Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008054.1 Hibiscus syriacus cultivar Beakdansim tig00110549_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 738886
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
File 3 of 3
Found at i:545315 original size:20 final size:19
Alignment explanation
Indices: 545255--545316 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
545245 TAGATATTTA
*
545255 ATTTTATATCA-TATAAATT
1 ATTTTATAT-ATTATTAATT
*
545274 ATTTTATATATTATTAA-A
1 ATTTTATATATTATTAATT
545292 ATTTTATAT-TTATTTTAATT
1 ATTTTATATATTA--TTAATT
545312 ATTTT
1 ATTTT
545317 GATTTAAGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
17 3 0.08
18 10 0.28
19 18 0.50
20 5 0.14
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (19 bp):
ATTTTATATATTATTAATT
Found at i:545815 original size:31 final size:31
Alignment explanation
Indices: 545778--545837 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
545768 TAGTTGTATG
* *
545778 AATTATTTAAATTTCAGTATTGTAAAACTAA
1 AATTATTTAAATCTCAGTATTGCAAAACTAA
545809 AATTATTTAAATCTCAGTATTGCAAAACT
1 AATTATTTAAATCTCAGTATTGCAAAACT
545838 CTTTTAAGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (31 bp):
AATTATTTAAATCTCAGTATTGCAAAACTAA
Found at i:571987 original size:14 final size:16
Alignment explanation
Indices: 571946--571988 Score: 63
Period size: 14 Copynumber: 2.8 Consensus size: 16
571936 TTATATTAAA
571946 ATATTTTTATTATAATT
1 ATATTTTTATTAT-ATT
571963 ATATTTTTATT-T-TT
1 ATATTTTTATTATATT
571977 ATATTTTTATTA
1 ATATTTTTATTA
571989 CAGTTTAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 13 0.52
16 1 0.04
17 11 0.44
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
ATATTTTTATTATATT
Found at i:573728 original size:26 final size:25
Alignment explanation
Indices: 573697--573768 Score: 73
Period size: 26 Copynumber: 3.0 Consensus size: 25
573687 AGGATAAATG
573697 AAAATAAAAAAGGATCAAATTGAATA
1 AAAATAAAAAAGGATCAAA-TGAATA
573723 AAAATAAAATAA-GAT-AAA--AATA
1 AAAATAAAA-AAGGATCAAATGAATA
*
573745 ACAA-AAAAAAGGATCAAATCGAAT
1 AAAATAAAAAAGGATCAAAT-GAAT
573769 GAGCTTGAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 13
0.74 0.02 0.25
Matches are distributed among these distances:
20 2 0.05
21 7 0.18
22 10 0.26
25 6 0.15
26 12 0.31
27 2 0.05
ACGTcount: A:0.68, C:0.06, G:0.10, T:0.17
Consensus pattern (25 bp):
AAAATAAAAAAGGATCAAATGAATA
Found at i:574974 original size:8 final size:7
Alignment explanation
Indices: 574963--575039 Score: 60
Period size: 6 Copynumber: 11.7 Consensus size: 7
574953 AAAAAAAACA
574963 AAATAATT
1 AAATAA-T
574971 AAATAAT
1 AAATAAT
574978 AAAT-A-
1 AAATAAT
574983 AAATAAT
1 AAATAAT
* *
574990 -TACAAT
1 AAATAAT
574996 -AATAAT
1 AAATAAT
*
575002 AAATGAT
1 AAATAAT
575009 -AATAAT
1 AAATAAT
575015 AAATAAT
1 AAATAAT
575022 -AATAAT
1 AAATAAT
575028 -AATAAT
1 AAATAAT
575034 ATAATA
1 A-AATA
575040 GTATAATATA
Statistics
Matches: 57, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
5 4 0.07
6 27 0.47
7 16 0.28
8 10 0.18
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (7 bp):
AAATAAT
Found at i:574978 original size:3 final size:3
Alignment explanation
Indices: 574972--575039 Score: 68
Period size: 3 Copynumber: 22.3 Consensus size: 3
574962 AAAATAATTA
* * *
574972 AAT AAT AAAT AA- AAT AAT TAC AAT AAT AAT AAAT GAT AAT AAT AAAT
1 AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT -AAT
575019 AAT AAT AAT AAT AAT -AT AAT A
1 AAT AAT AAT AAT AAT AAT AAT A
575040 GTATAATATA
Statistics
Matches: 54, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
2 4 0.07
3 41 0.76
4 9 0.17
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:575012 original size:13 final size:13
Alignment explanation
Indices: 574972--575059 Score: 85
Period size: 13 Copynumber: 6.8 Consensus size: 13
574962 AAAATAATTA
574972 AATAATAAATAA-
1 AATAATAAATAAT
* *
574984 AATAAT-TACAAT
1 AATAATAAATAAT
*
574996 AATAATAAATGAT
1 AATAATAAATAAT
575009 AATAATAAATAAT
1 AATAATAAATAAT
575022 AATAAT-AATAAT
1 AATAATAAATAAT
*
575034 -ATAATAGTATAAT
1 AATAATA-AATAAT
575047 ATATATATAAATA
1 A-ATA-ATAAATA
575060 TTTTAAAAAA
Statistics
Matches: 61, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
11 8 0.13
12 18 0.30
13 26 0.43
15 6 0.10
16 3 0.05
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (13 bp):
AATAATAAATAAT
Found at i:575014 original size:16 final size:17
Alignment explanation
Indices: 574973--575056 Score: 75
Period size: 16 Copynumber: 4.9 Consensus size: 17
574963 AAATAATTAA
* *
574973 ATAATAAATAAAATAATT
1 ATAAT-AATAATATAATG
*
574991 ACAATAATAATA-AATG
1 ATAATAATAATATAATG
*
575007 ATAATAATAA-ATAATA
1 ATAATAATAATATAATG
575023 ATAATAATAATATAATAG
1 ATAATAATAATATAAT-G
575041 TATAAT-ATATATATAA
1 -ATAATAATA-ATATAA
575057 ATATTTTAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 9
0.79 0.09 0.13
Matches are distributed among these distances:
15 1 0.02
16 25 0.45
17 11 0.20
18 7 0.13
19 11 0.20
ACGTcount: A:0.63, C:0.01, G:0.02, T:0.33
Consensus pattern (17 bp):
ATAATAATAATATAATG
Found at i:575133 original size:39 final size:36
Alignment explanation
Indices: 575103--575230 Score: 141
Period size: 37 Copynumber: 3.5 Consensus size: 36
575093 ATGCTTTAAA
575103 AAAAATTATATATTATATATATTTTCAAAATGGTTTTT
1 AAAAATTATATATTATATATATTTTCAAAAT-G-TTTT
* * *
575141 AAAAATTATATATTATATAATGTTTTCATAACGTTTT
1 AAAAATTATATATTATAT-ATATTTTCAAAATGTTTT
* * * *
575178 CAAAAGTATATATTATATATA-TTTAAAAACGTTTT
1 AAAAATTATATATTATATATATTTTCAAAATGTTTT
*
575213 CAAAAACTATATATTATA
1 -AAAAATTATATATTATA
575231 ATTTTCAAAA
Statistics
Matches: 78, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
35 12 0.15
36 17 0.22
37 20 0.26
38 19 0.24
39 10 0.13
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (36 bp):
AAAAATTATATATTATATATATTTTCAAAATGTTTT
Found at i:575158 original size:36 final size:35
Alignment explanation
Indices: 575103--575240 Score: 136
Period size: 36 Copynumber: 3.8 Consensus size: 35
575093 ATGCTTTAAA
*
575103 AAAAATTATATATTATATATATTTTCAAAATGGTTTTT
1 AAAAATTATATA-T-TATATATTTTCAAAA-CGTTTTT
*
575141 AAAAATTATATATTATATAATGTTTTCATAACG-TTTT
1 AAAAATTATATATTATAT-A--TTTTCAAAACGTTTTT
* * * *
575178 CAAAAGTATATATTATATATATTTAAAAACGTTTTC
1 AAAAATTATATATTATATAT-TTTCAAAACGTTTTT
*
575214 AAAAACTATATATTATA-ATTTTCAAAA
1 AAAAATTATATATTATATATTTTCAAAA
575241 ATATATTTTC
Statistics
Matches: 85, Mismatches: 10, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
34 8 0.09
35 10 0.12
36 24 0.28
37 22 0.26
38 13 0.15
39 8 0.09
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (35 bp):
AAAAATTATATATTATATATTTTCAAAACGTTTTT
Found at i:575256 original size:122 final size:117
Alignment explanation
Indices: 575119--575361 Score: 416
Period size: 122 Copynumber: 2.0 Consensus size: 117
575109 TATATATTAT
575119 ATATATTTTCAAAATGGTTTTTAAAAATTATATATTATATAATGTTTTCATAACGTTTTCAAAAG
1 ATATATTTTCAAAATGGTTTTTAAAAATTATATATTATAT-ATGTTTTCATAACGTTTTCAAAAG
575184 TATATATTATATATATTTAAAAACGTTTTCAAAAACTATA-TATTATAATTTTCAAAA
65 --TATA-TATATATATTTAAAAACGTTTTCAAAAACTATATTA-TAT-ATTTTCAAAA
575241 ATATATTTTCAAAATGGTTTTTAAAAATTATATATTATATATGTTTTCATAACGTTTTCAAAAGT
1 ATATATTTTCAAAATGGTTTTTAAAAATTATATATTATATATGTTTTCATAACGTTTTCAAAAGT
*
575306 ATATATATATATTTATAAACGTTTTCAAAAACTATATTATATATTTTCAAAA
66 ATATATATATATTTAAAAACGTTTTCAAAAACTATATTATATATTTTCAAAA
575358 ATAT
1 ATAT
575362 TTTAAAAACT
Statistics
Matches: 119, Mismatches: 1, Indels: 7
0.94 0.01 0.06
Matches are distributed among these distances:
117 14 0.12
118 35 0.29
119 6 0.05
121 24 0.20
122 40 0.34
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.46
Consensus pattern (117 bp):
ATATATTTTCAAAATGGTTTTTAAAAATTATATATTATATATGTTTTCATAACGTTTTCAAAAGT
ATATATATATATTTAAAAACGTTTTCAAAAACTATATTATATATTTTCAAAA
Found at i:575329 original size:32 final size:34
Alignment explanation
Indices: 575259--575351 Score: 102
Period size: 32 Copynumber: 2.7 Consensus size: 34
575249 TCAAAATGGT
* * *
575259 TTTTAAAAATTATATATTATATATGTTTTCATAACG
1 TTTTCAAAACTATATA-TATATAT-TTATCATAACG
*
575295 TTTTCAAAAGTATATATATATATTTAT-A-AACG
1 TTTTCAAAACTATATATATATATTTATCATAACG
575327 TTTTCAAAAACTATAT-TATATATTT
1 TTTTC-AAAACTATATATATATATTT
575352 TCAAAAATAT
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
32 18 0.35
33 10 0.19
34 3 0.06
35 7 0.13
36 14 0.27
ACGTcount: A:0.41, C:0.06, G:0.04, T:0.48
Consensus pattern (34 bp):
TTTTCAAAACTATATATATATATTTATCATAACG
Found at i:575417 original size:37 final size:37
Alignment explanation
Indices: 575338--575431 Score: 108
Period size: 36 Copynumber: 2.6 Consensus size: 37
575328 TTTCAAAAAC
575338 TATAT-TATATATTTTCAAAAATATTTTAAAAACTAT
1 TATATATATATATTTTCAAAAATATTTTAAAAACTAT
* *
575374 TA-ATATACATATTTTCAAAAA-ATGTTT-TAAACTA-
1 TATATATATATATTTTCAAAAATAT-TTTAAAAACTAT
575408 TATATATATATGCATTTTCAAAAA
1 TATATATATAT--ATTTTCAAAAA
575432 CAATTGCAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 9
0.81 0.05 0.15
Matches are distributed among these distances:
34 2 0.04
35 17 0.34
36 20 0.40
37 11 0.22
ACGTcount: A:0.47, C:0.07, G:0.02, T:0.44
Consensus pattern (37 bp):
TATATATATATATTTTCAAAAATATTTTAAAAACTAT
Found at i:576196 original size:84 final size:83
Alignment explanation
Indices: 576083--576924 Score: 809
Period size: 84 Copynumber: 10.2 Consensus size: 83
576073 AAGGTCTTTA
* * * *
576083 GCAGATAACCCTTCTTGACTTAAGCTATGCTGCAAAGGATGTGCCTTGGAGCTGAGCGGAGTCGA
1 GCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGA
*
576148 ACTCGAAAGTCTTTTGGTC
66 ACTCGAAAGTC-TTTGGTG
* * * * *
576167 ACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAACGA--TGCCGTT-GAGCTGA--GTAGTCG
1 GCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCC-TTGGAGCTGAGCGTAGTCG
*
576227 AACTC-AAAGGTCTTTTGTTG
65 AACTCGAAA-GTC-TTTGGTG
* * * * *
576247 GCAGACAACCCTTGTAGACTTAAGTTGTGCTGCAAATGATATGCCTTGGAGCTGAGTGTAGTCGA
1 GCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGA
*
576312 ACTCGAAGGTCTTTGGTTG
66 ACTCGAAAGTCTTTGG-TG
*
576331 GCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGA
1 GCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGA
*
576396 ACTCGAAAGTCTTTTGGTC
66 ACTCGAAAGTC-TTTGGTG
* * * * * *
576415 ACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAACGATGTGCCGTT-GAACTGAGCGTAGTCG
1 GCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCC-TTGGAGCTGAGCGTAGTCG
* *
576479 AACTC-AAAGGTCTTTTGTTT
65 AACTCGAAA-GTC-TTTGGTG
* * * *
576499 GCAGACAACCCTTGTAGACTTAAGTTGTGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGA
1 GCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGA
* *
576564 ACTCGAAGGTATTTGGTTG
66 ACTCGAAAGTCTTTGG-TG
* * * * * * *
576583 GCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTTCCCTCGAAGTTGAGTGTAATCG
1 GCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATG-TGCCTTGGAGCTGAGCGTAGTCG
***
576648 AACTCGGGGGTC-TT--TG
65 AACTCGAAAGTCTTTGGTG
* * * * ** *
576664 GCAGATAGCCCTTCTTGACTTAGGCTATTATGCAAATGATGTGCCTTGGAGTTGAGCGTAGTCGA
1 GCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGA
* *
576729 ACTC-AAAGGTCTTTGCTA
66 ACTCGAAA-GTCTTTGGTG
* * * * * * * * *
576747 ACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGTTATGCCCTTGAAGCTGAGTGTAATCG
1 GCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCG
* *
576812 AACT-TAAGGGTC-TT--TG
65 AACTCGAA-AGTCTTTGGTG
* * * *
576828 GCAGATAGCCCTTCTCGACTTAAGCTATTCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGA
1 GCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGA
*
576893 ACTCGAAGGTC-TTGGTG
66 ACTCGAAAGTCTTTGGTG
* *
576910 GCAGGTAGCCCTTCT
1 GCAGATAACCCTTCT
576925 GGCCTTGAGC
Statistics
Matches: 619, Mismatches: 113, Indels: 54
0.79 0.14 0.07
Matches are distributed among these distances:
79 3 0.00
80 105 0.17
81 77 0.12
82 38 0.06
83 49 0.08
84 310 0.50
85 37 0.06
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (83 bp):
GCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGA
ACTCGAAAGTCTTTGGTG
Found at i:576481 original size:168 final size:166
Alignment explanation
Indices: 576084--576905 Score: 812
Period size: 164 Copynumber: 5.0 Consensus size: 166
576074 AGGTCTTTAG
* * * * * *
576084 CAGATAACCCTTCTTGACTTAAGCTATGCTGCAAAGGATGTGCCTTGGAGCTGAGCGGAGTCGAA
1 CAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTT-GAACTGAGTGTAGTCGAA
* * ** * * * *
576149 CTCGAAAGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAACGA--TGCCGT
65 CTCGAAGGTC-TTTGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCC-T
* *
576212 T-GAGCTGA--GTAGTCGAACTC-AAAGGTCTTTTGTTGG
128 TGGAGCTGAGCGTAGTCGAACTCGAAA-GTCTTTTGGTGA
* * * * *
576248 CAGACAACCCTTGTAGACTTAAGTTGTGCTGCAAATGATATGCCTTGGAGCTGAGTGTAGTCGAA
1 CAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTT-GAACTGAGTGTAGTCGAA
*
576313 CTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTT
65 CTCGAAGGTCTTT-GTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTT
*
576378 GGAGCTGAGCGTAGTCGAACTCGAAAGTCTTTTGGTCA
129 GGAGCTGAGCGTAGTCGAACTCGAAAGTCTTTTGGTGA
* * * * *
576416 CAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAACGATGTGCCGTTGAACTGAGCGTAGTCGAA
1 CAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCC-TTGAACTGAGTGTAGTCGAA
* * * * * *
576481 CTCAAAGGTCTTTTGTTTGCAGACAACCCTTGTAGACTTAAGTTGTGCTGCAAATGATATGCCTT
65 CTCGAAGGTC-TTTGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTT
* * *
576546 GGAGCTGAGCGTAGTCGAACTCGAAGGT-ATTTGGTTGG
129 GGAGCTGAGCGTAGTCGAACTCGAAAGTCTTTTGG-TGA
* * * * *
576584 CAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTTCCCTCGAAGTTGAGTGTAATCGA
1 CAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATG-TGCCTTGAA-CTGAGTGTAGTCGA
** * * * * **
576649 ACTCGGGGGTC--T-TTGGCAGATAGCCCTTCTTGACTTAGGCTATTATGCAAATGATGTGCCTT
64 ACTCGAAGGTCTTTGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTT
* * *
576711 GGAGTTGAGCGTAGTCGAACTC-AAAGGTC-TTTGCTAA
129 GGAGCTGAGCGTAGTCGAACTCGAAA-GTCTTTTGGTGA
* * * * * *
576748 CAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGTTATGCCCTTGAAGCTGAGTGTAATCGA
1 CAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTG-CCTTGAA-CTGAGTGTAGTCGA
* * * * *
576813 ACT-TAAGGGTC--T-TTGGCAGATAGCCCTTCTCGACTTAAGCTATTCTGCAAATGATGTGCCT
64 ACTCGAA-GGTCTTTGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCT
*
576874 TGGAGCTGAGCGTAGTCGAACTCGAAGGTCTT
128 TGGAGCTGAGCGTAGTCGAACTCGAAAGTCTT
576906 GGTGGCAGGT
Statistics
Matches: 552, Mismatches: 88, Indels: 35
0.82 0.13 0.05
Matches are distributed among these distances:
163 4 0.01
164 236 0.43
165 71 0.13
166 12 0.02
167 5 0.01
168 194 0.35
169 30 0.05
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.30
Consensus pattern (166 bp):
CAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTTGAACTGAGTGTAGTCGAAC
TCGAAGGTCTTTGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTTGG
AGCTGAGCGTAGTCGAACTCGAAAGTCTTTTGGTGA
Found at i:579960 original size:18 final size:19
Alignment explanation
Indices: 579920--579964 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
579910 AGTTAATGTG
*
579920 AATGCAATGAAAATAACAA
1 AATGCAAAGAAAATAACAA
579939 AATGCAAAGAAAATAA-AA
1 AATGCAAAGAAAATAACAA
579957 AATGCAAA
1 AATGCAAA
579965 ATGTCTAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 10 0.40
19 15 0.60
ACGTcount: A:0.67, C:0.09, G:0.11, T:0.13
Consensus pattern (19 bp):
AATGCAAAGAAAATAACAA
Found at i:583162 original size:20 final size:20
Alignment explanation
Indices: 583137--583232 Score: 67
Period size: 19 Copynumber: 5.0 Consensus size: 20
583127 CCTGAAAAAA
583137 AAACAA-AATAATTAAATAAG
1 AAACAATAATAA-TAAATAAG
583157 AAACAATAATAATAAAT-A-
1 AAACAATAATAATAAATAAG
* * * *
583175 AAATAATTACAAT-AATAAT
1 AAACAATAATAATAAATAAG
**
583194 AAATGATAATAATAAATAA-
1 AAACAATAATAATAAATAAG
* *
583213 TAATAATAATAATAATATAA
1 AAACAATAATAATAA-ATAA
583233 TAGTATAATA
Statistics
Matches: 63, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
17 3 0.05
18 11 0.17
19 24 0.38
20 20 0.32
21 5 0.08
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.27
Consensus pattern (20 bp):
AAACAATAATAATAAATAAG
Found at i:583169 original size:3 final size:3
Alignment explanation
Indices: 583161--583234 Score: 80
Period size: 3 Copynumber: 24.3 Consensus size: 3
583151 AATAAGAAAC
* * *
583161 AAT AAT AAT AAAT AA- AAT AAT TAC AAT AAT AAT AAAT GAT AAT AAT
1 AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT
583207 AAAT AAT AAT AAT AAT AAT AAT -AT AAT A
1 -AAT AAT AAT AAT AAT AAT AAT AAT AAT A
583235 GTATAATATA
Statistics
Matches: 60, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
2 4 0.07
3 47 0.78
4 9 0.15
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:583204 original size:13 final size:13
Alignment explanation
Indices: 583151--583229 Score: 92
Period size: 13 Copynumber: 6.3 Consensus size: 13
583141 AAAATAATTA
* *
583151 AATAAGAAACAAT
1 AATAATAAATAAT
583164 AATAATAAATAA-
1 AATAATAAATAAT
* *
583176 AATAAT-TACAAT
1 AATAATAAATAAT
*
583188 AATAATAAATGAT
1 AATAATAAATAAT
583201 AATAATAAATAAT
1 AATAATAAATAAT
583214 AATAAT-AATAAT
1 AATAATAAATAAT
583226 AATA
1 AATA
583230 TAATAGTATA
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
11 3 0.05
12 22 0.39
13 31 0.55
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (13 bp):
AATAATAAATAAT
Found at i:583240 original size:19 final size:19
Alignment explanation
Indices: 583162--583251 Score: 73
Period size: 19 Copynumber: 4.8 Consensus size: 19
583152 ATAAGAAACA
* *
583162 ATAATAATAAATAAAATAATT
1 ATAATAAT-AATATAAT-AGT
*
583183 ACAATAATAATA-AAT-G-
1 ATAATAATAATATAATAGT
*
583199 ATAATAATAA-ATAATAAT
1 ATAATAATAATATAATAGT
583217 AATAATAATAATATAATAGT
1 -ATAATAATAATATAATAGT
583237 ATAAT-ATATATATAA
1 ATAATAATA-ATATAA
583252 ATATAAATAT
Statistics
Matches: 58, Mismatches: 5, Indels: 14
0.75 0.06 0.18
Matches are distributed among these distances:
15 1 0.02
16 12 0.21
18 3 0.05
19 24 0.41
20 11 0.19
21 7 0.12
ACGTcount: A:0.63, C:0.01, G:0.02, T:0.33
Consensus pattern (19 bp):
ATAATAATAATATAATAGT
Found at i:583318 original size:36 final size:36
Alignment explanation
Indices: 583262--583358 Score: 99
Period size: 36 Copynumber: 2.6 Consensus size: 36
583252 ATATAAATAT
*
583262 TTTAAAAAACA-TATAATATATAATTTCCAAAAAT-GC
1 TTTAAAAAA-ATTATATTATATAATTTCC-AAAATGGC
* *
583298 TTTAAAAAAATTATATTATATATATTTTCAAAATGGT
1 TTTAAAAAAATTATATTATATA-ATTTCCAAAATGGC
* *
583335 TTTTAAAAATTATATATTATATAA
1 TTTAAAAAAAT-TATATTATATAA
583359 ATGTTTTCAT
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
35 1 0.02
36 24 0.46
37 16 0.31
38 11 0.21
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.42
Consensus pattern (36 bp):
TTTAAAAAAATTATATTATATAATTTCCAAAATGGC
Found at i:583444 original size:38 final size:37
Alignment explanation
Indices: 583261--583444 Score: 162
Period size: 38 Copynumber: 4.9 Consensus size: 37
583251 AATATAAATA
* * *
583261 TTTTAAAAAAC-ATATAATATATAATTTCCAAAAATG
1 TTTTAAAAAACTATATATTATATAATTTTCAAAAACG
* * **
583297 CTTTAAAAAAAT-TATATTATATATATTTTCAAAATGG
1 TTTTAAAAAACTATATATTATATA-ATTTTCAAAAACG
* * *
583334 TTTTTAAAAATTATATATTATATAAATGTTTTC-ATAACG
1 TTTTAAAAAACTATATATTATAT-AA--TTTTCAAAAACG
* *
583373 TTTT-CAAAAGTATATATTATATATATTTT-AAAAACG
1 TTTTAAAAAACTATATATTATATA-ATTTTCAAAAACG
*
583409 TTTTTCAAAAACTATATATTATATAATTTTCAAAAA
1 -TTTTAAAAAACTATATATTATATAATTTTCAAAAA
583445 ATATTTTTCA
Statistics
Matches: 120, Mismatches: 17, Indels: 20
0.76 0.11 0.13
Matches are distributed among these distances:
36 28 0.23
37 29 0.24
38 50 0.42
39 8 0.07
40 5 0.04
ACGTcount: A:0.46, C:0.07, G:0.04, T:0.43
Consensus pattern (37 bp):
TTTTAAAAAACTATATATTATATAATTTTCAAAAACG
Found at i:583473 original size:126 final size:118
Alignment explanation
Indices: 583317--583568 Score: 398
Period size: 126 Copynumber: 2.1 Consensus size: 118
583307 ATTATATTAT
583317 ATATATTTTCAAAATGGTTTTTAAAAATTATATATTATATAAATGTTTTCATAACGTTTTCAAAA
1 ATAT-TTTTCAAAATGGTTTTTAAAAATTATATATTATATAAATGTTTTCATAACGTTTTC--AA
583382 GTATATATTATATATATTTTAAAAACGTTTTTCAAAAACTATATATTATATAATTTTCAAAAA
63 --A-ATA-T-TATATATTTTAAAAACG-TTTTCAAAAACTATATATTATATAATTTTC-AAAA
583445 ATATTTTTCAAAATGGTTTTT-AAAATTATATATTATATAAATGTTTTCATAACGTTTTCAAAAT
1 ATATTTTTCAAAATGGTTTTTAAAAATTATATATTATATAAATGTTTTCATAACGTTTTCAAAAT
*
583509 ATTATATATTTTATAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAA
66 ATTATATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAA
583562 ATATTTT
1 ATATTTT
583569 AAAAACTATA
Statistics
Matches: 123, Mismatches: 1, Indels: 11
0.91 0.01 0.08
Matches are distributed among these distances:
117 11 0.09
118 30 0.24
119 16 0.13
120 1 0.01
121 3 0.02
122 1 0.01
124 2 0.02
126 38 0.31
127 17 0.14
128 4 0.03
ACGTcount: A:0.42, C:0.06, G:0.04, T:0.47
Consensus pattern (118 bp):
ATATTTTTCAAAATGGTTTTTAAAAATTATATATTATATAAATGTTTTCATAACGTTTTCAAAAT
ATTATATATTTTAAAAACGTTTTCAAAAACTATATATTATATAATTTTCAAAA
Found at i:583524 original size:40 final size:39
Alignment explanation
Indices: 583449--583536 Score: 106
Period size: 40 Copynumber: 2.2 Consensus size: 39
583439 CAAAAAATAT
* * *
583449 TTTTCAAAATGGTTTT-TAAAATTATATATTATATAAATG
1 TTTTCAAAA-CGTTTTCAAAAATTATATATTTTATAAATG
* *
583488 TTTTCATAACGTTTTCAAAATATTATATATTTTATAAACG
1 TTTTCAAAACGTTTTCAAAA-ATTATATATTTTATAAATG
583528 TTTTCAAAA
1 TTTTCAAAA
583537 ACTATATATT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
38 5 0.12
39 11 0.27
40 25 0.61
ACGTcount: A:0.40, C:0.07, G:0.06, T:0.48
Consensus pattern (39 bp):
TTTTCAAAACGTTTTCAAAAATTATATATTTTATAAATG
Found at i:583543 original size:28 final size:29
Alignment explanation
Indices: 583495--583552 Score: 91
Period size: 28 Copynumber: 2.0 Consensus size: 29
583485 ATGTTTTCAT
* *
583495 AACGTTTTCAAAATATTATATATTTTATA
1 AACGTTTTCAAAATACTATATATTATATA
583524 AACGTTTTCAAAA-ACTATATATTATATA
1 AACGTTTTCAAAATACTATATATTATATA
583552 A
1 A
583553 TTTTCAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 14 0.52
29 13 0.48
ACGTcount: A:0.45, C:0.09, G:0.03, T:0.43
Consensus pattern (29 bp):
AACGTTTTCAAAATACTATATATTATATA
Found at i:583573 original size:36 final size:35
Alignment explanation
Indices: 583507--583620 Score: 137
Period size: 36 Copynumber: 3.3 Consensus size: 35
583497 CGTTTTCAAA
* *
583507 ATATTATATATTTT-ATAAACGTTTTCAAAAACTAT
1 ATATTATATATTTTCAAAAATGTTTT-AAAAACTAT
*
583542 ATATTATATAATTTTCAAAAATATTTTAAAAACTAT
1 ATATTATAT-ATTTTCAAAAATGTTTTAAAAACTAT
* *
583578 ATAATACATATTTTC-AAAATGTTTT--AAACTAT
1 ATATTATATATTTTCAAAAATGTTTTAAAAACTAT
583610 ATATTATATAT
1 ATATTATATAT
583621 GTATTTTCAA
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
32 16 0.23
34 9 0.13
35 15 0.22
36 21 0.30
37 8 0.12
ACGTcount: A:0.46, C:0.07, G:0.02, T:0.46
Consensus pattern (35 bp):
ATATTATATATTTTCAAAAATGTTTTAAAAACTAT
Found at i:583613 original size:34 final size:34
Alignment explanation
Indices: 583535--583632 Score: 101
Period size: 34 Copynumber: 2.8 Consensus size: 34
583525 ACGTTTTCAA
*
583535 AAACTATATATTATATA-ATTTTCAAAAATATTTT
1 AAACTATATATAATATATATTTTC-AAAATATTTT
* * *
583569 AAA-AACTATATAATACATATTTTCAAAATGTTTT
1 AAACTA-TATATAATATATATTTTCAAAATATTTT
*
583603 AAACTATATATTATATATGTATTTTCAAAA
1 AAACTATATA-TA-ATATATATTTTCAAAA
583633 ACAATTTGCA
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
33 1 0.02
34 28 0.54
35 9 0.17
36 14 0.27
ACGTcount: A:0.47, C:0.07, G:0.02, T:0.44
Consensus pattern (34 bp):
AAACTATATATAATATATATTTTCAAAATATTTT
Found at i:587427 original size:26 final size:27
Alignment explanation
Indices: 587396--587448 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
587386 GTGATAATAT
587396 GGCGTATC-TTTAAGCTTCTGGTTCAA
1 GGCGTATCTTTTAAGCTTCTGGTTCAA
587422 GGCGTATCTTTTAAGCTTCTGGTTCAA
1 GGCGTATCTTTTAAGCTTCTGGTTCAA
587449 AGGCTTAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 8 0.31
27 18 0.69
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.40
Consensus pattern (27 bp):
GGCGTATCTTTTAAGCTTCTGGTTCAA
Found at i:587900 original size:150 final size:151
Alignment explanation
Indices: 587573--587873 Score: 527
Period size: 150 Copynumber: 2.0 Consensus size: 151
587563 AAACGTTCAA
***
587573 CTATTATTTCGTATCTCTAAAAATAATAATGATTCTTTTAACTATTAAAATAAATTAATTTATAC
1 CTATTATTTCGTAAAACTAAAAATAATAATGATTC-TTTAACTATTAAAATAAATTAATTTATAC
587638 ATTTAAATGTTTCTCTTACTAAGTCTTAAATTGTTAATGAAGCATAGGTAAACATGTAATCCCCT
65 ATTTAAATGTTTCTCTTACTAAGTCTTAAATTGTTAATGAAGCATAGGTAAACATGTAATCCCCT
587703 GTAGTATAATTTTTATTGTAAT
130 GTAGTATAATTTTTATTGTAAT
**
587725 CTATTATTTCGTAATCCTAAAAATAATAATGATTC-TTAACTATTAAAATAAATTAATTTATACA
1 CTATTATTTCGTAAAACTAAAAATAATAATGATTCTTTAACTATTAAAATAAATTAATTTATACA
587789 TTTAAATGTTTCTCTTACTAAGTCTTAAATTGTTAATGAAGCATA-GTAAACATGTAATCCCCTG
66 TTTAAATGTTTCTCTTACTAAGTCTTAAATTGTTAATGAAGCATAGGTAAACATGTAATCCCCTG
587853 TAGTATAA-TTTTATTGTAAT
131 TAGTATAATTTTTATTGTAAT
587873 C
1 C
587874 ACTCTGTTGT
Statistics
Matches: 146, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
148 13 0.09
149 27 0.18
150 74 0.51
152 32 0.22
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.43
Consensus pattern (151 bp):
CTATTATTTCGTAAAACTAAAAATAATAATGATTCTTTAACTATTAAAATAAATTAATTTATACA
TTTAAATGTTTCTCTTACTAAGTCTTAAATTGTTAATGAAGCATAGGTAAACATGTAATCCCCTG
TAGTATAATTTTTATTGTAAT
Found at i:591395 original size:29 final size:29
Alignment explanation
Indices: 591361--591419 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
591351 CCTAAATTAA
591361 TTTGATGTCATTGCTTACATCAATTTAGT
1 TTTGATGTCATTGCTTACATCAATTTAGT
*
591390 TTTGATGTCATTTCTTACATCAATTTAGT
1 TTTGATGTCATTGCTTACATCAATTTAGT
591419 T
1 T
591420 AGGTGAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.24, C:0.14, G:0.12, T:0.51
Consensus pattern (29 bp):
TTTGATGTCATTGCTTACATCAATTTAGT
Found at i:596072 original size:29 final size:29
Alignment explanation
Indices: 596036--596094 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
596026 CATAAATTAA
596036 TTTGATGTCATTGCTTACATCAATTTAGT
1 TTTGATGTCATTGCTTACATCAATTTAGT
596065 TTTGATGTCATTGCTTACATCAATTTAGT
1 TTTGATGTCATTGCTTACATCAATTTAGT
596094 T
1 T
596095 AGGTGAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.24, C:0.14, G:0.14, T:0.49
Consensus pattern (29 bp):
TTTGATGTCATTGCTTACATCAATTTAGT
Found at i:598330 original size:21 final size:20
Alignment explanation
Indices: 598290--598331 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
598280 CCAACTTACA
*
598290 ATGCATTATGAACCATTATT
1 ATGCATTATCAACCATTATT
*
598310 ATGCATTATACAACTATTATT
1 ATGCATTAT-CAACCATTATT
598331 A
1 A
598332 GTTGTATGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.38, C:0.14, G:0.07, T:0.40
Consensus pattern (20 bp):
ATGCATTATCAACCATTATT
Found at i:603002 original size:21 final size:21
Alignment explanation
Indices: 602976--603020 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
602966 GATTTATGGG
* *
602976 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
602997 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
603018 CAA
1 CAA
603021 ACGACAGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:603396 original size:18 final size:16
Alignment explanation
Indices: 603375--603414 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 16
603365 TGATTATACG
603375 TATATGAATGACATGAAT
1 TATATGAATG-CATG-AT
*
603393 TATATGTATGCATGAT
1 TATATGAATGCATGAT
603409 TATATG
1 TATATG
603415 TGTTAACATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.38
17 4 0.19
18 9 0.43
ACGTcount: A:0.38, C:0.05, G:0.17, T:0.40
Consensus pattern (16 bp):
TATATGAATGCATGAT
Found at i:603412 original size:16 final size:18
Alignment explanation
Indices: 603375--603415 Score: 59
Period size: 16 Copynumber: 2.4 Consensus size: 18
603365 TGATTATACG
*
603375 TATATGAATGACATGAAT
1 TATATGTATGACATGAAT
603393 TATATGTATG-CATG-AT
1 TATATGTATGACATGAAT
603409 TATATGT
1 TATATGT
603416 GTTAACATGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 9 0.41
17 4 0.18
18 9 0.41
ACGTcount: A:0.37, C:0.05, G:0.17, T:0.41
Consensus pattern (18 bp):
TATATGTATGACATGAAT
Found at i:603929 original size:31 final size:31
Alignment explanation
Indices: 603891--604015 Score: 171
Period size: 31 Copynumber: 4.0 Consensus size: 31
603881 AGGGTCGAGG
*
603891 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGAACATATGGACT
* *
603922 GTTTACCTATGTTCTTCGGAACATACGAACT
1 GTTTACCTATGTTCTTCGGAACATATGGACT
* *
603953 GTTTACCTATGTCCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGAACATATGGACT
* *
603984 GATTACCTAGGTTCTTCGGAATC-TATGGACT
1 GTTTACCTATGTTCTTCGGAA-CATATGGACT
604015 G
1 G
604016 GTCATTCGGG
Statistics
Matches: 82, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
31 81 0.99
32 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGAACATATGGACT
Found at i:607083 original size:21 final size:21
Alignment explanation
Indices: 607057--607101 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
607047 GATTTCTGGG
* *
607057 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
607078 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
607099 CAA
1 CAA
607102 ACAACAGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:607475 original size:18 final size:16
Alignment explanation
Indices: 607454--607493 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 16
607444 TGATTATACG
607454 TATATGAATGACATGAAT
1 TATATGAATG-CATG-AT
*
607472 TATATGTATGCATGAT
1 TATATGAATGCATGAT
607488 TATATG
1 TATATG
607494 TGTTAACATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.38
17 4 0.19
18 9 0.43
ACGTcount: A:0.38, C:0.05, G:0.17, T:0.40
Consensus pattern (16 bp):
TATATGAATGCATGAT
Found at i:607491 original size:16 final size:18
Alignment explanation
Indices: 607454--607494 Score: 59
Period size: 16 Copynumber: 2.4 Consensus size: 18
607444 TGATTATACG
*
607454 TATATGAATGACATGAAT
1 TATATGTATGACATGAAT
607472 TATATGTATG-CATG-AT
1 TATATGTATGACATGAAT
607488 TATATGT
1 TATATGT
607495 GTTAACATGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 9 0.41
17 4 0.18
18 9 0.41
ACGTcount: A:0.37, C:0.05, G:0.17, T:0.41
Consensus pattern (18 bp):
TATATGTATGACATGAAT
Found at i:608009 original size:31 final size:31
Alignment explanation
Indices: 607971--608126 Score: 242
Period size: 31 Copynumber: 5.0 Consensus size: 31
607961 AGGGTCGAGG
*
607971 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGAACATATGGACT
608002 GTTTACCTATGTTCTTCGGAACATATGGACT
1 GTTTACCTATGTTCTTCGGAACATATGGACT
*
608033 GTTTACCTATGTTCTTCGGAACATACGGACT
1 GTTTACCTATGTTCTTCGGAACATATGGACT
* *
608064 GTTTACCTATGTCCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGAACATATGGACT
* *
608095 GATTACCTAGGTTCTTCGGAATC-TATGGACT
1 GTTTACCTATGTTCTTCGGAA-CATATGGACT
608126 G
1 G
608127 GTCCTTCGGG
Statistics
Matches: 115, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
31 114 0.99
32 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.37
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGAACATATGGACT
Found at i:610812 original size:6 final size:6
Alignment explanation
Indices: 610801--610829 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
610791 GTAATATTAT
610801 ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
610830 CATCCAGTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.52
Consensus pattern (6 bp):
ATTCTG
Found at i:620393 original size:128 final size:127
Alignment explanation
Indices: 620245--620620 Score: 576
Period size: 118 Copynumber: 3.0 Consensus size: 127
620235 GCAACGTTAC
*
620245 AATTTTTATTAATGATTAAATTAGATTGAAGTAGATTAAATTGTAAGATAGATAAAAATACATTG
1 AATTTTTTTTAATGATTAAA-TAGATT-AAGTAGATTAAATTGTAAGATAGATAAAAATACATTG
*
620310 AAATTAGATAAATAAATATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATA-
64 AAATTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAG
*
620373 AATTTTTTTTAATGATT--A-A-ATT-A-T--ATTAAATTGTAAGATAGATAAAAATACATTAAA
1 AATTTTTTTTAATGATTAAATAGATTAAGTAGATTAAATTGTAAGATAGATAAAAATACATTGAA
620430 ATTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAG
66 ATTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAG
** *
620492 AA-TTTTTTTAATGATTAAAGTAGATTAAAGTAGATTAAATTACAAGATAGATAAAAATAAATTG
1 AATTTTTTTTAATGATTAAA-TAGATT-AAGTAGATTAAATTGTAAGATAGATAAAAATACATTG
*
620556 AAATTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATATAACAAACATAAAAA-ATAG
64 AAATTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAG
620619 AA
1 AA
620621 AATACTAATA
Statistics
Matches: 229, Mismatches: 8, Indels: 23
0.88 0.03 0.09
Matches are distributed among these distances:
118 106 0.46
119 2 0.01
120 2 0.01
121 1 0.00
122 1 0.00
123 6 0.03
124 1 0.00
125 1 0.00
126 2 0.01
127 6 0.03
128 101 0.44
ACGTcount: A:0.54, C:0.06, G:0.08, T:0.32
Consensus pattern (127 bp):
AATTTTTTTTAATGATTAAATAGATTAAGTAGATTAAATTGTAAGATAGATAAAAATACATTGAA
ATTAGATAAATAAACATACTAATTTTTTGAAACATAAAAATACAACAAACATAAAAACATAG
Found at i:620519 original size:10 final size:10
Alignment explanation
Indices: 620504--620530 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
620494 TTTTTTTAAT
620504 GATTAAAGTA
1 GATTAAAGTA
620514 GATTAAAGTA
1 GATTAAAGTA
620524 GATTAAA
1 GATTAAA
620531 TTACAAGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.19, T:0.30
Consensus pattern (10 bp):
GATTAAAGTA
Found at i:620542 original size:27 final size:26
Alignment explanation
Indices: 620505--620561 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
620495 TTTTTTAATG
* * *
620505 ATTAAAGTAGATTAAAGTAGATT-AA
1 ATTAAAGTAGATAAAAATAAATTGAA
620530 ATTACAAGATAGATAAAAATAAATTGAA
1 ATTA-AAG-TAGATAAAAATAAATTGAA
620558 ATTA
1 ATTA
620562 GATAAATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
25 4 0.15
26 3 0.12
27 13 0.50
28 6 0.23
ACGTcount: A:0.56, C:0.02, G:0.12, T:0.30
Consensus pattern (26 bp):
ATTAAAGTAGATAAAAATAAATTGAA
Found at i:631131 original size:2 final size:2
Alignment explanation
Indices: 631120--631172 Score: 99
Period size: 2 Copynumber: 27.0 Consensus size: 2
631110 AACAATTAAA
631120 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
631161 AT AT AT AT AT AT
1 AT AT AT AT AT AT
631173 TAGTTAATGA
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 49 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:638725 original size:15 final size:16
Alignment explanation
Indices: 638705--638736 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
638695 TTTTATTAAC
638705 CCCTTTTGTTT-AAGT
1 CCCTTTTGTTTGAAGT
638720 CCCTTTTGTTTGAAGT
1 CCCTTTTGTTTGAAGT
638736 C
1 C
638737 TCTAACGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.12, C:0.22, G:0.16, T:0.50
Consensus pattern (16 bp):
CCCTTTTGTTTGAAGT
Found at i:642750 original size:21 final size:21
Alignment explanation
Indices: 642726--642768 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
642716 TTATATATTT
642726 AAAAAAACACAAAA-TTTAAA
1 AAAAAAACACAAAACTTTAAA
* *
642746 AAAAAATCCCAAAACTTTAAA
1 AAAAAAACACAAAACTTTAAA
642767 AA
1 AA
642769 TCTTCATTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.70, C:0.14, G:0.00, T:0.16
Consensus pattern (21 bp):
AAAAAAACACAAAACTTTAAA
Found at i:647954 original size:29 final size:29
Alignment explanation
Indices: 647863--647956 Score: 84
Period size: 29 Copynumber: 3.2 Consensus size: 29
647853 ACTTTTATTT
* * * *
647863 TAAATTAGTCCCCAAACTTTTAAATATTT
1 TAAATTAGTCCCTAAAATTTTAAACATTC
* *
647892 TAATTTCA-TCCCT-AAATTATAAAGTTCATTC
1 TAAATT-AGTCCCTAAAATTTTAAA---CATTC
647923 TAAATTAGTCCCTAAAATTTTAAACATTC
1 TAAATTAGTCCCTAAAATTTTAAACATTC
647952 TAAAT
1 TAAAT
647957 CCATCCTCAA
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
28 8 0.16
29 19 0.37
30 2 0.04
31 13 0.25
32 9 0.18
ACGTcount: A:0.39, C:0.17, G:0.03, T:0.40
Consensus pattern (29 bp):
TAAATTAGTCCCTAAAATTTTAAACATTC
Found at i:648127 original size:57 final size:57
Alignment explanation
Indices: 648032--648159 Score: 134
Period size: 57 Copynumber: 2.2 Consensus size: 57
648022 TTTTTGGAAT
* * * * *
648032 TTTTAAAAGTTTGGAAACTAATTTAGAATGAGGGTCATAGTTTAGGGATGAATTTGAAA
1 TTTTAAAAG-TTGG-AACCAATTTAGAACGACGATCATAATTTAGGGATGAATTTGAAA
* *
648091 TTTTCAAAAGTTGG-ACCAATTTAGAACGACGATCATAATTTGGGGATGGATTT-AGAA
1 TTTT-AAAAGTTGGAACCAATTTAGAACGACGATCATAATTTAGGGATGAATTTGA-AA
648148 TGTTTAAAAGTT
1 T-TTTAAAAGTT
648160 TAAGGACTAA
Statistics
Matches: 59, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
56 1 0.02
57 42 0.71
58 3 0.05
59 8 0.14
60 5 0.08
ACGTcount: A:0.36, C:0.06, G:0.23, T:0.35
Consensus pattern (57 bp):
TTTTAAAAGTTGGAACCAATTTAGAACGACGATCATAATTTAGGGATGAATTTGAAA
Found at i:651634 original size:21 final size:21
Alignment explanation
Indices: 651597--651636 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
651587 TCTGCTGAAA
**
651597 CTCCACCTGTTTTGGAGTATG
1 CTCCACCTGTTGCGGAGTATG
651618 CTCCACCTGTTGCGGAGTA
1 CTCCACCTGTTGCGGAGTA
651637 CTACTTGTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.28, G:0.25, T:0.33
Consensus pattern (21 bp):
CTCCACCTGTTGCGGAGTATG
Found at i:658284 original size:3 final size:3
Alignment explanation
Indices: 658276--658301 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
658266 TCTAAAACAA
658276 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
658302 AAGTTTCATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:671996 original size:48 final size:48
Alignment explanation
Indices: 671935--672031 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
671925 AAATTTCCTT
671935 AGGGTAATTGACATTCCGCATTGACAGCTATTAAATAGAATTTGTAGC
1 AGGGTAATTGACATTCCGCATTGACAGCTATTAAATAGAATTTGTAGC
*
671983 AGGGTAATTGACATTTCGCATTGACAGCTATTAAATAGAATTTGTAGC
1 AGGGTAATTGACATTCCGCATTGACAGCTATTAAATAGAATTTGTAGC
672031 A
1 A
672032 AAAATGGCAG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.32
Consensus pattern (48 bp):
AGGGTAATTGACATTCCGCATTGACAGCTATTAAATAGAATTTGTAGC
Found at i:681259 original size:73 final size:76
Alignment explanation
Indices: 681161--681365 Score: 269
Period size: 74 Copynumber: 2.8 Consensus size: 76
681151 GTTGTACAAG
* * *
681161 GGGGGAATCGGTACCCCCT-TGGGGGGG-ATCGGTTCCCTCCGAGCATACTGGAATTCTCAGAG-
1 GGGGGAATCGGTTCCTCCTATGGGGGGGAATCGGTTCCCTCCGAGCATACTGGAAATCTC-GAGC
**
681223 CAAAACTGTTTA
65 CAAAACCATTTA
* *
681235 -GGGGAATCGGTTCCTCCTAT-GGGGGGAATCGGTTCCCTCCGAGCATTCTGGAAATCTCGGGCC
1 GGGGGAATCGGTTCCTCCTATGGGGGGGAATCGGTTCCCTCCGAGCATACTGGAAATCTCGAGCC
681298 AAAACCATTTA
66 AAAACCATTTA
* *
681309 GGGGGGAATCGGTTCCTCCTATGGGGGGGAATCGGTTCCCTCTGAGCAT-CTGTAAAT
1 -GGGGGAATCGGTTCCTCCTATGGGGGGGAATCGGTTCCCTCCGAGCATACTGGAAAT
681366 TTTTGGCTTT
Statistics
Matches: 116, Mismatches: 9, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
73 24 0.21
74 40 0.34
76 27 0.23
77 25 0.22
ACGTcount: A:0.20, C:0.24, G:0.31, T:0.24
Consensus pattern (76 bp):
GGGGGAATCGGTTCCTCCTATGGGGGGGAATCGGTTCCCTCCGAGCATACTGGAAATCTCGAGCC
AAAACCATTTA
Found at i:681967 original size:17 final size:17
Alignment explanation
Indices: 681945--681988 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
681935 TTCATAAATC
*
681945 CAAAATCCAACAATCCA
1 CAAAATCAAACAATCCA
681962 CAAAATCAAACAATCCA
1 CAAAATCAAACAATCCA
681979 -AAATATCAAA
1 CAAA-ATCAAA
681989 AATGTTGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 3 0.12
17 22 0.88
ACGTcount: A:0.59, C:0.27, G:0.00, T:0.14
Consensus pattern (17 bp):
CAAAATCAAACAATCCA
Found at i:683203 original size:81 final size:81
Alignment explanation
Indices: 683068--683230 Score: 317
Period size: 81 Copynumber: 2.0 Consensus size: 81
683058 GGATACGTTC
*
683068 TTCCCTAATCTTATAGGAGTCAAAATATTGGTAAAACCAATAACGATACTCTTTAGGACCCGGTT
1 TTCCCTAATCTTATAGGAGTCAAAATATTGGTAAAACCAATAACGATAATCTTTAGGACCCGGTT
683133 GATTGAAACAGAATTT
66 GATTGAAACAGAATTT
683149 TTCCCTAATCTTATAGGAGTCAAAATATTGGTAAAACCAATAACGATAATCTTTAGGACCCGGTT
1 TTCCCTAATCTTATAGGAGTCAAAATATTGGTAAAACCAATAACGATAATCTTTAGGACCCGGTT
683214 GATTGAAACAGAATTT
66 GATTGAAACAGAATTT
683230 T
1 T
683231 GGATAGTCAA
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (81 bp):
TTCCCTAATCTTATAGGAGTCAAAATATTGGTAAAACCAATAACGATAATCTTTAGGACCCGGTT
GATTGAAACAGAATTT
Found at i:687621 original size:22 final size:21
Alignment explanation
Indices: 687579--687618 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
687569 GAGTTTGTTT
*
687579 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
687600 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
687619 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:689690 original size:76 final size:76
Alignment explanation
Indices: 689530--689725 Score: 245
Period size: 75 Copynumber: 2.6 Consensus size: 76
689520 CGTTGTACAA
* * * * *
689530 GGGGGAATCGGTACC-CCT-TGGGGGGGATTGGTTCCCTCCGAGCATACTGGAATTCTCGGAGTA
1 GGGGGAATCGGTTCCTCCTATGGGGGGAATCGGTTCCCTCCGAGCATACTGGAAATCTCGGAGCA
**
689593 AAACTGTTTAG
66 AAACCATTTAG
* * *
689604 GGGGGAATCGGTTCCTCCTAT-GGGGGAATCGGTTCCCTTCGAGCATTCTGGAAATCTCGGGGCC
1 GGGGGAATCGGTTCCTCCTATGGGGGGAATCGGTTCCCTCCGAGCATACTGGAAATCTCGGAG-C
689668 AAAACCATTTAG
65 AAAACCATTTAG
** *
689680 GGGGGAATCGGTTATTCCTATGGGGGGAATCGGTTCCCTCTGAGCA
1 GGGGGAATCGGTTCCTCCTATGGGGGGAATCGGTTCCCTCCGAGCA
689726 ATCTGTAATT
Statistics
Matches: 104, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
74 14 0.13
75 38 0.37
76 30 0.29
77 22 0.21
ACGTcount: A:0.20, C:0.21, G:0.33, T:0.26
Consensus pattern (76 bp):
GGGGGAATCGGTTCCTCCTATGGGGGGAATCGGTTCCCTCCGAGCATACTGGAAATCTCGGAGCA
AAACCATTTAG
Found at i:696638 original size:29 final size:29
Alignment explanation
Indices: 696596--696677 Score: 128
Period size: 29 Copynumber: 2.8 Consensus size: 29
696586 AAACTAAATT
*
696596 GATGTCATTGCTTACATCATTTAAGTAAA
1 GATGTCATTGCTTACATCATTTAAATAAA
*
696625 GATGTCATTGCTTACATCATTTAAATAAT
1 GATGTCATTGCTTACATCATTTAAATAAA
*
696654 GATGTCATTGCTTATATCAATTTA
1 GATGTCATTGCTTACATC-ATTTA
696678 GTTAGGTGAG
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
29 44 0.90
30 5 0.10
ACGTcount: A:0.33, C:0.13, G:0.12, T:0.41
Consensus pattern (29 bp):
GATGTCATTGCTTACATCATTTAAATAAA
Found at i:699379 original size:21 final size:21
Alignment explanation
Indices: 699337--699379 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
699327 TTTCTGGGCT
* *
699337 AGGGGAATCGGTACCCATTCA
1 AGGGGAATCGATACCCACTCA
* *
699358 AGGGGAATCGATCCCCCCTCA
1 AGGGGAATCGATACCCACTCA
699379 A
1 A
699380 ACGAATATGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.30, G:0.26, T:0.16
Consensus pattern (21 bp):
AGGGGAATCGATACCCACTCA
Found at i:700540 original size:30 final size:30
Alignment explanation
Indices: 700504--700809 Score: 594
Period size: 30 Copynumber: 10.2 Consensus size: 30
700494 AAGGAACATA
700504 TGGATAGTTACCGAGGATCTTTATGACCTC
1 TGGATAGTTACCGAGGATCTTTATGACCTC
*
700534 TGGATAGTTACCGAGGATCTTTATGACATC
1 TGGATAGTTACCGAGGATCTTTATGACCTC
700564 TGGATAGTTACCGAGGATCTTTATGACCTC
1 TGGATAGTTACCGAGGATCTTTATGACCTC
*
700594 TGGGTAGTTACCGAGGATCTTTATGACCTC
1 TGGATAGTTACCGAGGATCTTTATGACCTC
700624 TGGATAGTTACCGAGGATCTTTATGACCTC
1 TGGATAGTTACCGAGGATCTTTATGACCTC
700654 TGGATAGTTACCGAGGATCTTTATGACCTC
1 TGGATAGTTACCGAGGATCTTTATGACCTC
700684 TGGATAGTTACCGAGGATCTTTATGACCTC
1 TGGATAGTTACCGAGGATCTTTATGACCTC
700714 TGGATAGTTACCGAGGATCTTTATGACCTC
1 TGGATAGTTACCGAGGATCTTTATGACCTC
700744 TGGATAGTTACCGAGGATCTTTATGACCTC
1 TGGATAGTTACCGAGGATCTTTATGACCTC
700774 TGGATAGTTACCGAGGATCTTTATGACCTC
1 TGGATAGTTACCGAGGATCTTTATGACCTC
700804 TGGATA
1 TGGATA
700810 AGTCTTTCGG
Statistics
Matches: 272, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
30 272 1.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (30 bp):
TGGATAGTTACCGAGGATCTTTATGACCTC
Found at i:703123 original size:29 final size:29
Alignment explanation
Indices: 703081--703162 Score: 137
Period size: 29 Copynumber: 2.8 Consensus size: 29
703071 AAACTAAATT
*
703081 GATGTCATTGCTTACATCATTTAAGTAAA
1 GATGTCATTGCTTACATCATTTAAATAAA
*
703110 GATGTCATTGCTTACATCATTTAAATAAT
1 GATGTCATTGCTTACATCATTTAAATAAA
703139 GATGTCATTGCTTACATCAATTTA
1 GATGTCATTGCTTACATC-ATTTA
703163 GTTAGGTGAA
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
29 45 0.90
30 5 0.10
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (29 bp):
GATGTCATTGCTTACATCATTTAAATAAA
Found at i:709489 original size:10 final size:10
Alignment explanation
Indices: 709457--709503 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 10
709447 TTTGAATTTA
709457 AAAAAAAT-C
1 AAAAAAATAC
* **
709466 AGAAAAATTT
1 AAAAAAATAC
709476 AAAAAAATAC
1 AAAAAAATAC
709486 AAAAAAAATAC
1 -AAAAAAATAC
709497 AAAAAAA
1 AAAAAAA
709504 ATTAGTATGT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
9 7 0.23
10 14 0.45
11 10 0.32
ACGTcount: A:0.79, C:0.06, G:0.02, T:0.13
Consensus pattern (10 bp):
AAAAAAATAC
Found at i:709491 original size:20 final size:20
Alignment explanation
Indices: 709451--709492 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
709441 AATCTATTTG
*
709451 AATTTAAAAAAAATCAGAAA
1 AATTTAAAAAAAATCAAAAA
709471 AATTT-AAAAAAATACAAAAA
1 AATTTAAAAAAAAT-CAAAAA
709491 AA
1 AA
709493 ATACAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.74, C:0.05, G:0.02, T:0.19
Consensus pattern (20 bp):
AATTTAAAAAAAATCAAAAA
Found at i:709573 original size:16 final size:18
Alignment explanation
Indices: 709535--709574 Score: 50
Period size: 16 Copynumber: 2.4 Consensus size: 18
709525 ATTTCAATGT
*
709535 ATTTTTATCTATCTTGCA
1 ATTTTAATCTATCTTGCA
709553 A-TTTAATCTA-CTTG-A
1 ATTTTAATCTATCTTGCA
709568 ATTTTAA
1 ATTTTAA
709575 AAAAAATACA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
15 2 0.10
16 9 0.45
17 8 0.40
18 1 0.05
ACGTcount: A:0.30, C:0.12, G:0.05, T:0.53
Consensus pattern (18 bp):
ATTTTAATCTATCTTGCA
Found at i:709629 original size:109 final size:109
Alignment explanation
Indices: 709428--709687 Score: 324
Period size: 109 Copynumber: 2.3 Consensus size: 109
709418 TATATATTTT
* * *
709428 TATCTTACAATTTAATCTATTTGAATTTAAAAAAAATCAGAAAAATTTAAAAAAATACAAAAAAA
1 TATCTTACAATTTAATATACTTGAATTTAAAAAAAAT----ACAA---AAAAAAATACAAAAAAA
* *
709493 ATACAAAAAAAATTAGTATGTTTATTTATCTAATTTCAATGTATTTTTATC
59 ATACAAAAAAAATTAGTATGATTATTTATCTAATTTCAATATATTTTTATC
* * * **
709544 TATCTTGCAATTTAATCTACTTGAATTTTAAAAAAAATACAAAAAAAAAT-CAGAAAAGTTACAA
1 TATCTTACAATTTAATATACTTGAA-TTTAAAAAAAATACAAAAAAAAATACAAAAAAAATACAA
709608 AAAAAATTAGTATGATTATTTATCTAATTTCAATATATTTTTATC
65 AAAAAATTAGTATGATTATTTATCTAATTTCAATATATTTTTATC
* * *
709653 TATCTTATAATTTAATATATTTTAATTTAAAAAAA
1 TATCTTACAATTTAATATACTTGAATTTAAAAAAA
709688 CACATATAAC
Statistics
Matches: 130, Mismatches: 13, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
108 10 0.08
109 74 0.57
110 8 0.06
113 3 0.02
116 23 0.18
117 12 0.09
ACGTcount: A:0.49, C:0.08, G:0.04, T:0.39
Consensus pattern (109 bp):
TATCTTACAATTTAATATACTTGAATTTAAAAAAAATACAAAAAAAAATACAAAAAAAATACAAA
AAAAATTAGTATGATTATTTATCTAATTTCAATATATTTTTATC
Found at i:709657 original size:25 final size:25
Alignment explanation
Indices: 709623--709675 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 25
709613 ATTAGTATGA
*
709623 TTATTTATC-TAATTTCAATATATTT
1 TTATCTATCTTAATTT-AATATATTT
709648 TTATCTATCTTATAATTTAATATATTT
1 TTATCTATC-T-TAATTTAATATATTT
709675 T
1 T
709676 AATTTAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 8 0.33
27 10 0.42
28 6 0.25
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (25 bp):
TTATCTATCTTAATTTAATATATTT
Found at i:714457 original size:34 final size:34
Alignment explanation
Indices: 714393--714458 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
714383 TCTCTAAAGA
**
714393 ACCTCGTAAGGTCCTATGAAACGAGGAGTCAAAC
1 ACCTCGTAAGGTCCTATGAAACGAAAAGTCAAAC
*
714427 ACCTTGTAAGGTCCTATGAAACGAAAAGTCAA
1 ACCTCGTAAGGTCCTATGAAACGAAAAGTCAA
714459 CTTGCCCTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (34 bp):
ACCTCGTAAGGTCCTATGAAACGAAAAGTCAAAC
Found at i:716709 original size:35 final size:36
Alignment explanation
Indices: 716625--716710 Score: 104
Period size: 37 Copynumber: 2.4 Consensus size: 36
716615 CAACAACATC
* *
716625 TACCATACTTTG-AAAAACATTTTTCAAAGAAGCATT
1 TACCAAACTTTGAAAAAACATTTTTCAAAGAAG-AGT
**
716661 TACCAAACTTTGAAAAAACATTTTTCAAAGTTG-GT
1 TACCAAACTTTGAAAAAACATTTTTCAAAGAAGAGT
*
716696 TGCCAAACTTTGAAA
1 TACCAAACTTTGAAA
716711 CTAACTTTTA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
35 15 0.34
36 11 0.25
37 18 0.41
ACGTcount: A:0.41, C:0.16, G:0.10, T:0.33
Consensus pattern (36 bp):
TACCAAACTTTGAAAAAACATTTTTCAAAGAAGAGT
Found at i:722736 original size:20 final size:20
Alignment explanation
Indices: 722711--722749 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
722701 ATTGAATTTA
* *
722711 TTCAAAATTTATTCAAAGTT
1 TTCAAAAATAATTCAAAGTT
722731 TTCAAAAATAATTCAAAGT
1 TTCAAAAATAATTCAAAGT
722750 CAATTTAAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.10, G:0.05, T:0.38
Consensus pattern (20 bp):
TTCAAAAATAATTCAAAGTT
Found at i:725582 original size:15 final size:16
Alignment explanation
Indices: 725548--725585 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
725538 AATTTATATC
*
725548 AATTTTTCAAATGCTTT
1 AATTTTACAAAT-CTTT
725565 AATTTTACAAAT-TTT
1 AATTTTACAAATCTTT
725580 AATTTT
1 AATTTT
725586 TGACCTAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 9 0.45
17 11 0.55
ACGTcount: A:0.34, C:0.08, G:0.03, T:0.55
Consensus pattern (16 bp):
AATTTTACAAATCTTT
Found at i:735385 original size:21 final size:21
Alignment explanation
Indices: 735359--735402 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
735349 GTAAAATACG
* *
735359 GTATGAATAGTATCGTGAACA
1 GTATGAACAATATCGTGAACA
735380 GTATGAACAATATCGTGAACA
1 GTATGAACAATATCGTGAACA
735401 GT
1 GT
735403 GCTACAATGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.39, C:0.11, G:0.23, T:0.27
Consensus pattern (21 bp):
GTATGAACAATATCGTGAACA
Found at i:735504 original size:21 final size:21
Alignment explanation
Indices: 735463--735506 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
735453 AAGCAAAATT
* *
735463 GTGCATCGATGTACTGCTACA
1 GTGCATCGATGCACTGATACA
*
735484 GTGCATCGATGCAGTGATACA
1 GTGCATCGATGCACTGATACA
735505 GT
1 GT
735507 ACTGCTACAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (21 bp):
GTGCATCGATGCACTGATACA
Found at i:735689 original size:7 final size:7
Alignment explanation
Indices: 735677--735791 Score: 216
Period size: 7 Copynumber: 16.7 Consensus size: 7
735667 TCAAAATACT
735677 TGGGGTC
1 TGGGGTC
735684 TGGGGTC
1 TGGGGTC
735691 TGGGGTC
1 TGGGGTC
735698 TGGGGTC
1 TGGGGTC
735705 TGGGGTC
1 TGGGGTC
735712 TGGGGTC
1 TGGGGTC
735719 TGGGGTC
1 TGGGGTC
735726 T-GGGTC
1 TGGGGTC
735732 TGGGGTC
1 TGGGGTC
735739 TGGGGTC
1 TGGGGTC
735746 TGGGGTC
1 TGGGGTC
735753 TGGGGTC
1 TGGGGTC
735760 TGGGGTC
1 TGGGGTC
735767 TGGGGTC
1 TGGGGTC
735774 T-GGGTC
1 TGGGGTC
735780 TGGGGTC
1 TGGGGTC
735787 TGGGG
1 TGGGG
735792 CTTAGGGCTT
Statistics
Matches: 106, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
6 12 0.11
7 94 0.89
ACGTcount: A:0.00, C:0.14, G:0.57, T:0.29
Consensus pattern (7 bp):
TGGGGTC
Found at i:735750 original size:48 final size:48
Alignment explanation
Indices: 735679--735791 Score: 226
Period size: 48 Copynumber: 2.4 Consensus size: 48
735669 AAAATACTTG
735679 GGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCT
1 GGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCT
735727 GGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCT
1 GGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCT
735775 GGGTCTGGGGTCTGGGG
1 GGGTCTGGGGTCTGGGG
735792 CTTAGGGCTT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 65 1.00
ACGTcount: A:0.00, C:0.14, G:0.58, T:0.28
Consensus pattern (48 bp):
GGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCT
Found at i:738886 original size:7 final size:7
Alignment explanation
Indices: 735787--738868 Score: 3367
Period size: 7 Copynumber: 449.7 Consensus size: 7
735777 GTCTGGGGTC
735787 TGGGGCT
1 TGGGGCT
*
735794 TAGGGCT
1 TGGGGCT
*
735801 TAGGGCT
1 TGGGGCT
*
735808 TAGGGCT
1 TGGGGCT
*
735815 TAGGGCT
1 TGGGGCT
*
735822 TAGGGCT
1 TGGGGCT
*
735829 TAGGGCT
1 TGGGGCT
*
735836 TAGGGCT
1 TGGGGCT
*
735843 T-AGGCT
1 TGGGGCT
*
735849 TAGGGCT
1 TGGGGCT
*
735856 TAGGGCT
1 TGGGGCT
*
735863 TAGGGCT
1 TGGGGCT
*
735870 TAGGGCT
1 TGGGGCT
*
735877 TAGGGCT
1 TGGGGCT
*
735884 TAGGGCT
1 TGGGGCT
*
735891 TAGGGCT
1 TGGGGCT
*
735898 TAGGGCT
1 TGGGGCT
*
735905 TAGGGCT
1 TGGGGCT
*
735912 TAGGGCT
1 TGGGGCT
*
735919 TAGGGCT
1 TGGGGCT
*
735926 TAGGGCT
1 TGGGGCT
*
735933 TAGGGCT
1 TGGGGCT
*
735940 T-AGGCT
1 TGGGGCT
*
735946 TAGGGCT
1 TGGGGCT
*
735953 TAGGGCT
1 TGGGGCT
*
735960 TAGGGCT
1 TGGGGCT
*
735967 TAGGGCT
1 TGGGGCT
*
735974 TAGGGCT
1 TGGGGCT
*
735981 TAGGGCT
1 TGGGGCT
*
735988 TAGGGCT
1 TGGGGCT
*
735995 TAGGGCT
1 TGGGGCT
*
736002 TAGGGCT
1 TGGGGCT
*
736009 TAGGGCT
1 TGGGGCT
*
736016 TAGGGCT
1 TGGGGCT
*
736023 TAGGGCT
1 TGGGGCT
*
736030 TAGGGCT
1 TGGGGCT
*
736037 TAGGGCT
1 TGGGGCT
*
736044 TAGGGCT
1 TGGGGCT
*
736051 TAGGGCT
1 TGGGGCT
*
736058 TAGGGCT
1 TGGGGCT
*
736065 TAGGGCT
1 TGGGGCT
*
736072 TAGGGCT
1 TGGGGCT
*
736079 TAGGGCT
1 TGGGGCT
*
736086 TAGGGCT
1 TGGGGCT
*
736093 TAGGGCT
1 TGGGGCT
*
736100 TAGGGCT
1 TGGGGCT
*
736107 TAGGGCT
1 TGGGGCT
736114 TAGGGGGCT
1 T--GGGGCT
*
736123 TAGGGCT
1 TGGGGCT
*
736130 TAGGGCT
1 TGGGGCT
*
736137 T-AGGCT
1 TGGGGCT
*
736143 TAGGGCT
1 TGGGGCT
*
736150 TAGGGCT
1 TGGGGCT
*
736157 TAGGGCT
1 TGGGGCT
*
736164 TAGGGCT
1 TGGGGCT
*
736171 T-AGGCT
1 TGGGGCT
*
736177 TAGGGCT
1 TGGGGCT
*
736184 T-AGGCT
1 TGGGGCT
*
736190 TAGGGCT
1 TGGGGCT
*
736197 TAGGGCT
1 TGGGGCT
*
736204 TAGGGCT
1 TGGGGCT
*
736211 TAGGGCT
1 TGGGGCT
*
736218 TAGGGCT
1 TGGGGCT
*
736225 TAGGGCT
1 TGGGGCT
*
736232 T-AGGCT
1 TGGGGCT
*
736238 TAGGGCT
1 TGGGGCT
*
736245 TAGGGCT
1 TGGGGCT
*
736252 TAGGGCT
1 TGGGGCT
*
736259 TAGGGCT
1 TGGGGCT
*
736266 TAGGGCT
1 TGGGGCT
*
736273 TAGGGCT
1 TGGGGCT
*
736280 T-AGGCT
1 TGGGGCT
*
736286 TAGGGCT
1 TGGGGCT
*
736293 TAGGGCT
1 TGGGGCT
*
736300 TAGGGCT
1 TGGGGCT
*
736307 T-AGGCT
1 TGGGGCT
*
736313 TAGGGCT
1 TGGGGCT
*
736320 TAGGGCT
1 TGGGGCT
*
736327 TAGGGCT
1 TGGGGCT
*
736334 TAGGGCT
1 TGGGGCT
*
736341 T-AGGCT
1 TGGGGCT
*
736347 TAGGGCT
1 TGGGGCT
*
736354 TAGGGCT
1 TGGGGCT
*
736361 TAGGGCT
1 TGGGGCT
*
736368 TAGGGCT
1 TGGGGCT
*
736375 TAGGGCT
1 TGGGGCT
*
736382 TAGGGCT
1 TGGGGCT
*
736389 TAGGGCT
1 TGGGGCT
*
736396 TAGGGCT
1 TGGGGCT
*
736403 TAGGGCT
1 TGGGGCT
*
736410 TAGGGCT
1 TGGGGCT
*
736417 T-AGGCT
1 TGGGGCT
*
736423 TAGGGCT
1 TGGGGCT
*
736430 TAGGGCT
1 TGGGGCT
*
736437 TAGGGCT
1 TGGGGCT
*
736444 TAGGGCT
1 TGGGGCT
*
736451 TAGGGCT
1 TGGGGCT
*
736458 TAGGGCT
1 TGGGGCT
*
736465 TAGGGCT
1 TGGGGCT
*
736472 TAGGGCT
1 TGGGGCT
*
736479 TAGGGCT
1 TGGGGCT
*
736486 T-AGGCT
1 TGGGGCT
*
736492 TAGGGCT
1 TGGGGCT
*
736499 TAGGGCT
1 TGGGGCT
*
736506 TAGGGCT
1 TGGGGCT
*
736513 TAGGGCT
1 TGGGGCT
*
736520 TAGGGCT
1 TGGGGCT
*
736527 TAGGGCT
1 TGGGGCT
*
736534 TAGGGCT
1 TGGGGCT
*
736541 TAGGGCT
1 TGGGGCT
*
736548 TAGGGCT
1 TGGGGCT
*
736555 TAGGGCT
1 TGGGGCT
*
736562 TAGGGCT
1 TGGGGCT
*
736569 TAGGGCT
1 TGGGGCT
*
736576 TAGGGCT
1 TGGGGCT
*
736583 TAGGGCT
1 TGGGGCT
*
736590 TAGGGCT
1 TGGGGCT
*
736597 TAGGGCT
1 TGGGGCT
*
736604 TAGGGCT
1 TGGGGCT
*
736611 TAGGGCT
1 TGGGGCT
*
736618 TAGGGCT
1 TGGGGCT
*
736625 TAGGGCT
1 TGGGGCT
*
736632 TAGGGCT
1 TGGGGCT
*
736639 TAGGGCT
1 TGGGGCT
*
736646 TAGGGCT
1 TGGGGCT
*
736653 TAGGGCT
1 TGGGGCT
*
736660 TAGGGCT
1 TGGGGCT
736667 TAGTTAGGGCT
1 T-G---GGGCT
*
736678 TAGGGCT
1 TGGGGCT
*
736685 TAGGGCT
1 TGGGGCT
*
736692 TAGGGCT
1 TGGGGCT
*
736699 TAGGGCT
1 TGGGGCT
*
736706 TAGGGCT
1 TGGGGCT
*
736713 TAGGGCT
1 TGGGGCT
*
736720 TAGGGCT
1 TGGGGCT
*
736727 TAGGGCT
1 TGGGGCT
*
736734 TAGGGCT
1 TGGGGCT
*
736741 TAGGGCT
1 TGGGGCT
*
736748 TAGGGCT
1 TGGGGCT
*
736755 TAGGGCT
1 TGGGGCT
*
736762 TAGGGCT
1 TGGGGCT
*
736769 T-AGGCT
1 TGGGGCT
*
736775 TAGGGCT
1 TGGGGCT
*
736782 TAGGGCT
1 TGGGGCT
*
736789 TAGGGCT
1 TGGGGCT
*
736796 TAGGGCT
1 TGGGGCT
*
736803 TAGGGCT
1 TGGGGCT
*
736810 TAGGGCT
1 TGGGGCT
*
736817 TAGGGCT
1 TGGGGCT
*
736824 TAGGGCT
1 TGGGGCT
*
736831 TAGGGCT
1 TGGGGCT
*
736838 TAGGGCT
1 TGGGGCT
*
736845 TAGGGCT
1 TGGGGCT
*
736852 TAGGGCT
1 TGGGGCT
*
736859 TAGGGCT
1 TGGGGCT
*
736866 TAGGGCT
1 TGGGGCT
*
736873 TAGGGCT
1 TGGGGCT
*
736880 TAGGGCT
1 TGGGGCT
*
736887 TAGGGCT
1 TGGGGCT
*
736894 TAGGGCT
1 TGGGGCT
*
736901 TAGGGCT
1 TGGGGCT
*
736908 TAGGGCT
1 TGGGGCT
*
736915 TAGGGCT
1 TGGGGCT
*
736922 T-AGGCT
1 TGGGGCT
*
736928 TAGGGCT
1 TGGGGCT
*
736935 TAGGGCT
1 TGGGGCT
*
736942 TAGGGCT
1 TGGGGCT
*
736949 T-AGGCT
1 TGGGGCT
*
736955 TAGGGCT
1 TGGGGCT
*
736962 TAGGGCT
1 TGGGGCT
*
736969 TAGGGCT
1 TGGGGCT
*
736976 TAGGGCT
1 TGGGGCT
*
736983 TAGGGCT
1 TGGGGCT
*
736990 TAGGGCT
1 TGGGGCT
*
736997 TAGGGCT
1 TGGGGCT
*
737004 TAGGGCT
1 TGGGGCT
*
737011 TAGGGCT
1 TGGGGCT
*
737018 TAGGGCT
1 TGGGGCT
*
737025 TAGGGCT
1 TGGGGCT
*
737032 TAGGGCT
1 TGGGGCT
*
737039 TAGGGCT
1 TGGGGCT
*
737046 T-AGGCT
1 TGGGGCT
*
737052 TAGGGCT
1 TGGGGCT
*
737059 TAGGGCT
1 TGGGGCT
*
737066 TAGGGCT
1 TGGGGCT
*
737073 TAGGGCT
1 TGGGGCT
*
737080 TAGGGCT
1 TGGGGCT
*
737087 TAGGGCT
1 TGGGGCT
*
737094 TAGGGCT
1 TGGGGCT
*
737101 TAGGGCT
1 TGGGGCT
*
737108 TAGGGCT
1 TGGGGCT
*
737115 T-AGGCT
1 TGGGGCT
*
737121 TAGGGCT
1 TGGGGCT
*
737128 TAGGGCT
1 TGGGGCT
*
737135 TAGGGCT
1 TGGGGCT
*
737142 TAGGGCT
1 TGGGGCT
*
737149 TAGGGCT
1 TGGGGCT
*
737156 TAGGGCT
1 TGGGGCT
737163 T-GGGCT
1 TGGGGCT
737169 TGGGGCT
1 TGGGGCT
737176 TGGGGCT
1 TGGGGCT
737183 T-GGGCT
1 TGGGGCT
737189 TGGGGCT
1 TGGGGCT
737196 TGGGGCT
1 TGGGGCT
737203 TGGGGCT
1 TGGGGCT
737210 T-GGGC-
1 TGGGGCT
737215 TGGGGCT
1 TGGGGCT
737222 TGGGGCT
1 TGGGGCT
737229 TGGGGCT
1 TGGGGCT
737236 TGGGGCT
1 TGGGGCT
737243 TGGGGCT
1 TGGGGCT
*
737250 TGGGGCG
1 TGGGGCT
737257 TGGGGCGT
1 TGGGGC-T
737265 T-GGGC-
1 TGGGGCT
* *
737270 -GTGGCG
1 TGGGGCT
737276 T-GGGCT
1 TGGGGCT
*
737282 TGGGGCG
1 TGGGGCT
737289 T-GGGCT
1 TGGGGCT
*
737295 TGGGGCG
1 TGGGGCT
737302 TGGGGCT
1 TGGGGCT
*
737309 TGGGGCG
1 TGGGGCT
737316 TGGGGCT
1 TGGGGCT
737323 TGGGGCT
1 TGGGGCT
737330 TGGGGCT
1 TGGGGCT
737337 TGGGGCT
1 TGGGGCT
737344 TGGGGCT
1 TGGGGCT
737351 TGGGGCT
1 TGGGGCT
737358 TGGGGCT
1 TGGGGCT
737365 TGGGGCT
1 TGGGGCT
*
737372 TGGGGCG
1 TGGGGCT
737379 TGGGGCT
1 TGGGGCT
*
737386 TGGGGCG
1 TGGGGCT
737393 TGGGGCT
1 TGGGGCT
*
737400 TGGGGCG
1 TGGGGCT
737407 TGGGGCT
1 TGGGGCT
737414 T-GGGC-
1 TGGGGCT
*
737419 GGGGGCT
1 TGGGGCT
*
737426 TGGGGCG
1 TGGGGCT
737433 T-GGGCT
1 TGGGGCT
737439 TGGGGCT
1 TGGGGCT
737446 T-GGGCT
1 TGGGGCT
737452 TGGGGCT
1 TGGGGCT
737459 TGGGGCT
1 TGGGGCT
737466 T-GGGCT
1 TGGGGCT
737472 TGGGGCT
1 TGGGGCT
737479 TGGGGCT
1 TGGGGCT
737486 TGGGGCT
1 TGGGGCT
737493 TGGGGCT
1 TGGGGCT
737500 TGGGGCT
1 TGGGGCT
737507 TGGGGCT
1 TGGGGCT
737514 TGGGGCT
1 TGGGGCT
737521 TGGGGCT
1 TGGGGCT
737528 TGGGGCT
1 TGGGGCT
*
737535 TGGGGAT
1 TGGGGCT
737542 TGGGGCT
1 TGGGGCT
737549 TGGGG-T
1 TGGGGCT
737555 TGGGGCT
1 TGGGGCT
737562 T-GGGCT
1 TGGGGCT
737568 TGGGGCT
1 TGGGGCT
737575 TGGGGCT
1 TGGGGCT
737582 T-GGGCT
1 TGGGGCT
737588 TGGGGCT
1 TGGGGCT
737595 TGGGGCT
1 TGGGGCT
737602 TGGGGCT
1 TGGGGCT
737609 TGGGGCT
1 TGGGGCT
737616 T-GGGCT
1 TGGGGCT
737622 TGGGGCT
1 TGGGGCT
737629 TGGGGCT
1 TGGGGCT
737636 TGGGG-T
1 TGGGGCT
737642 TGGGGCT
1 TGGGGCT
737649 TGGGGCT
1 TGGGGCT
737656 TGGGGCT
1 TGGGGCT
737663 T-GGGCT
1 TGGGGCT
737669 T-GGGCT
1 TGGGGCT
737675 TGGGGCT
1 TGGGGCT
737682 TGGGGCT
1 TGGGGCT
737689 TGGGGCT
1 TGGGGCT
737696 TGGGGCT
1 TGGGGCT
737703 TGGGGCT
1 TGGGGCT
737710 TGGGGCT
1 TGGGGCT
737717 TGGGGCT
1 TGGGGCT
737724 TGGGGCT
1 TGGGGCT
737731 TGGGGCT
1 TGGGGCT
737738 TGGGGCT
1 TGGGGCT
737745 TGGGGCT
1 TGGGGCT
737752 TGGGGCT
1 TGGGGCT
737759 TGGGGCT
1 TGGGGCT
737766 TGGGGCT
1 TGGGGCT
737773 TGGGGCT
1 TGGGGCT
737780 TGGGGCT
1 TGGGGCT
737787 TGGGGCTT
1 TGGGGC-T
737795 TGGGGCT
1 TGGGGCT
737802 T-GGGCT
1 TGGGGCT
737808 TGGGGCT
1 TGGGGCT
737815 TGGGGCT
1 TGGGGCT
737822 TGGGGCT
1 TGGGGCT
737829 TGGGGCT
1 TGGGGCT
737836 TGGGGCT
1 TGGGGCT
737843 TGGGGCT
1 TGGGGCT
737850 T-GGGC-
1 TGGGGCT
*
737855 GGGGGC-
1 TGGGGCT
737861 TGGGGCT
1 TGGGGCT
*
737868 TGGGGCG
1 TGGGGCT
737875 TGGGGCT
1 TGGGGCT
*
737882 TGGGGCG
1 TGGGGCT
737889 TGGGGCT
1 TGGGGCT
*
737896 TGGGGCG
1 TGGGGCT
737903 TGGGGCT
1 TGGGGCT
737910 TGGGGCT
1 TGGGGCT
737917 TGGGGCT
1 TGGGGCT
737924 TGGGGCT
1 TGGGGCT
737931 TGGGGCT
1 TGGGGCT
737938 T-GGGCT
1 TGGGGCT
737944 TGGGGCT
1 TGGGGCT
737951 TGGGGCT
1 TGGGGCT
737958 TGGGGCT
1 TGGGGCT
*
737965 T-GGGCG
1 TGGGGCT
737971 TGGGGCT
1 TGGGGCT
*
737978 TGGGGCG
1 TGGGGCT
737985 TGGGGCT
1 TGGGGCT
*
737992 T-GGGCG
1 TGGGGCT
737998 TGGGGCT
1 TGGGGCT
738005 TGGGGC-
1 TGGGGCT
738011 TGGGGCT
1 TGGGGCT
738018 TGGGGCT
1 TGGGGCT
738025 TGGGGCT
1 TGGGGCT
738032 TGGGGCT
1 TGGGGCT
738039 TGGGGCT
1 TGGGGCT
738046 TGGGGCT
1 TGGGGCT
738053 TGGGGCT
1 TGGGGCT
738060 TGGGGCT
1 TGGGGCT
738067 TGGGGCT
1 TGGGGCT
738074 TGGGGCT
1 TGGGGCT
738081 TGGGGCT
1 TGGGGCT
738088 TGGGGCT
1 TGGGGCT
738095 TGGGGCT
1 TGGGGCT
738102 T-GGGCT
1 TGGGGCT
738108 T--GGCT
1 TGGGGCT
738113 T-GGGCT
1 TGGGGCT
738119 TGGGGCT
1 TGGGGCT
738126 TGGGGCT
1 TGGGGCT
738133 TGGGGCT
1 TGGGGCT
738140 T-GGGCT
1 TGGGGCT
738146 TGGGGCT
1 TGGGGCT
738153 TGGGGCT
1 TGGGGCT
738160 TGGGGCT
1 TGGGGCT
738167 TGGGGCT
1 TGGGGCT
738174 TGGGGCT
1 TGGGGCT
738181 T-GGGCT
1 TGGGGCT
738187 TGGGGCT
1 TGGGGCT
738194 TGGGGCT
1 TGGGGCT
*
738201 GGGGGCT
1 TGGGGCT
738208 TGGGGCT
1 TGGGGCT
*
738215 TTGGGCT
1 TGGGGCT
738222 TGGGGGGCT
1 T--GGGGCT
738231 TGGGGCT
1 TGGGGCT
738238 TGGGGCT
1 TGGGGCT
738245 T-GGGCT
1 TGGGGCT
738251 TGGGGCT
1 TGGGGCT
738258 TGGGGCT
1 TGGGGCT
738265 T-GGGCT
1 TGGGGCT
738271 TGGGGCT
1 TGGGGCT
738278 TGGGGCT
1 TGGGGCT
738285 TGGGGCT
1 TGGGGCT
738292 TGGGGCT
1 TGGGGCT
738299 TGGGGCT
1 TGGGGCT
**
738306 TGGGGAG
1 TGGGGCT
738313 TGGGGCT
1 TGGGGCT
*
738320 TGTGGG-G
1 TG-GGGCT
*
738327 TGGGGCG
1 TGGGGCT
738334 T-GGGCT
1 TGGGGCT
*
738340 TGGGGCG
1 TGGGGCT
738347 TGGGGCT
1 TGGGGCT
*
738354 TGGGGCG
1 TGGGGCT
738361 T-GGGCT
1 TGGGGCT
*
738367 TGGGGCG
1 TGGGGCT
738374 TGGGGCT
1 TGGGGCT
* *
738381 TTGGGCG
1 TGGGGCT
738388 TGGGGCT
1 TGGGGCT
738395 TGGGG--
1 TGGGGCT
738400 T-GGGCT
1 TGGGGCT
738406 TGGGGCT
1 TGGGGCT
738413 TGGGGCT
1 TGGGGCT
738420 TGGGGCT
1 TGGGGCT
738427 TGGGGCT
1 TGGGGCT
738434 TGGGGCT
1 TGGGGCT
738441 T-GGGCT
1 TGGGGCT
*
738447 T-GGGCG
1 TGGGGCT
738453 TGGGGCT
1 TGGGGCT
*
738460 TGGGGCG
1 TGGGGCT
738467 T-GGGCT
1 TGGGGCT
738473 TGGGG--
1 TGGGGCT
738478 TGGGGCT
1 TGGGGCT
*
738485 TGGGGCG
1 TGGGGCT
738492 TGGGGCT
1 TGGGGCT
738499 TGGGGC-
1 TGGGGCT
738505 TGGGGCT
1 TGGGGCT
738512 TGGGGCT
1 TGGGGCT
738519 TGGGGCT
1 TGGGGCT
738526 T-GGGCT
1 TGGGGCT
738532 TGGGGCT
1 TGGGGCT
738539 TGGGGCT
1 TGGGGCT
738546 T-GGGCT
1 TGGGGCT
738552 TGGGGCT
1 TGGGGCT
738559 TGGGGCT
1 TGGGGCT
738566 TGGGGCT
1 TGGGGCT
738573 TGGGGCT
1 TGGGGCT
738580 TGGGGCT
1 TGGGGCT
738587 TGGGGCT
1 TGGGGCT
738594 TGGGGCT
1 TGGGGCT
738601 TGGGGCT
1 TGGGGCT
738608 TGGGGCT
1 TGGGGCT
738615 TGGGGCT
1 TGGGGCT
738622 TGGGGCT
1 TGGGGCT
738629 TGGGGCT
1 TGGGGCT
738636 TGGGGCT
1 TGGGGCT
738643 TGGGGCTT
1 TGGGGC-T
738651 TGGGGCT
1 TGGGGCT
738658 TGGGGCT
1 TGGGGCT
738665 T-GGGCT
1 TGGGGCT
738671 TGGGGCT
1 TGGGGCT
738678 TGGGGCT
1 TGGGGCT
738685 T-GGGCT
1 TGGGGCT
738691 TGGGGCT
1 TGGGGCT
738698 TGGGGCT
1 TGGGGCT
738705 TGGGGCT
1 TGGGGCT
738712 TGGGGCT
1 TGGGGCT
738719 T-GGGCT
1 TGGGGCT
*
738725 TGGGGCG
1 TGGGGCT
738732 TGGGGC-
1 TGGGGCT
738738 TGGGGCT
1 TGGGGCT
738745 TGGGGCT
1 TGGGGCT
738752 TGGGGCT
1 TGGGGCT
738759 TGGGG--
1 TGGGGCT
738764 -GGGGCT
1 TGGGGCT
738770 TGCGTGGGC-
1 T--G-GGGCT
738779 TGGGG-T
1 TGGGGCT
738785 T-GGGCT
1 TGGGGCT
738791 TGGGGCT
1 TGGGGCT
*
738798 TGTGGCT
1 TGGGGCT
738805 T-GGGCT
1 TGGGGCT
738811 TGGGGGCT
1 T-GGGGCT
738819 TGGGGCT
1 TGGGGCT
738826 TGGGGCT
1 TGGGGCT
738833 TGGGGCT
1 TGGGGCT
738840 T-GGGC-
1 TGGGGCT
738845 T-GGGCT
1 TGGGGCT
*
738851 TGGGGCG
1 TGGGGCT
738858 T-GGGCT
1 TGGGGCT
738864 TGGGG
1 TGGGG
738869 GGGCTTGGGG
Statistics
Matches: 2878, Mismatches: 105, Indels: 184
0.91 0.03 0.06
Matches are distributed among these distances:
4 7 0.00
5 23 0.01
6 345 0.12
7 2455 0.85
8 24 0.01
9 14 0.00
10 4 0.00
11 6 0.00
ACGTcount: A:0.06, C:0.14, G:0.51, T:0.28
Consensus pattern (7 bp):
TGGGGCT
Done.