: 14 Copynumber: 3.0 Consensus size: 15
3126920 ACAATAAGAA
*
3126930 ATAATGTAATATAAT
1 ATAATATAATATAAT
3126945 ATAATA-AATATAAT
1 ATAATATAATATAAT
*
3126959 A-AATATTATATAAT
1 ATAATATAATATAAT
3126973 TAAAACTCTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 4 0.16
14 16 0.64
15 5 0.20
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (15 bp):
ATAATATAATATAAT
Found at i:3132967 original size:16 final size:18
Alignment explanation
Indices: 3132948--3132982 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
3132938 TGAATGTAAA
3132948 AAAATG-AA-AATGCAAG
1 AAAATGTAATAATGCAAG
3132964 AAAATGTAATAATGCAAG
1 AAAATGTAATAATGCAAG
3132982 A
1 A
3132983 TGCATGAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 2 0.12
18 9 0.53
ACGTcount: A:0.60, C:0.06, G:0.17, T:0.17
Consensus pattern (18 bp):
AAAATGTAATAATGCAAG
Found at i:3134105 original size:15 final size:17
Alignment explanation
Indices: 3134085--3134116 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
3134075 TTTTTGGGTT
3134085 GGTGTT-GA-AAGCTTA
1 GGTGTTAGATAAGCTTA
3134100 GGTGTTAGATAAGCTTA
1 GGTGTTAGATAAGCTTA
3134117 AGGAAAGCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 2 0.13
17 7 0.47
ACGTcount: A:0.28, C:0.06, G:0.31, T:0.34
Consensus pattern (17 bp):
GGTGTTAGATAAGCTTA
Found at i:3135298 original size:22 final size:22
Alignment explanation
Indices: 3135257--3135332 Score: 71
Period size: 22 Copynumber: 3.4 Consensus size: 22
3135247 TCGAGGGTTC
* * *
3135257 TATGTGGTCATTCAGAACAAAT
1 TATGTGGTCCTTCGGGACAAAT
* * * *
3135279 TATATGGTCTTTTGGGACAAAACC
1 TATGTGGTCCTTCGGGAC-AAA-T
3135303 TATGTGGTCCTTCGGGACAAAT
1 TATGTGGTCCTTCGGGACAAAT
3135325 TATGTGGT
1 TATGTGGT
3135333 AATTATGTGG
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
22 21 0.50
23 6 0.14
24 15 0.36
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (22 bp):
TATGTGGTCCTTCGGGACAAAT
Found at i:3150484 original size:14 final size:14
Alignment explanation
Indices: 3150467--3150493 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
3150457 AATGAGTTAT
3150467 TGGGTATGAATGGA
1 TGGGTATGAATGGA
3150481 TGGGTATGAATGG
1 TGGGTATGAATGG
3150494 GCTATTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.00, G:0.44, T:0.30
Consensus pattern (14 bp):
TGGGTATGAATGGA
Found at i:3156364 original size:6 final size:6
Alignment explanation
Indices: 3156355--3156435 Score: 56
Period size: 6 Copynumber: 12.5 Consensus size: 6
3156345 GAAAAATAAA
* * **
3156355 AAAAAT AAAACA- AAAACAT AAAAAT AAAAAAA AAAAAT AATAAAT CAAAGG
1 AAAAAT AAAA-AT AAAA-AT AAAAAT -AAAAAT AAAAAT AA-AAAT AAAAAT
3156406 AAAAAT AGAAAAAT AGAAAAT AAAAAT AAA
1 AAAAAT --AAAAAT A-AAAAT AAAAAT AAA
3156436 TCAAAGGAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
6 33 0.55
7 21 0.35
8 6 0.10
ACGTcount: A:0.79, C:0.04, G:0.05, T:0.12
Consensus pattern (6 bp):
AAAAAT
Found at i:3156377 original size:19 final size:19
Alignment explanation
Indices: 3156346--3156435 Score: 74
Period size: 19 Copynumber: 4.7 Consensus size: 19
3156336 ATCAAAGGGG
*
3156346 AAAAATAAA-AAAAATAAA
1 AAAAAAAAATAAAAATAAA
* *
3156364 ACAAAAACATAAAAATAAA
1 AAAAAAAAATAAAAATAAA
3156383 AAAAAAAAATAATAAATCAAA
1 AAAAAAAAATAA-AAAT-AAA
** * * *
3156404 GGAAAAATAGAAAAATAGA
1 AAAAAAAAATAAAAATAAA
*
3156423 AAATAAAAATAAA
1 AAAAAAAAATAAA
3156436 TCAAAGGAAA
Statistics
Matches: 54, Mismatches: 15, Indels: 5
0.73 0.20 0.07
Matches are distributed among these distances:
18 6 0.11
19 29 0.54
20 8 0.15
21 11 0.20
ACGTcount: A:0.80, C:0.03, G:0.04, T:0.12
Consensus pattern (19 bp):
AAAAAAAAATAAAAATAAA
Found at i:3156390 original size:40 final size:42
Alignment explanation
Indices: 3156346--3156435 Score: 96
Period size: 40 Copynumber: 2.2 Consensus size: 42
3156336 ATCAAAGGGG
*
3156346 AAAAATAAAAAAAAT-AAAACAAAAACATAAAAATA-AAAAA
1 AAAAATAAAAAAAATCAAAACAAAAACAGAAAAATAGAAAAA
* * ** * *
3156386 AAAAA-ATAATAAATCAAAGGAAAAATAGAAAAATAGAAAAT
1 AAAAATAAAAAAAATCAAAACAAAAACAGAAAAATAGAAAAA
3156427 AAAAATAAA
1 AAAAATAAA
3156436 TCAAAGGAAA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
39 7 0.18
40 21 0.54
41 9 0.23
42 2 0.05
ACGTcount: A:0.80, C:0.03, G:0.04, T:0.12
Consensus pattern (42 bp):
AAAAATAAAAAAAATCAAAACAAAAACAGAAAAATAGAAAAA
Found at i:3156397 original size:22 final size:22
Alignment explanation
Indices: 3156346--3156398 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 22
3156336 ATCAAAGGGG
3156346 AAAAATAAAAAAAATAAAACAA
1 AAAAATAAAAAAAATAAAACAA
*
3156368 AAACATAAAAATAAA-AAAA-AA
1 AAAAATAAAAA-AAATAAAACAA
3156389 AAATAATAAA
1 AAA-AATAAA
3156399 TCAAAGGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 5 0.19
22 19 0.70
23 3 0.11
ACGTcount: A:0.85, C:0.04, G:0.00, T:0.11
Consensus pattern (22 bp):
AAAAATAAAAAAAATAAAACAA
Found at i:3156409 original size:21 final size:20
Alignment explanation
Indices: 3156385--3156448 Score: 57
Period size: 21 Copynumber: 3.3 Consensus size: 20
3156375 AAAATAAAAA
3156385 AAAAAAATAATAAATCAAAGG
1 AAAAAAA-AATAAATCAAAGG
*
3156406 AAAAATAGAA-AAAT---A-G
1 AAAAA-AAAATAAATCAAAGG
3156422 AAAATAAAAATAAATCAAAGG
1 AAAA-AAAAATAAATCAAAGG
3156443 AAAAAA
1 AAAAAA
3156449 TGAGATAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 15
0.67 0.04 0.29
Matches are distributed among these distances:
16 8 0.24
17 6 0.18
20 7 0.21
21 12 0.35
22 1 0.03
ACGTcount: A:0.75, C:0.03, G:0.09, T:0.12
Consensus pattern (20 bp):
AAAAAAAAATAAATCAAAGG
Found at i:3156464 original size:3 final size:3
Alignment explanation
Indices: 3156456--3156622 Score: 68
Period size: 3 Copynumber: 56.7 Consensus size: 3
3156446 AAATGAGATA
*
3156456 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAAT ATT AAAT AAAT CAA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT -AAT -AAT -AAT
* * * * * ** *
3156504 AGGT CAAG AA- AAA AAT AA- AAT AA- AAT AAA AAGT TA- AAT TTT AAA
1 A-AT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT
*
3156548 AAT AAT AA- AAT AA- AAC AAT -AT AA- AAT AAT AAT AAT AAT AAT AATT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T
** *
3156593 TTT AA- AAA AAT -AT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
3156623 ATTAAAGGAT
Statistics
Matches: 124, Mismatches: 23, Indels: 34
0.69 0.13 0.19
Matches are distributed among these distances:
2 20 0.16
3 90 0.73
4 13 0.10
5 1 0.01
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:3157785 original size:15 final size:14
Alignment explanation
Indices: 3157767--3157801 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
3157757 TATTAAAATG
3157767 AAATAAGATAAATAA
1 AAATAA-ATAAATAA
3157782 AAATAAATAAATAA
1 AAATAAATAAATAA
3157796 ATAATA
1 A-AATA
3157802 TATATATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (14 bp):
AAATAAATAAATAA
Found at i:3157797 original size:18 final size:20
Alignment explanation
Indices: 3157761--3157799 Score: 64
Period size: 18 Copynumber: 2.0 Consensus size: 20
3157751 TAAAATTATT
3157761 AAAATGAAATAAGATAAATA
1 AAAATGAAATAAGATAAATA
3157781 AAAAT-AAATAA-ATAAATA
1 AAAATGAAATAAGATAAATA
3157799 A
1 A
3157800 TATATATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 8 0.42
19 6 0.32
20 5 0.26
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (20 bp):
AAAATGAAATAAGATAAATA
Found at i:3157839 original size:2 final size:2
Alignment explanation
Indices: 3157827--3157856 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
3157817 ATTTTAAAAC
3157827 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
3157857 TAAAACAGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:3157852 original size:46 final size:46
Alignment explanation
Indices: 3157799--3157887 Score: 128
Period size: 46 Copynumber: 1.9 Consensus size: 46
3157789 TAAATAAATA
* *
3157799 ATATATATATTTTAAAATA-TTTT-AAAACTATATTATATATATATAT
1 ATATATATATATTAAAACAGTTTTCAAAACTATA-TAT-TATATATAT
3157845 ATATATATATATTAAAACAGTTTTCAAAACTATATATTATATA
1 ATATATATATATTAAAACAGTTTTCAAAACTATATATTATATA
3157888 ATTTTCAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
46 23 0.59
47 7 0.18
48 9 0.23
ACGTcount: A:0.48, C:0.04, G:0.01, T:0.46
Consensus pattern (46 bp):
ATATATATATATTAAAACAGTTTTCAAAACTATATATTATATATAT
Found at i:3157886 original size:38 final size:37
Alignment explanation
Indices: 3157836--3158053 Score: 124
Period size: 38 Copynumber: 5.7 Consensus size: 37
3157826 CTATATTATA
3157836 TATATATATATATATATATATTAAAACAGTTTTCAAAAC
1 TATATAT-TATATATATATATTAAAA-AGTTTTCAAAAC
* ** * ***
3157875 TATATATTATATA-ATTTTCAAAAAAAAAATTAAAAAAAC
1 TATATATTATATATA-TAT--ATTAAAAAGTTTTCAAAAC
* * * *
3157914 CATATATTATATATGT-TATCAAAATGTTTTCAAAAAAC
1 TATATATTATATATATATATTAAAAAGTTTTC--AAAAC
* * *
3157952 TATATAATATATATACATTTTCAAAAATCGTTTTCAAAAC
1 TATATATTATATATATATATT-AAAAA--GTTTTCAAAAC
3157992 TATATATTATATATATAT-TTCAAAAA-TCATTTGC-AAAC
1 TATATATTATATATATATATT-AAAAAGT--TTT-CAAAAC
* *
3158030 TATATAATATATATAT-TAATAAAA
1 TATATATTATATATATATATTAAAA
3158054 TAAAATAAAA
Statistics
Matches: 138, Mismatches: 27, Indels: 30
0.71 0.14 0.15
Matches are distributed among these distances:
36 8 0.06
37 6 0.04
38 49 0.36
39 39 0.28
40 30 0.22
42 6 0.04
ACGTcount: A:0.50, C:0.08, G:0.02, T:0.39
Consensus pattern (37 bp):
TATATATTATATATATATATTAAAAAGTTTTCAAAAC
Found at i:3157886 original size:40 final size:39
Alignment explanation
Indices: 3157834--3158009 Score: 105
Period size: 40 Copynumber: 4.5 Consensus size: 39
3157824 AACTATATTA
3157834 TATATATATATATATATATATATTAAAACAGTTTTCAAAAC
1 TATATAT-TATATATATATATATTAAAA-AGTTTTCAAAAC
* ** * ***
3157875 TATATATTATATA-AT-TTTCAAAAAAAAAATTAAAAAAAC
1 TATATATTATATATATATAT--ATTAAAAAGTTTTCAAAAC
* * * *
3157914 CATATA-T-TATATATGT-TATCAAAATGTTTTCAAAAAAC
1 TATATATTATATATATATATATTAAAAAGTTTTC--AAAAC
* *
3157952 TATATA--ATATATATACATTTTCAAAAATCGTTTTCAAAAC
1 TATATATTATATATATATATATT-AAAAA--GTTTTCAAAAC
3157992 TATATATTATATATATAT
1 TATATATTATATATATAT
3158010 TTCAAAAATC
Statistics
Matches: 100, Mismatches: 22, Indels: 25
0.68 0.15 0.17
Matches are distributed among these distances:
36 7 0.07
37 4 0.04
38 23 0.23
39 18 0.18
40 26 0.26
41 7 0.07
42 15 0.15
ACGTcount: A:0.49, C:0.08, G:0.02, T:0.40
Consensus pattern (39 bp):
TATATATTATATATATATATATTAAAAAGTTTTCAAAAC
Found at i:3158043 original size:40 final size:40
Alignment explanation
Indices: 3157947--3158045 Score: 148
Period size: 40 Copynumber: 2.5 Consensus size: 40
3157937 ATGTTTTCAA
* * *
3157947 AAAACTATATAATATATATACATTTTCAAAAATCGTTTTC
1 AAAACTATATAATATATATATATTTTCAAAAATCATTTGC
*
3157987 AAAACTATATATTATATATATA-TTTCAAAAATCATTTGC
1 AAAACTATATAATATATATATATTTTCAAAAATCATTTGC
3158026 -AAACTATATAATATATATAT
1 AAAACTATATAATATATATAT
3158046 TAATAAAATA
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
38 19 0.35
39 15 0.28
40 20 0.37
ACGTcount: A:0.47, C:0.10, G:0.02, T:0.40
Consensus pattern (40 bp):
AAAACTATATAATATATATATATTTTCAAAAATCATTTGC
Found at i:3158833 original size:17 final size:17
Alignment explanation
Indices: 3158791--3158850 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
3158781 TTAATTTTAT
*
3158791 ATTTTATAGATTTTATACAC
1 ATTTT-TAGATTTTA-A-AG
*
3158811 ATTTTTATATTTTAAAG
1 ATTTTTAGATTTTAAAG
* *
3158828 ATTTTTAGATTTTTATG
1 ATTTTTAGATTTTAAAG
3158845 ATTTTT
1 ATTTTT
3158851 TTGGATTTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
17 21 0.60
18 1 0.03
19 8 0.23
20 5 0.14
ACGTcount: A:0.30, C:0.03, G:0.07, T:0.60
Consensus pattern (17 bp):
ATTTTTAGATTTTAAAG
Found at i:3159768 original size:12 final size:12
Alignment explanation
Indices: 3159753--3159800 Score: 53
Period size: 12 Copynumber: 4.1 Consensus size: 12
3159743 CATAAACTCT
3159753 AACACCATCTCC
1 AACACCATCTCC
*
3159765 AACACCAAC-CC
1 AACACCATCTCC
* *
3159776 GACCCCATCTCC
1 AACACCATCTCC
*
3159788 AACTCCATCTCC
1 AACACCATCTCC
3159800 A
1 A
3159801 GCTTCAACAT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
11 8 0.28
12 21 0.72
ACGTcount: A:0.31, C:0.52, G:0.02, T:0.15
Consensus pattern (12 bp):
AACACCATCTCC
Found at i:3163465 original size:229 final size:227
Alignment explanation
Indices: 3163060--3163508 Score: 783
Period size: 229 Copynumber: 2.0 Consensus size: 227
3163050 GTAAATTATC
* * * *
3163060 TATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAATATATTTATTATTATCTTTAGT
1 TATCATTTTTATAAAAGTGTACATACTTATTTCACTGTGAAAACATATTTATTATTATATTTAGT
*
3163125 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTT
66 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATATTT
3163190 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTG
131 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTG
3163255 AAACATAAATTACATAACTTTCAAAAAAGTATA
196 AAACATAAATTACATAACTTT-AAAAAAGTATA
*
3163288 TATCATTTTTATAAAAGTGTACATACTTATTTCACTGTTGAAAACATATTTATTATTATATTTGG
1 TATCATTTTTATAAAAGTGTACATACTTATTTCACTG-TGAAAACATATTTATTATTATATTTAG
*
3163353 TTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAAT-ATAAT
65 TTAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAT-AT
* *
3163417 TTTGTGTAAATTAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAATAAAT
129 TTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAT
3163482 TGAAACATAAATTACATAACTTTAAAA
194 TGAAACATAAATTACATAACTTTAAAA
3163509 GCAGTTTTAA
Statistics
Matches: 210, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
228 41 0.20
229 169 0.80
ACGTcount: A:0.45, C:0.08, G:0.07, T:0.40
Consensus pattern (227 bp):
TATCATTTTTATAAAAGTGTACATACTTATTTCACTGTGAAAACATATTTATTATTATATTTAGT
TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATATTT
TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTG
AAACATAAATTACATAACTTTAAAAAAGTATA
Found at i:3163597 original size:20 final size:19
Alignment explanation
Indices: 3163574--3163619 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 19
3163564 CGATATACCA
3163574 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
3163594 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
3163614 GGTAAA
1 GGTAAA
3163620 TTTAAAAGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.54, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:3163764 original size:20 final size:19
Alignment explanation
Indices: 3163741--3163787 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 19
3163731 CGATATAACA
3163741 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
3163761 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
3163781 GGTAAAA
1 GGTAAAA
3163788 TGATACCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.55, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:3163789 original size:17 final size:18
Alignment explanation
Indices: 3163745--3163792 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 18
3163735 ATAACAGGTA
3163745 AAAATATGATAAAACCGGT
1 AAAA-ATGATAAAACCGGT
3163764 AACAAAATGATAAAACCGGT
1 -A-AAAATGATAAAACCGGT
3163784 -AAAATGATA
1 AAAAATGATA
3163793 CCGGATATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
17 9 0.33
20 15 0.56
21 3 0.11
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.19
Consensus pattern (18 bp):
AAAAATGATAAAACCGGT
Found at i:3166067 original size:21 final size:21
Alignment explanation
Indices: 3166020--3166084 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
3166010 AAGACAATCA
* *
3166020 AGAGTCGAAGAGAAACTTGATC
1 AGAGTCGAAGAGAAACTCGA-G
*
3166042 A-AGTCGTAGAGAAACTCGAG
1 AGAGTCGAAGAGAAACTCGAG
* *
3166062 AGAGTCGAAGATACACTCGAG
1 AGAGTCGAAGAGAAACTCGAG
3166083 AG
1 AG
3166085 GAATAAGGGG
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
20 1 0.03
21 34 0.94
22 1 0.03
ACGTcount: A:0.40, C:0.15, G:0.29, T:0.15
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTCGAG
Found at i:3166160 original size:33 final size:33
Alignment explanation
Indices: 3166118--3166183 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
3166108 AAATAGATGG
*
3166118 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
3166151 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
3166184 TATTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:3167999 original size:19 final size:19
Alignment explanation
Indices: 3167975--3168023 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
3167965 AATGTCGAGT
3167975 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
3167994 TAATTTTGTATATGATTTA
1 TAATTTTGTATAAGATTTA
*
3168013 TATTTTTGTAT
1 TAATTTTGTAT
3168024 GTGAATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.31, C:0.00, G:0.10, T:0.59
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:3168032 original size:18 final size:19
Alignment explanation
Indices: 3167975--3168035 Score: 70
Period size: 19 Copynumber: 3.3 Consensus size: 19
3167965 AATGTCGAGT
* *
3167975 TAATTTTGTATAAGATTTA
1 TAATTTTGTATATGATATA
*
3167994 TAATTTTGTATATGATTTA
1 TAATTTTGTATATGATATA
* *
3168013 TATTTTTGTATGTGA-ATA
1 TAATTTTGTATATGATATA
3168031 TAATT
1 TAATT
3168036 ATGAATGAGA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
18 6 0.16
19 31 0.84
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.56
Consensus pattern (19 bp):
TAATTTTGTATATGATATA
Found at i:3168714 original size:198 final size:198
Alignment explanation
Indices: 3168142--3169703 Score: 3049
Period size: 198 Copynumber: 7.9 Consensus size: 198
3168132 CAATATGGCC
* *
3168142 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCAATCCCAAAATCATCGAAC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAAC
3168207 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
3168272 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAA
130 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAA
3168337 TGGA
195 TGGA
3168341 AACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
3168405 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
3168470 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
3168535 GGA
196 GGA
3168538 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
3168603 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
3168668 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
3168733 GGA
196 GGA
3168736 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
* *
3168801 CAGAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGCACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
3168866 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
3168931 GGA
196 GGA
3168934 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
3168999 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
3169064 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
*
3169129 AGA
196 GGA
3169132 AACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
3169196 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
3169261 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
3169326 GGA
196 GGA
3169329 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
3169394 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
3169459 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
3169524 GGA
196 GGA
3169527 AACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
3169591 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
3169656 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACT
3169704 AATTTAAATA
Statistics
Matches: 1353, Mismatches: 8, Indels: 6
0.99 0.01 0.00
Matches are distributed among these distances:
197 534 0.39
198 785 0.58
199 34 0.03
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (198 bp):
AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
GGA
Found at i:3169275 original size:593 final size:593
Alignment explanation
Indices: 3168142--3169703 Score: 3054
Period size: 593 Copynumber: 2.6 Consensus size: 593
3168132 CAATATGGCC
* *
3168142 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCAATCCCAAAATCATCGAAC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAAC
3168207 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
3168272 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAA
130 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAA
3168337 TGGAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAGTGTCGATCCCAAAATCATCGA
195 TGGAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAGTGTCGATCCCAAAATCATCGA
3168402 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGA
260 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGA
3168467 GAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATG
325 GAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATG
*
3168532 AATGGAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCAT
390 AATAGAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCAT
3168597 CGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTA
455 CGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTA
3168662 TGAGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGA
520 TGAGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGA
3168727 ATGAATGGA
585 ATGAATGGA
3168736 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
* *
3168801 CAGAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGCACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
3168866 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
3168931 GGAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGA
196 GGAAACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCGA
3168996 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGA
260 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGA
3169061 GAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATG
325 GAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATG
3169126 AATAGAAACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCAT
390 AATAGAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCAT
3169190 CGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTA
455 CGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTA
3169255 TGAGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGA
520 TGAGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGA
3169320 ATGAATGGA
585 ATGAATGGA
3169329 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
3169394 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
3169459 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
3169524 GGAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAGTGTCGATCCCAAAATCATCGAA
196 GGAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAGTGTCGATCCCAAAATCATCGAA
3169589 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
261 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
3169654 AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACT
326 AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACT
3169704 AATTTAAATA
Statistics
Matches: 960, Mismatches: 7, Indels: 4
0.99 0.01 0.00
Matches are distributed among these distances:
592 142 0.15
593 588 0.61
594 230 0.24
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (593 bp):
AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
GGAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAGTGTCGATCCCAAAATCATCGAA
CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGA
ATAGAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATC
GAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTAT
GAGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAA
TGAATGGA
Found at i:3169496 original size:395 final size:395
Alignment explanation
Indices: 3168142--3169703 Score: 3061
Period size: 395 Copynumber: 3.9 Consensus size: 395
3168132 CAATATGGCC
* *
3168142 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCAATCCCAAAATCATCGAAC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAAC
3168207 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
3168272 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAA
130 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAA
3168337 TGGAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAGTGTCGATCCCAAAATCATCGA
195 TGGAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAGTGTCGATCCCAAAATCATCGA
3168402 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGA
260 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGA
3168467 GAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATG
325 GAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATG
3168532 AATGGA
390 AATGGA
3168538 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
3168603 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
3168668 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
3168733 GGAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGA
196 GGAAACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCGA
* *
3168798 ACCCAGAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGCACAATTATACCGGTTTTATGA
260 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGA
3168863 GAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATG
325 GAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATG
3168928 AATGGA
390 AATGGA
3168934 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
3168999 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
3169064 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
*
3169129 AGAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAGTGTCGATCCCAAAATCATCGAA
196 GGAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAGTGTCGATCCCAAAATCATCGAA
3169194 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
261 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
3169259 AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGA
326 AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGA
3169324 ATGGA
391 ATGGA
3169329 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
3169394 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
3169459 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
3169524 GGAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAGTGTCGATCCCAAAATCATCGAA
196 GGAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAGTGTCGATCCCAAAATCATCGAA
3169589 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
261 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
3169654 AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACT
326 AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACT
3169704 AATTTAAATA
Statistics
Matches: 1157, Mismatches: 8, Indels: 3
0.99 0.01 0.00
Matches are distributed among these distances:
395 731 0.63
396 426 0.37
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (395 bp):
AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
GGAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAGTGTCGATCCCAAAATCATCGAA
CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGA
ATGGA
Found at i:3171185 original size:3 final size:3
Alignment explanation
Indices: 3171177--3171251 Score: 78
Period size: 3 Copynumber: 25.0 Consensus size: 3
3171167 TGAAGCTGAC
* * * ** * *
3171177 GAT GAT GAT GAT GAT GAC GAT GAA GCT GGC GAT GAA GAT GAT GAC GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
*
3171225 GAT GAT GAT GAT GAT GAA GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT
3171252 CCAAACAAGT
Statistics
Matches: 57, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.35, C:0.05, G:0.35, T:0.25
Consensus pattern (3 bp):
GAT
Found at i:3172760 original size:183 final size:183
Alignment explanation
Indices: 3172448--3173141 Score: 1250
Period size: 183 Copynumber: 3.8 Consensus size: 183
3172438 CAAAGTTTTC
* * *
3172448 ACACTTT-TAATATTGTGTCTGTACTTTATGTCCAGAATGAAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
* *
3172512 AAAAAAGTGTCG--ATTGAAAAAACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAA
66 AAAAAAGTGTCGACATT---TACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAA
* *
3172575 TATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
128 TATAACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTTTATCG
3172631 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
*
3172696 AAAAAAGTGTCGACATTTACACATCGGAACCCATATTTATAATGTAATAGATAATTTTGTAATAT
66 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
3172761 AACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTTTATCG
131 AACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTTTATCG
*
3172814 ACACTTTCTAATATTGTGTCGGTACTTTATGTTCAGATTGGAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
3172879 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
66 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
3172944 AACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTTTATCG
131 AACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTTTATCG
*
3172997 ACACTTTCTAATATTGTGTCGGTACTTTATGTTCAGATTGGAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
3173062 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
66 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
3173127 AACCGGTATAAAAAT
131 AACCGGTATAAAAAT
3173142 GTGTCGATAC
Statistics
Matches: 498, Mismatches: 10, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
183 429 0.86
184 66 0.13
186 3 0.01
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.33
Consensus pattern (183 bp):
ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
AACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTTTATCG
Found at i:3173170 original size:22 final size:23
Alignment explanation
Indices: 3173137--3173179 Score: 79
Period size: 22 Copynumber: 1.9 Consensus size: 23
3173127 AACCGGTATA
3173137 AAAATGTGTCGATACTTTTTTAT
1 AAAATGTGTCGATACTTTTTTAT
3173160 AAAA-GTGTCGATACTTTTTT
1 AAAATGTGTCGATACTTTTTT
3173180 CACTGTGGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.30, C:0.09, G:0.14, T:0.47
Consensus pattern (23 bp):
AAAATGTGTCGATACTTTTTTAT
Found at i:3176337 original size:23 final size:23
Alignment explanation
Indices: 3176306--3176369 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
3176296 ATAGGTAAAC
*
3176306 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
3176329 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
3176352 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
3176370 TGGTTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:3176376 original size:23 final size:23
Alignment explanation
Indices: 3176306--3176378 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
3176296 ATAGGTAAAC
* **
3176306 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGTGCTT
*
3176329 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
3176352 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
3176375 ATAT
1 ATAT
3176379 TGTAAAGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
23 42 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:3176567 original size:29 final size:30
Alignment explanation
Indices: 3176524--3176590 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 30
3176514 GTTACGGTAT
* *
3176524 ATATTATTATTAAAT-TAAAA-ATTCTAAATA
1 ATATT-TTATAAAATATAAAACAATC-AAATA
3176554 ATATTTTATAAAATATAAAACAATCAAATA
1 ATATTTTATAAAATATAAAACAATCAAATA
*
3176584 ATTTTTT
1 ATATTTT
3176591 GTGCAAATGA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 8 0.25
30 21 0.66
31 3 0.09
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.43
Consensus pattern (30 bp):
ATATTTTATAAAATATAAAACAATCAAATA
Found at i:3176766 original size:23 final size:23
Alignment explanation
Indices: 3176735--3176798 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
3176725 ATAGGTAAAC
*
3176735 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
3176758 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
3176781 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
3176799 TGGTTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:3176805 original size:23 final size:23
Alignment explanation
Indices: 3176735--3176807 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
3176725 ATAGGTAAAC
* **
3176735 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGTGCTT
*
3176758 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
3176781 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
3176804 ATAT
1 ATAT
3176808 TGTAAAGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
23 42 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:3177007 original size:429 final size:429
Alignment explanation
Indices: 3176208--3177043 Score: 1604
Period size: 429 Copynumber: 1.9 Consensus size: 429
3176198 AATTCGCAGT
3176208 ACACTGTTAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATAA
1 ACACTGTTAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATAA
3176273 AAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGT
66 AAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGT
3176338 AATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTATA
131 AATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTATA
3176403 AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTA
196 AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTA
* *
3176468 AGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTA
261 AGATATTAATTTAGTAATTATAGGCGTATAATGATTTATTTTTTACGTTACGATATATATTATTA
3176533 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAACAATCAAATAATTTTTTGTGCAAA
326 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAACAATCAAATAATTTTTTGTGCAAA
3176598 TGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
391 TGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
3176637 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTT-AAAAAAGTATCGATCCTTTTTATA
1 ACACTGTT-AAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
*
3176701 AAAAGTATTGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
65 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
3176766 TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
130 TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
3176831 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
195 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
3176896 AAGATATTAATTTAGTAATTATAGGCGTATAATGATTTATTTTTTACGTTACGATATATATTATT
260 AAGATATTAATTTAGTAATTATAGGCGTATAATGATTTATTTTTTACGTTACGATATATATTATT
*
3176961 ATTAAATTAAAAATTCTAAATATTATTTTAT-AAATATCAAAACAATCAAATAATTTTTTGTGCA
325 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATAT-AAAACAATCAAATAATTTTTTGTGCA
3177025 AATGAAATTATTAAATCAA
389 AATGAAATTATTAAATCAA
3177044 ATAATTCAAA
Statistics
Matches: 401, Mismatches: 4, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
428 6 0.01
429 364 0.91
430 31 0.08
ACGTcount: A:0.39, C:0.08, G:0.13, T:0.40
Consensus pattern (429 bp):
ACACTGTTAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATAA
AAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATGT
AATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTATA
AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTA
AGATATTAATTTAGTAATTATAGGCGTATAATGATTTATTTTTTACGTTACGATATATATTATTA
TTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAACAATCAAATAATTTTTTGTGCAAA
TGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
Found at i:3177109 original size:25 final size:25
Alignment explanation
Indices: 3177075--3177125 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
3177065 ACAACAAATC
*
3177075 AATTAAACATTGTTGTGGGTACATT
1 AATTAAACATTGTTATGGGTACATT
*
3177100 AATTGAACATTGTTATGGGTACATT
1 AATTAAACATTGTTATGGGTACATT
3177125 A
1 A
3177126 TTTGGATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (25 bp):
AATTAAACATTGTTATGGGTACATT
Found at i:3177395 original size:18 final size:18
Alignment explanation
Indices: 3177374--3177410 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
3177364 GTAATTGGAG
3177374 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
3177392 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
3177410 T
1 T
3177411 ATATATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:3177418 original size:24 final size:24
Alignment explanation
Indices: 3177366--3177412 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
3177356 TTTCATATGT
* *
3177366 AATTGGAGTTTGAATTTAAATTTC
1 AATTTGAGTTTGAATTTAAATATC
*
3177390 AATTTGAGTTTGAATTTCAATAT
1 AATTTGAGTTTGAATTTAAATAT
3177413 ATATTTCGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTAAATATC
Found at i:3177712 original size:39 final size:39
Alignment explanation
Indices: 3177669--3177794 Score: 234
Period size: 39 Copynumber: 3.2 Consensus size: 39
3177659 TCCGATGCTC
* *
3177669 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
3177708 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
1 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
3177747 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
1 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
3177786 ATCAAAATC
1 ATCAAAATC
3177795 TACAACTTGA
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 85 1.00
ACGTcount: A:0.48, C:0.21, G:0.13, T:0.17
Consensus pattern (39 bp):
ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
Found at i:3178234 original size:23 final size:23
Alignment explanation
Indices: 3178199--3178262 Score: 83
Period size: 23 Copynumber: 2.8 Consensus size: 23
3178189 ATAGGTAAAC
* *
3178199 ATATGATGCAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
3178222 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
3178245 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
3178263 TGGTTATATT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.36, C:0.08, G:0.20, T:0.36
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:3178269 original size:23 final size:23
Alignment explanation
Indices: 3178220--3178271 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
3178210 TAGGTAGCCC
*
3178220 TTATATAATGTAATAGGTATCGT
1 TTATATAATGTAATAGGTATCGG
3178243 TTATATAATGTAATAGGTAGT-GG
1 TTATATAATGTAATAGGTA-TCGG
3178266 TTATAT
1 TTATAT
3178272 TGTAAAGTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.35, C:0.02, G:0.19, T:0.44
Consensus pattern (23 bp):
TTATATAATGTAATAGGTATCGG
Found at i:3181856 original size:21 final size:21
Alignment explanation
Indices: 3181823--3181871 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
3181813 TGCCGCTGGG
* *
3181823 GGCGGAGGGGGTGGTGGAAGT
1 GGCGGAGGAGGTGGCGGAAGT
* *
3181844 GGCGGCGGAGGTGGCGGAGGT
1 GGCGGAGGAGGTGGCGGAAGT
3181865 GGCGGAG
1 GGCGGAG
3181872 CTTTTGTTCT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.12, C:0.10, G:0.67, T:0.10
Consensus pattern (21 bp):
GGCGGAGGAGGTGGCGGAAGT
Found at i:3181859 original size:9 final size:9
Alignment explanation
Indices: 3181847--3181871 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
3181837 TGGAAGTGGC
3181847 GGCGGAGGT
1 GGCGGAGGT
3181856 GGCGGAGGT
1 GGCGGAGGT
3181865 GGCGGAG
1 GGCGGAG
3181872 CTTTTGTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.12, G:0.68, T:0.08
Consensus pattern (9 bp):
GGCGGAGGT
Found at i:3185382 original size:74 final size:74
Alignment explanation
Indices: 3185302--3185581 Score: 366
Period size: 75 Copynumber: 3.8 Consensus size: 74
3185292 TTAAAAACGA
* * * * * * * *
3185302 CTAATAATGTAAATGGTAAAAAAAATATGTGTTATCTATTATATTAAACTACATACCGGTTTTTT
1 CTAATAATGTAAACGGTAAAAAAAATATGCGCTACCTATTACATTAAAATACCTACCGATTTTTT
*
3185367 TTAAGGTTG
66 TAAAGGTTG
*
3185376 CTAATAATGTAAACGGT-AAAAAAATA-GACGCTACCTATTACATTAAAATACCTACCGATTTGT
1 CTAATAATGTAAACGGTAAAAAAAATATG-CGCTACCTATTACATTAAAATACCTACCGATTTTT
**
3185439 TTAAATATTG
65 TTAAAGGTTG
* *
3185449 CTAATAATGTAAACGATAAAATAAAATAAGCGCTACCTATTACATTAAAATACCTACCGATTTTT
1 CTAATAATGTAAACGGTAAAA-AAAATATGCGCTACCTATTACATTAAAATACCTACCGATTTTT
3185514 TTAAAGGTTG
65 TTAAAGGTTG
* * * *
3185524 TTAATAATGTAAACGGTAAAAAAATTATGCGCTACCTATTACATTAAACTATCTACCG
1 CTAATAATGTAAACGGTAAAAAAAATATGCGCTACCTATTACATTAAAATACCTACCG
3185582 GATATGTTGA
Statistics
Matches: 180, Mismatches: 22, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
72 1 0.01
73 59 0.33
74 52 0.29
75 67 0.37
76 1 0.01
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (74 bp):
CTAATAATGTAAACGGTAAAAAAAATATGCGCTACCTATTACATTAAAATACCTACCGATTTTTT
TAAAGGTTG
Found at i:3185529 original size:148 final size:148
Alignment explanation
Indices: 3185302--3185581 Score: 402
Period size: 148 Copynumber: 1.9 Consensus size: 148
3185292 TTAAAAACGA
* * * * * * * * *
3185302 CTAATAATGTAAATGGTAAAAAAAATATGTGTTATCTATTATATTAAACTACATACCGGTTTTTT
1 CTAATAATGTAAACGATAAAAAAAATAAGCGCTACCTATTACATTAAAATACATACCGATTTTTT
*
3185367 TTAAGGTTGCTAATAATGTAAACGGTAAAAAAA-TA-GACGCTACCTATTACATTAAAATACCTA
66 TAAAGGTTGCTAATAATGTAAACGGTAAAAAAATTATG-CGCTACCTATTACATTAAAATACCTA
3185430 CCGATTTGTTTAAATATTG
130 CCGATTTGTTTAAATATTG
*
3185449 CTAATAATGTAAACGATAAAATAAAATAAGCGCTACCTATTACATTAAAATACCTACCGATTTTT
1 CTAATAATGTAAACGATAAAA-AAAATAAGCGCTACCTATTACATTAAAATACATACCGATTTTT
* * *
3185514 TTAAAGGTTGTTAATAATGTAAACGGTAAAAAAATTATGCGCTACCTATTACATTAAACTATCTA
65 TTAAAGGTTGCTAATAATGTAAACGGTAAAAAAATTATGCGCTACCTATTACATTAAAATACCTA
3185579 CCG
130 CCG
3185582 GATATGTTGA
Statistics
Matches: 116, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
147 19 0.16
148 67 0.58
149 29 0.25
150 1 0.01
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (148 bp):
CTAATAATGTAAACGATAAAAAAAATAAGCGCTACCTATTACATTAAAATACATACCGATTTTTT
TAAAGGTTGCTAATAATGTAAACGGTAAAAAAATTATGCGCTACCTATTACATTAAAATACCTAC
CGATTTGTTTAAATATTG
Found at i:3185859 original size:112 final size:112
Alignment explanation
Indices: 3185662--3185893 Score: 410
Period size: 112 Copynumber: 2.1 Consensus size: 112
3185652 TAGCGCCTAT
*
3185662 AAAGTATCAATACTTTATAAAAATGTATCGATACATAACAATATAACAGGTAAAAATATGACAAA
1 AAAGTATCAATACTTTATAAAAATGCATCGATACATAACAATATAACAGGTAAAAATATGACAAA
* *
3185727 ACCAGTTTCATTATGACAAAATCGGTAAAGAGCTATCGAATATGTTG
66 ACCAGTTTCATTATGACAAAATCGGTAAAGAGCTACCGAATATATTG
*
3185774 AAAGTATTAATACTTTATAAAAATGCATCGATACATAACAATATAACAGGTAAAAATATGACAAA
1 AAAGTATCAATACTTTATAAAAATGCATCGATACATAACAATATAACAGGTAAAAATATGACAAA
* *
3185839 ATCATTTTCATTATGACAAAATCGGTAAAGAGCTACCGAATATATTG
66 ACCAGTTTCATTATGACAAAATCGGTAAAGAGCTACCGAATATATTG
3185886 AAAGTATC
1 AAAGTATC
3185894 TATATTTTTT
Statistics
Matches: 113, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
112 113 1.00
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.28
Consensus pattern (112 bp):
AAAGTATCAATACTTTATAAAAATGCATCGATACATAACAATATAACAGGTAAAAATATGACAAA
ACCAGTTTCATTATGACAAAATCGGTAAAGAGCTACCGAATATATTG
Found at i:3186871 original size:19 final size:19
Alignment explanation
Indices: 3186843--3186884 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
3186833 TTTTTTTTAT
*
3186843 TTTTTAAT-AATAAAATAG
1 TTTTTAATAAAAAAAATAG
3186861 TTTTTATATAAAAAAAATAG
1 TTTTTA-ATAAAAAAAATAG
3186881 TTTT
1 TTTT
3186885 ATTACGAGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 6 0.29
19 2 0.10
20 13 0.62
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (19 bp):
TTTTTAATAAAAAAAATAG
Found at i:3191763 original size:17 final size:17
Alignment explanation
Indices: 3191743--3191775 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
3191733 AATTATTGGA
3191743 AATAAAA-AATTGAAAAT
1 AATAAAATAATT-AAAAT
3191760 AATAAAATAATTAAAA
1 AATAAAATAATTAAAA
3191776 GTTAAATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (17 bp):
AATAAAATAATTAAAAT
Found at i:3195383 original size:16 final size:16
Alignment explanation
Indices: 3195364--3195397 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
3195354 CAATATACGA
3195364 ATAAAAATATATTTAT
1 ATAAAAATATATTTAT
**
3195380 ATAAATGTATATTTAT
1 ATAAAAATATATTTAT
3195396 AT
1 AT
3195398 TTAGATGTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (16 bp):
ATAAAAATATATTTAT
Found at i:3195471 original size:16 final size:18
Alignment explanation
Indices: 3195439--3195472 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
3195429 TATTAATGTA
3195439 TGAATCATTTATATTTTT
1 TGAATCATTTATATTTTT
3195457 TGAAT-ATTT-TATTTTT
1 TGAATCATTTATATTTTT
3195473 AATAAGAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (18 bp):
TGAATCATTTATATTTTT
Found at i:3196145 original size:130 final size:130
Alignment explanation
Indices: 3195941--3196188 Score: 415
Period size: 130 Copynumber: 1.9 Consensus size: 130
3195931 AATTTTCTTC
* *
3195941 TAATTAGGTGGTGACATGTGTCACCAATAACATATATCATGATCATGTGTTAACACATGTCAGAT
1 TAATTAGGTGGTGACATGTGTCACCAATAACACATATCATGATCATGTGCTAACACATGTCAGAT
** * *
3196006 CCTGGTTAAATGATTAATTTATTTAATTTTATTTAATTTAGGACCAAATTGATAGCATATATAAA
66 CCTAATTAAATGATTAATTTATTAAATTCTATTTAATTTAGGACCAAATTGATAGCATATATAAA
* * *
3196071 TAATTAGGTGGTGACATGTGTCACCAATGACACGTGTCATGATCATGTGCTAACACATGTCAGAT
1 TAATTAGGTGGTGACATGTGTCACCAATAACACATATCATGATCATGTGCTAACACATGTCAGAT
3196136 CCTAATTAAATGATTAATTTATTAAATTCTATTTAATTTAGGACCAAATTGAT
66 CCTAATTAAATGATTAATTTATTAAATTCTATTTAATTTAGGACCAAATTGAT
3196189 TATATAAATA
Statistics
Matches: 109, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
130 109 1.00
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (130 bp):
TAATTAGGTGGTGACATGTGTCACCAATAACACATATCATGATCATGTGCTAACACATGTCAGAT
CCTAATTAAATGATTAATTTATTAAATTCTATTTAATTTAGGACCAAATTGATAGCATATATAAA
Found at i:3196635 original size:35 final size:35
Alignment explanation
Indices: 3196585--3196660 Score: 125
Period size: 35 Copynumber: 2.2 Consensus size: 35
3196575 AATTGAATTG
* *
3196585 AATTGAATTATTTTGGAATTTAGGGTTTAGAATGA
1 AATTGAATTACTTTGGAAATTAGGGTTTAGAATGA
*
3196620 AATTGAATTACTTTGGAAATTGGGGTTTAGAATGA
1 AATTGAATTACTTTGGAAATTAGGGTTTAGAATGA
3196655 AATTGA
1 AATTGA
3196661 GGATTGTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.36, C:0.01, G:0.24, T:0.39
Consensus pattern (35 bp):
AATTGAATTACTTTGGAAATTAGGGTTTAGAATGA
Found at i:3197601 original size:2 final size:2
Alignment explanation
Indices: 3197594--3197620 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
3197584 ATTTAAAAAT
3197594 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
3197621 TAAAAAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Done.