Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008053.1 Hibiscus syriacus cultivar Beakdansim tig00110548_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6772376
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 28 of 32
Found at i:5640453 original size:12 final size:12
Alignment explanation
Indices: 5640436--5640460 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
5640426 TGCCATGCAA
5640436 CACGTTCATTCT
1 CACGTTCATTCT
5640448 CACGTTCATTCT
1 CACGTTCATTCT
5640460 C
1 C
5640461 TCTGTTTGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.36, G:0.08, T:0.40
Consensus pattern (12 bp):
CACGTTCATTCT
Found at i:5649147 original size:21 final size:21
Alignment explanation
Indices: 5649104--5649148 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
5649094 TCATTTTTTT
**
5649104 AAATAATAATGTTAATTTAAA
1 AAATAATAATAATAATTTAAA
* *
5649125 AAATAATAATAATAGTTTTAA
1 AAATAATAATAATAATTTAAA
5649146 AAA
1 AAA
5649149 CTTGAAAGTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (21 bp):
AAATAATAATAATAATTTAAA
Found at i:5651017 original size:21 final size:21
Alignment explanation
Indices: 5650991--5651035 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
5650981 ACATAATCAA
*
5650991 ATGATGGCGTAGAATCCAGGG
1 ATGATGGCATAGAATCCAGGG
* *
5651012 ATGATGTCATTGAATCCAGGG
1 ATGATGGCATAGAATCCAGGG
5651033 ATG
1 ATG
5651036 TTGACAACGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.24
Consensus pattern (21 bp):
ATGATGGCATAGAATCCAGGG
Found at i:5654338 original size:21 final size:22
Alignment explanation
Indices: 5654298--5654340 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
5654288 TCACCAGCTT
5654298 TGACAAAGCGTCCTTTCACGCG
1 TGACAAAGCGTCCTTTCACGCG
5654320 TGACAAAGCGTCC-TTCACGCG
1 TGACAAAGCGTCCTTTCACGCG
5654341 CTTTCGCACA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.23, C:0.33, G:0.23, T:0.21
Consensus pattern (22 bp):
TGACAAAGCGTCCTTTCACGCG
Found at i:5668503 original size:14 final size:14
Alignment explanation
Indices: 5668484--5668524 Score: 68
Period size: 14 Copynumber: 3.1 Consensus size: 14
5668474 ATCGAATATA
5668484 ATTTGTAAAATCTT
1 ATTTGTAAAATCTT
5668498 ATTTGTAAAATC--
1 ATTTGTAAAATCTT
5668510 ATTTGTAAAATCTT
1 ATTTGTAAAATCTT
5668524 A
1 A
5668525 AAATTCATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 12 0.48
14 13 0.52
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.46
Consensus pattern (14 bp):
ATTTGTAAAATCTT
Found at i:5668515 original size:12 final size:13
Alignment explanation
Indices: 5668484--5668522 Score: 62
Period size: 12 Copynumber: 3.0 Consensus size: 13
5668474 ATCGAATATA
5668484 ATTTGTAAAATCTT
1 ATTTGTAAAATC-T
5668498 ATTTGTAAAATC-
1 ATTTGTAAAATCT
5668510 ATTTGTAAAATCT
1 ATTTGTAAAATCT
5668523 TAAAATTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.50
14 12 0.50
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (13 bp):
ATTTGTAAAATCT
Found at i:5672802 original size:64 final size:63
Alignment explanation
Indices: 5672727--5672869 Score: 155
Period size: 64 Copynumber: 2.2 Consensus size: 63
5672717 ATTGTTTAAG
* * *
5672727 GTGCATCGATGCAT-GAATTTAAATAGAAAACATCAAATATGATTTATGCATCGATGCATAAGGA
1 GTGCATCGATGCATCCAA-TTAAATA-AAAACATCAAATAGGATTTATCCATCGATGCATAAGGA
* * * * *
5672791 GTGCATGGATGCATCCCCATTAAATACAAACATCGAATAGGATTTATCCATCGATGCAT-GGTGT
1 GTGCATCGATGCAT-CCAATTAAATAAAAACATCAAATAGGATTTATCCATCGATGCATAAG-G-
5672855 A
63 A
5672856 GTGCATCGATGCAT
1 GTGCATCGATGCAT
5672870 ACCTTTATTA
Statistics
Matches: 66, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
63 1 0.02
64 43 0.65
65 21 0.32
66 1 0.02
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (63 bp):
GTGCATCGATGCATCCAATTAAATAAAAACATCAAATAGGATTTATCCATCGATGCATAAGGA
Found at i:5673384 original size:18 final size:18
Alignment explanation
Indices: 5673361--5673395 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
5673351 CTAGGAGATT
5673361 TGAACATA-AATGATAAGA
1 TGAACATATAA-GATAAGA
5673379 TGAACATATAAGATAAG
1 TGAACATATAAGATAAG
5673396 CTAGATGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.54, C:0.06, G:0.17, T:0.23
Consensus pattern (18 bp):
TGAACATATAAGATAAGA
Found at i:5674298 original size:149 final size:149
Alignment explanation
Indices: 5674125--5674588 Score: 815
Period size: 149 Copynumber: 3.1 Consensus size: 149
5674115 GAGTCGAGGG
5674125 TCTACGCGGTCCTTCGGGATATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACAT
1 TCTACGCGGTCCTTCGGGATATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACAT
5674190 ATATGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATTA
66 ATATGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATTA
5674255 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
5674274 TCTACGCGGTCCTTCGGGATATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACAT
1 TCTACGCGGTCCTTCGGGATATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACAT
5674339 ATATGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATTA
66 ATATGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATTA
5674404 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
* * * **
5674423 TCTACGTGGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTTGAAAGACACAT
1 TCTACGCGGTCCTTCGGGATATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACAT
* * *
5674488 ACT-TGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTACGTATGGACATTATT
66 A-TATGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATT
5674552 ATATGGCACTACGGTGCAAT
130 ATATGGCACTACGGTGCAAT
*
5674572 TATACGCGG-CACTTCGG
1 TCTACGCGGTC-CTTCGG
5674589 TGCAATTATA
Statistics
Matches: 303, Mismatches: 10, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
148 1 0.00
149 301 0.99
150 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (149 bp):
TCTACGCGGTCCTTCGGGATATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACAT
ATATGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATTA
TATGGCACTACGGTGCAAT
Found at i:5674584 original size:23 final size:23
Alignment explanation
Indices: 5674556--5674600 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
5674546 ATTATTATAT
5674556 GGCACTACGGTGCAATTATACGC
1 GGCACTACGGTGCAATTATACGC
*
5674579 GGCACTTCGGTGCAATTATACG
1 GGCACTACGGTGCAATTATACG
5674601 AGCTGTGGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGC
Found at i:5677895 original size:65 final size:65
Alignment explanation
Indices: 5677735--5677895 Score: 195
Period size: 64 Copynumber: 2.5 Consensus size: 65
5677725 TTGTTTAAGG
* * * ** *
5677735 TGCATCGATGCACATGCAGTGCATCGATGCAT--GAATTTAAATAGAAAACATCGAATATGATTT
1 TGCATCGATGCATAAGGAGTGCATCGATGCATCCCCA-TTAAATAGAAAACATCGAATAGGATTT
5677798 A
65 A
*
5677799 TGCATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATA-CAAACATCGAATAGGATTTA
1 TGCATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATAGAAAACATCGAATAGGATTTA
*
5677863 TGCATCGATGCAT-GGTGTAGTGCATCGATGCAT
1 TGCATCGATGCATAAG-G-AGTGCATCGATGCAT
5677896 ACCTTCATTA
Statistics
Matches: 85, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
63 1 0.01
64 61 0.72
65 22 0.26
66 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (65 bp):
TGCATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATAGAAAACATCGAATAGGATTTA
Found at i:5678410 original size:18 final size:18
Alignment explanation
Indices: 5678387--5678421 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
5678377 CTAGGAGATT
5678387 TGAACATA-AATGATAAGA
1 TGAACATATAA-GATAAGA
5678405 TGAACATATAAGATAAG
1 TGAACATATAAGATAAG
5678422 CTAGATGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.54, C:0.06, G:0.17, T:0.23
Consensus pattern (18 bp):
TGAACATATAAGATAAGA
Found at i:5679614 original size:149 final size:149
Alignment explanation
Indices: 5679151--5679603 Score: 836
Period size: 149 Copynumber: 3.0 Consensus size: 149
5679141 GAATCGAGGG
5679151 TCTACGCGGTCCTTCGGGATATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACAT
1 TCTACGCGGTCCTTCGGGATATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACAT
5679216 ATATGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATTA
66 ATATGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATTA
5679281 TATGGCACTACGGTGCAAT
131 TATGGCACTACGGTGCAAT
5679300 TCTACGCGGTCCTTCGGGATATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACAT
1 TCTACGCGGTCCTTCGGGATATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACAT
5679365 ATATGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATTA
66 ATATGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATTA
*
5679430 TATGGCACTATGGTGCAAT
131 TATGGCACTACGGTGCAAT
* * **
5679449 TCTACGCGGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTTGAAAGACACAT
1 TCTACGCGGTCCTTCGGGATATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACAT
*
5679514 ACT-TGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATTATT
66 A-TATGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATT
5679578 ATATGGCACTACGGTGCAAT
130 ATATGGCACTACGGTGCAAT
5679598 TCTACG
1 TCTACG
5679604 TGGCACTTCG
Statistics
Matches: 296, Mismatches: 7, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
149 295 1.00
150 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (149 bp):
TCTACGCGGTCCTTCGGGATATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACAT
ATATGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATTA
TATGGCACTACGGTGCAAT
Found at i:5679615 original size:23 final size:23
Alignment explanation
Indices: 5679581--5679626 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
5679571 CATTATTATA
*
5679581 TGGCACTACGGTGCAATTCTACG
1 TGGCACTACGGTGCAATTATACG
* *
5679604 TGGCACTTCGGTGTAATTATACG
1 TGGCACTACGGTGCAATTATACG
5679627 AGCTGTGGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (23 bp):
TGGCACTACGGTGCAATTATACG
Found at i:5683156 original size:22 final size:21
Alignment explanation
Indices: 5683114--5683153 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
5683104 TGAGTTTTTT
*
5683114 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
5683135 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
5683154 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:5685423 original size:12 final size:12
Alignment explanation
Indices: 5685406--5685455 Score: 82
Period size: 12 Copynumber: 4.0 Consensus size: 12
5685396 ATCGAATATA
5685406 ATTTGTAAAATC
1 ATTTGTAAAATC
5685418 ATTTGTAAAATC
1 ATTTGTAAAATC
5685430 TTATTTGTAAAATC
1 --ATTTGTAAAATC
5685444 ATTTGTAAAATC
1 ATTTGTAAAATC
5685456 TTAAAATTCA
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
12 24 0.67
14 12 0.33
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (12 bp):
ATTTGTAAAATC
Found at i:5685442 original size:26 final size:26
Alignment explanation
Indices: 5685406--5685458 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5685396 ATCGAATATA
5685406 ATTTGTAAAATCATTTGTAAAATCTT
1 ATTTGTAAAATCATTTGTAAAATCTT
5685432 ATTTGTAAAATCATTTGTAAAATCTT
1 ATTTGTAAAATCATTTGTAAAATCTT
5685458 A
1 A
5685459 AAATTCATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.45
Consensus pattern (26 bp):
ATTTGTAAAATCATTTGTAAAATCTT
Found at i:5700457 original size:4 final size:4
Alignment explanation
Indices: 5700448--5700472 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
5700438 ATAGATGTGG
5700448 TTGC TTGC TTGC TTGC TTGC TTGC T
1 TTGC TTGC TTGC TTGC TTGC TTGC T
5700473 AAGCCATTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.24, G:0.24, T:0.52
Consensus pattern (4 bp):
TTGC
Found at i:5704256 original size:24 final size:24
Alignment explanation
Indices: 5704224--5704285 Score: 97
Period size: 24 Copynumber: 2.6 Consensus size: 24
5704214 TTGCTGACTA
*
5704224 GCAGCTGCTCTTTCTCGAGCCTCT
1 GCAGCTGCTCTCTCTCGAGCCTCT
5704248 GCAGCTGCTCTCTCTCGAGCCTCT
1 GCAGCTGCTCTCTCTCGAGCCTCT
* *
5704272 GCAGCAGCCCTCTC
1 GCAGCTGCTCTCTC
5704286 CACAGCAGCT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.10, C:0.42, G:0.21, T:0.27
Consensus pattern (24 bp):
GCAGCTGCTCTCTCTCGAGCCTCT
Found at i:5709406 original size:29 final size:29
Alignment explanation
Indices: 5709364--5709455 Score: 157
Period size: 29 Copynumber: 3.2 Consensus size: 29
5709354 AGAAGAAAAG
*
5709364 TGATACGTCCAGTCTTAGGGAAACCAAAT
1 TGATACCTCCAGTCTTAGGGAAACCAAAT
5709393 TGATACCTCCAGTCTTAGGGAAACCAAAT
1 TGATACCTCCAGTCTTAGGGAAACCAAAT
* *
5709422 TGTTACCTCCAGTCTTAGGGACACCAAAT
1 TGATACCTCCAGTCTTAGGGAAACCAAAT
5709451 TGATA
1 TGATA
5709456 GGTGGTCTGA
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 59 1.00
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (29 bp):
TGATACCTCCAGTCTTAGGGAAACCAAAT
Found at i:5712630 original size:20 final size:23
Alignment explanation
Indices: 5712591--5712632 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 23
5712581 CTTGAAATAT
5712591 TGTACATCAATATATTTAATTAA
1 TGTACATCAATATATTTAATTAA
5712614 TGTACAT-AAT-T-TTTAATTA
1 TGTACATCAATATATTTAATTA
5712633 TAGATACATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 8 0.42
21 1 0.05
22 3 0.16
23 7 0.37
ACGTcount: A:0.40, C:0.07, G:0.05, T:0.48
Consensus pattern (23 bp):
TGTACATCAATATATTTAATTAA
Found at i:5720316 original size:30 final size:30
Alignment explanation
Indices: 5720280--5720336 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
5720270 TGTATGGGTT
5720280 TACATTCACATACATACATGCAGCAACTGC
1 TACATTCACATACATACATGCAGCAACTGC
5720310 TACATTCACATACATACATGCAGCAAC
1 TACATTCACATACATACATGCAGCAAC
5720337 CGCGTGAACG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.30, G:0.09, T:0.23
Consensus pattern (30 bp):
TACATTCACATACATACATGCAGCAACTGC
Found at i:5721118 original size:82 final size:80
Alignment explanation
Indices: 5720901--5721173 Score: 329
Period size: 81 Copynumber: 3.4 Consensus size: 80
5720891 ATGCATAATG
* *
5720901 GTGGTGCATTATCATCTTCTGCAATTTTTCAGAGGTCATTCAATGCATAATTTAAACAACTTTTT
1 GTGGTGCATTATCATCTTCTGCAACTTTT-AGAGGTCATTCAATGCATAATTTAAACAACTTTTC
*
5720966 AGAGAACGAGTGAAATA
65 AG-GAACAAGTGAAATA
* * ** * * *
5720983 AT-GTACATTATCATCTTCTATAAAATTTTAGAGGTCATTTAATGCATAATTTAAATAACTTTTC
1 GTGGTGCATTATCATCTTCT-GCAACTTTTAGAGGTCATTCAATGCATAATTTAAACAACTTTTC
*
5721047 AGGCAACAAATGAAATA
65 AGG-AACAAGTGAAATA
* *
5721064 GTGGTGCAGTACCATCTTCTGCAACTTTTATGAGGTCATTCAATGCATAATTTAAACAA-TTTTC
1 GTGGTGCATTATCATCTTCTGCAACTTTTA-GAGGTCATTCAATGCATAATTTAAACAACTTTTC
5721128 A-GAA-AATTGGTGAAATA
65 AGGAACAA---GTGAAATA
5721145 GTGGTGCATTATCATCTTCTGCAACTTTT
1 GTGGTGCATTATCATCTTCTGCAACTTTT
5721174 CAGTGATGTA
Statistics
Matches: 162, Mismatches: 22, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
78 2 0.01
79 2 0.01
80 2 0.01
81 109 0.67
82 47 0.29
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.37
Consensus pattern (80 bp):
GTGGTGCATTATCATCTTCTGCAACTTTTAGAGGTCATTCAATGCATAATTTAAACAACTTTTCA
GGAACAAGTGAAATA
Found at i:5722993 original size:19 final size:19
Alignment explanation
Indices: 5722946--5722994 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
5722936 TATTTGTTTC
*
5722946 TATTTGTTAAAAAATAAAT
1 TATTTGATAAAAAATAAAT
* **
5722965 TATTTAATAAAAAATATTT
1 TATTTGATAAAAAATAAAT
*
5722984 TGTTTGATAAA
1 TATTTGATAAA
5722995 TATAAAAATA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (19 bp):
TATTTGATAAAAAATAAAT
Found at i:5732399 original size:3 final size:3
Alignment explanation
Indices: 5732391--5732419 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
5732381 TAAGCCAACT
5732391 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
5732420 TTTTTATACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:5737802 original size:41 final size:41
Alignment explanation
Indices: 5737710--5737824 Score: 113
Period size: 41 Copynumber: 2.8 Consensus size: 41
5737700 GAAGTTTAGT
* ** * **
5737710 GGATTCACCCTTTGGGATGAACTTCATTTTAGATTACCATT
1 GGATTCACCCTTTGGGATGAATTTCATTTCGGAATACCAAG
* * *
5737751 GAATTTACCCTTTGGGATGAATTTCATTTCGGAATATCAAG
1 GGATTCACCCTTTGGGATGAATTTCATTTCGGAATACCAAG
* * * *
5737792 GGATTCACCCTTCGAGATAAATTTCACTTCGGA
1 GGATTCACCCTTTGGGATGAATTTCATTTCGGA
5737825 TAATCAATGA
Statistics
Matches: 59, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
41 59 1.00
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (41 bp):
GGATTCACCCTTTGGGATGAATTTCATTTCGGAATACCAAG
Found at i:5748103 original size:59 final size:59
Alignment explanation
Indices: 5748035--5748164 Score: 158
Period size: 60 Copynumber: 2.2 Consensus size: 59
5748025 ATTTTATTAT
*
5748035 TATTTTAATTT-CACATTAAATTAAAATTTTCATTTTAAATTGATCCTG-AAACTTTTTA-A
1 TATTTTAATTTAC-CATTAAACTAAAATTTTCATTTTAAATTGAT-CTGTAAAC-TTTTAGA
* * * *
5748094 TATTCTAATTGTACCTTTAAACTATAATTTTTATTTTAAATTGATCTGTAAACTTTTAGA
1 TATTTTAATT-TACCATTAAACTAAAATTTTCATTTTAAATTGATCTGTAAACTTTTAGA
5748154 TATTTTAATTT
1 TATTTTAATTT
5748165 TATACCTAAA
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
59 18 0.30
60 42 0.69
61 1 0.02
ACGTcount: A:0.35, C:0.09, G:0.05, T:0.52
Consensus pattern (59 bp):
TATTTTAATTTACCATTAAACTAAAATTTTCATTTTAAATTGATCTGTAAACTTTTAGA
Found at i:5748130 original size:60 final size:60
Alignment explanation
Indices: 5748050--5748163 Score: 160
Period size: 60 Copynumber: 1.9 Consensus size: 60
5748040 TAATTTCACA
*
5748050 TTAAATTAAAATTTTCATTTTAAATTGATCCTG-AAACTTTTTA-ATATTCTAATTGTACCT
1 TTAAACTAAAATTTTCATTTTAAATTGAT-CTGTAAAC-TTTTAGATATTCTAATTGTACCT
* * *
5748110 TTAAACTATAATTTTTATTTTAAATTGATCTGTAAACTTTTAGATATTTTAATT
1 TTAAACTAAAATTTTCATTTTAAATTGATCTGTAAACTTTTAGATATTCTAATT
5748164 TTATACCTAA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
59 8 0.17
60 40 0.83
ACGTcount: A:0.35, C:0.09, G:0.05, T:0.51
Consensus pattern (60 bp):
TTAAACTAAAATTTTCATTTTAAATTGATCTGTAAACTTTTAGATATTCTAATTGTACCT
Found at i:5748900 original size:17 final size:19
Alignment explanation
Indices: 5748874--5748913 Score: 57
Period size: 17 Copynumber: 2.2 Consensus size: 19
5748864 GACTCGAAAT
5748874 AATATATTTATT-AA-AAA
1 AATATATTTATTCAACAAA
*
5748891 AATATTTTTATTCAACAAA
1 AATATATTTATTCAACAAA
5748910 AATA
1 AATA
5748914 AAGATTTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 11 0.55
18 2 0.10
19 7 0.35
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (19 bp):
AATATATTTATTCAACAAA
Found at i:5758607 original size:19 final size:19
Alignment explanation
Indices: 5758579--5758616 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
5758569 TCCAAGTTCG
* *
5758579 CGTTGTGATTTTTTAAATT
1 CGTTGCGATTTTTCAAATT
5758598 CGTTGCGATTTTTCAAATT
1 CGTTGCGATTTTTCAAATT
5758617 TACGTTAGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.21, C:0.11, G:0.16, T:0.53
Consensus pattern (19 bp):
CGTTGCGATTTTTCAAATT
Found at i:5758659 original size:21 final size:21
Alignment explanation
Indices: 5758633--5758765 Score: 153
Period size: 21 Copynumber: 6.4 Consensus size: 21
5758623 AGTCCAAATT
*
5758633 CGTTGCGATAGTCCAAGTTCA
1 CGTTGCGATAGTCCAAGTTCG
5758654 CGTTGCGATAGTCCAAGTTCG
1 CGTTGCGATAGTCCAAGTTCG
*
5758675 CGTTGCGATAGTCGAAGTTCG
1 CGTTGCGATAGTCCAAGTTCG
* *
5758696 CATTGCGATAGTCGAAGTTCG
1 CGTTGCGATAGTCCAAGTTCG
* * ** *
5758717 CATTACGATTTTCCAAATT--
1 CGTTGCGATAGTCCAAGTTCG
*
5758736 CGTTGCGATAGTTCAAGTTCG
1 CGTTGCGATAGTCCAAGTTCG
*
5758757 CATTGCGAT
1 CGTTGCGAT
5758766 TTTCTAAAAT
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
19 13 0.14
21 82 0.86
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.32
Consensus pattern (21 bp):
CGTTGCGATAGTCCAAGTTCG
Found at i:5759202 original size:19 final size:19
Alignment explanation
Indices: 5759178--5759286 Score: 92
Period size: 19 Copynumber: 5.4 Consensus size: 19
5759168 TTATTTTGGA
5759178 TTTTTCACTATCGCAACAC
1 TTTTTCACTATCGCAACAC
5759197 TTTTTCACTATCGCAACAACAC
1 TTTTTCACTATCG---CAACAC
* *
5759219 GTTTTTCAAACTCTCGTAACAC
1 -TTTTTC--ACTATCGCAACAC
* * *
5759241 ATTTTAACTATTGCAACAC
1 TTTTTCACTATCGCAACAC
* *
5759260 ATTTTAACTATCGCAACAC
1 TTTTTCACTATCGCAACAC
5759279 ATTTTTCA
1 -TTTTTCA
5759287 AAATCGTATT
Statistics
Matches: 73, Mismatches: 10, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
19 41 0.56
20 5 0.07
21 4 0.05
22 11 0.15
23 6 0.08
25 6 0.08
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.37
Consensus pattern (19 bp):
TTTTTCACTATCGCAACAC
Found at i:5766647 original size:16 final size:15
Alignment explanation
Indices: 5766610--5766657 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 15
5766600 TCGTTATAAA
5766610 TTTTATTATAAATT-T
1 TTTTATTAT-AATTAT
5766625 TTTTATTATAATTAT
1 TTTTATTATAATTAT
*
5766640 TGTTTATTATGATTAT
1 T-TTTATTATAATTAT
5766656 TT
1 TT
5766658 AAAAAAAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
14 4 0.13
15 12 0.40
16 14 0.47
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (15 bp):
TTTTATTATAATTAT
Found at i:5767832 original size:50 final size:50
Alignment explanation
Indices: 5767775--5767890 Score: 132
Period size: 50 Copynumber: 2.3 Consensus size: 50
5767765 CCCCTGTACC
* *
5767775 GCGCTATACCCCACGTGT-CA-GATAAACAGC-TATAGCGCGGAACAGGGGG
1 GCGCTATACCCCACGTGTAAACCAT-AACAGCATATAGCGCGGAACA-GGGG
** *
5767824 TGCGCTATA-CCCACGTGTAAACCATGTCAGCATATAGCGCGGTACAGGGG
1 -GCGCTATACCCCACGTGTAAACCATAACAGCATATAGCGCGGAACAGGGG
5767874 GCGCTATACCCCACGTG
1 GCGCTATACCCCACGTG
5767891 GCGCCAAATC
Statistics
Matches: 57, Mismatches: 5, Indels: 8
0.81 0.07 0.11
Matches are distributed among these distances:
49 17 0.30
50 25 0.44
51 15 0.26
ACGTcount: A:0.26, C:0.28, G:0.28, T:0.17
Consensus pattern (50 bp):
GCGCTATACCCCACGTGTAAACCATAACAGCATATAGCGCGGAACAGGGG
Found at i:5774939 original size:29 final size:29
Alignment explanation
Indices: 5774868--5774933 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 29
5774858 GCAATCGCTC
* *
5774868 AGGGTCCTCGATTTTTTTATATTTATAATT
1 AGGGTCCTC-AATTTTCTATATTTATAATT
**
5774898 AGGGTTTTCAATTTTCTATATTTATAATT
1 AGGGTCCTCAATTTTCTATATTTATAATT
5774927 AGGGTCC
1 AGGGTCC
5774934 CTAATTGTTA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
29 23 0.77
30 7 0.23
ACGTcount: A:0.24, C:0.11, G:0.15, T:0.50
Consensus pattern (29 bp):
AGGGTCCTCAATTTTCTATATTTATAATT
Found at i:5774949 original size:29 final size:28
Alignment explanation
Indices: 5774882--5774954 Score: 69
Period size: 29 Copynumber: 2.5 Consensus size: 28
5774872 TCCTCGATTT
**
5774882 TTTTAT-ATTTATAATTAGGGTTTTCAA
1 TTTTATAATTTATAATTAGGGTCCTCAA
*
5774909 TTTTCTATATTTATAATTAGGGTCC-CTAA
1 TTTTATA-ATTTATAATTAGGGTCCTC-AA
5774938 TTGTTATAATTTCATAA
1 TT-TTATAATTT-ATAA
5774955 AATTTTTAGT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
27 5 0.14
28 1 0.03
29 23 0.62
30 8 0.22
ACGTcount: A:0.30, C:0.08, G:0.10, T:0.52
Consensus pattern (28 bp):
TTTTATAATTTATAATTAGGGTCCTCAA
Found at i:5777212 original size:13 final size:13
Alignment explanation
Indices: 5777194--5777219 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
5777184 AATGCTATAA
5777194 AATTAATTAGTAT
1 AATTAATTAGTAT
5777207 AATTAATTAGTAT
1 AATTAATTAGTAT
5777220 GAAAATAACG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (13 bp):
AATTAATTAGTAT
Found at i:5791380 original size:18 final size:18
Alignment explanation
Indices: 5791357--5791400 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
5791347 GAACAATACC
5791357 GAATGCTAAAAATTTTCA
1 GAATGCTAAAAATTTTCA
*
5791375 GAATGCTAAAATTTTTCA
1 GAATGCTAAAAATTTTCA
5791393 GAATGCTA
1 GAATGCTA
5791401 CAGGGGTATC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.34
Consensus pattern (18 bp):
GAATGCTAAAAATTTTCA
Found at i:5793649 original size:3 final size:3
Alignment explanation
Indices: 5793641--5793669 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
5793631 TTCACGTTGG
5793641 AGA AGA AGA A-A AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
5793670 GAGTTTTCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:5796322 original size:15 final size:15
Alignment explanation
Indices: 5796302--5796352 Score: 84
Period size: 15 Copynumber: 3.4 Consensus size: 15
5796292 TGAGACATTA
5796302 CCCGCCCCGCATCCG
1 CCCGCCCCGCATCCG
*
5796317 CCCGCCCCGCATCTG
1 CCCGCCCCGCATCCG
*
5796332 CCCGCCCCACATCCG
1 CCCGCCCCGCATCCG
5796347 CCCGCC
1 CCCGCC
5796353 TAACTAAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.08, C:0.67, G:0.18, T:0.08
Consensus pattern (15 bp):
CCCGCCCCGCATCCG
Found at i:5797274 original size:44 final size:44
Alignment explanation
Indices: 5797210--5797294 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
5797200 AAATCGAAGT
* * *
5797210 AACCAATAGCGTGACATCAGTAACGACGTCATACGAACAGAATA
1 AACCAATAACGTGACATCAGTAACGACGTCACACAAACAGAATA
* * **
5797254 AACCATTAACGTGACTTCAGTAGTGACGTCACACAAACAGA
1 AACCAATAACGTGACATCAGTAACGACGTCACACAAACAGA
5797295 GTATACGAAA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 34 1.00
ACGTcount: A:0.41, C:0.24, G:0.18, T:0.18
Consensus pattern (44 bp):
AACCAATAACGTGACATCAGTAACGACGTCACACAAACAGAATA
Found at i:5810731 original size:11 final size:13
Alignment explanation
Indices: 5810701--5810732 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
5810691 GCCGAAATCG
5810701 AATATATCTAGAA
1 AATATATCTAGAA
5810714 AATATATCTAGAA
1 AATATATCTAGAA
5810727 AATATA
1 AATATA
5810733 GATTTTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.31
Consensus pattern (13 bp):
AATATATCTAGAA
Found at i:5814212 original size:258 final size:254
Alignment explanation
Indices: 5813566--5814423 Score: 1071
Period size: 258 Copynumber: 3.4 Consensus size: 254
5813556 CTTATTCATA
* * *
5813566 TATTGAATAAAAATATTTTTTTATTATTTCGGGTTAGGTTGGGGTTT-TAATTTATATATTC-G-
1 TATTGAATAAAAATATTTTTTTATTATTTC--G---GG-TCGGGTTTCTACTTCATATATTCGGT
* * * *
5813628 --GGTCGGGTGAAACTTTATTTTGATCGAGTCGGGTCG-TTTTTTTAAGTGTGATATTCGGGTTG
60 CAGGTCAGGTGAAACTTTATTTTGGTCGGGTCGGGTCGATTTTTTTAAATGTGATATTC-----G
* * *
5813690 GGTCGAGTTCGGGTTTAGGGCG-AAAA-A--T-----ACCCGACCCG-AAAATATATAA-TTTAC
120 GGTCGGGTTCGAGTTTAGGGTGAAAAATACCTAACCGACCCGACCCGAAAAATATATAATTTTAC
5813744 CTTATATA-TT-TGAATAATTACAATAATACCCCTCTATATATAA-TTTTTTCAATTAAGTCACT
185 CTTATATATTTATGAATAATTACAATAATACCCCTCTATATATAATTTTTTTCAATTAAGTCACT
5813806 GTTTT
250 GTTTT
* * *
5813811 TATTAAATAAAAATATTTTTTTAATTATTTCAGGTCGGGTTTTTACTTCATATA-T---TCAGGT
1 TATTGAATAAAAATATTTTTTT-ATTATTTCGGGTCGGGTTTCTACTTCATATATTCGGTCAGGT
* *
5813872 CAGGTGAAACTTTATTTTGGTCGGGTCGGGTTGATTTTTTTAAGTGTGATATTCGGGTCGGGTTC
65 CAGGTGAAACTTTATTTTGGTCGGGTCGGGTCGATTTTTTTAAATGTGATATTCGGGTCGGGTTC
* *
5813937 GGGTTTAGGGTGAAAAATACCTGACCAGACCCGACCCGAAAATATATATAATTTTACCTTATATA
130 GAGTTTAGGGTGAAAAATACCTAACC-GACCCGACCCGAAAA-ATATATAATTTTACCTTATATA
*
5814002 TTTATGAATAATTATAATAATACCCCTCTATATATAATTTTTTTCAATTAAGTCACTGTTTT
193 TTTATGAATAATTACAATAATACCCCTCTATATATAATTTTTTTCAATTAAGTCACTGTTTT
5814064 TATTGAATAAAAATAATTTTTTTATTATTTCGGGTCGGGTTTCTACTTCATATATTCAGGTCAGG
1 TATTGAATAAAAAT-ATTTTTTTATTATTTCGGGTCGGGTTTCTACTTCATATATTC-GGTCAGG
**
5814129 TCAGGTGAAACTTTATTTTGGTCGGACCGGGTCGATTTTTTTAAATGTGATATTCGGGTCGGGTT
64 TCAGGTGAAACTTTATTTTGGTCGGGTCGGGTCGATTTTTTTAAATGTGATATTCGGGTCGGGTT
*
5814194 CGAGTTTAGGGTGAAAAATACCTAACCGACCCGACCCAAAAAATATATAATTTTACCTTATATAT
129 CGAGTTTAGGGTGAAAAATACCTAACCGACCCGACCCGAAAAATATATAATTTTACCTTATATAT
** *
5814259 TTAAAAATAATTACAATAATACCCCTCTATATATAACTTTTTTTCAATTAAGTCACTATTTT
194 TTATGAATAATTACAATAATACCCCTCTATATATAA-TTTTTTTCAATTAAGTCACTGTTTT
* *
5814321 TATTGAATAAAAATATTTTTTTATTATTTCGGATCGGGTCGGATTTCTAATTCATATATTCGGGT
1 TATTGAATAAAAATATTTTTTTATTA-TT----TCGGGTCGGGTTTCTACTTCATATATTC-GGT
* * * *
5814386 CGGGCCGGGTGAAACTTTATTTTTGTCGGGTCGGGTCG
60 CAGGTCAGGTGAAACTTTATTTTGGTCGGGTCGGGTCG
5814424 GGTAGACCAA
Statistics
Matches: 544, Mismatches: 35, Indels: 52
0.86 0.06 0.08
Matches are distributed among these distances:
237 21 0.04
238 4 0.01
239 1 0.00
240 8 0.01
241 44 0.08
242 20 0.04
245 21 0.04
246 8 0.01
247 10 0.02
248 3 0.01
249 8 0.01
250 13 0.02
251 2 0.00
252 32 0.06
253 66 0.12
254 9 0.02
256 68 0.12
257 54 0.10
258 91 0.17
261 61 0.11
ACGTcount: A:0.28, C:0.13, G:0.18, T:0.41
Consensus pattern (254 bp):
TATTGAATAAAAATATTTTTTTATTATTTCGGGTCGGGTTTCTACTTCATATATTCGGTCAGGTC
AGGTGAAACTTTATTTTGGTCGGGTCGGGTCGATTTTTTTAAATGTGATATTCGGGTCGGGTTCG
AGTTTAGGGTGAAAAATACCTAACCGACCCGACCCGAAAAATATATAATTTTACCTTATATATTT
ATGAATAATTACAATAATACCCCTCTATATATAATTTTTTTCAATTAAGTCACTGTTTT
Found at i:5815119 original size:35 final size:35
Alignment explanation
Indices: 5815073--5815143 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
5815063 ACATTTACTA
* *
5815073 ACAACTAAACATTTAATAATATTAAATTTTATCAT
1 ACAACTAAACATTTAATAATACTAAAATTTATCAT
5815108 ACAACTAAACATTTAATAATACTAAAATTTATCAT
1 ACAACTAAACATTTAATAATACTAAAATTTATCAT
5815143 A
1 A
5815144 TTTACGATGC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.51, C:0.13, G:0.00, T:0.37
Consensus pattern (35 bp):
ACAACTAAACATTTAATAATACTAAAATTTATCAT
Found at i:5815133 original size:17 final size:16
Alignment explanation
Indices: 5815076--5815138 Score: 56
Period size: 17 Copynumber: 3.7 Consensus size: 16
5815066 TTTACTAACA
5815076 ACTAAACATTTAATAAT
1 ACTAAA-ATTTAATAAT
* *
5815093 ATTAAATTTTATCATACA-
1 ACTAAAATTTA--ATA-AT
5815111 ACTAAACATTTAATAAT
1 ACTAAA-ATTTAATAAT
5815128 ACTAAAATTTA
1 ACTAAAATTTA
5815139 TCATATTTAC
Statistics
Matches: 37, Mismatches: 4, Indels: 11
0.71 0.08 0.21
Matches are distributed among these distances:
16 10 0.27
17 14 0.38
18 8 0.22
19 5 0.14
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (16 bp):
ACTAAAATTTAATAAT
Found at i:5822093 original size:24 final size:24
Alignment explanation
Indices: 5822066--5822179 Score: 158
Period size: 24 Copynumber: 4.8 Consensus size: 24
5822056 ATAATCAAAT
5822066 ACAAATGAACGAACATAAACGAAC
1 ACAAATGAACGAACATAAACGAAC
*
5822090 ACAAATGAACGAACGTAAACGAAC
1 ACAAATGAACGAACATAAACGAAC
* *
5822114 ACAAATGAACGAACGTAAACGAAT
1 ACAAATGAACGAACATAAACGAAC
* *
5822138 AC-AATAAACGAATATAAACGAAC
1 ACAAATGAACGAACATAAACGAAC
* *
5822161 ACAAACGAACCAACATAAA
1 ACAAATGAACGAACATAAA
5822180 TGCAAATATT
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
23 19 0.24
24 60 0.76
ACGTcount: A:0.58, C:0.20, G:0.12, T:0.10
Consensus pattern (24 bp):
ACAAATGAACGAACATAAACGAAC
Found at i:5823008 original size:31 final size:31
Alignment explanation
Indices: 5822963--5823027 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 31
5822953 AGGAGGAATG
*
5822963 GTCCCTAATATTATCAAGCCATTCAATTTTA
1 GTCCCTAACATTATCAAGCCATTCAATTTTA
* * * **
5822994 GTCCCTAACCTTATCGATCCATTCGCTTTTA
1 GTCCCTAACATTATCAAGCCATTCAATTTTA
5823025 GTC
1 GTC
5823028 ACTCACCATG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.28, G:0.09, T:0.38
Consensus pattern (31 bp):
GTCCCTAACATTATCAAGCCATTCAATTTTA
Found at i:5823306 original size:3 final size:3
Alignment explanation
Indices: 5823298--5823326 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
5823288 TAGAAGCAAT
5823298 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
5823327 TGTATTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:5839301 original size:23 final size:23
Alignment explanation
Indices: 5839271--5839326 Score: 103
Period size: 23 Copynumber: 2.4 Consensus size: 23
5839261 ATACATGGAT
5839271 TCTTCTTCCTCAACCCAACCCCG
1 TCTTCTTCCTCAACCCAACCCCG
5839294 TCTTCTTCCTCAACCCAACCCCG
1 TCTTCTTCCTCAACCCAACCCCG
*
5839317 TTTTCTTCCT
1 TCTTCTTCCT
5839327 TAACACCATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.14, C:0.48, G:0.04, T:0.34
Consensus pattern (23 bp):
TCTTCTTCCTCAACCCAACCCCG
Found at i:5840821 original size:74 final size:77
Alignment explanation
Indices: 5840639--5840846 Score: 280
Period size: 75 Copynumber: 2.8 Consensus size: 77
5840629 CAAAGCCAAA
* * * * **
5840639 AATTACAGATTGCTCAGAGGGAACCGATTCCCCCCATAGGAGGAACTGATTCCCCCCTAAATGGT
1 AATTCCAGAATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGT
5840704 TTTGGCCCCGAG
66 TTTGGCCCCGAG
*
5840716 ATTTCCAGAATGCTCGGAGGG-ACCGATT-CCCCCATAGGAGGAACCGATTCCCCCCTAAACAGT
1 AATTCCAGAATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGT
*
5840779 TTT-GCTCCGAG
66 TTTGGCCCCGAG
* * * *
5840790 AATTCCAGTATGCTCGGAGGGAACCGATCCCCCCCA-AGGGGGTACCGATTCCCCCCT
1 AATTCCAGAATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCT
5840847 TGTACAACGG
Statistics
Matches: 116, Mismatches: 13, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
74 26 0.22
75 60 0.52
76 13 0.11
77 17 0.15
ACGTcount: A:0.24, C:0.32, G:0.24, T:0.21
Consensus pattern (77 bp):
AATTCCAGAATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGT
TTTGGCCCCGAG
Found at i:5846358 original size:22 final size:23
Alignment explanation
Indices: 5846332--5846389 Score: 73
Period size: 22 Copynumber: 2.5 Consensus size: 23
5846322 GTGTTTATTT
*
5846332 ATTTATTGTTCACGAATATG-TC
1 ATTTATTGTTCACGAAGATGTTC
* *
5846354 ATTTAATATTCACGAAGATGTTC
1 ATTTATTGTTCACGAAGATGTTC
5846377 ATTTATATGTTCA
1 ATTTAT-TGTTCA
5846390 TAAACATGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
22 17 0.59
23 7 0.24
24 5 0.17
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.45
Consensus pattern (23 bp):
ATTTATTGTTCACGAAGATGTTC
Found at i:5847258 original size:21 final size:21
Alignment explanation
Indices: 5847229--5847268 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
5847219 GGTTATGGAG
* *
5847229 TTATGATTTATGATTTAAGAT
1 TTATAATTTAGGATTTAAGAT
*
5847250 TTATAATTTAGGGTTTAAG
1 TTATAATTTAGGATTTAAG
5847269 TATAGAATGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (21 bp):
TTATAATTTAGGATTTAAGAT
Found at i:5858959 original size:17 final size:17
Alignment explanation
Indices: 5858937--5858988 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 17
5858927 TGGGCCGGGT
5858937 ATATATATTTAAATTAA
1 ATATATATTTAAATTAA
*
5858954 ATATATA---AATATTAT
1 ATATATATTTAA-ATTAA
5858969 ATATATATTTAAATTTAA
1 ATATATATTTAAA-TTAA
5858987 AT
1 AT
5858989 TAAATTTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 9
0.72 0.05 0.23
Matches are distributed among these distances:
14 2 0.07
15 11 0.39
17 8 0.29
18 7 0.25
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
ATATATATTTAAATTAA
Found at i:5858999 original size:32 final size:33
Alignment explanation
Indices: 5858936--5859010 Score: 93
Period size: 32 Copynumber: 2.3 Consensus size: 33
5858926 TTGGGCCGGG
5858936 TATATATATTTAAATTAAATATATAAATATT-A
1 TATATATATTTAAATTAAATATATAAATATTAA
*
5858968 TATATATATTTAAATTTAAAT-TA-AATTTATTAA
1 TATATATATTTAAA-TTAAATATATAA-ATATTAA
5859001 TATTATATAT
1 TA-TATATAT
5859011 ATAATTATTA
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
31 2 0.05
32 20 0.53
33 9 0.24
34 7 0.18
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (33 bp):
TATATATATTTAAATTAAATATATAAATATTAA
Found at i:5859018 original size:21 final size:21
Alignment explanation
Indices: 5858961--5859027 Score: 63
Period size: 21 Copynumber: 3.4 Consensus size: 21
5858951 TAAATATATA
*
5858961 AATATTATATATAT-ATT-TA
1 AATATTATATATATAATTATT
*
5858980 AAT-TTAAAT-TA-AATTTATT
1 AATATTATATATATAA-TTATT
5858999 AATATTATATATATAATTATT
1 AATATTATATATATAATTATT
*
5859020 ATTATTAT
1 AATATTAT
5859028 TTTTAATATT
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
17 3 0.08
18 7 0.18
19 7 0.18
20 5 0.13
21 14 0.37
22 2 0.05
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
AATATTATATATATAATTATT
Found at i:5862995 original size:31 final size:31
Alignment explanation
Indices: 5862957--5863015 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
5862947 CGAGGGTTAT
*
5862957 CTATGTTCTACGGAACATATGGATAGTTTAC
1 CTATGTTCTACGGAACATATGGACAGTTTAC
*
5862988 CTATGTTCTTCGGAACATATGGACAGTT
1 CTATGTTCTACGGAACATATGGACAGTT
5863016 ACATAGGTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (31 bp):
CTATGTTCTACGGAACATATGGACAGTTTAC
Found at i:5866617 original size:18 final size:19
Alignment explanation
Indices: 5866591--5866629 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
5866581 CATAAATAAC
*
5866591 ATTATGAAAA-TACAAATA
1 ATTAAGAAAATTACAAATA
*
5866609 ATTAAGAAAATTACAATTA
1 ATTAAGAAAATTACAAATA
5866628 AT
1 AT
5866630 AATAATAATG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.31
Consensus pattern (19 bp):
ATTAAGAAAATTACAAATA
Found at i:5867235 original size:55 final size:58
Alignment explanation
Indices: 5867164--5867280 Score: 159
Period size: 55 Copynumber: 2.1 Consensus size: 58
5867154 AATAAAGATT
* * * *
5867164 TAATATTTAAACTATACTTTAAAATATGATTTGGCATCTAAATAA-T-TTTTT-TTAA
1 TAATATTTAAACTATACTTCAAAATATAATTTGACACCTAAATAATTATTTTTGTTAA
* *
5867219 TAATATTTAAATTATACTTCAAAATATAATTTGATACCTAAATAATTATTTTTGTTAA
1 TAATATTTAAACTATACTTCAAAATATAATTTGACACCTAAATAATTATTTTTGTTAA
5867277 TAAT
1 TAAT
5867281 CGATGTATAA
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
55 39 0.74
56 1 0.02
57 5 0.09
58 8 0.15
ACGTcount: A:0.42, C:0.07, G:0.04, T:0.47
Consensus pattern (58 bp):
TAATATTTAAACTATACTTCAAAATATAATTTGACACCTAAATAATTATTTTTGTTAA
Found at i:5878453 original size:135 final size:135
Alignment explanation
Indices: 5878224--5878479 Score: 386
Period size: 135 Copynumber: 1.9 Consensus size: 135
5878214 AGACGATAGA
* *
5878224 TCCATCTTCTAATAAACAAACTTTAGGTAAGCTTTCACAACTGAATTGCCAATCCGATATTCCGA
1 TCCATCTTCTAATAAACAAACTTTAGGTAAGCTTTCACAACTGAATTGCCAATCAGATATTCCAA
* * * *
5878289 GTTTGTTTCGTAACAGCCAGCGTGTTCTTAAATATGTTGCAGCACTTTGTGATGGCCGGAAGGCA
66 GTTTCTTTCGTAACAGCCAGCGTGTTCTTAAATATATTGCAGCACTTCGCGATGGCCGGAAGGCA
5878354 ATGGC
131 ATGGC
* * * * *
5878359 TCCATCTTCTGATAAACAAATTTTAGGTAAGCTTTCACAACTGAGTTGCCTATCAGATGTTCCAA
1 TCCATCTTCTAATAAACAAACTTTAGGTAAGCTTTCACAACTGAATTGCCAATCAGATATTCCAA
* * *
5878424 GTTTCTTTTGTAACAGCCAGCTTGTTCTTAAATCTATTGCAGCACTTCGCGATGGC
66 GTTTCTTTCGTAACAGCCAGCGTGTTCTTAAATATATTGCAGCACTTCGCGATGGC
5878480 AACTATCCCG
Statistics
Matches: 107, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
135 107 1.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (135 bp):
TCCATCTTCTAATAAACAAACTTTAGGTAAGCTTTCACAACTGAATTGCCAATCAGATATTCCAA
GTTTCTTTCGTAACAGCCAGCGTGTTCTTAAATATATTGCAGCACTTCGCGATGGCCGGAAGGCA
ATGGC
Found at i:5889891 original size:59 final size:60
Alignment explanation
Indices: 5889811--5889984 Score: 235
Period size: 59 Copynumber: 2.9 Consensus size: 60
5889801 ATACCCGAGT
* * *
5889811 GACCGTTTTGTAACTTTTAATAGTCGAGAGATTCAATAAAGCAACACACTATAGTCGAAG
1 GACCATTTTATAACTTTTAATAGTCGAGGGATTCAATAAAGCAACACACTATAGTCGAAG
* * * *
5889871 GACCATTTTATAAC-TTTAATAGTCGAGGGACTCAATAAAGCAACTCTCTATAGTCGAAT
1 GACCATTTTATAACTTTTAATAGTCGAGGGATTCAATAAAGCAACACACTATAGTCGAAG
* * *
5889930 GACCATTTTATAACTTTTAATAGTCGAGGGACTT-AATAAAGTAATACCCTATAGT
1 GACCATTTTATAACTTTTAATAGTCGAGGGA-TTCAATAAAGCAACACACTATAGT
5889985 TGGGGACCAT
Statistics
Matches: 100, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
59 54 0.54
60 45 0.45
61 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (60 bp):
GACCATTTTATAACTTTTAATAGTCGAGGGATTCAATAAAGCAACACACTATAGTCGAAG
Found at i:5889924 original size:31 final size:31
Alignment explanation
Indices: 5889830--5889927 Score: 78
Period size: 31 Copynumber: 3.3 Consensus size: 31
5889820 GTAACTTTTA
* * * *
5889830 ATAGTCGAGAGATTCAATAAAGCAACACACT
1 ATAGTCGAGGGACTCAATAAAGCAACTCTCT
* * ** *
5889861 ATAGTCGAAGGAC-CATTTTA-TAACT-T-T
1 ATAGTCGAGGGACTCAATAAAGCAACTCTCT
5889888 AATAGTCGAGGGACTCAATAAAGCAACTCTCT
1 -ATAGTCGAGGGACTCAATAAAGCAACTCTCT
5889920 ATAGTCGA
1 ATAGTCGA
5889928 ATGACCATTT
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
27 1 0.02
28 12 0.25
29 7 0.15
30 8 0.17
31 19 0.40
32 1 0.02
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.26
Consensus pattern (31 bp):
ATAGTCGAGGGACTCAATAAAGCAACTCTCT
Found at i:5889952 original size:29 final size:29
Alignment explanation
Indices: 5889861--5889961 Score: 89
Period size: 29 Copynumber: 3.4 Consensus size: 29
5889851 GCAACACACT
5889861 ATAGTCGAAGGACCATTTTATAAC-TTTA
1 ATAGTCGAAGGACCATTTTATAACTTTTA
* * ** * *
5889889 ATAGTCGAGGGACTCAATAAAGCAACTCTCT-
1 ATAGTCGAAGGAC-CATTTTA-TAACT-TTTA
*
5889920 ATAGTCGAATGACCATTTTATAACTTTTA
1 ATAGTCGAAGGACCATTTTATAACTTTTA
*
5889949 ATAGTCGAGGGAC
1 ATAGTCGAAGGAC
5889962 TTAATAAAGT
Statistics
Matches: 53, Mismatches: 15, Indels: 9
0.69 0.19 0.12
Matches are distributed among these distances:
28 14 0.26
29 19 0.36
30 7 0.13
31 11 0.21
32 2 0.04
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.31
Consensus pattern (29 bp):
ATAGTCGAAGGACCATTTTATAACTTTTA
Found at i:5890119 original size:17 final size:17
Alignment explanation
Indices: 5890094--5890127 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
5890084 CTTAAAAATA
5890094 ACAAATTATTTAAATTT
1 ACAAATTATTTAAATTT
* *
5890111 ACAATTTATTTTAATTT
1 ACAAATTATTTAAATTT
5890128 TAAATAATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (17 bp):
ACAAATTATTTAAATTT
Found at i:5895692 original size:21 final size:21
Alignment explanation
Indices: 5895662--5895711 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
5895652 CCACTATAAC
*
5895662 GATGACGACGACGA-AGAAGAA
1 GATGAAGACGACGACA-AAGAA
5895683 GATGAAGACGACGACAAAGAA
1 GATGAAGACGACGACAAAGAA
*
5895704 GAAGAAGA
1 GATGAAGA
5895712 ATACAGATTC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 25 0.96
22 1 0.04
ACGTcount: A:0.52, C:0.12, G:0.32, T:0.04
Consensus pattern (21 bp):
GATGAAGACGACGACAAAGAA
Found at i:5897050 original size:28 final size:27
Alignment explanation
Indices: 5897019--5897071 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
5897009 AATTATATAT
5897019 TTTTAAAAAAAATAAAAATTTGAAAAAC
1 TTTT-AAAAAAATAAAAATTTGAAAAAC
* *
5897047 TTTTTAAAAAATAAAACTTTGAAAA
1 TTTTAAAAAAATAAAAATTTGAAAA
5897072 CTCTAATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 19 0.83
28 4 0.17
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.32
Consensus pattern (27 bp):
TTTTAAAAAAATAAAAATTTGAAAAAC
Found at i:5897451 original size:17 final size:18
Alignment explanation
Indices: 5897407--5897457 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
5897397 TTTTTTTTGT
5897407 AATTTTATAAAAAATAGAG
1 AATTTT-TAAAAAATAGAG
* *
5897426 AATTTTTAATAAATATAG
1 AATTTTTAAAAAATAGAG
5897444 AA-TTTTAAAAAATA
1 AATTTTTAAAAAATA
5897458 AAAATAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
17 11 0.38
18 12 0.41
19 6 0.21
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (18 bp):
AATTTTTAAAAAATAGAG
Found at i:5898212 original size:28 final size:29
Alignment explanation
Indices: 5898181--5898243 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
5898171 TATTGTCATA
*
5898181 AAATTTT-AAAAATTATAAAACAATAATT
1 AAATTTTCAAAAATTACAAAACAATAATT
* * *
5898209 AAATTTTCAAAAGTTACAAAATAATTATT
1 AAATTTTCAAAAATTACAAAACAATAATT
*
5898238 GAATTT
1 AAATTT
5898244 AGTATCATAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 7 0.24
29 22 0.76
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.38
Consensus pattern (29 bp):
AAATTTTCAAAAATTACAAAACAATAATT
Found at i:5901762 original size:23 final size:22
Alignment explanation
Indices: 5901724--5901766 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
5901714 CAATTCCTTT
5901724 ATCTTTTCTTTATCTTGTTTTA
1 ATCTTTTCTTTATCTTGTTTTA
*
5901746 ATCTTATTTTTTATCTTGTTT
1 ATCTT-TTCTTTATCTTGTTT
5901767 CCAGCACCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.14, C:0.12, G:0.05, T:0.70
Consensus pattern (22 bp):
ATCTTTTCTTTATCTTGTTTTA
Found at i:5902134 original size:21 final size:22
Alignment explanation
Indices: 5902094--5902141 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
5902084 CTATTTTTTT
* *
5902094 CAAAAAAAAAATCAAAAAAAGG
1 CAAAAAAAAAAACAAAAAAAGC
*
5902116 CAAAAAAAAAAAC-ATAAAAGC
1 CAAAAAAAAAAACAAAAAAAGC
5902137 CAAAA
1 CAAAA
5902142 TTTCAAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.77, C:0.12, G:0.06, T:0.04
Consensus pattern (22 bp):
CAAAAAAAAAAACAAAAAAAGC
Found at i:5906032 original size:15 final size:17
Alignment explanation
Indices: 5906009--5906042 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
5905999 TTAAGATATG
5906009 TTTAGTTTATTA-TTAT
1 TTTAGTTTATTAGTTAT
5906025 TTTA-TTTATTAGTTAT
1 TTTAGTTTATTAGTTAT
5906041 TT
1 TT
5906043 AGGACATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.71
Consensus pattern (17 bp):
TTTAGTTTATTAGTTAT
Found at i:5907102 original size:43 final size:43
Alignment explanation
Indices: 5907041--5907148 Score: 189
Period size: 43 Copynumber: 2.5 Consensus size: 43
5907031 AAGTTAAGAG
*
5907041 AGTGTCGGATACGGGTATATCTGTGTTACTCGAATTGAGTGTC
1 AGTGTTGGATACGGGTATATCTGTGTTACTCGAATTGAGTGTC
5907084 AGTGTTGGATACGGGTATATCTGTGTTACTCGAATTGAGTGTC
1 AGTGTTGGATACGGGTATATCTGTGTTACTCGAATTGAGTGTC
* *
5907127 AGTGCTGGATATGGGTATATCT
1 AGTGTTGGATACGGGTATATCT
5907149 CCAACACGAA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 62 1.00
ACGTcount: A:0.21, C:0.12, G:0.31, T:0.36
Consensus pattern (43 bp):
AGTGTTGGATACGGGTATATCTGTGTTACTCGAATTGAGTGTC
Found at i:5914606 original size:103 final size:105
Alignment explanation
Indices: 5914375--5914599 Score: 337
Period size: 103 Copynumber: 2.1 Consensus size: 105
5914365 GTCGAGGGTC
* *
5914375 TATGTGGTCATTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGACTGGTGAGA
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAA----GGT-ACTGGTGAGA
* * *
5914440 CACATACTTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
61 CACATACTTGATCCCTAGCATATGTATATGATTCTTAAGAAATGA
5914485 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAA-GT-CTGGTGAGACACAT
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGGTACTGGTGAGACACAT
*
5914548 ACTTGATCCCTAGTATATGTATATGATTCTTAAGAAATGA
66 ACTTGATCCCTAGCATATGTATATGATTCTTAAGAAATGA
5914588 TATGTGGTCCTT
1 TATGTGGTCCTT
5914600 ATGGACAGTA
Statistics
Matches: 109, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
103 62 0.57
105 2 0.02
110 45 0.41
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.37
Consensus pattern (105 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGGTACTGGTGAGACACAT
ACTTGATCCCTAGCATATGTATATGATTCTTAAGAAATGA
Found at i:5914682 original size:23 final size:23
Alignment explanation
Indices: 5914615--5914683 Score: 84
Period size: 23 Copynumber: 3.0 Consensus size: 23
5914605 CAGTATTATA
* * *
5914615 TGGCACTACGCTGCAATTCTACG
1 TGGCACTACGGTGCAATTATATG
* *
5914638 CGGCACTCCGGTGCAATTATATG
1 TGGCACTACGGTGCAATTATATG
*
5914661 TGGCACTTCGGTGCAATTATATG
1 TGGCACTACGGTGCAATTATATG
5914684 AGCTGTGGTG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.22, C:0.25, G:0.25, T:0.29
Consensus pattern (23 bp):
TGGCACTACGGTGCAATTATATG
Found at i:5920486 original size:103 final size:103
Alignment explanation
Indices: 5920306--5920519 Score: 349
Period size: 103 Copynumber: 2.1 Consensus size: 103
5920296 AGGGTCTATA
5920306 TGGTCCTTCGGGACATATATGTATTCTTTAGAACATGTGTGAAGTCTGGTGAGACACATACTTGA
1 TGGTCCTTCGGGACATATATGTATTCTTTAGAACATGTGTGAAGTCTGGTGAGACACATACTTGA
* *
5920371 TCCTTGGCATATGTATATGATTCTTA-AGGAATGATATG
66 TCCCTAGCATATGTATATGATTCTTAGA-GAATGATATG
* * *
5920409 TGGTCTTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTTTGGTGAGACACATACTTGA
1 TGGTCCTTCGGGACATATATGTATTCTTTAGAACATGTGTGAAGTCTGGTGAGACACATACTTGA
*
5920474 TCCCTAGTATATGTATATGATTCTTAGAGAATGATATG
66 TCCCTAGCATATGTATATGATTCTTAGAGAATGATATG
*
5920512 TGGCCCTT
1 TGGTCCTT
5920520 ATGGACAGTA
Statistics
Matches: 102, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
103 101 0.99
104 1 0.01
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.37
Consensus pattern (103 bp):
TGGTCCTTCGGGACATATATGTATTCTTTAGAACATGTGTGAAGTCTGGTGAGACACATACTTGA
TCCCTAGCATATGTATATGATTCTTAGAGAATGATATG
Found at i:5920574 original size:23 final size:23
Alignment explanation
Indices: 5920548--5920601 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
5920538 CACTACGCTT
*
5920548 CAATTCTACGCGGCACTCCGGTG
1 CAATTATACGCGGCACTCCGGTG
* * *
5920571 CAATTATATGTGGCACTTCGGTG
1 CAATTATACGCGGCACTCCGGTG
5920594 CAATTATA
1 CAATTATA
5920602 TGAGCTGTGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (23 bp):
CAATTATACGCGGCACTCCGGTG
Found at i:5920602 original size:23 final size:23
Alignment explanation
Indices: 5920559--5920603 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
5920549 AATTCTACGC
5920559 GGCACTCCGGTGCAATTATATGT
1 GGCACTCCGGTGCAATTATATGT
*
5920582 GGCACTTCGGTGCAATTATATG
1 GGCACTCCGGTGCAATTATATG
5920604 AGCTGTGGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (23 bp):
GGCACTCCGGTGCAATTATATGT
Found at i:5923185 original size:22 final size:22
Alignment explanation
Indices: 5923160--5923209 Score: 100
Period size: 22 Copynumber: 2.3 Consensus size: 22
5923150 AGCAGCCGGC
5923160 GGCTGCAAAAACAAGTGGGGAG
1 GGCTGCAAAAACAAGTGGGGAG
5923182 GGCTGCAAAAACAAGTGGGGAG
1 GGCTGCAAAAACAAGTGGGGAG
5923204 GGCTGC
1 GGCTGC
5923210 TAAATTTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.32, C:0.16, G:0.42, T:0.10
Consensus pattern (22 bp):
GGCTGCAAAAACAAGTGGGGAG
Found at i:5924714 original size:2 final size:2
Alignment explanation
Indices: 5924707--5924737 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
5924697 AAAACAAAGG
5924707 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
5924738 GTACTGGTAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:5930812 original size:2 final size:2
Alignment explanation
Indices: 5930807--5930844 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
5930797 TCATATATGC
5930807 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5930845 TGCCCTATAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:5936990 original size:17 final size:16
Alignment explanation
Indices: 5936966--5937013 Score: 55
Period size: 16 Copynumber: 3.0 Consensus size: 16
5936956 ACATGACTGA
5936966 GGGACTAAAATCGAAC
1 GGGACTAAAATCGAAC
5936982 GGGAGCTAAAAGTCG-A-
1 GGGA-CTAAAA-TCGAAC
*
5936998 GGGACTAAAATTGAAC
1 GGGACTAAAATCGAAC
5937014 ATACCGATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
14 2 0.07
15 7 0.26
16 8 0.30
17 7 0.26
18 3 0.11
ACGTcount: A:0.42, C:0.15, G:0.29, T:0.15
Consensus pattern (16 bp):
GGGACTAAAATCGAAC
Found at i:5938478 original size:12 final size:11
Alignment explanation
Indices: 5938461--5938532 Score: 54
Period size: 12 Copynumber: 6.1 Consensus size: 11
5938451 TACCCCCAAT
5938461 TCAGAACAGATA
1 TCAGAACAGA-A
5938473 TCAGAACAGAA
1 TCAGAACAGAA
* *
5938484 TCCAGATCATAAA
1 T-CAGAACA-GAA
5938497 TCAGAACAGAA
1 TCAGAACAGAA
** *
5938508 TTCAGGTCATATA
1 -TCAGAACAGA-A
5938521 TCAGAACAGAA
1 TCAGAACAGAA
5938532 T
1 T
5938533 TCAAGTCGGA
Statistics
Matches: 46, Mismatches: 10, Indels: 9
0.71 0.15 0.14
Matches are distributed among these distances:
11 6 0.13
12 36 0.78
13 4 0.09
ACGTcount: A:0.47, C:0.18, G:0.15, T:0.19
Consensus pattern (11 bp):
TCAGAACAGAA
Found at i:5938533 original size:24 final size:24
Alignment explanation
Indices: 5938458--5938535 Score: 111
Period size: 24 Copynumber: 3.2 Consensus size: 24
5938448 CAATACCCCC
* *
5938458 AATTCAGAACAGATATCAGAACAG
1 AATTCAGATCATATATCAGAACAG
* *
5938482 AATCCAGATCATAAATCAGAACAG
1 AATTCAGATCATATATCAGAACAG
*
5938506 AATTCAGGTCATATATCAGAACAG
1 AATTCAGATCATATATCAGAACAG
5938530 AATTCA
1 AATTCA
5938536 AGTCGGAAAT
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.47, C:0.18, G:0.14, T:0.21
Consensus pattern (24 bp):
AATTCAGATCATATATCAGAACAG
Found at i:5938547 original size:24 final size:24
Alignment explanation
Indices: 5938472--5938549 Score: 95
Period size: 24 Copynumber: 3.2 Consensus size: 24
5938462 CAGAACAGAT
*
5938472 ATCAGAACAGAA-TCCAGATCATAA
1 ATCAGAACAGAATTCAAG-TCATAA
* *
5938496 ATCAGAACAGAATTCAGGTCATAT
1 ATCAGAACAGAATTCAAGTCATAA
**
5938520 ATCAGAACAGAATTCAAGTCGGAA
1 ATCAGAACAGAATTCAAGTCATAA
5938544 ATCAGA
1 ATCAGA
5938550 TAAAATATTT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
24 43 0.93
25 3 0.07
ACGTcount: A:0.46, C:0.18, G:0.17, T:0.19
Consensus pattern (24 bp):
ATCAGAACAGAATTCAAGTCATAA
Found at i:5943152 original size:12 final size:12
Alignment explanation
Indices: 5943127--5943183 Score: 60
Period size: 12 Copynumber: 4.8 Consensus size: 12
5943117 ACGGAGATAT
* *
5943127 CAGAAATCAAAA
1 CAGAATTCAGAA
*
5943139 CAGATTTCAGAA
1 CAGAATTCAGAA
* *
5943151 CAGAATCCAGAT
1 CAGAATTCAGAA
*
5943163 CAGAAATCAGAA
1 CAGAATTCAGAA
5943175 CAGAATTCA
1 CAGAATTCA
5943184 AGTCATATAT
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 35 1.00
ACGTcount: A:0.51, C:0.19, G:0.14, T:0.16
Consensus pattern (12 bp):
CAGAATTCAGAA
Found at i:5943154 original size:24 final size:24
Alignment explanation
Indices: 5943127--5943208 Score: 76
Period size: 24 Copynumber: 3.4 Consensus size: 24
5943117 ACGGAGATAT
* *
5943127 CAGAAATCAAAACAGATTTCAGAA
1 CAGAAATCAAATCAGATATCAGAA
* *
5943151 CAG-AATCCAGATCAGAAATCAGAA
1 CAGAAAT-CAAATCAGATATCAGAA
* * *
5943175 CAGAATTCAAGTCATATATCAGAA
1 CAGAAATCAAATCAGATATCAGAA
*
5943199 CAGAATTCAA
1 CAGAAATCAA
5943209 GTTTGAAATC
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
23 3 0.06
24 42 0.89
25 2 0.04
ACGTcount: A:0.50, C:0.18, G:0.13, T:0.18
Consensus pattern (24 bp):
CAGAAATCAAATCAGATATCAGAA
Found at i:5943209 original size:24 final size:24
Alignment explanation
Indices: 5943145--5943221 Score: 93
Period size: 24 Copynumber: 3.2 Consensus size: 24
5943135 AAAACAGATT
*
5943145 TCAGAACAGAA-TCCAGATCAGAAA
1 TCAGAACAGAATTCAAG-TCAGAAA
* *
5943169 TCAGAACAGAATTCAAGTCATATA
1 TCAGAACAGAATTCAAGTCAGAAA
**
5943193 TCAGAACAGAATTCAAGTTTGAAA
1 TCAGAACAGAATTCAAGTCAGAAA
5943217 TCAGA
1 TCAGA
5943222 TAAAATATTT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
24 41 0.91
25 4 0.09
ACGTcount: A:0.47, C:0.17, G:0.16, T:0.21
Consensus pattern (24 bp):
TCAGAACAGAATTCAAGTCAGAAA
Found at i:5947596 original size:37 final size:36
Alignment explanation
Indices: 5947525--5947596 Score: 92
Period size: 36 Copynumber: 2.0 Consensus size: 36
5947515 ATATTTTTTT
*
5947525 ATTTTGTAAAAAAATTATATAAATATTATGAATTTA
1 ATTTTGTAAAAAAATTATATAAATATTATCAATTTA
* *
5947561 ATTTTTTAAAGAAAA-TATATAAATATTTTACAATTT
1 ATTTTGTAAA-AAAATTATATAAATATTAT-CAATTT
5947597 GTAATATTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
36 22 0.71
37 9 0.29
ACGTcount: A:0.49, C:0.01, G:0.04, T:0.46
Consensus pattern (36 bp):
ATTTTGTAAAAAAATTATATAAATATTATCAATTTA
Found at i:5947767 original size:20 final size:20
Alignment explanation
Indices: 5947738--5947792 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
5947728 AGTAATCTTA
5947738 TTCC-CTGGTAATCTTCTAT
1 TTCCACTGGTAATCTTCTAT
5947757 TTCCACTGGTAATCTTCTAT
1 TTCCACTGGTAATCTTCTAT
5947777 TTCCACTGGTAATCTT
1 TTCCACTGGTAATCTT
5947793 ACATTCCGTG
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 4 0.11
20 31 0.89
ACGTcount: A:0.18, C:0.25, G:0.11, T:0.45
Consensus pattern (20 bp):
TTCCACTGGTAATCTTCTAT
Found at i:5948154 original size:16 final size:16
Alignment explanation
Indices: 5948133--5948166 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
5948123 TTACTATTCA
*
5948133 CGTGAATAGTGAATTT
1 CGTGAATAGTGAAATT
5948149 CGTGAATAGTGAAATT
1 CGTGAATAGTGAAATT
5948165 CG
1 CG
5948167 GTCGGCGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.09, G:0.26, T:0.32
Consensus pattern (16 bp):
CGTGAATAGTGAAATT
Found at i:5948935 original size:15 final size:16
Alignment explanation
Indices: 5948915--5948946 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
5948905 TGGCAGATCC
5948915 AAATCCAG-ACGGGAA
1 AAATCCAGAACGGGAA
5948930 AAATCCAGAACGGGAA
1 AAATCCAGAACGGGAA
5948946 A
1 A
5948947 GAAAGATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.50, C:0.19, G:0.25, T:0.06
Consensus pattern (16 bp):
AAATCCAGAACGGGAA
Found at i:5954501 original size:192 final size:196
Alignment explanation
Indices: 5954155--5954544 Score: 743
Period size: 192 Copynumber: 2.0 Consensus size: 196
5954145 AATTGATGCT
5954155 GGAAATGAGAAGACTGGGTTATGTTCCAGACACAAAGTTTGTGCTACAAGATATAGAGTCGGACC
1 GGAAATGAGAAGAC-GGGTTATGTTCCAGACACAAAGTTTGTGCTACAAGATATAGAGTCGGACC
5954220 AGAAAGAACGTGTCCTGTCGGCACACAGCGAGAAGCTCGCGTAGCTTTCGCGCTCATGAGGCTTC
65 AGAAAGAACGTGTCCTGTCGGCACACAGCGAGAAGCTCGCGTAGCTTTCGCGCTCATGAGGCTTC
5954285 CTCGTTGAGCCACCGTGAGGGTATTCGAGAACCTTGGGATTTGTGGGGATTTCCATAATGCATTC
130 CTCGTTGAGCCACCGTGAGGGTATTCGAGAACCTTGGGATTTGTGGGGATTTCCATAATGCATTC
5954350 AA
195 AA
5954352 GGAAATGAGAAGAC-GGTTATGTTCCAGACACAAAG-TTGTGCTACAAGATATAGAGTCGGACCA
1 GGAAATGAGAAGACGGGTTATGTTCCAGACACAAAGTTTGTGCTACAAGATATAGAGTCGGACCA
5954415 GAAAG-ACGTGTCCTGTC-GCACACAGCGAGAAGCTCGCGTAGCTTTCGCGCTCATGAGGCTTCC
66 GAAAGAACGTGTCCTGTCGGCACACAGCGAGAAGCTCGCGTAGCTTTCGCGCTCATGAGGCTTCC
5954478 TCGTTGAGCCACCGTGAGGGTATTCGAGAACCTTGGGATTTGTGGGGATTTCCATAATGCATTCA
131 TCGTTGAGCCACCGTGAGGGTATTCGAGAACCTTGGGATTTGTGGGGATTTCCATAATGCATTCA
5954543 A
196 A
5954544 G
1 G
5954545 TTTATGTCAA
Statistics
Matches: 193, Mismatches: 0, Indels: 5
0.97 0.00 0.03
Matches are distributed among these distances:
192 113 0.59
193 12 0.06
194 33 0.17
195 21 0.11
197 14 0.07
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (196 bp):
GGAAATGAGAAGACGGGTTATGTTCCAGACACAAAGTTTGTGCTACAAGATATAGAGTCGGACCA
GAAAGAACGTGTCCTGTCGGCACACAGCGAGAAGCTCGCGTAGCTTTCGCGCTCATGAGGCTTCC
TCGTTGAGCCACCGTGAGGGTATTCGAGAACCTTGGGATTTGTGGGGATTTCCATAATGCATTCA
A
Found at i:5954937 original size:27 final size:28
Alignment explanation
Indices: 5954894--5954951 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 28
5954884 ATTAAATTTC
5954894 ATTAAAAAATGATAAAATAA-TCATTAA
1 ATTAAAAAATGATAAAATAATTCATTAA
*
5954921 ATTAACAAATG-TAAAAATAATTCATTAA
1 ATTAAAAAATGAT-AAAATAATTCATTAA
5954949 ATT
1 ATT
5954952 TAATGATCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 1 0.04
27 17 0.61
28 10 0.36
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.33
Consensus pattern (28 bp):
ATTAAAAAATGATAAAATAATTCATTAA
Found at i:5958820 original size:17 final size:17
Alignment explanation
Indices: 5958798--5958830 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
5958788 AATTTTACTC
5958798 TCTCCTATTTTGGTCAT
1 TCTCCTATTTTGGTCAT
5958815 TCTCCTATTTTGGTCA
1 TCTCCTATTTTGGTCA
5958831 CTCTATCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.24, G:0.12, T:0.52
Consensus pattern (17 bp):
TCTCCTATTTTGGTCAT
Found at i:5959700 original size:14 final size:14
Alignment explanation
Indices: 5959681--5959710 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
5959671 AAATTGGATT
*
5959681 AAAAAATAATTGAA
1 AAAAAATAACTGAA
5959695 AAAAAATAACTGAA
1 AAAAAATAACTGAA
5959709 AA
1 AA
5959711 GATTTAAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.73, C:0.03, G:0.07, T:0.17
Consensus pattern (14 bp):
AAAAAATAACTGAA
Found at i:5959737 original size:3 final size:3
Alignment explanation
Indices: 5959729--5959758 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
5959719 AGATTTAAGG
5959729 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
5959759 CGATCTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:5962049 original size:42 final size:42
Alignment explanation
Indices: 5961972--5962056 Score: 109
Period size: 42 Copynumber: 2.0 Consensus size: 42
5961962 AAAATAGGCA
* * * *
5961972 TTTAATTGTTAAAATATAATATATTATAATAAAATATATTAT
1 TTTAATAGTTAAAATACAATAAATAATAATAAAATATATTAT
*
5962014 TTTAATAGTTTAAAATACAATAAATAATTAT-AAATATATTAT
1 TTTAATAG-TTAAAATACAATAAATAATAATAAAATATATTAT
5962056 T
1 T
5962057 ATAAAATATA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
42 19 0.51
43 18 0.49
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.46
Consensus pattern (42 bp):
TTTAATAGTTAAAATACAATAAATAATAATAAAATATATTAT
Found at i:5962071 original size:15 final size:15
Alignment explanation
Indices: 5961989--5962071 Score: 66
Period size: 15 Copynumber: 5.7 Consensus size: 15
5961979 GTTAAAATAT
*
5961989 AATATATTATAATAA
1 AATATATTATTATAA
*
5962004 AATATATTATT-T-T
1 AATATATTATTATAA
** *
5962017 AATAGT-TTAAAATAC
1 AATA-TATTATTATAA
* *
5962032 AATAAATAATTAT-A
1 AATATATTATTATAA
5962046 AATATATTATTATAA
1 AATATATTATTATAA
5962061 AATATATTATT
1 AATATATTATT
5962072 TTAATTATTT
Statistics
Matches: 51, Mismatches: 12, Indels: 10
0.70 0.16 0.14
Matches are distributed among these distances:
13 7 0.14
14 14 0.27
15 30 0.59
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (15 bp):
AATATATTATTATAA
Found at i:5964563 original size:14 final size:14
Alignment explanation
Indices: 5964544--5964570 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
5964534 ATGTCAACTC
5964544 GTTGCCGAGTTGGG
1 GTTGCCGAGTTGGG
5964558 GTTGCCGAGTTGG
1 GTTGCCGAGTTGG
5964571 ACGTGCTCTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.15, G:0.48, T:0.30
Consensus pattern (14 bp):
GTTGCCGAGTTGGG
Found at i:5965053 original size:16 final size:16
Alignment explanation
Indices: 5965032--5965072 Score: 82
Period size: 16 Copynumber: 2.6 Consensus size: 16
5965022 TTTTATATCA
5965032 CAAGTCATATTCAAAG
1 CAAGTCATATTCAAAG
5965048 CAAGTCATATTCAAAG
1 CAAGTCATATTCAAAG
5965064 CAAGTCATA
1 CAAGTCATA
5965073 ACATATATAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.44, C:0.20, G:0.12, T:0.24
Consensus pattern (16 bp):
CAAGTCATATTCAAAG
Found at i:5969721 original size:30 final size:29
Alignment explanation
Indices: 5969687--5969763 Score: 84
Period size: 30 Copynumber: 2.6 Consensus size: 29
5969677 GATTTGACAG
5969687 ATATATTATCATTTTA-TGACATGATACATA
1 ATATATTATCATTTTAGTGACATGAT--ATA
* *
5969717 ATATATTATTATTTTAAGTGATATGATATA
1 ATATATTATCATTTT-AGTGACATGATATA
* *
5969747 ATATATCATCACTTTAG
1 ATATATTATCATTTTAG
5969764 ATGATATAAC
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
29 2 0.05
30 29 0.73
31 1 0.03
32 8 0.20
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.45
Consensus pattern (29 bp):
ATATATTATCATTTTAGTGACATGATATA
Found at i:5976778 original size:39 final size:41
Alignment explanation
Indices: 5976734--5976812 Score: 126
Period size: 42 Copynumber: 2.0 Consensus size: 41
5976724 AATTACCAGT
5976734 TATGCA-G-GTTGATCCCCTAGCTTCTTGTTCCTTACTAGC
1 TATGCAGGAGTTGATCCCCTAGCTTCTTGTTCCTTACTAGC
*
5976773 TATGCAGGAAGTTGATCCTCTAGCTTCTTGTTCCTTACTA
1 TATGCAGG-AGTTGATCCCCTAGCTTCTTGTTCCTTACTA
5976813 CTTCCCTCTC
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
39 6 0.17
40 1 0.03
42 29 0.81
ACGTcount: A:0.18, C:0.25, G:0.18, T:0.39
Consensus pattern (41 bp):
TATGCAGGAGTTGATCCCCTAGCTTCTTGTTCCTTACTAGC
Found at i:5980201 original size:2 final size:2
Alignment explanation
Indices: 5980196--5980228 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
5980186 AGAGAGGAAC
*
5980196 AG AG AG AG AG AG AG AG AG AG AG GG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
5980229 TACTTACTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
AG
Found at i:5980201 original size:12 final size:12
Alignment explanation
Indices: 5980186--5980228 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
5980176 AGGCTAGATT
*
5980186 AGAGAGGAACAG
1 AGAGAGGAAGAG
5980198 AGAGAGAGAGAGAG
1 AGAGAG-GA-AGAG
*
5980212 AGAGAGGGAGAG
1 AGAGAGGAAGAG
5980224 AGAGA
1 AGAGA
5980229 TACTTACTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 15 0.56
13 3 0.11
14 9 0.33
ACGTcount: A:0.49, C:0.02, G:0.49, T:0.00
Consensus pattern (12 bp):
AGAGAGGAAGAG
Found at i:5986010 original size:19 final size:19
Alignment explanation
Indices: 5985986--5986022 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
5985976 TGTCTTAAGA
5985986 TTATATAATATATTAATTT
1 TTATATAATATATTAATTT
*
5986005 TTATATTATATATTAATT
1 TTATATAATATATTAATT
5986023 ATATGATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
TTATATAATATATTAATTT
Found at i:5986080 original size:14 final size:14
Alignment explanation
Indices: 5986053--5986086 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
5986043 TTATGTGATA
5986053 ATTAAATATATAAT
1 ATTAAATATATAAT
5986067 ATTATAATAT-TAAT
1 ATTA-AATATATAAT
5986081 ATTAAA
1 ATTAAA
5986087 AAATATTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 2 0.11
14 12 0.63
15 5 0.26
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
ATTAAATATATAAT
Found at i:5986105 original size:23 final size:24
Alignment explanation
Indices: 5986064--5986109 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
5986054 TTAAATATAT
5986064 AATATTATAATATTAATATTAAAA
1 AATATTATAATATTAATATTAAAA
* *
5986088 AATATT-TATTATTTATATTAAA
1 AATATTATAATATTAATATTAAA
5986110 TTTTTTAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (24 bp):
AATATTATAATATTAATATTAAAA
Found at i:5992076 original size:12 final size:12
Alignment explanation
Indices: 5992056--5992098 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
5992046 GCCAATAATG
*
5992056 CAAAAGACAACA
1 CAAATGACAACA
5992068 CAAATGACAA-A
1 CAAATGACAACA
5992079 -AAA-GACAACA
1 CAAATGACAACA
5992089 CAAATGACAA
1 CAAATGACAA
5992099 AACATGCCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
9 5 0.19
10 4 0.15
11 4 0.15
12 14 0.52
ACGTcount: A:0.65, C:0.21, G:0.09, T:0.05
Consensus pattern (12 bp):
CAAATGACAACA
Found at i:5992082 original size:21 final size:21
Alignment explanation
Indices: 5992057--5992100 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
5992047 CCAATAATGC
5992057 AAAAGACAACACAAATGACAA
1 AAAAGACAACACAAATGACAA
5992078 AAAAGACAACACAAATGACAA
1 AAAAGACAACACAAATGACAA
5992099 AA
1 AA
5992101 CATGCCCACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.68, C:0.18, G:0.09, T:0.05
Consensus pattern (21 bp):
AAAAGACAACACAAATGACAA
Found at i:6008140 original size:18 final size:18
Alignment explanation
Indices: 6008113--6008152 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
6008103 TCGGCCGCCT
*
6008113 GTCTATCGTGTCCCTCCC
1 GTCTACCGTGTCCCTCCC
6008131 GTCTACCGTGTCCCTCCC
1 GTCTACCGTGTCCCTCCC
6008149 GTCT
1 GTCT
6008153 CTTCATTTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.05, C:0.45, G:0.17, T:0.33
Consensus pattern (18 bp):
GTCTACCGTGTCCCTCCC
Found at i:6008489 original size:8 final size:8
Alignment explanation
Indices: 6008452--6008532 Score: 67
Period size: 8 Copynumber: 10.1 Consensus size: 8
6008442 TAATTCCCCG
6008452 ACTCTCAA
1 ACTCTCAA
* *
6008460 TCTCTTAA
1 ACTCTCAA
*
6008468 ACTCTTAA
1 ACTCTCAA
*
6008476 ATTCTCAA
1 ACTCTCAA
*
6008484 ACTCTCTAT
1 ACTCTC-AA
*
6008493 A-TCCCAA
1 ACTCTCAA
*
6008500 ACTTTCAA
1 ACTCTCAA
6008508 ACTCTCAA
1 ACTCTCAA
6008516 ACT-TCAAA
1 ACTCTC-AA
6008524 ACTCTCAA
1 ACTCTCAA
6008532 A
1 A
6008533 TTCCCAAAAT
Statistics
Matches: 57, Mismatches: 12, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
7 4 0.07
8 49 0.86
9 4 0.07
ACGTcount: A:0.37, C:0.31, G:0.00, T:0.32
Consensus pattern (8 bp):
ACTCTCAA
Found at i:6012862 original size:24 final size:20
Alignment explanation
Indices: 6012835--6012892 Score: 71
Period size: 20 Copynumber: 2.7 Consensus size: 20
6012825 GCATGGGTAG
6012835 TGCATCGATGCACATGTTAAAGAA
1 TGCATCGATGCAC-TG-T--AGAA
*
6012859 TGCATCAATGCACTGTAGAA
1 TGCATCGATGCACTGTAGAA
6012879 TGCATCGATGCACT
1 TGCATCGATGCACT
6012893 TCAAGGGGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 17 0.53
22 1 0.03
23 2 0.06
24 12 0.38
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.26
Consensus pattern (20 bp):
TGCATCGATGCACTGTAGAA
Found at i:6018344 original size:18 final size:17
Alignment explanation
Indices: 6018314--6018347 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
6018304 ATAAATGTTG
*
6018314 CATTTTAATATTTTTTA
1 CATTTTAACATTTTTTA
6018331 CATTCTTAACATTTTTT
1 CATT-TTAACATTTTTT
6018348 TCTCTTTCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.26, C:0.12, G:0.00, T:0.62
Consensus pattern (17 bp):
CATTTTAACATTTTTTA
Found at i:6018583 original size:25 final size:24
Alignment explanation
Indices: 6018512--6018584 Score: 69
Period size: 25 Copynumber: 3.0 Consensus size: 24
6018502 TTTAACCTAA
6018512 AATG-TTATATTTTATTATATTTTC
1 AATGTTTAT-TTTTATTATATTTTC
* **
6018536 GATGTTATATTTTTAGCATATTTTC
1 AATGTT-TATTTTTATTATATTTTC
6018561 AATTGATTTATTTTTATTA-ATTTT
1 AA-TG-TTTATTTTTATTATATTTT
6018585 TAACCTTAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
24 3 0.08
25 20 0.51
26 14 0.36
27 2 0.05
ACGTcount: A:0.27, C:0.04, G:0.07, T:0.62
Consensus pattern (24 bp):
AATGTTTATTTTTATTATATTTTC
Found at i:6021564 original size:7 final size:7
Alignment explanation
Indices: 6021552--6021589 Score: 76
Period size: 7 Copynumber: 5.4 Consensus size: 7
6021542 GTCAAAGAAA
6021552 GTCAACG
1 GTCAACG
6021559 GTCAACG
1 GTCAACG
6021566 GTCAACG
1 GTCAACG
6021573 GTCAACG
1 GTCAACG
6021580 GTCAACG
1 GTCAACG
6021587 GTC
1 GTC
6021590 GGGTCGGGTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.26, C:0.29, G:0.29, T:0.16
Consensus pattern (7 bp):
GTCAACG
Found at i:6021596 original size:5 final size:5
Alignment explanation
Indices: 6021586--6021643 Score: 62
Period size: 5 Copynumber: 10.8 Consensus size: 5
6021576 AACGGTCAAC
* *
6021586 GGTCG GGTCG GGTCG GGTCAAC GGTCG GGTCG GGTCG GGTCAAC GGTCG
1 GGTCG GGTCG GGTCG GGTC--G GGTCG GGTCG GGTCG GGTC--G GGTCG
6021635 GGTCG GGTC
1 GGTCG GGTC
6021644 AGACCGGTCA
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
5 37 0.82
7 8 0.18
ACGTcount: A:0.07, C:0.22, G:0.52, T:0.19
Consensus pattern (5 bp):
GGTCG
Found at i:6021607 original size:22 final size:22
Alignment explanation
Indices: 6021579--6021643 Score: 130
Period size: 22 Copynumber: 3.0 Consensus size: 22
6021569 AACGGTCAAC
6021579 GGTCAACGGTCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
6021601 GGTCAACGGTCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
6021623 GGTCAACGGTCGGGTCGGGTC
1 GGTCAACGGTCGGGTCGGGTC
6021644 AGACCGGTCA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 43 1.00
ACGTcount: A:0.09, C:0.23, G:0.49, T:0.18
Consensus pattern (22 bp):
GGTCAACGGTCGGGTCGGGTCG
Found at i:6021663 original size:19 final size:18
Alignment explanation
Indices: 6021640--6021737 Score: 117
Period size: 19 Copynumber: 5.2 Consensus size: 18
6021630 GGTCGGGTCG
6021640 GGTCAGACCGGTCAAACC
1 GGTCAGACCGGTCAAACC
6021658 GAGTCAGACCGGTCAAACC
1 G-GTCAGACCGGTCAAACC
6021677 GAGTCAGACCGGTCAAACC
1 G-GTCAGACCGGTCAAACC
*
6021696 GGTTC-GAACCGGTTGAAACC
1 GG-TCAG-ACCGG-TCAAACC
*
6021716 GGTCAAACCGGTCAGAACC
1 GGTCAGACCGGTCA-AACC
6021735 GGT
1 GGT
6021738 TGAAAACCGG
Statistics
Matches: 71, Mismatches: 3, Indels: 11
0.84 0.04 0.13
Matches are distributed among these distances:
18 5 0.07
19 58 0.82
20 8 0.11
ACGTcount: A:0.29, C:0.30, G:0.29, T:0.13
Consensus pattern (18 bp):
GGTCAGACCGGTCAAACC
Found at i:6021683 original size:38 final size:38
Alignment explanation
Indices: 6021640--6021757 Score: 129
Period size: 38 Copynumber: 3.1 Consensus size: 38
6021630 GGTCGGGTCG
6021640 GGTCAGACCGGTCAAACCGAG-TC-AGACCGG-TCAAACC
1 GGTCAGACCGGTCAAACCG-GTTCGA-ACCGGTTCAAACC
*
6021677 GAGTCAGACCGGTCAAACCGGTTCGAACCGGTTGAAACC
1 G-GTCAGACCGGTCAAACCGGTTCGAACCGGTTCAAACC
*
6021716 GGTCAAACCGGTCAGAACCGGTT-GAAAACCGGTT-AAACC
1 GGTCAGACCGGTCA-AACCGGTTCG--AACCGGTTCAAACC
6021755 GGT
1 GGT
6021758 TTCCAGCAGC
Statistics
Matches: 72, Mismatches: 2, Indels: 12
0.84 0.02 0.14
Matches are distributed among these distances:
37 2 0.03
38 38 0.53
39 24 0.33
40 8 0.11
ACGTcount: A:0.30, C:0.28, G:0.28, T:0.14
Consensus pattern (38 bp):
GGTCAGACCGGTCAAACCGGTTCGAACCGGTTCAAACC
Found at i:6021736 original size:29 final size:28
Alignment explanation
Indices: 6021640--6021757 Score: 116
Period size: 29 Copynumber: 4.1 Consensus size: 28
6021630 GGTCGGGTCG
*
6021640 GGTCAG-ACCGGTCAAACCGAGTCAGACC
1 GGTCAGAACCGGTCAAACCG-GTCAAACC
*
6021668 GGTCA-AACCGAGTCAGACCGGTCAAACC
1 GGTCAGAACCG-GTCAAACCGGTCAAACC
*
6021696 GGTTC-GAACCGGTTGAAACCGGTCAAACC
1 GG-TCAGAACCGG-TCAAACCGGTCAAACC
* *
6021725 GGTCAGAACCGGTTGAAAACCGGTTAAACC
1 GGTCAGAACCGG-T-CAAACCGGTCAAACC
6021755 GGT
1 GGT
6021758 TTCCAGCAGC
Statistics
Matches: 77, Mismatches: 6, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
28 21 0.27
29 40 0.52
30 16 0.21
ACGTcount: A:0.30, C:0.28, G:0.28, T:0.14
Consensus pattern (28 bp):
GGTCAGAACCGGTCAAACCGGTCAAACC
Found at i:6021758 original size:9 final size:9
Alignment explanation
Indices: 6021640--6021757 Score: 110
Period size: 9 Copynumber: 12.3 Consensus size: 9
6021630 GGTCGGGTCG
*
6021640 GGTCAGACC
1 GGTCAAACC
6021649 GGTCAAACC
1 GGTCAAACC
*
6021658 GAGTCAGACC
1 G-GTCAAACC
6021668 GGTCAAACC
1 GGTCAAACC
*
6021677 GAGTCAGACC
1 G-GTCAAACC
6021687 GGTCAAACC
1 GGTCAAACC
*
6021696 GGTTCGAACC
1 GG-TCAAACC
*
6021706 GGTTGAAACC
1 GG-TCAAACC
6021716 GGTCAAACC
1 GGTCAAACC
6021725 GGTCAGAACC
1 GGTCA-AACC
*
6021735 GGTTGAAAACC
1 GG-T-CAAACC
*
6021746 GGTTAAACC
1 GGTCAAACC
6021755 GGT
1 GGT
6021758 TTCCAGCAGC
Statistics
Matches: 92, Mismatches: 11, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
9 45 0.49
10 39 0.42
11 7 0.08
12 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.28, T:0.14
Consensus pattern (9 bp):
GGTCAAACC
Done.