genome.fa.s8055.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008055.1 Hibiscus syriacus cultivar Beakdansim tig00110550_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146341

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4957--4986	8	3.9	8	91	8	53	0	10	0	90	0.47
4956--4986	15	2.1	15	93	0	53	0	12	0	87	0.55
7934--7980	21	2.4	19	86	13	76	19	27	6	46	1.74
7940--7987	21	2.3	21	100	0	96	18	29	10	41	1.84
8440--8508	19	3.6	18	71	21	52	49	1	1	47	1.19
8475--8547	23	3.1	23	80	5	67	52	4	0	43	1.20
8836--8870	14	2.5	14	95	0	61	34	20	11	34	1.88
9349--9376	13	2.2	13	100	0	56	17	14	21	46	1.84
11765--11838	29	2.5	30	80	4	87	39	20	8	32	1.82
11869--11939	18	4.0	18	88	1	108	14	19	47	18	1.82
18978--19046	29	2.3	30	82	5	95	39	24	5	30	1.79
18993--19074	29	2.8	29	83	3	85	42	20	7	29	1.79
24772--24829	29	2.0	29	100	0	116	34	10	31	24	1.89
26240--26649	121	3.4	122	85	4	478	47	6	14	31	1.69
30177--30221	22	2.0	23	82	4	56	55	0	11	33	1.35
32194--32313	42	2.9	42	98	0	231	15	20	19	44	1.87
32485--32547	23	2.6	24	78	19	60	52	0	0	47	1.00
32579--32676	32	3.2	28	75	22	83	43	1	2	53	1.19
32842--32911	20	3.5	20	94	0	122	35	12	10	41	1.77
32842--32920	40	2.0	40	89	0	122	35	13	8	41	1.76
32894--32975	15	5.5	15	88	2	121	35	19	7	37	1.80
32894--32975	30	2.8	30	94	1	139	35	19	7	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32894--32980	45	2.0	44	93	2	147	33	19	6	40	1.78
33406--33881	161	3.0	162	89	2	705	25	17	19	37	1.94
37486--37542	28	2.0	28	82	0	69	36	19	14	29	1.91
40461--40490	16	1.9	15	93	6	51	76	0	0	23	0.78
40658--42886	114	19.6	114	78	5	2019	26	14	15	43	1.85
41876--41925	24	2.1	24	88	0	73	26	14	20	40	1.90
41218--42594	690	2.0	699	83	4	1753	25	14	15	43	1.86
41914--42814	340	2.7	339	83	5	1095	26	15	15	43	1.86
41912--42886	227	4.4	224	81	6	1009	26	14	14	43	1.85
43157--43189	17	1.9	17	93	0	57	39	9	6	45	1.61
47283--47322	21	1.9	21	94	0	71	60	5	5	30	1.40
51131--51167	19	1.9	19	88	0	56	24	35	27	13	1.93
52639--52680	15	2.7	15	83	16	59	21	0	26	52	1.47
52641--52675	17	2.1	17	94	5	63	17	0	22	60	1.37
66966--67018	14	3.7	14	80	10	54	15	22	0	62	1.32
72377--72411	16	2.2	16	100	0	70	31	11	5	51	1.61
76500--76529	15	2.0	15	93	0	51	26	10	13	50	1.73
79421--79462	21	2.0	21	95	0	75	30	14	26	28	1.95
79995--80283	6	49.5	6	98	1	522	0	16	50	32	1.46
80406--80442	19	1.9	19	88	0	56	45	8	18	27	1.77
80455--80498	21	2.1	21	86	0	61	34	29	15	20	1.94
81442--81475	14	2.4	14	95	0	59	52	5	11	29	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82691--82752	32	1.9	32	87	6	90	27	14	24	33	1.94
82786--82958	44	4.0	44	87	1	251	30	16	23	28	1.96
91362--91425	32	1.9	34	84	12	89	57	17	10	14	1.64
91932--92048	41	2.9	40	77	11	112	26	22	16	35	1.95
95477--95514	9	4.3	9	83	6	51	60	0	0	39	0.97
96240--96272	15	2.2	15	94	0	57	30	0	0	69	0.88
96226--96277	22	2.4	22	80	6	61	30	1	0	67	1.02
96271--96365	39	2.4	39	85	5	120	35	14	1	48	1.51
98021--98053	17	1.9	17	88	11	50	39	0	0	60	0.97
101344--101379	18	2.1	16	90	10	54	16	0	41	41	1.48
102361--102398	20	1.9	20	88	0	58	71	5	2	21	1.19
105207--105242	17	2.1	17	89	0	54	16	22	38	22	1.93
105288--105330	12	3.6	12	93	0	68	60	9	2	27	1.40
105887--105976	38	2.4	38	88	0	126	42	15	14	27	1.86
106608--106708	42	2.4	42	86	1	132	34	20	19	24	1.96
106123--107085	261	3.7	259	89	1	1403	32	16	16	34	1.91
109815--109853	16	2.4	17	86	4	53	0	20	0	79	0.73
115990--116037	20	2.4	20	75	6	53	22	37	12	27	1.90
117277--117955	107	6.4	105	88	7	893	26	28	15	29	1.96
117277--117957	53	12.8	54	87	6	889	27	28	14	29	1.96
117944--118749	153	5.2	155	84	8	910	23	26	18	31	1.97
117955--118746	51	15.3	51	82	7	807	23	26	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118947--119044	33	2.8	35	82	11	121	22	19	20	37	1.94
127227--127274	20	2.4	20	75	6	53	22	37	12	27	1.90
144012--144053	22	1.9	22	85	0	57	54	7	0	38	1.28

Tables:   1

The End!