Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008056.1 Hibiscus syriacus cultivar Beakdansim tig00110551_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2370532
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 10 of 13
Found at i:1696715 original size:81 final size:81
Alignment explanation
Indices: 1696557--1697291 Score: 1015
Period size: 81 Copynumber: 9.1 Consensus size: 81
1696547 CTGTTTTAAA
* * * * *
1696557 TAAAATATTAATTGCCTAGCTGTGCATTTGACATAAAGATGTCAGTTATG-CAGTTAGATGAAAG
1 TAAAAGATTAATTGCCTAGATGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
* *
1696621 GCTAAATGTCTTTGAG
66 GTTAAATGCCTTTGAG
* * * * * *
1696637 TAAAAGATTAGTTGCGTAGATGTGCATTTGATAGAAATGTGTCAATTACGCTAGTTAGATGAAAG
1 TAAAAGATTAATTGCCTAGATGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
1696702 GTTAAATGCCTTTGAG
66 GTTAAATGCCTTTGAG
* *
1696718 TAAAAGATTAATTGTCTAGATGTGCATTTGACGGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
1 TAAAAGATTAATTGCCTAGATGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
*
1696783 GTTAAATGTCTTTGAG
66 GTTAAATGCCTTTGAG
* * *
1696799 TAAAAGATTAATTGCCTAGATGTGCATTTGAAAGAAAGGTATCAATTATGCAAGTTAGATGAAAG
1 TAAAAGATTAATTGCCTAGATGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
1696864 GTTAAATGCCTTTGAG
66 GTTAAATGCCTTTGAG
* * **
1696880 TAAAAGATTAATTGCCTAGCTGTGCATTTGATAGAAATATGTCAATTATGCCAGTTAGATGAAAG
1 TAAAAGATTAATTGCCTAGATGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
1696945 GTTAAATGCCTTTGAG
66 GTTAAATGCCTTTGAG
* * * *
1696961 TAAAAGATTAATTGCCTAGTTATGCATTTGACAGAAAGGTTTCAATTATGCCAGTTAAATGAAAG
1 TAAAAGATTAATTGCCTAGATGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
1697026 GTTAAATGCCTTTGAG
66 GTTAAATGCCTTTGAG
* * *
1697042 TAAAAGATTAATTGCCTAGTTGTGCATTTGACAAAAATGTGTCAATTATGCCAGTTAGATGAAAG
1 TAAAAGATTAATTGCCTAGATGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
*
1697107 ATTAAATGCCTTTGAG
66 GTTAAATGCCTTTGAG
* ** * *
1697123 TAAAAGATTAATTGCCTAGTTGTGCATTTGGTAGAAAGGTGTCAATCATGCCAGTTAAATGAAAG
1 TAAAAGATTAATTGCCTAGATGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
*
1697188 GCTAAATGCCTTTGAG
66 GTTAAATGCCTTTGAG
* * * ** * * * *
1697204 TTAAAGATTAGA-TGCCTAGCTATGCATTTGGTAGAAGGGTGTTAATCATGCAAGTTAGATGAAA
1 TAAAAGATTA-ATTGCCTAGATGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAA
* *
1697268 GGCTAAATGCCTTTGGG
65 GGTTAAATGCCTTTGAG
1697285 TAAAAGA
1 TAAAAGA
1697292 CTAAATGTTT
Statistics
Matches: 589, Mismatches: 64, Indels: 3
0.90 0.10 0.00
Matches are distributed among these distances:
80 40 0.07
81 548 0.93
82 1 0.00
ACGTcount: A:0.35, C:0.10, G:0.23, T:0.32
Consensus pattern (81 bp):
TAAAAGATTAATTGCCTAGATGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAG
GTTAAATGCCTTTGAG
Found at i:1701118 original size:76 final size:77
Alignment explanation
Indices: 1700969--1701168 Score: 280
Period size: 76 Copynumber: 2.6 Consensus size: 77
1700959 AATTACAGAT
* **
1700969 TGCTCAGAGGGAACCGATTCCCCCCCATAGGAGGAACCGATT-CCCCCTAAATGGTTTTGGCCCC
1 TGCTCGGAGGGAACCGATT-CCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGTTTTGGCCCC
*
1701033 GAGATTTCCAAAA
65 GAGAATTCCAAAA
*
1701046 TGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGTTTT-GCTCCG
1 TGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGTTTTGGCCCCG
**
1701110 AGAATTCCAGTA
66 AGAATTCCAAAA
* * *
1701122 TGCTCGGAGGGAACCGATCCCCCCCA-AGGGGGTACCGATTCCCCCCT
1 TGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCT
1701169 TGTACAACGG
Statistics
Matches: 112, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
75 19 0.17
76 61 0.54
77 32 0.29
ACGTcount: A:0.23, C:0.34, G:0.23, T:0.20
Consensus pattern (77 bp):
TGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGTTTTGGCCCCG
AGAATTCCAAAA
Found at i:1706670 original size:19 final size:19
Alignment explanation
Indices: 1706646--1706706 Score: 59
Period size: 23 Copynumber: 2.9 Consensus size: 19
1706636 TTTTGGTGCA
*
1706646 GAGGGAATCGATCCCCCCT
1 GAGGGAACCGATCCCCCCT
*
1706665 GAGGGAACCGATTCCCCCTTT
1 GAGGGAACCGA-TCCCCC-CT
1706686 GAAGGGGAACCGATTCCCCCC
1 G-A-GGGAACCGA-TCCCCCC
1706707 CACAGGGGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
19 10 0.29
20 6 0.17
21 2 0.06
22 1 0.03
23 16 0.46
ACGTcount: A:0.21, C:0.36, G:0.26, T:0.16
Consensus pattern (19 bp):
GAGGGAACCGATCCCCCCT
Found at i:1709587 original size:29 final size:28
Alignment explanation
Indices: 1709554--1709613 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 28
1709544 TTGAAAACAC
* * * *
1709554 AAAGATAAAAATATAAAAGATATAGAAAA
1 AAAGAGAAAAACATAAAA-ACATAAAAAA
1709583 AAAGAGAAAAACATAAAAACATAAAAAA
1 AAAGAGAAAAACATAAAAACATAAAAAA
1709611 AAA
1 AAA
1709614 AAACAAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 11 0.41
29 16 0.59
ACGTcount: A:0.77, C:0.03, G:0.08, T:0.12
Consensus pattern (28 bp):
AAAGAGAAAAACATAAAAACATAAAAAA
Found at i:1709609 original size:1 final size:1
Alignment explanation
Indices: 1709605--1709671 Score: 53
Period size: 1 Copynumber: 67.0 Consensus size: 1
1709595 ATAAAAACAT
* * * * * * ** *
1709605 AAAAAAAAAAAACAAAAAACAAAACAAAAAACAAAAAAAAGAAAAGAAAAAAGGAAAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1709670 AA
1 AA
1709672 TAAGCTTTAA
Statistics
Matches: 50, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 50 1.00
ACGTcount: A:0.87, C:0.06, G:0.07, T:0.00
Consensus pattern (1 bp):
A
Found at i:1709626 original size:7 final size:7
Alignment explanation
Indices: 1709589--1709670 Score: 71
Period size: 7 Copynumber: 11.7 Consensus size: 7
1709579 AAAAAAAGAG
1709589 AAAAACA
1 AAAAACA
1709596 TAAAAACA
1 -AAAAACA
*
1709604 TAAAAAAA
1 -AAAAACA
1709612 AAAAACA
1 AAAAACA
1709619 AAAAAC-
1 AAAAACA
1709625 -AAAACA
1 AAAAACA
1709631 AAAAACA
1 AAAAACA
1709638 AAAAA-A
1 AAAAACA
*
1709644 AGAAAAGA
1 A-AAAACA
**
1709652 AAAAAGG
1 AAAAACA
*
1709659 AAAAAGA
1 AAAAACA
1709666 AAAAA
1 AAAAA
1709671 ATAAGCTTTA
Statistics
Matches: 66, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
5 5 0.08
6 2 0.03
7 43 0.65
8 16 0.24
ACGTcount: A:0.84, C:0.07, G:0.06, T:0.02
Consensus pattern (7 bp):
AAAAACA
Found at i:1709641 original size:8 final size:8
Alignment explanation
Indices: 1709579--1709656 Score: 54
Period size: 8 Copynumber: 9.8 Consensus size: 8
1709569 AAAGATATAG
*
1709579 AAAAAAAG
1 AAAAAAAC
*
1709587 AGAAAAAC
1 AAAAAAAC
*
1709595 ATAAAAAC
1 AAAAAAAC
*
1709603 ATAAAAA-
1 AAAAAAAC
1709610 AAAAAAAC
1 AAAAAAAC
1709618 -AAAAAAC
1 AAAAAAAC
1709625 AAAACAAA-
1 AAAA-AAAC
*
1709633 AAACAAAAA
1 AAA-AAAAC
*
1709642 AAAGAAAAG
1 AAA-AAAAC
1709651 AAAAAA
1 AAAAAA
1709657 GGAAAAAGAA
Statistics
Matches: 59, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
7 13 0.22
8 32 0.54
9 14 0.24
ACGTcount: A:0.85, C:0.08, G:0.05, T:0.03
Consensus pattern (8 bp):
AAAAAAAC
Found at i:1709654 original size:19 final size:17
Alignment explanation
Indices: 1709605--1709654 Score: 64
Period size: 19 Copynumber: 2.7 Consensus size: 17
1709595 ATAAAAACAT
1709605 AAAAAAAAAAAACAAAA
1 AAAAAAAAAAAACAAAA
1709622 AACAAAACAAAAAACAAAA
1 AA-AAAA-AAAAAACAAAA
1709641 AAAAGAAAAGAAAA
1 AAAA-AAAA-AAAA
1709655 AAGGAAAAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
17 2 0.07
18 8 0.28
19 19 0.66
ACGTcount: A:0.88, C:0.08, G:0.04, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAAAACAAAA
Found at i:1709669 original size:34 final size:34
Alignment explanation
Indices: 1709590--1709656 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 34
1709580 AAAAAAGAGA
1709590 AAAACATAAAAACATAAAAAAAAAAAACAAAAAAC
1 AAAACA-AAAAACATAAAAAAAAAAAACAAAAAAC
* *
1709625 AAAACAAAAAACA-AAAAAAAGAAAAGAAAAAA
1 AAAACAAAAAACATAAAAAAAAAAAACAAAAAA
1709657 GGAAAAAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 17 0.57
34 7 0.23
35 6 0.20
ACGTcount: A:0.85, C:0.09, G:0.03, T:0.03
Consensus pattern (34 bp):
AAAACAAAAAACATAAAAAAAAAAAACAAAAAAC
Found at i:1709671 original size:8 final size:8
Alignment explanation
Indices: 1709577--1709671 Score: 50
Period size: 8 Copynumber: 11.1 Consensus size: 8
1709567 TAAAAGATAT
1709577 AGAAAAAA
1 AGAAAAAA
1709585 AGAGAAAAA
1 AGA-AAAAA
* *
1709594 CATAAAAAC
1 -AGAAAAAA
*
1709603 ATAAAAAA
1 AGAAAAAA
1709611 A-AAAAACA
1 AGAAAAA-A
*
1709619 AAAAACAAA
1 AGAAA-AAA
*
1709628 ACAAAAAA
1 AGAAAAAA
1709636 CA-AAAAAA
1 -AGAAAAAA
1709644 AGAAAAGAA
1 AGAAAA-AA
*
1709653 AAAAGGAAAA
1 AGAA--AAAA
1709663 AGAAAAAA
1 AGAAAAAA
1709671 A
1 A
1709672 TAAGCTTTAA
Statistics
Matches: 71, Mismatches: 6, Indels: 20
0.73 0.06 0.21
Matches are distributed among these distances:
7 6 0.08
8 31 0.44
9 23 0.32
10 9 0.13
11 2 0.03
ACGTcount: A:0.83, C:0.06, G:0.08, T:0.02
Consensus pattern (8 bp):
AGAAAAAA
Found at i:1711863 original size:54 final size:54
Alignment explanation
Indices: 1711804--1712215 Score: 270
Period size: 54 Copynumber: 7.6 Consensus size: 54
1711794 ATTTTTTCAT
* * *
1711804 AAGCTAAGCCTGATTTTCAGGGGTTTCTTCATATTTTAAAATGAATTTTGAAAG
1 AAGCTAAGTCTGATTTTCAGGGGTTTCTTGATATTTTAAAATGAATTTTAAAAG
* * ** * * *
1711858 AAGCTAA-TTTATATTTTC-GAAAGTTTCTTGATTATTTTTAAATAAATTTTGAAAG
1 AAGCTAAGTCT-GATTTTCAG-GGGTTTCTTGA-TATTTTAAAATGAATTTTAAAAG
* * ** * * *
1711913 AAACTAAGTCTAATTTTCA-AAGTTTCTTGATAATTTTTAAATGAGTTTTTAAAG
1 AAGCTAAGTCTGATTTTCAGGGGTTTCTTGAT-ATTTTAAAATGAATTTTAAAAG
* * *
1711967 AAGAC-AAGTCTAATTTTCAGGGGTATT-TTGATGTTTTCAAAA-GAATTTTAAAAT
1 AAG-CTAAGTCTGATTTTCAGGGGT-TTCTTGATATTTT-AAAATGAATTTTAAAAG
* * *** *
1712021 AAACTAAGTATGATTTTCAAAAGTTTCTTGATGA-TTTATAAAT-AAGTTTTCAAAG
1 AAGCTAAGTCTGATTTTCAGGGGTTTCTTGAT-ATTTTA-AAATGAA-TTTTAAAAG
* * * *
1712076 AAGCTAAGTCTGATTTTTAGGGGTTTCTTGATGTCTTCAAAT-AGATTTTAAAAG
1 AAGCTAAGTCTGATTTTCAGGGGTTTCTTGATATTTTAAAATGA-ATTTTAAAAG
* * * * * * *
1712130 AAG-TTAGGCATGATTTTTAGGGGTTTCTTGATGTCTTCAAATGAATTTTTAAAG
1 AAGCTAAGTC-TGATTTTCAGGGGTTTCTTGATATTTTAAAATGAATTTTAAAAG
* * *
1712184 AATCTAAGCCTAATTGTT-AGGGGTTTCTTGAT
1 AAGCTAAGTCTGATT-TTCAGGGGTTTCTTGAT
1712216 GATAACTGTA
Statistics
Matches: 288, Mismatches: 48, Indels: 44
0.76 0.13 0.12
Matches are distributed among these distances:
53 11 0.04
54 186 0.65
55 87 0.30
56 4 0.01
ACGTcount: A:0.33, C:0.08, G:0.17, T:0.42
Consensus pattern (54 bp):
AAGCTAAGTCTGATTTTCAGGGGTTTCTTGATATTTTAAAATGAATTTTAAAAG
Found at i:1712132 original size:163 final size:163
Alignment explanation
Indices: 1711816--1712190 Score: 375
Period size: 163 Copynumber: 2.3 Consensus size: 163
1711806 GCTAAGCCTG
* * * *
1711816 ATTTTCAGGGGTTTCTTCATATTTTAAAATGAATTTTGAAAGAAGCTAATTTATATTTTCGAAAG
1 ATTTTCAGGGGTTTCTTCATATTTTAAAATGAATTTTAAAAGAAACTAATGTATATTTTCAAAAG
* * *
1711881 TTTCTTGATTATTTTTAAATAAATTTTGAAAGAAACTAAGTCTAATTTTCAAAGTTTCTTGATAA
66 TTTCTTGATGATTTATAAATAAATTTTCAAAGAAACTAAGTCTAATTTTCAAAGTTTCTTGATAA
* * *
1711946 TTTTTAAATGAGTTTTTAAAGAAGACAAGTCTA
131 TCTTCAAATGAGTTTTAAAAGAAGACAAGTCTA
* * *
1711979 ATTTTCAGGGGTATT-TTGATGTTTTCAAAA-GAATTTTAAAATAAACTAA-GTATGATTTTCAA
1 ATTTTCAGGGGT-TTCTTCATATTTT-AAAATGAATTTTAAAAGAAACTAATGTAT-ATTTTCAA
* * * * **
1712041 AAGTTTCTTGATGATTTATAAATAAGTTTTCAAAGAAGCTAAGTCTGATTTTTAGGGGTTTCTTG
63 AAGTTTCTTGATGATTTATAAATAAATTTTCAAAGAAACTAAGTCTAATTTTCA-AAGTTTCTTG
* ** * *
1712106 AT-GTCTTCAAAT-AGATTTTAAAAGAAG-TTAGGCATG
127 ATAATCTTCAAATGAG-TTTTAAAAGAAGACAAGTC-TA
* * * * * * *
1712142 ATTTTTAGGGGTTTCTTGATGTCTTCAAATGAATTTTTAAAGAATCTAA
1 ATTTTCAGGGGTTTCTTCATATTTTAAAATGAATTTTAAAAGAAACTAA
1712191 GCCTAATTGT
Statistics
Matches: 174, Mismatches: 30, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
162 13 0.07
163 145 0.83
164 16 0.09
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.42
Consensus pattern (163 bp):
ATTTTCAGGGGTTTCTTCATATTTTAAAATGAATTTTAAAAGAAACTAATGTATATTTTCAAAAG
TTTCTTGATGATTTATAAATAAATTTTCAAAGAAACTAAGTCTAATTTTCAAAGTTTCTTGATAA
TCTTCAAATGAGTTTTAAAAGAAGACAAGTCTA
Found at i:1712143 original size:109 final size:108
Alignment explanation
Indices: 1711902--1712216 Score: 320
Period size: 109 Copynumber: 2.9 Consensus size: 108
1711892 TTTTTAAATA
* * * *
1711902 AATTTTGAAAGAAACTAAGTC-TAATTTTC-AAAGTTTCTTGATAATTTTTAAATGAGTTTTTAA
1 AATTTTAAAAGAAACTAAG-CATGATTTTCAAAAGTTTCTTGATGA-TTTTAAATAAGTTTTTAA
* *
1711965 AGAAGAC-AAGTCTAATTTTCAGGGGTATT-TTGATGTTTTCAAAAG
64 AGAAG-CTAAGTCTAATTTTTAGGGGT-TTCTTGATGTCTTCAAAAG
* * *
1712010 AATTTTAAAATAAACTAAGTATGATTTTCAAAAGTTTCTTGATGATTTATAAATAAGTTTTCAAA
1 AATTTTAAAAGAAACTAAGCATGATTTTCAAAAGTTTCTTGATGATTT-TAAATAAGTTTTTAAA
*
1712075 GAAGCTAAGTCTGATTTTTAGGGGTTTCTTGATGTCTTCAAATAG
65 GAAGCTAAGTCTAATTTTTAGGGGTTTCTTGATGTCTTCAAA-AG
** * * *** *
1712120 -ATTTTAAAAGAAGTTAGGCATGATTTTTAGGGGTTTCTTGATG-TCTTCAAATGAA-TTTTTAA
1 AATTTTAAAAGAAACTAAGCATGATTTTCAAAAGTTTCTTGATGAT-TTTAAAT-AAGTTTTTAA
* * *
1712182 AGAATCTAAGCCTAATTGTTAGGGGTTTCTTGATG
64 AGAAGCTAAGTCTAATTTTTAGGGGTTTCTTGATG
1712217 ATAACTGTAA
Statistics
Matches: 174, Mismatches: 25, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
108 72 0.41
109 100 0.57
110 2 0.01
ACGTcount: A:0.34, C:0.08, G:0.17, T:0.41
Consensus pattern (108 bp):
AATTTTAAAAGAAACTAAGCATGATTTTCAAAAGTTTCTTGATGATTTTAAATAAGTTTTTAAAG
AAGCTAAGTCTAATTTTTAGGGGTTTCTTGATGTCTTCAAAAG
Found at i:1712255 original size:57 final size:54
Alignment explanation
Indices: 1712067--1712248 Score: 161
Period size: 54 Copynumber: 3.3 Consensus size: 54
1712057 TATAAATAAG
* * * * *
1712067 TTTTCAAAGAAGCTAAGTCTGATTTTTAGGGGTTTCTTGATGTCTTCAAAT-AGA
1 TTTTTAAAGAAGCCAAGCCTAATTGTTAGGGGTTTCTTGATGTCTTCAAATGA-A
* ** * * * *
1712121 TTTTAAAAGAAGTTAGGCATGATTTTTAGGGGTTTCTTGATGTCTTCAAATGAA
1 TTTTTAAAGAAGCCAAGCCTAATTGTTAGGGGTTTCTTGATGTCTTCAAATGAA
* * *
1712175 TTTTTAAAGAATCTAAGCCTAATTGTTAGGGGTTTCTTGATGATAACTGT-AAATGAT
1 TTTTTAAAGAAGCCAAGCCTAATTGTTAGGGGTTTCTTGATG-T--CT-TCAAATGAA
*
1712232 TTTTTGAAGAAGCCAAG
1 TTTTTAAAGAAGCCAAG
1712249 TTTAATTTTC
Statistics
Matches: 107, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
54 82 0.77
55 2 0.02
57 22 0.21
58 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (54 bp):
TTTTTAAAGAAGCCAAGCCTAATTGTTAGGGGTTTCTTGATGTCTTCAAATGAA
Found at i:1713160 original size:14 final size:16
Alignment explanation
Indices: 1713131--1713162 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
1713121 TATTTTGTCC
1713131 TTCTCAGAATAATTGT
1 TTCTCAGAATAATTGT
1713147 TTCT-AGAA-AATTGT
1 TTCTCAGAATAATTGT
1713161 TT
1 TT
1713163 AAATCCTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 4 0.25
16 4 0.25
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.47
Consensus pattern (16 bp):
TTCTCAGAATAATTGT
Found at i:1714071 original size:43 final size:41
Alignment explanation
Indices: 1714023--1714105 Score: 112
Period size: 41 Copynumber: 2.0 Consensus size: 41
1714013 AAAACTTATT
*
1714023 CAACCTTAGCTCGTTTCCATCACATAAGGAGTTGGAACAACAC
1 CAACCTTAGCTC--ATCCATCACATAAGGAGTTGGAACAACAC
* * *
1714066 CAACCTTGGCTCATCCATCACATATGGAGTTGGATCAACA
1 CAACCTTAGCTCATCCATCACATAAGGAGTTGGAACAACA
1714106 ACATCACTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
41 25 0.69
43 11 0.31
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (41 bp):
CAACCTTAGCTCATCCATCACATAAGGAGTTGGAACAACAC
Found at i:1714084 original size:202 final size:201
Alignment explanation
Indices: 1713721--1714317 Score: 745
Period size: 202 Copynumber: 3.0 Consensus size: 201
1713711 TTTTCAATTT
* * * * * *
1713721 CATCATAGAAGGAGGTAGATCAACATTTTCAGTGGAGAGTTTATAATGAGAATAACTCATCC-AA
1 CATCAAAGAATGAGATAGATCAACA-TTTCAGTGGAGAGTTCATAATGAGAAGAACTTATCCGAA
*
1713785 TGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTAGCTCGTTTCCATCACAAAAGG
65 -GAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTAGCTCGTTTCCATCACATAAGG
* * * *
1713850 AGTTGGAACATCACCGACCTTGGCTCATCCATCATATATGGAGTTGGATCATCATCATCATTTTG
129 AGTTGGAACAACACCGACCTTGGCTCATCCATCACATATGGAGTTGGATCAACAACATCATTTTG
1713915 TTCGATTC
194 TTCGATTC
* *
1713923 CATCAAAGAAAT-AGATGGATCAACATTTCAAGTGGAGAGTTCAAAATGAGAAGAACTTATCCGA
1 CATCAAAG-AATGAGATAGATCAACATTTC-AGTGGAGAGTTCATAATGAGAAGAACTTATCCGA
* * * *
1713987 AAAGGGAGAAAAAGTTCATAATGAGAAAAACTTATTCAACCTTAGCTCGTTTCCATCACATAAGG
64 AGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTAGCTCGTTTCCATCACATAAGG
* *
1714052 AGTTGGAACAACACCAACCTTGGCTCATCCATCACATATGGAGTTGGATCAACAACATCACTTTG
129 AGTTGGAACAACACCGACCTTGGCTCATCCATCACATATGGAGTTGGATCAACAACATCATTTTG
* *
1714117 TTTGATTT
194 TTCGATTC
* * * * * * *
1714125 CATCAAAGAATGAGGTATATCAACATATTCAGTAGAGATTTCATAGTGAGAAGAACTTGTCCGAT
1 CATCAAAGAATGAGATAGATCAACAT-TTCAGTGGAGAGTTCATAATGAGAAGAACTTATCCGAA
** * * *
1714190 GAGAAAGAAGAAGTTCATAATGTGAAGAACTTGTTCAACCTCAAGCTCGATTT-CAT--CATATG
65 GAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCT-TAGCTCG-TTTCCATCACATAAG
* * * * **
1714252 GAGTTGGAACAGCACCGACCTTGGCTCATCCATCACATAAGGAGTTGGCTCAGCGCCATCATTTT
128 GAGTTGGAACAACACCGACCTTGGCTCATCCATCACATATGGAGTTGGATCAACAACATCATTTT
1714317 G
193 G
1714318 CTCGTCCATC
Statistics
Matches: 341, Mismatches: 47, Indels: 15
0.85 0.12 0.04
Matches are distributed among these distances:
201 70 0.21
202 252 0.74
203 16 0.05
204 3 0.01
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.27
Consensus pattern (201 bp):
CATCAAAGAATGAGATAGATCAACATTTCAGTGGAGAGTTCATAATGAGAAGAACTTATCCGAAG
AGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTAGCTCGTTTCCATCACATAAGGAG
TTGGAACAACACCGACCTTGGCTCATCCATCACATATGGAGTTGGATCAACAACATCATTTTGTT
CGATTC
Found at i:1714329 original size:42 final size:42
Alignment explanation
Indices: 1714275--1714517 Score: 211
Period size: 42 Copynumber: 5.8 Consensus size: 42
1714265 ACCGACCTTG
* ** *
1714275 GCTCATCCATCACATAAGGAGTTGGCTCAGCGCCATCATTTT
1 GCTCATCCATCACATAAGGAGTTGGATCAGCATCATCATTTC
* * * *
1714317 GCTCGTCCATCACATAAGTAGTTGAATCAGCATCATCATTTT
1 GCTCATCCATCACATAAGGAGTTGGATCAGCATCATCATTTC
* * * * *
1714359 ACTTATCCATCACATAAAGAATTAGATCAGCATCATCATTTC
1 GCTCATCCATCACATAAGGAGTTGGATCAGCATCATCATTTC
* * ** * * *
1714401 ACTTATAAATCACATAAAGAGTTGGATCAACATCATAATTTC
1 GCTCATCCATCACATAAGGAGTTGGATCAGCATCATCATTTC
* * * * *
1714443 GTTCGTCCATCACATAAGGAGTTGGATCACCATCA-C-CTTG
1 GCTCATCCATCACATAAGGAGTTGGATCAGCATCATCATTTC
* * * *
1714483 GCCCATCAATCACATAAGGAGTCGGATCATCATCA
1 GCTCATCCATCACATAAGGAGTTGGATCAGCATCA
1714518 CCTTGGGTTA
Statistics
Matches: 163, Mismatches: 38, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
40 31 0.19
42 132 0.81
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (42 bp):
GCTCATCCATCACATAAGGAGTTGGATCAGCATCATCATTTC
Found at i:1714807 original size:3 final size:3
Alignment explanation
Indices: 1714801--1714843 Score: 54
Period size: 3 Copynumber: 14.7 Consensus size: 3
1714791 TTTTATCCCA
*
1714801 AAT AAT AAT AAT AAT -AT AAA AAT AAAT AA- AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AA
1714844 AGAGAAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
2 4 0.11
3 28 0.80
4 3 0.09
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:1723675 original size:22 final size:22
Alignment explanation
Indices: 1723650--1723719 Score: 83
Period size: 20 Copynumber: 3.2 Consensus size: 22
1723640 TTATAATGTT
1723650 AAAATATATTATTTAATTATTA
1 AAAATATATTATTTAATTATTA
*
1723672 AAAATATAGTA---AATTATTA
1 AAAATATATTATTTAATTATTA
*
1723691 TAAAATATATTATTTTAATTATTT
1 -AAAATATATTA-TTTAATTATTA
1723715 AAAAT
1 AAAAT
1723720 GTTGATATAT
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
19 8 0.20
20 10 0.25
22 10 0.25
23 5 0.12
24 7 0.17
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (22 bp):
AAAATATATTATTTAATTATTA
Found at i:1725021 original size:31 final size:31
Alignment explanation
Indices: 1724985--1725043 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
1724975 AACTTAAAAG
* *
1724985 AGTTTTGCAATACTGAGATTTAAATAATTTT
1 AGTTTTACAATACTGAAATTTAAATAATTTT
1725016 AGTTTTACAATACTGAAATTTAAATAAT
1 AGTTTTACAATACTGAAATTTAAATAAT
1725044 CTATACAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (31 bp):
AGTTTTACAATACTGAAATTTAAATAATTTT
Found at i:1725141 original size:22 final size:21
Alignment explanation
Indices: 1725072--1725141 Score: 52
Period size: 22 Copynumber: 3.2 Consensus size: 21
1725062 AAATTATTTA
* **
1725072 AAATAAATCAATACATATTTT
1 AAATAAATCAATCCATATAAT
* *
1725093 AAAATAAATCAATCTATAT-TT
1 -AAATAAATCAATCCATATAAT
1725114 CAAAATAAATCAATCCATACTAAT
1 --AAATAAATCAATCCATA-TAAT
1725138 AAAT
1 AAAT
1725142 TATTTAAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
21 2 0.05
22 37 0.90
23 1 0.02
24 1 0.02
ACGTcount: A:0.54, C:0.13, G:0.00, T:0.33
Consensus pattern (21 bp):
AAATAAATCAATCCATATAAT
Found at i:1725150 original size:54 final size:54
Alignment explanation
Indices: 1725090--1725327 Score: 395
Period size: 54 Copynumber: 4.4 Consensus size: 54
1725080 CAATACATAT
* *
1725090 TTTAAAATAAATCAATCTATATTTCAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTA
*
1725144 TTTAAAATAAATTAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTA
** * *
1725198 TTTAAAATAAATCAATCCATACAATAAAAATAAATCAATCAATACTAATAAATTA
1 TTTAAAATAAATCAATCCATA-TTTTAAAATAAATCAATCCATACTAATAAATTA
*
1725253 TTTAAAATAAATCAATCTATATTTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTA
1725307 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
1725328 CAACTACAAT
Statistics
Matches: 169, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
54 120 0.71
55 49 0.29
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (54 bp):
TTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTA
Found at i:1725151 original size:32 final size:32
Alignment explanation
Indices: 1725109--1725328 Score: 210
Period size: 32 Copynumber: 7.8 Consensus size: 32
1725099 AATCAATCTA
1725109 TATTTCAAAATAAATCAATCCATACTAATAAAT
1 TATTT-AAAATAAATCAATCCATACTAATAAAT
*
1725142 TATTTAAAATAAATTAAT-C---C--AT--A-
1 TATTTAAAATAAATCAATCCATACTAATAAAT
1725165 T-TTTAAAATAAATCAATCCATACTAATAAAT
1 TATTTAAAATAAATCAATCCATACTAATAAAT
1725196 TATTTAAAATAAATCAATCCATAC-----AA-
1 TATTTAAAATAAATCAATCCATACTAATAAAT
*
1725222 TA---AAAATAAATCAATCAATACTAATAAAT
1 TATTTAAAATAAATCAATCCATACTAATAAAT
1725251 TATTTAAAATAAATC-A---AT-CT-AT--A-
1 TATTTAAAATAAATCAATCCATACTAATAAAT
1725274 T-TTTAAAATAAATCAATCCATACTAATAAAT
1 TATTTAAAATAAATCAATCCATACTAATAAAT
1725305 TATTTAAAATAAATCAATCCATAC
1 TATTTAAAATAAATCAATCCATAC
1725329 AACTACAATA
Statistics
Matches: 155, Mismatches: 3, Indels: 59
0.71 0.01 0.27
Matches are distributed among these distances:
22 28 0.18
23 22 0.14
24 2 0.01
26 9 0.06
27 6 0.04
28 9 0.06
29 2 0.01
30 2 0.01
31 4 0.03
32 66 0.43
33 5 0.03
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.34
Consensus pattern (32 bp):
TATTTAAAATAAATCAATCCATACTAATAAAT
Found at i:1725159 original size:22 final size:22
Alignment explanation
Indices: 1725134--1725177 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
1725124 CAATCCATAC
1725134 TAATAAAT-TATTTAAAATAAAT
1 TAATAAATAT-TTTAAAATAAAT
**
1725156 TAATCCATATTTTAAAATAAAT
1 TAATAAATATTTTAAAATAAAT
1725178 CAATCCATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (22 bp):
TAATAAATATTTTAAAATAAAT
Found at i:1725186 original size:22 final size:22
Alignment explanation
Indices: 1725068--1725132 Score: 103
Period size: 22 Copynumber: 3.0 Consensus size: 22
1725058 TAATAAATTA
*
1725068 TTTAAAATAAATCAATACATAT
1 TTTAAAATAAATCAATCCATAT
*
1725090 TTTAAAATAAATCAATCTATAT
1 TTTAAAATAAATCAATCCATAT
*
1725112 TTCAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
1725133 CTAATAAATT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:1725192 original size:18 final size:18
Alignment explanation
Indices: 1725171--1725250 Score: 51
Period size: 23 Copynumber: 4.4 Consensus size: 18
1725161 CATATTTTAA
1725171 AATAAATCAATCCATACT
1 AATAAATCAATCCATACT
* * *
1725189 AATAAAT-TAT--TTA-A
1 AATAAATCAATCCATACT
1725203 AATAAATCAATCCATACAAT
1 AATAAATCAATCCATAC--T
*
1725223 AAAAATAAATCAATCAATACT
1 ---AATAAATCAATCCATACT
1725244 AATAAAT
1 AATAAAT
1725251 TATTTAAAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 18
0.65 0.10 0.25
Matches are distributed among these distances:
14 7 0.15
15 4 0.09
17 4 0.09
18 14 0.30
21 1 0.02
23 16 0.35
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (18 bp):
AATAAATCAATCCATACT
Found at i:1725195 original size:22 final size:22
Alignment explanation
Indices: 1725146--1725194 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
1725136 ATAAATTATT
* **
1725146 TAAAATAAATTAATCCATATTT
1 TAAAATAAATCAATCCATATAA
1725168 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
1725191 TAAA
1 TAAA
1725195 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:1725229 original size:23 final size:24
Alignment explanation
Indices: 1725201--1725303 Score: 84
Period size: 23 Copynumber: 4.1 Consensus size: 24
1725191 TAAATTATTT
*
1725201 AAAATAAATCAATCCATAC-AATA
1 AAAATAAATCAATCAATACTAATA
1725224 AAAATAAATCAATCAATACTAATA
1 AAAATAAATCAATCAATACTAATA
* * *
1725248 AATTATTTAAAATAAATCAAT-CTATATTTT
1 AA--A-AT-AAATCAATCAATACTA-A--TA
*
1725278 AAAATAAATCAATCCATACTAATA
1 AAAATAAATCAATCAATACTAATA
1725302 AA
1 AA
1725304 TTATTTAAAA
Statistics
Matches: 63, Mismatches: 8, Indels: 17
0.72 0.09 0.19
Matches are distributed among these distances:
23 18 0.29
24 9 0.14
26 12 0.19
27 8 0.13
28 13 0.21
30 3 0.05
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30
Consensus pattern (24 bp):
AAAATAAATCAATCAATACTAATA
Found at i:1725235 original size:109 final size:109
Alignment explanation
Indices: 1725090--1725349 Score: 423
Period size: 109 Copynumber: 2.4 Consensus size: 109
1725080 CAATACATAT
* ** * *
1725090 TTTAAAATAAATCAATCTATA-TTTCAAAATAAATCAATCCATACTAATAAATTATTTAAAATAA
1 TTTAAAATAAATCAATCCATACAATAAAAATAAATCAATCAATACTAATAAATTATTTAAAATAA
*
1725154 ATTAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTA
66 ATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTA
1725198 TTTAAAATAAATCAATCCATACAATAAAAATAAATCAATCAATACTAATAAATTATTTAAAATAA
1 TTTAAAATAAATCAATCCATACAATAAAAATAAATCAATCAATACTAATAAATTATTTAAAATAA
*
1725263 ATCAATCTATATTTTAAAATAAATCAATCCATACTAATAAATTA
66 ATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTA
1725307 TTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATC
1 TTTAAAATAAATCAATCCATACAA-TA-AA-AATAAATCAATC
1725350 TATATTTTAA
Statistics
Matches: 141, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
108 20 0.14
109 105 0.74
110 2 0.01
111 2 0.01
112 12 0.09
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33
Consensus pattern (109 bp):
TTTAAAATAAATCAATCCATACAATAAAAATAAATCAATCAATACTAATAAATTATTTAAAATAA
ATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTA
Found at i:1725304 original size:22 final size:22
Alignment explanation
Indices: 1725255--1725303 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
1725245 ATAAATTATT
* **
1725255 TAAAATAAATCAATCTATATTT
1 TAAAATAAATCAATCCATATAA
1725277 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
1725300 TAAA
1 TAAA
1725304 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:1725384 original size:22 final size:23
Alignment explanation
Indices: 1725309--1725383 Score: 73
Period size: 22 Copynumber: 3.2 Consensus size: 23
1725299 ATAAATTATT
1725309 TAAAATAAATCAATCCATAC-AA
1 TAAAATAAATCAATCCATACTAA
* **
1725331 CTACAATAATAAATCAATCTATA-TTT
1 -T--AA-AATAAATCAATCCATACTAA
1725357 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATACTAA
1725380 TAAA
1 TAAA
1725384 TTATTTAAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
22 15 0.37
23 8 0.20
25 3 0.07
26 15 0.37
ACGTcount: A:0.55, C:0.16, G:0.00, T:0.29
Consensus pattern (23 bp):
TAAAATAAATCAATCCATACTAA
Found at i:1725394 original size:32 final size:31
Alignment explanation
Indices: 1725355--1725452 Score: 106
Period size: 32 Copynumber: 3.4 Consensus size: 31
1725345 CAATCTATAT
1725355 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAAT-CATACTAATAAATTA
*
1725387 TTTAAAATAAAT-AA--AT-C-CAT--A-T-
1 TTTAAAATAAATCAATCATACTAATAAATTA
1725409 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAA-TCATACTAATAAATTA
1725441 TTTAAAATAAAT
1 TTTAAAATAAAT
1725453 TATTTTAAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 20
0.71 0.03 0.26
Matches are distributed among these distances:
22 12 0.22
23 3 0.06
24 1 0.02
26 4 0.07
27 2 0.04
28 4 0.07
30 1 0.02
31 3 0.06
32 24 0.44
ACGTcount: A:0.54, C:0.09, G:0.00, T:0.37
Consensus pattern (31 bp):
TTTAAAATAAATCAATCATACTAATAAATTA
Found at i:1725399 original size:18 final size:18
Alignment explanation
Indices: 1725378--1725452 Score: 52
Period size: 22 Copynumber: 4.2 Consensus size: 18
1725368 AATCCATACT
1725378 AATAAATTATTTAAAATA
1 AATAAATTATTTAAAATA
1725396 AATAAATCCATATTTTAAAATA
1 AATAAAT---TA-TTTAAAATA
* *
1725418 AATCAATTCA--T--ACT-
1 AATAAATT-ATTTAAAATA
1725432 AATAAATTATTTAAAATA
1 AATAAATTATTTAAAATA
1725450 AAT
1 AAT
1725453 TATTTTAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 20
0.64 0.06 0.30
Matches are distributed among these distances:
13 1 0.02
14 7 0.16
15 3 0.07
17 3 0.07
18 10 0.23
19 1 0.02
20 1 0.02
21 2 0.05
22 15 0.35
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (18 bp):
AATAAATTATTTAAAATA
Found at i:1725413 original size:22 final size:22
Alignment explanation
Indices: 1725387--1725429 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
1725377 TAATAAATTA
1725387 TTTAAAATAAATAAATCCATAT
1 TTTAAAATAAATAAATCCATAT
* *
1725409 TTTAAAATAAATCAATTCATA
1 TTTAAAATAAATAAATCCATA
1725430 CTAATAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.37
Consensus pattern (22 bp):
TTTAAAATAAATAAATCCATAT
Found at i:1725420 original size:54 final size:54
Alignment explanation
Indices: 1725338--1725452 Score: 203
Period size: 54 Copynumber: 2.1 Consensus size: 54
1725328 CAACTACAAT
* *
1725338 AATAAATCAATCTATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAA
1 AATAAATAAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAA
*
1725392 AATAAATAAATCCATATTTTAAAATAAATCAATTCATACTAATAAATTATTTAA
1 AATAAATAAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAA
1725446 AATAAAT
1 AATAAAT
1725453 TATTTTAAAA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.37
Consensus pattern (54 bp):
AATAAATAAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAA
Found at i:1725461 original size:15 final size:15
Alignment explanation
Indices: 1725432--1725497 Score: 116
Period size: 15 Copynumber: 4.5 Consensus size: 15
1725422 AATTCATACT
1725432 AATAAATTA-TTTAA
1 AATAAATTATTTTAA
1725446 AATAAATTATTTTAA
1 AATAAATTATTTTAA
*
1725461 AATAAATTATTTTAT
1 AATAAATTATTTTAA
1725476 AATAAATTATTTTAA
1 AATAAATTATTTTAA
1725491 AATAAAT
1 AATAAAT
1725498 AACCTTATTA
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
14 9 0.18
15 40 0.82
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
AATAAATTATTTTAA
Found at i:1727286 original size:18 final size:18
Alignment explanation
Indices: 1727257--1727292 Score: 56
Period size: 17 Copynumber: 2.0 Consensus size: 18
1727247 GAGTAATAAG
1727257 ATGATGAAAGGAGAAAACA
1 ATGATGAAAGGA-AAAACA
1727276 ATGAT-AAAGGAAAAACA
1 ATGATGAAAGGAAAAACA
1727293 CGATGAGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 6 0.35
19 5 0.29
ACGTcount: A:0.61, C:0.06, G:0.22, T:0.11
Consensus pattern (18 bp):
ATGATGAAAGGAAAAACA
Found at i:1727298 original size:19 final size:19
Alignment explanation
Indices: 1727255--1727303 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 19
1727245 TGGAGTAATA
1727255 AGATGATGAAAGGAGAAAAC
1 AGATGAT-AAAGGAGAAAAC
1727275 A-ATGATAAAGGA-AAAAC
1 AGATGATAAAGGAGAAAAC
1727292 ACGATGAGTAAA
1 A-GATGA-TAAA
1727304 AAAAAAATCC
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
17 6 0.23
18 6 0.23
19 9 0.35
20 5 0.19
ACGTcount: A:0.57, C:0.06, G:0.24, T:0.12
Consensus pattern (19 bp):
AGATGATAAAGGAGAAAAC
Found at i:1728451 original size:14 final size:15
Alignment explanation
Indices: 1728432--1728460 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
1728422 TGTGATATAC
1728432 AAATTTTTT-TTATT
1 AAATTTTTTGTTATT
1728446 AAATTTTTTGTTATT
1 AAATTTTTTGTTATT
1728461 TTTATTTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (15 bp):
AAATTTTTTGTTATT
Found at i:1732108 original size:19 final size:20
Alignment explanation
Indices: 1732064--1732108 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
1732054 ATTTGTTTTT
*
1732064 AATAAATTTTTATATATGAA
1 AATAAATTTTTATATATCAA
* *
1732084 ATTAAATTTTTAT-TTTCAA
1 AATAAATTTTTATATATCAA
1732103 AATAAA
1 AATAAA
1732109 ATATTAAAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (20 bp):
AATAAATTTTTATATATCAA
Found at i:1739105 original size:20 final size:20
Alignment explanation
Indices: 1739080--1739117 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
1739070 GTTTGTGGCC
1739080 ATTTCTAGCCGTTAGGGATG
1 ATTTCTAGCCGTTAGGGATG
*
1739100 ATTTCTAGCCGTTTGGGA
1 ATTTCTAGCCGTTAGGGA
1739118 ATGAAATCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.16, G:0.29, T:0.37
Consensus pattern (20 bp):
ATTTCTAGCCGTTAGGGATG
Found at i:1742577 original size:20 final size:20
Alignment explanation
Indices: 1742549--1742592 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
1742539 TTTGTGGTCG
*
1742549 TTTCTAGCTATTGGGGATGA
1 TTTCGAGCTATTGGGGATGA
* *
1742569 TTTCGAGCTGTTTGGGATGA
1 TTTCGAGCTATTGGGGATGA
1742589 TTTC
1 TTTC
1742593 TAGTCGTTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.16, C:0.11, G:0.30, T:0.43
Consensus pattern (20 bp):
TTTCGAGCTATTGGGGATGA
Found at i:1742608 original size:21 final size:21
Alignment explanation
Indices: 1742559--1742609 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
1742549 TTTCTAGCTA
1742559 TTGGGGATGATTTCGAGCTGT
1 TTGGGGATGATTTCGAGCTGT
*
1742580 TT-GGGATGATTTCTAG-TCGT
1 TTGGGGATGATTTCGAGCT-GT
1742600 TTGGGGATGA
1 TTGGGGATGA
1742610 AATCTCTGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 1 0.04
20 17 0.63
21 9 0.33
ACGTcount: A:0.16, C:0.08, G:0.37, T:0.39
Consensus pattern (21 bp):
TTGGGGATGATTTCGAGCTGT
Found at i:1743358 original size:18 final size:18
Alignment explanation
Indices: 1743332--1743366 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
1743322 CCTAAAACTT
* *
1743332 TTTTTAATTTTAATTTTA
1 TTTTAAATTATAATTTTA
1743350 TTTTAAATTATAATTTT
1 TTTTAAATTATAATTTT
1743367 TAAAAGAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTTAAATTATAATTTTA
Found at i:1743840 original size:17 final size:17
Alignment explanation
Indices: 1743819--1743853 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
1743809 ATTTTTTGAT
1743819 TTTTTATTAATAAAAATA
1 TTTTTATTAA-AAAAATA
*
1743837 TTTTTTTTAAAAAAATA
1 TTTTTATTAAAAAAATA
1743854 AAAAGTAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TTTTTATTAAAAAAATA
Found at i:1744729 original size:20 final size:19
Alignment explanation
Indices: 1744675--1744829 Score: 57
Period size: 20 Copynumber: 7.7 Consensus size: 19
1744665 CGATCACTAA
1744675 ATCGCAACGCGATCTTCAGT
1 ATCGCAACGCGAT-TTCAGT
** *
1744695 ATCGCAAATCAATTTCCAG-
1 ATCGCAACGCGATTT-CAGT
* *
1744714 ATTCGCAACGCGATTTTTACT
1 A-TCGCAACGCGA-TTTCAGT
** *
1744735 ATCGCAATTCGAATATGT-A-A
1 ATCGCAACGCG-AT-T-TCAGT
*
1744755 ATCGCAACGCGATAATACA-T
1 ATCGCAACGCGAT--TTCAGT
* *
1744775 AATCGCAACGCGATTCTGACT
1 -ATCGCAACGCGATT-TCAGT
* *
1744796 ATCGCAACGCGATTCTAACT
1 ATCGCAACGCGATT-TCAGT
1744816 ATCGCAACGCGATT
1 ATCGCAACGCGATT
1744830 CTTACTGTCG
Statistics
Matches: 105, Mismatches: 18, Indels: 24
0.71 0.12 0.16
Matches are distributed among these distances:
19 6 0.06
20 77 0.73
21 21 0.20
22 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (19 bp):
ATCGCAACGCGATTTCAGT
Found at i:1744760 original size:40 final size:39
Alignment explanation
Indices: 1744671--1744767 Score: 104
Period size: 40 Copynumber: 2.4 Consensus size: 39
1744661 AATGCGATCA
* *
1744671 CTAAATCGCAACGCGATCTTCAGTATCGCAAATCAATTT
1 CTAAATCGCAACGCGATCTTCACTATCGCAAATCAATAT
* * * * *
1744710 CCAGATTCGCAACGCGATTTTTACTATCGCAATTCGAATAT
1 CTA-AATCGCAACGCGATCTTCACTATCGCAAATC-AATAT
*
1744751 GTAAATCGCAACGCGAT
1 CTAAATCGCAACGCGAT
1744768 AATACATAAT
Statistics
Matches: 46, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
39 2 0.04
40 39 0.85
41 5 0.11
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (39 bp):
CTAAATCGCAACGCGATCTTCACTATCGCAAATCAATAT
Found at i:1744800 original size:41 final size:40
Alignment explanation
Indices: 1744755--1744843 Score: 117
Period size: 40 Copynumber: 2.2 Consensus size: 40
1744745 GAATATGTAA
1744755 ATCGCAACGCGATAAT-ACATAATCGCAACGCGATTCTGACT
1 ATCGCAACGCGATAATAAC-T-ATCGCAACGCGATTCTGACT
** *
1744796 ATCGCAACGCGATTCTAACTATCGCAACGCGATTCTTACT
1 ATCGCAACGCGATAATAACTATCGCAACGCGATTCTGACT
*
1744836 GTCGCAAC
1 ATCGCAAC
1744844 ACTGAATTTC
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
40 26 0.60
41 15 0.35
42 2 0.05
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (40 bp):
ATCGCAACGCGATAATAACTATCGCAACGCGATTCTGACT
Found at i:1744830 original size:20 final size:20
Alignment explanation
Indices: 1744776--1744843 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
1744766 ATAATACATA
*
1744776 ATCGCAACGCGATTCTGACT
1 ATCGCAACGCGATTCTAACT
1744796 ATCGCAACGCGATTCTAACT
1 ATCGCAACGCGATTCTAACT
*
1744816 ATCGCAACGCGATTCTTACT
1 ATCGCAACGCGATTCTAACT
*
1744836 GTCGCAAC
1 ATCGCAAC
1744844 ACTGAATTTC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (20 bp):
ATCGCAACGCGATTCTAACT
Found at i:1748628 original size:231 final size:230
Alignment explanation
Indices: 1748207--1748669 Score: 869
Period size: 231 Copynumber: 2.0 Consensus size: 230
1748197 AAATGATAAC
1748207 CAAATTTCAATAACTGATATTAAATGTAAAACAAAATTAACTGAAATATATTAAAAAAAGTCCAA
1 CAAATTTCAATAACTGATATTAAATGTAAAACAAAATTAACTGAAATATATTAAAAAAAGTCCAA
1748272 CAAATTTAACAAAATAAAATAAGTATTAAATGAGAAATAATAAAAAAATTACAATTAAACAAAAT
66 CAAATTTAACAAAATAAAATAAGTATTAAATGAGAAATAATAAAAAAATTACAATTAAACAAAAT
1748337 AAAGTAAATACAAATATAATAAAAAAATCTATCGATGTCTGTGTCGCGAATGTGTTCCGCAGGGC
131 AAAGTAAATACAAATATAATAAAAAAATCTATCGATGTCTGTGTCGCGAATGTGTTCCGCAGGGC
1748402 -G-GGTTGTCGGTCTCGA-GAGGATTTCTTCGTAT
196 GGTGGTTGTCGGTCTCGAGGAGGATTTCTTCGTAT
1748434 CAAATTTCAATAACTGATATTAAATGGTAATAAACAAAATTAACTGAAATATATTAAAAAAAGTC
1 CAAATTTCAATAACTGATATTAAAT-GT-A-AAACAAAATTAACTGAAATATATTAAAAAAAGTC
1748499 CAACAAATTTAACAAAATAAAATAAGTATTAAATGAGAAATAATAAAAAAAATTACAATTAAACA
63 CAACAAATTTAACAAAATAAAATAAGTATTAAATGAGAAATAAT-AAAAAAATTACAATTAAACA
1748564 AAATAAAGTAAATACAAATATAATAAAAAAATCTATCGATGTCTGTGTCGCGAATGTGTTCCGCA
127 AAATAAAGTAAATACAAATATAATAAAAAAATCTATCGATGTCTGTGTCGCGAATGTGTTCCGCA
1748629 GGGCGGTGGTTGTCGGTCTCGAGGAGGATTTCTTCGTAT
192 GGGCGGTGGTTGTCGGTCTCGAGGAGGATTTCTTCGTAT
1748668 CA
1 CA
1748670 CTGGTTCTGA
Statistics
Matches: 229, Mismatches: 0, Indels: 7
0.97 0.00 0.03
Matches are distributed among these distances:
227 25 0.11
228 2 0.01
229 1 0.00
230 78 0.34
231 89 0.39
232 1 0.00
233 15 0.07
234 18 0.08
ACGTcount: A:0.47, C:0.11, G:0.14, T:0.28
Consensus pattern (230 bp):
CAAATTTCAATAACTGATATTAAATGTAAAACAAAATTAACTGAAATATATTAAAAAAAGTCCAA
CAAATTTAACAAAATAAAATAAGTATTAAATGAGAAATAATAAAAAAATTACAATTAAACAAAAT
AAAGTAAATACAAATATAATAAAAAAATCTATCGATGTCTGTGTCGCGAATGTGTTCCGCAGGGC
GGTGGTTGTCGGTCTCGAGGAGGATTTCTTCGTAT
Found at i:1748715 original size:18 final size:18
Alignment explanation
Indices: 1748689--1748727 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
1748679 ACTCCTCGCT
*
1748689 GTCATCATCATCGTCGTC
1 GTCACCATCATCGTCGTC
*
1748707 GTCACCATCGTCGTCGTC
1 GTCACCATCATCGTCGTC
1748725 GTC
1 GTC
1748728 GTCGTCCTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.13, C:0.36, G:0.21, T:0.31
Consensus pattern (18 bp):
GTCACCATCATCGTCGTC
Found at i:1750739 original size:111 final size:111
Alignment explanation
Indices: 1750602--1750823 Score: 426
Period size: 111 Copynumber: 2.0 Consensus size: 111
1750592 ATTACAAAAA
*
1750602 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTA
*
1750667 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTCGAGATAT
66 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTAGAGATAT
1750713 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTA
1750778 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTAGAGATAT
66 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTAGAGATAT
1750824 ATGATTTCCA
Statistics
Matches: 109, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
111 109 1.00
ACGTcount: A:0.45, C:0.11, G:0.08, T:0.36
Consensus pattern (111 bp):
TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTA
AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTAGAGATAT
Found at i:1751165 original size:50 final size:50
Alignment explanation
Indices: 1751111--1751231 Score: 145
Period size: 50 Copynumber: 2.4 Consensus size: 50
1751101 AGATACCTAG
* * * *
1751111 GTATAGCGCGGATCAGGGGGCGCACTATATCTATGTGGCGCCAGATCACC
1 GTATAGCGCGGATCAGGGGGCGCACTATACCCACGTGGCGCCAAATCACC
* ** *
1751161 GTATATCGCGGGA-CAGGGGGCGCGTTATACCCACGTGGCGCCAAATCAGC
1 GTATAGCGC-GGATCAGGGGGCGCACTATACCCACGTGGCGCCAAATCACC
*
1751211 GTATAGCGCGGTTCAGGGGGC
1 GTATAGCGCGGATCAGGGGGC
1751232 ATGCTTTACT
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
49 2 0.03
50 54 0.92
51 3 0.05
ACGTcount: A:0.21, C:0.26, G:0.36, T:0.18
Consensus pattern (50 bp):
GTATAGCGCGGATCAGGGGGCGCACTATACCCACGTGGCGCCAAATCACC
Found at i:1753929 original size:51 final size:49
Alignment explanation
Indices: 1753803--1753978 Score: 181
Period size: 51 Copynumber: 3.7 Consensus size: 49
1753793 TATAAAATCC
* *
1753803 CTTACCATTT--ATCCCATAAGCTCGTAAGC-T-TATTTTACTGAAATA
1 CTTACCATTTAAATTCCATAAGCTCGTAAGCTTATATTTTACTCAAATA
* **
1753848 CTTACCGTTTAAAATTCCATAAGCTCGTAAGCTTATATTTTTTTTCAATATA
1 CTTACCATTT-AAATTCCATAAGCTCGTAAGCTTATA-TTTTACTCAA-ATA
* *
1753900 CTTACCATTTAAATTCCATAAGCTCGTAAGC-T-TATTTTACCCATATA
1 CTTACCATTTAAATTCCATAAGCTCGTAAGCTTATATTTTACTCAAATA
* *
1753947 CTTGCCA-TT--ATTCCAAAAGCTCGTAAGCTTAT
1 CTTACCATTTAAATTCCATAAGCTCGTAAGCTTAT
1753979 TTGTATGCTT
Statistics
Matches: 110, Mismatches: 12, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
44 18 0.16
45 10 0.09
46 3 0.03
47 9 0.08
48 24 0.22
49 3 0.03
50 3 0.03
51 28 0.25
52 12 0.11
ACGTcount: A:0.31, C:0.22, G:0.09, T:0.39
Consensus pattern (49 bp):
CTTACCATTTAAATTCCATAAGCTCGTAAGCTTATATTTTACTCAAATA
Found at i:1754131 original size:39 final size:40
Alignment explanation
Indices: 1754085--1754203 Score: 208
Period size: 40 Copynumber: 3.0 Consensus size: 40
1754075 ACCGTAGTGC
1754085 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
1754125 TA-ACATAAGGTCGTGCCCACC--ATACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
*
1754162 TACACATAAGGTCGTGGCCACCATATACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
1754202 TA
1 TA
1754204 TAAACCTGCA
Statistics
Matches: 75, Mismatches: 1, Indels: 6
0.91 0.01 0.07
Matches are distributed among these distances:
37 18 0.24
38 18 0.24
39 19 0.25
40 20 0.27
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (40 bp):
TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
Found at i:1761217 original size:35 final size:38
Alignment explanation
Indices: 1761157--1761273 Score: 150
Period size: 40 Copynumber: 3.1 Consensus size: 38
1761147 ACCGTAGTGC
*
1761157 TACACATAAGGTTGTGCCCACCATATACACCGAAGTGTAT
1 TACACATAAGGATG-G-CCACCATATACACCGAAGTGTAT
*
1761197 TACACATAAGG-T-GCC-CCATATACACCGAACTGTAT
1 TACACATAAGGATGGCCACCATATACACCGAAGTGTAT
*
1761232 TACACATAAGGTCATGGCCACCATATACATCGAAGTGTAT
1 TACACATAAGG--ATGGCCACCATATACACCGAAGTGTAT
1761272 TA
1 TA
1761274 TAAACCTGCA
Statistics
Matches: 69, Mismatches: 3, Indels: 10
0.84 0.04 0.12
Matches are distributed among these distances:
35 30 0.43
36 2 0.03
37 1 0.01
38 1 0.01
39 4 0.06
40 31 0.45
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (38 bp):
TACACATAAGGATGGCCACCATATACACCGAAGTGTAT
Found at i:1764482 original size:2 final size:2
Alignment explanation
Indices: 1764475--1764504 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
1764465 TGATTTGTTC
1764475 AT AT AT AT AT AT A- AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1764505 ATTTTCCTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:1768182 original size:18 final size:18
Alignment explanation
Indices: 1768159--1768201 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
1768149 AGGGAGTAGT
1768159 GAGCTAGGCGTCCGAGAC
1 GAGCTAGGCGTCCGAGAC
*
1768177 GAGCTAGGCGTCCGAGAG
1 GAGCTAGGCGTCCGAGAC
1768195 GAGCTAG
1 GAGCTAG
1768202 CGAGCTAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.23, C:0.23, G:0.42, T:0.12
Consensus pattern (18 bp):
GAGCTAGGCGTCCGAGAC
Found at i:1779148 original size:31 final size:30
Alignment explanation
Indices: 1779113--1779199 Score: 95
Period size: 31 Copynumber: 2.8 Consensus size: 30
1779103 TCAATAAAGT
1779113 TTAAAAAATTATAAAATACTTATTAAATTTA
1 TTAAAAAATTATAAAATA-TTATTAAATTTA
* *
1779144 TTAAAAGATTATAAAATTATTAATAAATTTA
1 TTAAAAAATTATAAAA-TATTATTAAATTTA
* *
1779175 TCT-AAATACTATAAAATAATTATTA
1 T-TAAAAAATTATAAAAT-ATTATTA
1779200 TATTATCGAA
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
30 1 0.02
31 44 0.92
32 3 0.06
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.41
Consensus pattern (30 bp):
TTAAAAAATTATAAAATATTATTAAATTTA
Found at i:1779175 original size:20 final size:20
Alignment explanation
Indices: 1779108--1779175 Score: 54
Period size: 19 Copynumber: 3.5 Consensus size: 20
1779098 TTTCGTCAAT
*
1779108 AAAG-TTTAAAAAATTA-TA
1 AAAGATTTATAAAATTATTA
* * *
1779126 AAATACTTATTAAATTTATTA
1 AAAGATTTA-TAAAATTATTA
1779147 AAAGA-TTATAAAATTATTA
1 AAAGATTTATAAAATTATTA
1779166 ATAA-ATTTAT
1 A-AAGATTTAT
1779176 CTAAATACTA
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
18 3 0.08
19 15 0.38
20 15 0.38
21 6 0.15
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.41
Consensus pattern (20 bp):
AAAGATTTATAAAATTATTA
Found at i:1779325 original size:10 final size:10
Alignment explanation
Indices: 1779310--1779338 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
1779300 AAAAATGGTT
1779310 TTTTGAAGAG
1 TTTTGAAGAG
1779320 TTTTGAAGAG
1 TTTTGAAGAG
1779330 TTTTGAAGA
1 TTTTGAAGA
1779339 TATAAGTCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.28, T:0.41
Consensus pattern (10 bp):
TTTTGAAGAG
Found at i:1784290 original size:19 final size:18
Alignment explanation
Indices: 1784266--1784309 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 18
1784256 CTTTAGATTA
*
1784266 TTTATTTAATTATTTTCTT
1 TTTATTTAATTATTATC-T
*
1784285 TTTATTTAATTCTTATCT
1 TTTATTTAATTATTATCT
1784303 TTTATTT
1 TTTATTT
1784310 TAAAAACAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.73
Consensus pattern (18 bp):
TTTATTTAATTATTATCT
Found at i:1784691 original size:6 final size:6
Alignment explanation
Indices: 1784680--1784710 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
1784670 CGAATCTTTA
1784680 AATTTT AATTTT AATTTT AATTTT AATTTT A
1 AATTTT AATTTT AATTTT AATTTT AATTTT A
1784711 GAAATTAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (6 bp):
AATTTT
Found at i:1791415 original size:59 final size:59
Alignment explanation
Indices: 1791309--1791444 Score: 166
Period size: 59 Copynumber: 2.3 Consensus size: 59
1791299 AGCAGGCTGT
** * * *
1791309 ATATTCGGGAATACACTAAAGGATACCTAGTGTATATGGTGGGCACGACCTTATGTGTC
1 ATATTCGGGAATACACTAAAGGATACCTAGTACAGATGGTGGACACGACCTTATGTATC
* ** * *
1791368 ATATTCGGGACTGTACTTAAGGATACCTAGTACAGATTGTGGACACGACCTTATGTATC
1 ATATTCGGGAATACACTAAAGGATACCTAGTACAGATGGTGGACACGACCTTATGTATC
1791427 ATATTCGGG-ATAGCACTA
1 ATATTCGGGAATA-CACTA
1791445 CGGTGCTTAT
Statistics
Matches: 62, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
58 1 0.02
59 61 0.98
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (59 bp):
ATATTCGGGAATACACTAAAGGATACCTAGTACAGATGGTGGACACGACCTTATGTATC
Found at i:1791639 original size:47 final size:45
Alignment explanation
Indices: 1791545--1791670 Score: 191
Period size: 47 Copynumber: 2.8 Consensus size: 45
1791535 GTAAGCATAC
* *
1791545 AAATAAGCTTACGAGCTTTTGGAAT-AATGGCAAGTATATGGGTA
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATGGGTA
* *
1791589 AAATAAGCTTACGAGCTTATGGAATTTAAATGGTAAGTATTTTGGTA
1 AAATAAGCTTACGAGCTTATGGAA--TAAATGGTAAGTATATGGGTA
1791636 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAG
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAG
1791671 GGATTTTATA
Statistics
Matches: 75, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
44 23 0.31
45 11 0.15
46 1 0.01
47 40 0.53
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (45 bp):
AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATGGGTA
Found at i:1796366 original size:6 final size:6
Alignment explanation
Indices: 1796355--1796379 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
1796345 GAAGACCATA
1796355 GGTCAT GGTCAT GGTCAT GGTCAT G
1 GGTCAT GGTCAT GGTCAT GGTCAT G
1796380 ATATAAGTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.36, T:0.32
Consensus pattern (6 bp):
GGTCAT
Found at i:1800329 original size:6 final size:6
Alignment explanation
Indices: 1800318--1800346 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
1800308 AAGACCCATA
1800318 GGTCAT GGTCAT GGTCAT GGTCAT GGTCA
1 GGTCAT GGTCAT GGTCAT GGTCAT GGTCA
1800347 CGATTATGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.17, G:0.34, T:0.31
Consensus pattern (6 bp):
GGTCAT
Found at i:1801480 original size:6 final size:6
Alignment explanation
Indices: 1801457--1801532 Score: 52
Period size: 6 Copynumber: 13.3 Consensus size: 6
1801447 ATCTTATAAG
* * * *
1801457 AAGAAA AA-AAA TAGAAA AAGAAA ATGAAA ACGAAG AAG-AA AA-AAA
1 AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA
* * * *
1801502 ATGAAA ATGAGA AAG-AA AAGAAA GAGAAA AA
1 AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AA
1801533 AAATGAGAAA
Statistics
Matches: 53, Mismatches: 13, Indels: 8
0.72 0.18 0.11
Matches are distributed among these distances:
5 14 0.26
6 39 0.74
ACGTcount: A:0.75, C:0.01, G:0.18, T:0.05
Consensus pattern (6 bp):
AAGAAA
Found at i:1801514 original size:18 final size:18
Alignment explanation
Indices: 1801493--1801550 Score: 70
Period size: 18 Copynumber: 3.4 Consensus size: 18
1801483 AAAACGAAGA
1801493 AGAAAAAAAATGAAAATG
1 AGAAAAAAAATGAAAATG
*
1801511 AGAAAGAAAA-G-AAA-G
1 AGAAAAAAAATGAAAATG
1801526 AGAAAAAAAATGAGAAATG
1 AGAAAAAAAATGA-AAATG
1801545 A-AAAAA
1 AGAAAAA
1801551 CAATATTTCA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
15 10 0.29
16 4 0.12
17 1 0.03
18 17 0.50
19 2 0.06
ACGTcount: A:0.74, C:0.00, G:0.19, T:0.07
Consensus pattern (18 bp):
AGAAAAAAAATGAAAATG
Found at i:1801517 original size:22 final size:23
Alignment explanation
Indices: 1801472--1801524 Score: 74
Period size: 22 Copynumber: 2.3 Consensus size: 23
1801462 AAAAAATAGA
1801472 AAAAGAAAATGAAAACGAAGAAG
1 AAAAGAAAATGAAAACGAAGAAG
*
1801495 AAAA-AAAATGAAAATG-AGAAAG
1 AAAAGAAAATGAAAACGAAG-AAG
1801517 AAAAGAAA
1 AAAAGAAA
1801525 GAGAAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
21 2 0.07
22 18 0.67
23 7 0.26
ACGTcount: A:0.74, C:0.02, G:0.19, T:0.06
Consensus pattern (23 bp):
AAAAGAAAATGAAAACGAAGAAG
Found at i:1801522 original size:27 final size:28
Alignment explanation
Indices: 1801472--1801548 Score: 81
Period size: 27 Copynumber: 2.8 Consensus size: 28
1801462 AAAAAATAGA
*
1801472 AAAAGAAAATGA-AAACGAAGAAGAAA-A-
1 AAAA-AAAATGAGAAATGAA-AAGAAAGAG
1801499 AAAATGAAAATGAGAAA-GAAAAGAAAGAG
1 AAAA--AAAATGAGAAATGAAAAGAAAGAG
1801528 AAAAAAAATGAGAAATGAAAA
1 AAAAAAAATGAGAAATGAAAA
1801549 AACAATATTT
Statistics
Matches: 45, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
27 21 0.47
28 17 0.38
29 7 0.16
ACGTcount: A:0.73, C:0.01, G:0.19, T:0.06
Consensus pattern (28 bp):
AAAAAAAATGAGAAATGAAAAGAAAGAG
Found at i:1801530 original size:33 final size:34
Alignment explanation
Indices: 1801454--1801548 Score: 124
Period size: 33 Copynumber: 2.8 Consensus size: 34
1801444 TATATCTTAT
*
1801454 AAGAAGAAAAAAAATAGAAAAAGAAAATGAAAACG
1 AAGAAGAAAAAAAAT-GAAAATGAAAATGAAAACG
1801489 AAGAAGAAAAAAAATGAAAATGAGAAA-GAAAA-G
1 AAGAAGAAAAAAAATGAAAATGA-AAATGAAAACG
1801522 AA-AGAGAAAAAAAATGAGAAATGAAAA
1 AAGA-AGAAAAAAAATGA-AAATGAAAA
1801549 AACAATATTT
Statistics
Matches: 56, Mismatches: 1, Indels: 8
0.86 0.02 0.12
Matches are distributed among these distances:
32 1 0.02
33 19 0.34
34 18 0.32
35 18 0.32
ACGTcount: A:0.74, C:0.01, G:0.19, T:0.06
Consensus pattern (34 bp):
AAGAAGAAAAAAAATGAAAATGAAAATGAAAACG
Found at i:1801544 original size:34 final size:37
Alignment explanation
Indices: 1801454--1801550 Score: 118
Period size: 35 Copynumber: 2.8 Consensus size: 37
1801444 TATATCTTAT
*
1801454 AAGAAGAAAAAAAAT-AGAAA-AAGAAAATGAAAACG
1 AAGAAGAAAAAAAATGAGAAATGAGAAAATGAAAACG
1801489 AAGAAGAAAAAAAATGA-AAATGAG-AAA-GAAAA-G
1 AAGAAGAAAAAAAATGAGAAATGAGAAAATGAAAACG
*
1801522 AA-AGAGAAAAAAAATGAGAAATGAAAAAA
1 AAGA-AGAAAAAAAATGAGAAATGAGAAAA
1801551 CAATATTTCA
Statistics
Matches: 55, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
32 1 0.02
33 16 0.29
34 11 0.20
35 24 0.44
36 3 0.05
ACGTcount: A:0.74, C:0.01, G:0.19, T:0.06
Consensus pattern (37 bp):
AAGAAGAAAAAAAATGAGAAATGAGAAAATGAAAACG
Found at i:1801548 original size:15 final size:14
Alignment explanation
Indices: 1801505--1801550 Score: 51
Period size: 15 Copynumber: 3.3 Consensus size: 14
1801495 AAAAAAAATG
1801505 AAAATGAGAAAGAA
1 AAAATGAGAAAGAA
*
1801519 AAGAAAGAG-AA-AA
1 AA-AATGAGAAAGAA
1801532 AAAATGAGAAATGAA
1 AAAATGAGAAA-GAA
1801547 AAAA
1 AAAA
1801551 CAATATTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
12 5 0.19
13 6 0.23
14 4 0.15
15 11 0.42
ACGTcount: A:0.74, C:0.00, G:0.20, T:0.07
Consensus pattern (14 bp):
AAAATGAGAAAGAA
Found at i:1805611 original size:47 final size:45
Alignment explanation
Indices: 1805517--1805642 Score: 191
Period size: 47 Copynumber: 2.8 Consensus size: 45
1805507 GTAAGCATAC
* *
1805517 AAATAAGCTTACGAGCTTTTGGAAT-AATGGCAAGTATATGGGTA
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATGGGTA
* *
1805561 AAATAAGCTTACGAGCTTATGGAATTTAAATGGTAAGTATTTTGGTA
1 AAATAAGCTTACGAGCTTATGGAA--TAAATGGTAAGTATATGGGTA
1805608 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAG
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAG
1805643 GGATTTTATA
Statistics
Matches: 75, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
44 23 0.31
45 11 0.15
46 1 0.01
47 40 0.53
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (45 bp):
AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATGGGTA
Found at i:1809694 original size:270 final size:263
Alignment explanation
Indices: 1809184--1809785 Score: 845
Period size: 270 Copynumber: 2.3 Consensus size: 263
1809174 ATATCCAATA
* * *
1809184 CAAAGCTCAACTTCACAACGAAA-GAGCCACGTACGATTTTGACTTCACAACGAAGGATATCGTA
1 CAAAGCTCAACTTCACAAC-AAATGAGCCACCTACGATTTCGACTTCACAACAAAGGATATCGTA
* * *
1809248 CCCAAAAGATTGACCCAACTTCACGAAGAATGAGTCATCTGTAACACAAAAACCAGTTTTATACC
65 CCCAAAAGATTGACCCAACTTCACGAAGAATGAGTCATCTATAACACAAAAACCAATTTCATACC
* * * *
1809313 AAAGTCTTCAGGTCAAATGTTAGCTTCACGACGAAGTATATTGGGCTAGAAGACGATCCAGAAGT
130 AAAGTCTTCAAGTAAAATGTTAGCTTCACGACGAAGTATATTGGGCTAAAAGACGATCCAGAAGC
1809378 GACTTTCAAATGCTTTGAGCCCGGTTTCAACTTCACGACGAAGGATATCGTGCTCAGGATTTTTC
195 GACTTTCAAATGCTTTGAGCCCGGTTTCAACTTCACGACGAAGGATATCGTGCTCAGGATTTTTC
1809443 AGTT
260 AGTT
1809447 CAAAGCTCAACTTCACAACAAATGAGCCACCTACGATTTCGACTTCACAACAAAGGATATCGTAC
1 CAAAGCTCAACTTCACAACAAATGAGCCACCTACGATTTCGACTTCACAACAAAGGATATCGTAC
* * *
1809512 ATC-AAAGATTGACCCAACTTCATGATGAATGAGTCATCTATAACACAACAATAAAAAACCAATT
66 -CCAAAAGATTGACCCAACTTCACGAAGAATGAGTCATCTAT-A-AC-AC----AAAAACCAATT
* * *
1809576 TCATACCAAAGTCTTCAAGTAAAAT-TTCAGCTTCACGATGATGTATATTGGGCTAAAAGATGAT
123 TCATACCAAAGTCTTCAAGTAAAATGTT-AGCTTCACGACGAAGTATATTGGGCTAAAAGACGAT
* * *
1809640 CCAGGAGCGACTTTCCAATGCTTTGAGCCTGGTTTCAACTTCACGACGAAGGATATCGTGCTCAG
187 CCAGAAGCGACTTTCAAATGCTTTGAGCCCGGTTTCAACTTCACGACGAAGGATATCGTGCTCAG
1809705 GATTTTTCAGTT
252 GATTTTTCAGTT
* * * *
1809717 CAAAGCTCAACTTCACAACGAATGAGCCA-CTCACGATTTCAAGTTCACGAA-TAAGGATATCGT
1 CAAAGCTCAACTTCACAACAAATGAGCCACCT-ACGATTTCGACTTCAC-AACAAAGGATATCGT
*
1809780 GCCCAA
64 ACCCAA
1809786 TGGATCGACT
Statistics
Matches: 301, Mismatches: 25, Indels: 19
0.87 0.07 0.06
Matches are distributed among these distances:
262 3 0.01
263 93 0.31
264 2 0.01
265 2 0.01
266 2 0.01
269 5 0.02
270 192 0.64
271 2 0.01
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (263 bp):
CAAAGCTCAACTTCACAACAAATGAGCCACCTACGATTTCGACTTCACAACAAAGGATATCGTAC
CCAAAAGATTGACCCAACTTCACGAAGAATGAGTCATCTATAACACAAAAACCAATTTCATACCA
AAGTCTTCAAGTAAAATGTTAGCTTCACGACGAAGTATATTGGGCTAAAAGACGATCCAGAAGCG
ACTTTCAAATGCTTTGAGCCCGGTTTCAACTTCACGACGAAGGATATCGTGCTCAGGATTTTTCA
GTT
Found at i:1811019 original size:5 final size:5
Alignment explanation
Indices: 1810990--1811083 Score: 93
Period size: 5 Copynumber: 18.4 Consensus size: 5
1810980 CCATTATTTA
* * * *
1810990 TTATT TCATT ATATT TT-TC TT-TT TTATT TTATT TTGTT TTATCT TTATTT
1 TTATT TTATT TTATT TTATT TTATT TTATT TTATT TTATT TTAT-T TTA-TT
*
1811040 TCTTTT TTATT TTATT TTATT TTATT TTATT TTATTT TTATT TT
1 T-TATT TTATT TTATT TTATT TTATT TTATT TTA-TT TTATT TT
1811084 CTCTTTTAAT
Statistics
Matches: 74, Mismatches: 10, Indels: 10
0.79 0.11 0.11
Matches are distributed among these distances:
4 6 0.08
5 52 0.70
6 14 0.19
7 2 0.03
ACGTcount: A:0.16, C:0.04, G:0.01, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:1811042 original size:33 final size:32
Alignment explanation
Indices: 1810990--1811083 Score: 127
Period size: 33 Copynumber: 2.9 Consensus size: 32
1810980 CCATTATTTA
* *
1810990 TTATTTCATTATATTTTTCTTTTTTATTTTATT
1 TTATTTTATTTTA-TTTTCTTTTTTATTTTATT
*
1811023 TTGTTTTATCTTTATTTTCTTTTTTATTTTATT
1 TTATTTTAT-TTTATTTTCTTTTTTATTTTATT
*
1811056 TTATTTTATTTTATTTT-ATTTTTATTTT
1 TTATTTTATTTTATTTTCTTTTTTATTTT
1811084 CTCTTTTAAT
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
31 10 0.18
32 8 0.15
33 34 0.62
34 3 0.05
ACGTcount: A:0.16, C:0.04, G:0.01, T:0.79
Consensus pattern (32 bp):
TTATTTTATTTTATTTTCTTTTTTATTTTATT
Found at i:1811060 original size:43 final size:44
Alignment explanation
Indices: 1811009--1811112 Score: 149
Period size: 43 Copynumber: 2.3 Consensus size: 44
1810999 TATATTTTTC
*
1811009 TTTTTTATTTTATTTTGTTTTATCTTTATTTTCT-TTTT-TATT
1 TTTTTTATTTTATTTTATTTTATCTTTATTTTCTCTTTTATATT
*
1811051 TTATTTTATTTTATTTTATTTTATTTTTATTTTCTCTTTTAATATT
1 TT-TTTTATTTTATTTTATTTTATCTTTATTTTCTCTTTT-ATATT
1811097 TTTTTATATTTTATTT
1 TTTTT-TATTTTATTT
1811113 CTTTTCTTAA
Statistics
Matches: 55, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
42 2 0.04
43 30 0.55
44 4 0.07
45 3 0.05
46 16 0.29
ACGTcount: A:0.16, C:0.04, G:0.01, T:0.79
Consensus pattern (44 bp):
TTTTTTATTTTATTTTATTTTATCTTTATTTTCTCTTTTATATT
Found at i:1811126 original size:29 final size:29
Alignment explanation
Indices: 1811042--1811112 Score: 80
Period size: 30 Copynumber: 2.6 Consensus size: 29
1811032 CTTTATTTTC
*
1811042 TTTTTTA-TTTTA-TTT-TATTTT-AT-T
1 TTTTTTATTTTTATTTTCTCTTTTAATAT
1811066 TTATTTTATTTTTATTTTCTCTTTTAATAT
1 TT-TTTTATTTTTATTTTCTCTTTTAATAT
1811096 TTTTTTATATTTTATTT
1 TTTTTTAT-TTTTATTT
1811113 CTTTTCTTAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
24 2 0.05
25 5 0.13
26 5 0.13
27 3 0.08
28 5 0.13
29 8 0.21
30 11 0.28
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (29 bp):
TTTTTTATTTTTATTTTCTCTTTTAATAT
Found at i:1812165 original size:21 final size:21
Alignment explanation
Indices: 1812084--1812162 Score: 131
Period size: 21 Copynumber: 3.7 Consensus size: 21
1812074 ACTATCGCAA
*
1812084 TGCGATTTTTCAATTTCGCGT
1 TGCGATTTTCCAATTTCGCGT
1812105 TGCGATTTTCCAATTTCGCGT
1 TGCGATTTTCCAATTTCGCGT
*
1812126 TGCGATTTTCCAATTTCGCGC
1 TGCGATTTTCCAATTTCGCGT
1812147 TGCGATTTTCCCAATT
1 TGCGATTTT-CCAATT
1812163 CGCAATGCGA
Statistics
Matches: 55, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
21 49 0.89
22 6 0.11
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.43
Consensus pattern (21 bp):
TGCGATTTTCCAATTTCGCGT
Found at i:1812171 original size:21 final size:21
Alignment explanation
Indices: 1812078--1812172 Score: 120
Period size: 21 Copynumber: 4.5 Consensus size: 21
1812068 ATTATGACTA
* *
1812078 TCGCAATGCGATTTTTCAATT
1 TCGCGATGCGATTTTCCAATT
*
1812099 TCGCGTTGCGATTTTCCAATT
1 TCGCGATGCGATTTTCCAATT
*
1812120 TCGCGTTGCGATTTTCCAATT
1 TCGCGATGCGATTTTCCAATT
*
1812141 TCGCGCTGCGATTTTCCCAA-T
1 TCGCGATGCGATTTT-CCAATT
*
1812162 TCGCAATGCGA
1 TCGCGATGCGA
1812173 ATAAGTAAAT
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
21 63 0.94
22 4 0.06
ACGTcount: A:0.18, C:0.25, G:0.19, T:0.38
Consensus pattern (21 bp):
TCGCGATGCGATTTTCCAATT
Found at i:1812172 original size:42 final size:42
Alignment explanation
Indices: 1812078--1812172 Score: 138
Period size: 42 Copynumber: 2.3 Consensus size: 42
1812068 ATTATGACTA
* *
1812078 TCGCAATGCGATTTTTCAATTTCGCGTTGCGATTTTCCAATT
1 TCGCAATGCGATTTTCCAATTTCGCGCTGCGATTTTCCAATT
**
1812120 TCGCGTTGCGATTTTCCAATTTCGCGCTGCGATTTTCCCAA-T
1 TCGCAATGCGATTTTCCAATTTCGCGCTGCGATTTT-CCAATT
1812162 TCGCAATGCGA
1 TCGCAATGCGA
1812173 ATAAGTAAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 42 0.91
43 4 0.09
ACGTcount: A:0.18, C:0.25, G:0.19, T:0.38
Consensus pattern (42 bp):
TCGCAATGCGATTTTCCAATTTCGCGCTGCGATTTTCCAATT
Found at i:1812187 original size:20 final size:21
Alignment explanation
Indices: 1812162--1812213 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
1812152 TTTTCCCAAT
*
1812162 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
**
1812182 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTAAGAAAA
1812203 TCGCAATGCGA
1 TCGCAATGCGA
1812214 TACTGACTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.21
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:1812227 original size:20 final size:20
Alignment explanation
Indices: 1812202--1812336 Score: 128
Period size: 20 Copynumber: 6.7 Consensus size: 20
1812192 AATTTGGAAA
*
1812202 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
1812222 ATCGCAACGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
*
1812243 ATCGCAACGTGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
1812263 TTCACAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * *
1812283 TTCACAACGCGATTCTGACT
1 ATCGCAACGCGATACTGACT
* * *
1812303 TTCGCAACGAGATTCTGACT
1 ATCGCAACGCGATACTGACT
*
1812323 ATCGCAACGAGATA
1 ATCGCAACGCGATA
1812337 ATACAGAATC
Statistics
Matches: 98, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
19 2 0.02
20 80 0.82
21 14 0.14
22 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.24
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:1812244 original size:41 final size:41
Alignment explanation
Indices: 1812199--1812276 Score: 120
Period size: 41 Copynumber: 1.9 Consensus size: 41
1812189 GCGAATTTGG
* *
1812199 AAAATCGCAATGCGATACTGACTATCGCAACGCGATAATAC
1 AAAATCGCAACGCGATACTGACTATCACAACGCGATAATAC
* *
1812240 AAAATCGCAACGTGATACTGACTTTCACAACGCGATA
1 AAAATCGCAACGCGATACTGACTATCACAACGCGATA
1812277 CTGACTTTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.38, C:0.24, G:0.17, T:0.21
Consensus pattern (41 bp):
AAAATCGCAACGCGATACTGACTATCACAACGCGATAATAC
Found at i:1812907 original size:20 final size:20
Alignment explanation
Indices: 1812882--1812957 Score: 134
Period size: 20 Copynumber: 3.8 Consensus size: 20
1812872 CAACGGGGAA
*
1812882 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGGCT
1812902 ATCGCAACGCGAAAATGGCT
1 ATCGCAACGCGAAAATGGCT
1812922 ATCGCAACGCGAAAATGGCT
1 ATCGCAACGCGAAAATGGCT
*
1812942 ATCGCAACGAGAAAAT
1 ATCGCAACGCGAAAAT
1812958 CGCAATGCGA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 54 1.00
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.14
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGGCT
Found at i:1812909 original size:34 final size:34
Alignment explanation
Indices: 1812863--1812969 Score: 97
Period size: 40 Copynumber: 3.0 Consensus size: 34
1812853 GACATTCATT
*
1812863 TGACTATTGCAACGGGGAAATCGCAACGCGAAAA
1 TGACTATCGCAACGGGGAAATCGCAACGCGAAAA
**
1812897 TGACTATCGCAACGCGAAAATGGCTATCGCAACGCGAAAA
1 TGACTATCGCAACG-G-----GGAAATCGCAACGCGAAAA
* * * *
1812937 TGGCTATCGCAACGAGAAAATCGCAATGCGAAA
1 TGACTATCGCAACGGGGAAATCGCAACGCGAAA
1812970 TGAAAATCGC
Statistics
Matches: 58, Mismatches: 9, Indels: 12
0.73 0.11 0.15
Matches are distributed among these distances:
34 27 0.47
35 1 0.02
40 30 0.52
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.15
Consensus pattern (34 bp):
TGACTATCGCAACGGGGAAATCGCAACGCGAAAA
Found at i:1813017 original size:19 final size:19
Alignment explanation
Indices: 1812995--1813059 Score: 130
Period size: 19 Copynumber: 3.4 Consensus size: 19
1812985 TATTTTCTCG
1812995 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
1813014 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
1813033 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
1813052 TTGCGATT
1 TTGCGATT
1813060 CTCTCGTTGC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 46 1.00
ACGTcount: A:0.15, C:0.20, G:0.17, T:0.48
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:1814689 original size:40 final size:41
Alignment explanation
Indices: 1814626--1814735 Score: 132
Period size: 40 Copynumber: 2.6 Consensus size: 41
1814616 TCTGGAATGG
* * *
1814626 TGGGAGGGACCTCTTCAACGATGACAGTGGCCTCTTGAACGA-
1 TGGG-GGGA-CTCTTGAAGGATGACAGGGGCCTCTTGAACGAT
*
1814668 TGGGGGGACTCTTGAAGGATGATAGGGGCCTCTTGAACGAT
1 TGGGGGGACTCTTGAAGGATGACAGGGGCCTCTTGAACGAT
* *
1814709 TGGAGGGGACTCTTGAGGGATAACAGG
1 TGG-GGGGACTCTTGAAGGATGACAGG
1814736 TGAGTCGGGC
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
40 28 0.47
41 7 0.12
42 24 0.41
ACGTcount: A:0.24, C:0.17, G:0.37, T:0.22
Consensus pattern (41 bp):
TGGGGGGACTCTTGAAGGATGACAGGGGCCTCTTGAACGAT
Found at i:1814700 original size:21 final size:20
Alignment explanation
Indices: 1814630--1814724 Score: 84
Period size: 21 Copynumber: 4.7 Consensus size: 20
1814620 GAATGGTGGG
* *
1814630 AGGGACCTCTTCAACGATGA
1 AGGGGCCTCTTGAACGATGA
*
1814650 CAGTGGCCTCTTGAACGATG-
1 -AGGGGCCTCTTGAACGATGA
* * *
1814670 GGGGGACTCTTGAAGGATGA
1 AGGGGCCTCTTGAACGATGA
*
1814690 TAGGGGCCTCTTGAACGATTGG
1 -AGGGGCCTCTTGAACGA-TGA
*
1814712 AGGGGACTCTTGA
1 AGGGGCCTCTTGA
1814725 GGGATAACAG
Statistics
Matches: 59, Mismatches: 12, Indels: 6
0.77 0.16 0.08
Matches are distributed among these distances:
19 15 0.25
21 42 0.71
22 2 0.03
ACGTcount: A:0.23, C:0.19, G:0.35, T:0.23
Consensus pattern (20 bp):
AGGGGCCTCTTGAACGATGA
Found at i:1815098 original size:20 final size:20
Alignment explanation
Indices: 1815073--1815145 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 20
1815063 GAATAATAGT
*
1815073 TTACTTTCGCAACACGAAAC
1 TTACTTTCGCAACACGAAAA
*
1815093 TTACTTTCGCAACGCGAAAA
1 TTACTTTCGCAACACGAAAA
* * * *
1815113 TGACTATCGCAACGCGGAAA
1 TTACTTTCGCAACACGAAAA
* *
1815133 TGACTATCGCAAC
1 TTACTTTCGCAAC
1815146 GCGGAAATGG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.22
Consensus pattern (20 bp):
TTACTTTCGCAACACGAAAA
Found at i:1815123 original size:40 final size:40
Alignment explanation
Indices: 1815079--1815164 Score: 111
Period size: 40 Copynumber: 2.1 Consensus size: 40
1815069 TAGTTTACTT
* *
1815079 TCGCAACAC-GAAACTTACTTTCGCAACGCGAAAATGACTA
1 TCGCAACACGGAAA-TGACTATCGCAACGCGAAAATGACTA
* * *
1815119 TCGCAACGCGGAAATGACTATCGCAACGCGGAAATGGCTA
1 TCGCAACACGGAAATGACTATCGCAACGCGAAAATGACTA
1815159 TCGCAA
1 TCGCAA
1815165 TGCGAAATGA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 36 0.90
41 4 0.10
ACGTcount: A:0.35, C:0.27, G:0.21, T:0.17
Consensus pattern (40 bp):
TCGCAACACGGAAATGACTATCGCAACGCGAAAATGACTA
Found at i:1815146 original size:20 final size:20
Alignment explanation
Indices: 1815099--1815185 Score: 122
Period size: 20 Copynumber: 4.4 Consensus size: 20
1815089 AAACTTACTT
*
1815099 TCGCAACGCGAAAATGACTA
1 TCGCAACGCGGAAATGACTA
1815119 TCGCAACGCGGAAATGACTA
1 TCGCAACGCGGAAATGACTA
*
1815139 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGGAAATGACTA
* **
1815159 TCGCAATGC-GAAATGAAAA
1 TCGCAACGCGGAAATGACTA
1815178 TCGCAACG
1 TCGCAACG
1815186 ACAAAATCGC
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
19 14 0.23
20 46 0.77
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (20 bp):
TCGCAACGCGGAAATGACTA
Found at i:1815193 original size:14 final size:14
Alignment explanation
Indices: 1815174--1815237 Score: 58
Period size: 14 Copynumber: 4.3 Consensus size: 14
1815164 ATGCGAAATG
1815174 AAAATCGCAACGAC
1 AAAATCGCAACGAC
* *
1815188 AAAATCGCAATGCAAAATG
1 AAAATCGCAA--C--GA-C
1815207 AAAATCGCAACGAC
1 AAAATCGCAACGAC
1815221 AAAATCGCAACG-C
1 AAAATCGCAACGAC
1815234 AAAA
1 AAAA
1815238 CACAAATCGC
Statistics
Matches: 41, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
13 5 0.12
14 22 0.54
15 1 0.02
16 1 0.02
17 1 0.02
18 1 0.02
19 10 0.24
ACGTcount: A:0.53, C:0.23, G:0.14, T:0.09
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:1815200 original size:33 final size:33
Alignment explanation
Indices: 1815158--1815237 Score: 142
Period size: 33 Copynumber: 2.4 Consensus size: 33
1815148 GGAAATGGCT
*
1815158 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCAAAATGAAAATCGCAACGACAAA
1815191 ATCGCAATGCAAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCAAAATGAAAATCGCAACGACAAA
*
1815224 ATCGCAACGCAAAA
1 ATCGCAATGCAAAA
1815238 CACAAATCGC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.50, C:0.23, G:0.16, T:0.11
Consensus pattern (33 bp):
ATCGCAATGCAAAATGAAAATCGCAACGACAAA
Found at i:1815245 original size:33 final size:33
Alignment explanation
Indices: 1815158--1815248 Score: 121
Period size: 33 Copynumber: 2.8 Consensus size: 33
1815148 GGAAATGGCT
* * *
1815158 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCAAAATCAAAATCGCAACGACAAA
* *
1815191 ATCGCAATGCAAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCAAAATCAAAATCGCAACGACAAA
1815224 ATCGCAACGCAAAA-CACAAATCGCA
1 ATCGCAACGCAAAATCA-AAATCGCA
1815249 TTGCGATTTT
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
32 1 0.02
33 53 0.98
ACGTcount: A:0.49, C:0.24, G:0.15, T:0.11
Consensus pattern (33 bp):
ATCGCAACGCAAAATCAAAATCGCAACGACAAA
Found at i:1815266 original size:19 final size:19
Alignment explanation
Indices: 1815244--1815340 Score: 97
Period size: 19 Copynumber: 5.6 Consensus size: 19
1815234 AAAACACAAA
1815244 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
* *
1815263 TCGCGTTGCGA-TTT--TG
1 TCGCATTGCGATTTTCATT
1815279 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
1815296 TCGCATTGCGA-TTT--TG
1 TCGCATTGCGATTTTCATT
1815312 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
1815329 TCGCATTGCGAT
1 TCGCATTGCGAT
1815341 AGCCATTTCC
Statistics
Matches: 63, Mismatches: 5, Indels: 20
0.72 0.06 0.23
Matches are distributed among these distances:
14 12 0.19
15 6 0.10
16 8 0.13
17 8 0.13
18 6 0.10
19 23 0.37
ACGTcount: A:0.12, C:0.20, G:0.22, T:0.46
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:1815285 original size:14 final size:14
Alignment explanation
Indices: 1815266--1815324 Score: 64
Period size: 14 Copynumber: 3.9 Consensus size: 14
1815256 TTTCATTTCG
1815266 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
1815280 CGTTGCGATTTTCATTT
1 CGTTGCGA-TTT--TGT
1815297 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
1815313 CGTTGCGATTTT
1 CGTTGCGATTTT
1815325 CATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
14 18 0.47
15 3 0.08
16 4 0.11
17 4 0.11
18 3 0.08
19 6 0.16
ACGTcount: A:0.10, C:0.17, G:0.24, T:0.49
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:1815291 original size:33 final size:33
Alignment explanation
Indices: 1815249--1815340 Score: 175
Period size: 33 Copynumber: 2.8 Consensus size: 33
1815239 ACAAATCGCA
*
1815249 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
1815282 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
1815315 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGAT
1815341 AGCCATTTCC
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 58 1.00
ACGTcount: A:0.12, C:0.18, G:0.22, T:0.48
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
Found at i:1815359 original size:20 final size:19
Alignment explanation
Indices: 1815325--1815379 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
1815315 TTGCGATTTT
*
1815325 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
1815344 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
1815364 CATTTTCGTGTTGCGA
1 CA-TTTCGCGTTGCGA
1815380 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:1815943 original size:18 final size:18
Alignment explanation
Indices: 1815920--1815967 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
1815910 CGGGTCGATC
1815920 AGGTGATGGCTCTGGGTG
1 AGGTGATGGCTCTGGGTG
*
1815938 AGGTGATAGCTCTGGGTG
1 AGGTGATGGCTCTGGGTG
1815956 AGGTGATGGCTC
1 AGGTGATGGCTC
1815968 CCGAAGTGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.15, C:0.12, G:0.46, T:0.27
Consensus pattern (18 bp):
AGGTGATGGCTCTGGGTG
Found at i:1817336 original size:20 final size:20
Alignment explanation
Indices: 1817288--1817346 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
1817278 AATAGTTTCT
* *
1817288 GAAAATGAAAATCGCAACAC
1 GAAAATGACAATCGCAACGC
1817308 GAAAATGACAATCGCAACGC
1 GAAAATGACAATCGCAACGC
** *
1817328 GAATTTGACTATCGCAACG
1 GAAAATGACAATCGCAACG
1817347 AGAGAATAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.44, C:0.22, G:0.19, T:0.15
Consensus pattern (20 bp):
GAAAATGACAATCGCAACGC
Found at i:1817637 original size:22 final size:22
Alignment explanation
Indices: 1817609--1817652 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
1817599 GATGGAGATA
1817609 GACGGATTTCG-CTGGAGATGGG
1 GACGGATTTCGTC-GGAGATGGG
*
1817631 GACGGATTTTGTCGGAGATGGG
1 GACGGATTTCGTCGGAGATGGG
1817653 TGAGAGAGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 19 0.95
23 1 0.05
ACGTcount: A:0.18, C:0.11, G:0.45, T:0.25
Consensus pattern (22 bp):
GACGGATTTCGTCGGAGATGGG
Found at i:1817869 original size:20 final size:20
Alignment explanation
Indices: 1817846--1817910 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
1817836 TATTATCTCG
*
1817846 TTGCGAAAGTCAGTATCGCA
1 TTGCGATAGTCAGTATCGCA
* * *
1817866 TTGCGATTTTGT-ATTATCGCG
1 TTGCGA--TAGTCAGTATCGCA
1817887 TTGCGATAGTCAGTATCGCA
1 TTGCGATAGTCAGTATCGCA
1817907 TTGC
1 TTGC
1817911 AATTTTCCAA
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
19 3 0.09
20 17 0.49
21 13 0.37
22 2 0.06
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.35
Consensus pattern (20 bp):
TTGCGATAGTCAGTATCGCA
Found at i:1817879 original size:41 final size:41
Alignment explanation
Indices: 1817819--1817916 Score: 151
Period size: 41 Copynumber: 2.4 Consensus size: 41
1817809 CGCTTTGAAA
* * *
1817819 ATCGCATTGTGATTATGTATTATCTCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATTTTGTATTATCGCGTTGCGAAAGTCAGT
*
1817860 ATCGCATTGCGATTTTGTATTATCGCGTTGCGATAGTCAGT
1 ATCGCATTGCGATTTTGTATTATCGCGTTGCGAAAGTCAGT
*
1817901 ATCGCATTGCAATTTT
1 ATCGCATTGCGATTTT
1817917 CCAAATTCGC
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.22, C:0.16, G:0.21, T:0.40
Consensus pattern (41 bp):
ATCGCATTGCGATTTTGTATTATCGCGTTGCGAAAGTCAGT
Found at i:1817932 original size:41 final size:41
Alignment explanation
Indices: 1817846--1817934 Score: 108
Period size: 41 Copynumber: 2.2 Consensus size: 41
1817836 TATTATCTCG
* * ** * *
1817846 TTGCGAAAGTCAGTATCGCATTGCGATTTTGTATTATCGCG
1 TTGCGATAGTCAGTATCGCATTGCAATTTTCAAATATCGCA
1817887 TTGCGATAGTCAGTATCGCATTGCAATTTTCCAAAT-TCGCA
1 TTGCGATAGTCAGTATCGCATTGCAATTTT-CAAATATCGCA
1817928 TTGCGAT
1 TTGCGAT
1817935 TTACTTATTC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
41 39 0.95
42 2 0.05
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.36
Consensus pattern (41 bp):
TTGCGATAGTCAGTATCGCATTGCAATTTTCAAATATCGCA
Found at i:1819214 original size:17 final size:18
Alignment explanation
Indices: 1819184--1819220 Score: 67
Period size: 17 Copynumber: 2.1 Consensus size: 18
1819174 TTTAGAAATT
1819184 TTAAATATTTTTTATATA
1 TTAAATATTTTTTATATA
1819202 TTAAATA-TTTTTATATA
1 TTAAATATTTTTTATATA
1819219 TT
1 TT
1819221 TTATATAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TTAAATATTTTTTATATA
Found at i:1827729 original size:31 final size:31
Alignment explanation
Indices: 1827691--1827815 Score: 225
Period size: 31 Copynumber: 4.0 Consensus size: 31
1827681 TCCGAAGGAC
*
1827691 CAGTCCATA-GATCCCGAAGAACCTAGGTAAA
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
1827722 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1827753 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1827784 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1827815 C
1 C
1827816 CCTCGACCCT
Statistics
Matches: 92, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
31 91 0.99
32 1 0.01
ACGTcount: A:0.38, C:0.24, G:0.19, T:0.18
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:1828551 original size:64 final size:65
Alignment explanation
Indices: 1828443--1828663 Score: 225
Period size: 64 Copynumber: 3.4 Consensus size: 65
1828433 TAATGAAGGT
* * ** * **
1828443 ATGCATCGATGCACTACTGATGCATCGGTGCATAAAAGGTATTCGATGTAAT-ATTATTGCTGGG
1 ATGCATCGATGCACTACTTATGCATCGATGCATAAATTGCATTCGATGTAATCATTATTAATGGG
* ** *
1828507 ATGCATCGATGCACTCCTTATGCATCGATGCACCAATTGCATTCGATGT-TTCATTATTAATGGG
1 ATGCATCGATGCACTACTTATGCATCGATGCATAAATTGCATTCGATGTAATCATTATTAATGGG
* * * * **
1828571 ATGCATCGATACACTACTTATGCATCGATGCATGAATTGCATTCGATGTATTTATT-TTAA-AAG
1 ATGCATCGATGCACTACTTATGCATCGATGCATAAATTGCATTCGATGTAATCATTATTAATGGG
* * *
1828634 AGTGCATCGATGCACTTCCTGTGCATCGAT
1 A-TGCATCGATGCACTACTTATGCATCGAT
1828664 ACACCTTCAA
Statistics
Matches: 132, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
63 3 0.02
64 124 0.94
65 5 0.04
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.33
Consensus pattern (65 bp):
ATGCATCGATGCACTACTTATGCATCGATGCATAAATTGCATTCGATGTAATCATTATTAATGGG
Found at i:1831862 original size:28 final size:31
Alignment explanation
Indices: 1831794--1831914 Score: 189
Period size: 31 Copynumber: 4.0 Consensus size: 31
1831784 CCCGAAGGAC
*
1831794 CAGTCCATA-GATCCCGAA-AACCTAGGTAAA
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
1831824 CAGTCCATATGTCCCGAAGAACATAGGT-AA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1831854 -A-TCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1831883 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1831914 C
1 C
1831915 CCTCGACCCT
Statistics
Matches: 85, Mismatches: 1, Indels: 9
0.89 0.01 0.09
Matches are distributed among these distances:
28 25 0.29
29 3 0.04
30 19 0.22
31 38 0.45
ACGTcount: A:0.39, C:0.24, G:0.18, T:0.19
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:1831888 original size:59 final size:58
Alignment explanation
Indices: 1831797--1831913 Score: 200
Period size: 59 Copynumber: 2.0 Consensus size: 58
1831787 GAAGGACCAG
*
1831797 TCCATAGATCCCGAAAACCTAGGTAAACAGTCCATATGTCCCGAAGAACATAGGTAAA
1 TCCATAGATCCCGAAAACATAGGTAAACAGTCCATATGTCCCGAAGAACATAGGTAAA
1831855 TCCATATG-TCCCGAAGAACATAGGTAAACAGTCCATATGTCCCGAAGAACATAGGTAAA
1 TCCATA-GATCCCGAA-AACATAGGTAAACAGTCCATATGTCCCGAAGAACATAGGTAAA
1831914 CCCTCGACCC
Statistics
Matches: 56, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
58 13 0.23
59 43 0.77
ACGTcount: A:0.39, C:0.23, G:0.18, T:0.20
Consensus pattern (58 bp):
TCCATAGATCCCGAAAACATAGGTAAACAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:1832691 original size:64 final size:64
Alignment explanation
Indices: 1832561--1832785 Score: 233
Period size: 64 Copynumber: 3.5 Consensus size: 64
1832551 TAATGAAGGT
* ** ** * * **
1832561 ATGCATCGATGCACTACTGATGCATCG-TGCATAAAAGGTATTCGATGTAATATTATTGTTGGG
1 ATGCATCGATGCACTACTTATGCATCGATGCACCAATTGCATTCGATGTATTATTATTAATGGG
*
1832624 ATGCATCGATGCACTCCTTATGCATCGATGCACCAATTGCATTCGATGT-TTCATTATTAATGGG
1 ATGCATCGATGCACTACTTATGCATCGATGCACCAATTGCATTCGATGTATT-ATTATTAATGGG
** **
1832688 ATGCATCGATGCACTACTTATGCATCGATGCATGAATTGCATTCGATGTATTTATT-TTAA-AAG
1 ATGCATCGATGCACTACTTATGCATCGATGCACCAATTGCATTCGATGTA-TTATTATTAATGGG
* * * *
1832751 AGTGCATCGATGCACTTCCTGTGCATCGATACACC
1 A-TGCATCGATGCACTACTTATGCATCGATGCACC
1832786 TTCAAACGAT
Statistics
Matches: 136, Mismatches: 21, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
63 28 0.21
64 103 0.76
65 3 0.02
66 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (64 bp):
ATGCATCGATGCACTACTTATGCATCGATGCACCAATTGCATTCGATGTATTATTATTAATGGG
Found at i:1833901 original size:22 final size:22
Alignment explanation
Indices: 1833858--1833901 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
1833848 TTATTTCAAC
*
1833858 ATATAATATGATAAATTTTATT
1 ATATAATATGATAAATTATATT
*
1833880 ATATAATAT-TTAAATATATATT
1 ATATAATATGATAAAT-TATATT
1833902 TCATTTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (22 bp):
ATATAATATGATAAATTATATT
Found at i:1837050 original size:689 final size:688
Alignment explanation
Indices: 1835904--1837281 Score: 2706
Period size: 689 Copynumber: 2.0 Consensus size: 688
1835894 AACAGAATAT
1835904 TCAATATCAGTATGAAAATACTAGTTTAATAAATGTTTGTGCATGTATTTAGTATTAAATAGATA
1 TCAATATCAGTATGAAAATACTAGTTTAATAAATGTTTGTGCATGTATTTAGTATTAAATAGATA
1835969 AGTGGACGAGGTGCTTCTCTAAGCAGTTACCGCAAGATTGGTTTTGCTTATAGGACAAGACACAC
66 AGTGGACGAGGTGCTTCTCTAAGCAGTTACCGCAAGATTGGTTTTGCTTATAGGACAAGACACAC
1836034 AAGGAAAATGTCACAGCATAAAAGAGCTTGGCTTCAAGTGACAATAATAGATTAAGAATTGACAA
131 AAGGAAAATGTCACAGCATAAAAGAGCTTGGCTTCAAGTGACAATAATAGATTAAGAATTGACAA
1836099 AATGTATTGTCTCACCAATAAGGAGGATCGGCAATTACAACCTGGTAATTATGCTTTAGGTCCGA
196 AATGTATTGTCTCACCAATAAGGAGGATCGGCAATTACAACCTGGTAATTATGCTTTAGGTCCGA
1836164 CGGCAAGTCTTCAGGTGGGTTGTAATCATAAAACGTAAAATCACTTCCATATTGCTCAAAACGCT
261 CGGCAAGTCTTCAGGTGGGTTGTAATCATAAAACGTAAAATCACTTCCATATTGCTCAAAACGCT
1836229 TATCATACTCCAAAAGCCGCAGAGCGATAGTAGGATCAAGTTTCTGAAAATCAAACAGAAGCAAT
326 TATCATACTCCAAAAGCCGCAGAGCGATAGTAGGATCAAGTTTCTGAAAATCAAACAGAAGCAAT
1836294 GAACCACAAAGCTTAAGTAATATCATAAACTAAAACCAAACTAACCGACATCAGTTTTAATCGAC
391 GAACCACAAAGCTTAAGTAATATCATAAACTAAAACCAAACTAACCGACATCAGTTTTAATCGAC
1836359 CTAACTGAACCTACTTAGCATTGGTGGTTTGGACAGACTTAACAAATTCTAATCAATGATCATAC
456 CTAACTGAACCTACTTAGCATTGGTGGTTTGGACAGACTTAACAAATTCTAATCAATGATCATAC
1836424 TAACTGAAATCGACAAAACCGAAGGTAT-GGTTAATTGCATTTGTTCCAAGTTCCCACCATACTG
521 TAACTGAAATCGACAAAACCGAAGGTATGGGTTAATTGCATTTGTTCCAAGTTCCCACCATACTG
1836488 TTAGATTTTCAATTCAAGAGATACATTTTCCCAACTGCATCAAGAGATTTATCAATCTGGCATTT
586 TTAGATTTTCAATTCAAGAGATACATTTTCCCAACTGCATCAAGAGATTTATCAATCTGGCATTT
1836553 AACTCTTGAAACCCC-AAAACCAATAACTAAGATAAAC
651 AACTCTTGAAACCCCAAAAACCAATAACTAAGATAAAC
1836590 TCAATATCAGTATGAAAATACTAGTTTAATAAATGTTTGTGCATGTATTTAGTATTAAATAGATA
1 TCAATATCAGTATGAAAATACTAGTTTAATAAATGTTTGTGCATGTATTTAGTATTAAATAGATA
1836655 AGTGGACGAGGTGCTTCTCTAAGCAGTTACCGCAAGATTGGTTTTGCTTATAGGACAAGACACAC
66 AGTGGACGAGGTGCTTCTCTAAGCAGTTACCGCAAGATTGGTTTTGCTTATAGGACAAGACACAC
1836720 AAGGAAAATGTCACAGCATAAAAGAGCTTGGCTTCAAGTGACAATAAATAGATTAAGAAATTGAC
131 AAGGAAAATGTCACAGCATAAAAGAGCTTGGCTTCAAGTGACAAT-AATAGATTAAG-AATTGAC
1836785 AAAATGTATTGTCTCACCAGATAAGGAGGATCGGCAATTACAACCTGGTAATTATGCTTTAGGTC
194 AAAATGTATTGTCTCACCA-ATAAGGAGGATCGGCAATTACAACCTGGTAATTATGCTTTAGGTC
1836850 CGACGGCAAGTCTTCAGGTGGGTTGTAATCATAAAACGTAAAATCACTTCCATATTGCTCAAAAC
258 CGACGGCAAGTCTTCAGGTGGGTTGTAATCATAAAACGTAAAATCACTTCCATATTGCTCAAAAC
1836915 GCTTATCATACTCCAAAAGCCGCAGAGCGATAGTAGGATCAAGTTTCTGAAAATCAAACAGAAGC
323 GCTTATCATACTCCAAAAGCCGCAGAGCGATAGTAGGATCAAGTTTCTGAAAATCAAACAGAAGC
1836980 AATGAACCACAAAGCTTAAGTAATATCATAAACTAAAACCAAACTAACCGACATCAGTTTTAATC
388 AATGAACCACAAAGCTTAAGTAATATCATAAACTAAAACCAAACTAACCGACATCAGTTTTAATC
1837045 GACCTAACTGAACCTACTTAGCATTGGTGGTTTGGACAGACTTAACAAATTCTAATCAATGATCA
453 GACCTAACTGAACCTACTTAGCATTGGTGGTTTGGACAGACTTAACAAATTCTAATCAATGATCA
1837110 TACTAACTGAAATCGACAAAACCGAAGGTATGGGTTAATTGCATTTGTTCCAAGTTCCCACCATA
518 TACTAACTGAAATCGACAAAACCGAAGGTATGGGTTAATTGCATTTGTTCCAAGTTCCCACCATA
1837175 CTGTTAGATTTTCAATTCAAGAGATACATTTTCCCAACTGCATCAAGAGATTTATCAATCTGGCA
583 CTGTTAGATTTTCAATTCAAGAGATACATTTTCCCAACTGCATCAAGAGATTTATCAATCTGGCA
1837240 TTTAACTCTTGAAACCCCAGAAAACCAATAACTAAGATAAAC
648 TTTAACTCTTGAAACCCCA-AAAACCAATAACTAAGATAAAC
1837282 ATTATAAACA
Statistics
Matches: 686, Mismatches: 0, Indels: 6
0.99 0.00 0.01
Matches are distributed among these distances:
686 175 0.26
687 11 0.02
688 26 0.04
689 336 0.49
690 116 0.17
692 22 0.03
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (688 bp):
TCAATATCAGTATGAAAATACTAGTTTAATAAATGTTTGTGCATGTATTTAGTATTAAATAGATA
AGTGGACGAGGTGCTTCTCTAAGCAGTTACCGCAAGATTGGTTTTGCTTATAGGACAAGACACAC
AAGGAAAATGTCACAGCATAAAAGAGCTTGGCTTCAAGTGACAATAATAGATTAAGAATTGACAA
AATGTATTGTCTCACCAATAAGGAGGATCGGCAATTACAACCTGGTAATTATGCTTTAGGTCCGA
CGGCAAGTCTTCAGGTGGGTTGTAATCATAAAACGTAAAATCACTTCCATATTGCTCAAAACGCT
TATCATACTCCAAAAGCCGCAGAGCGATAGTAGGATCAAGTTTCTGAAAATCAAACAGAAGCAAT
GAACCACAAAGCTTAAGTAATATCATAAACTAAAACCAAACTAACCGACATCAGTTTTAATCGAC
CTAACTGAACCTACTTAGCATTGGTGGTTTGGACAGACTTAACAAATTCTAATCAATGATCATAC
TAACTGAAATCGACAAAACCGAAGGTATGGGTTAATTGCATTTGTTCCAAGTTCCCACCATACTG
TTAGATTTTCAATTCAAGAGATACATTTTCCCAACTGCATCAAGAGATTTATCAATCTGGCATTT
AACTCTTGAAACCCCAAAAACCAATAACTAAGATAAAC
Found at i:1837808 original size:2 final size:2
Alignment explanation
Indices: 1837803--1837840 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
1837793 TTTTACTAAA
1837803 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1837841 TAAATTACAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1837890 original size:13 final size:13
Alignment explanation
Indices: 1837869--1837927 Score: 54
Period size: 13 Copynumber: 4.8 Consensus size: 13
1837859 AATTTAATTT
*
1837869 ATTTAATAATATA
1 ATTTTATAATATA
1837882 ATTTTATAA-AT-
1 ATTTTATAATATA
*
1837893 A-TTCATAATATA
1 ATTTTATAATATA
1837905 ATTTTATAA-ATA
1 ATTTTATAATATA
*
1837917 TTATTTATAAT
1 AT-TTTATAAT
1837928 CTTATAGTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
10 6 0.16
11 3 0.08
12 7 0.19
13 21 0.57
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (13 bp):
ATTTTATAATATA
Found at i:1837933 original size:21 final size:23
Alignment explanation
Indices: 1837874--1837918 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
1837864 AATTTATTTA
1837874 ATAATATAATTTTATAAATATTC
1 ATAATATAATTTTATAAATATTC
1837897 ATAATATAATTTTATAAATATT
1 ATAATATAATTTTATAAATATT
1837919 ATTTATAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (23 bp):
ATAATATAATTTTATAAATATTC
Found at i:1850838 original size:30 final size:32
Alignment explanation
Indices: 1850783--1850842 Score: 106
Period size: 31 Copynumber: 1.9 Consensus size: 32
1850773 AATTTAAGGC
1850783 AAAATGGTTTTTGGACTTGAATTGAATTTACA
1 AAAATGGTTTTTGGACTTGAATTGAATTTACA
1850815 AAAAT-GTTTTTGGACTT-AATTGAATTTA
1 AAAATGGTTTTTGGACTTGAATTGAATTTA
1850843 TTCAAAGTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
30 11 0.39
31 12 0.43
32 5 0.18
ACGTcount: A:0.35, C:0.05, G:0.17, T:0.43
Consensus pattern (32 bp):
AAAATGGTTTTTGGACTTGAATTGAATTTACA
Done.