genome.fa.s8057.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008057.1 Hibiscus syriacus cultivar Beakdansim tig00110552_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  141434

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16762--16793	3	10.7	3	100	0	64	68	0	0	31	0.90
21526--21643	27	4.4	27	80	0	101	42	14	1	41	1.55
21526--21628	54	1.9	54	84	4	136	41	15	1	40	1.58
22359--22567	46	4.5	46	92	1	339	23	22	9	44	1.82
22389--22555	20	7.4	20	70	21	109	21	25	10	43	1.84
24028--24070	21	2.0	21	86	8	61	23	6	0	69	1.12
31887--31913	11	2.5	11	100	0	54	85	7	0	7	0.75
42052--42098	22	2.1	23	84	4	60	27	6	2	63	1.30
42212--42264	20	2.7	19	88	11	72	16	24	18	39	1.91
42254--42327	21	3.5	22	80	9	91	35	10	16	37	1.83
48354--48504	46	3.3	46	91	1	232	24	21	7	45	1.78
48430--48559	66	2.0	66	93	3	226	24	23	10	42	1.84
48384--48560	20	7.9	20	70	20	111	24	22	9	44	1.82
48495--48583	46	1.9	46	95	0	160	24	19	11	44	1.83
50842--50876	14	2.5	14	100	0	70	48	14	14	22	1.79
52762--52842	38	2.2	38	84	6	103	41	25	9	22	1.84
52796--52909	44	2.6	45	77	2	131	39	26	8	25	1.85
53112--53196	44	1.9	45	92	2	145	38	23	10	27	1.87
53443--53839	200	2.0	198	87	5	570	38	14	7	39	1.75
64492--64612	61	1.9	64	91	5	203	52	17	4	25	1.65
64806--64875	23	3.0	23	78	0	68	41	20	15	22	1.90
64866--64916	19	2.4	22	72	27	56	37	19	15	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64876--64913	19	2.0	19	90	10	60	36	21	13	28	1.91
75164--75215	26	2.0	26	84	0	68	42	19	26	11	1.85
76747--76862	23	5.0	23	83	0	142	43	18	16	21	1.87
76744--76862	46	2.6	46	87	2	159	44	17	15	21	1.86
76754--76885	23	5.8	22	81	5	120	43	18	15	21	1.88
76747--76885	69	2.0	69	83	2	172	42	18	16	22	1.89
80678--80770	28	3.4	28	80	5	109	36	5	13	44	1.68
92219--92272	23	2.3	23	81	6	65	72	0	12	14	1.13
95155--95198	16	2.7	16	96	3	79	15	22	9	52	1.71
95686--95886	6	33.5	6	98	0	393	33	0	15	50	1.49
95680--95921	24	10.0	24	94	2	218	33	1	14	50	1.51
104131--104156	13	2.0	13	100	0	52	38	23	23	15	1.92
105248--105286	2	19.5	2	84	10	53	46	2	0	51	1.14
106088--106133	22	2.1	22	83	0	56	41	2	4	52	1.33
108435--108491	27	2.1	27	83	0	69	70	1	7	21	1.20
109621--109659	16	2.4	17	83	12	55	74	0	0	25	0.82
109697--109729	17	1.9	17	93	0	57	45	6	3	45	1.43
109732--110007	35	7.5	34	75	14	130	42	10	5	42	1.60
109770--109796	13	2.1	13	100	0	54	40	7	7	44	1.60
109765--110008	37	6.6	37	77	12	216	40	9	5	43	1.60
109768--110032	112	2.4	109	78	11	277	41	9	4	44	1.59
109711--110008	72	4.0	71	76	11	237	42	9	5	42	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110924--110970	13	3.8	13	72	16	55	48	6	4	40	1.48
111790--111830	21	2.0	21	85	9	57	31	17	19	31	1.95
119542--119583	15	2.8	15	82	7	50	69	0	2	28	1.01
119537--119589	19	2.8	18	80	8	52	69	0	1	28	0.99
120625--121077	45	10.2	45	79	4	357	40	18	18	22	1.91
120625--121077	135	3.4	134	76	5	427	40	18	18	22	1.91
120706--121187	45	11.1	42	74	8	251	40	19	18	22	1.92
120633--121139	174	2.9	176	78	4	459	40	18	18	22	1.91
121111--121233	38	3.2	38	84	0	147	40	16	20	22	1.91
121999--122103	41	2.6	40	79	10	115	34	23	18	23	1.96
121589--123629	512	4.0	514	83	5	2446	34	17	15	32	1.92
122515--122617	42	2.5	42	73	10	104	34	22	15	27	1.94
121589--123629	259	8.0	256	83	5	2357	34	17	15	32	1.92
123025--123117	42	2.2	41	77	7	107	35	19	19	25	1.95
122787--123526	237	3.0	236	82	9	912	35	17	15	31	1.91
123022--123629	256	2.4	256	88	2	875	33	18	16	31	1.93
123523--123629	42	2.6	41	77	2	106	29	20	20	28	1.98
138593--138645	3	17.7	3	77	14	56	69	1	0	28	0.99
138593--138645	20	2.6	21	82	5	74	69	1	0	28	0.99
138592--138647	14	4.3	13	78	13	62	69	1	0	28	0.98
139096--139189	41	2.3	41	85	5	118	23	12	14	48	1.78
140201--140244	20	2.1	21	83	4	54	25	4	4	65	1.30

Tables:   1

The End!