genome.fa.s8058.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008058.1 Hibiscus syriacus cultivar Beakdansim tig00110553_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74730

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
841--883	3	14.3	3	90	0	68	39	0	0	60	0.97
849--887	12	3.2	12	81	3	51	43	0	0	56	0.99
3931--3978	24	2.0	24	95	0	87	25	14	8	52	1.69
8107--8146	18	2.3	18	86	4	55	82	0	17	0	0.67
9095--9119	12	2.1	12	100	0	50	32	8	32	28	1.86
9469--9717	118	2.1	118	87	1	365	35	14	21	27	1.93
10495--10571	22	3.6	22	94	3	131	33	15	14	36	1.88
11219--11738	44	12.0	44	82	3	592	27	22	20	29	1.98
11243--11727	128	3.7	130	86	2	609	27	22	20	29	1.98
11219--11738	86	6.0	86	90	2	598	27	22	20	29	1.98
12047--12086	3	13.3	3	83	0	53	37	0	0	62	0.95
12040--12088	21	2.3	20	86	10	71	40	0	0	59	0.98
12052--12090	18	2.1	19	90	4	62	41	0	0	58	0.98
13042--13081	17	2.4	17	95	0	71	32	5	0	62	1.17
16366--16407	22	1.9	23	85	9	61	19	4	9	66	1.38
21821--21855	13	2.6	14	90	4	54	65	0	0	34	0.93
22554--22596	22	2.0	23	81	9	54	37	6	9	46	1.63
23957--24078	40	3.0	40	96	0	226	22	15	27	34	1.95
24176--24437	46	5.8	46	94	1	449	39	7	23	30	1.82
33357--33412	29	1.9	29	82	7	69	62	3	0	33	1.12
35085--35109	13	1.9	13	100	0	50	28	24	16	32	1.96
35734--35810	31	2.5	31	82	2	100	28	31	25	14	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35687--35810	63	2.0	63	82	6	153	26	29	27	16	1.97
36320--36368	23	2.2	21	82	13	55	30	28	4	36	1.76
36328--36373	23	2.0	23	100	0	92	26	30	4	39	1.75
36716--36790	5	13.8	5	76	15	69	8	22	50	18	1.73
36721--36791	17	3.9	17	89	10	97	9	22	49	18	1.77
36709--36773	22	3.0	22	100	0	130	9	23	49	18	1.76
36787--36863	9	8.1	9	80	7	73	28	29	27	14	1.95
36789--36866	19	4.1	19	76	14	79	29	29	24	16	1.97
43126--43202	31	2.5	31	82	2	100	28	31	25	14	1.95
43079--43202	63	2.0	63	82	6	153	26	29	27	16	1.97
43712--43760	23	2.2	22	79	10	55	32	28	2	36	1.69
43720--43765	23	2.0	23	100	0	92	26	30	4	39	1.75
44115--44172	5	10.8	5	75	14	53	8	22	50	18	1.74
44108--44172	22	3.0	22	95	0	121	10	23	47	18	1.79
44169--44235	9	7.1	9	80	8	71	29	29	26	13	1.94
44171--44225	19	2.9	19	91	0	83	30	30	23	14	1.94
44170--44257	28	3.1	28	77	12	72	31	27	25	15	1.96
44175--44258	9	8.7	10	76	12	70	32	27	23	16	1.96
44175--44257	19	4.3	19	77	11	80	32	27	24	15	1.95
44194--44257	30	2.2	28	86	5	83	32	26	25	15	1.95
45630--45703	9	8.1	9	71	12	53	18	2	5	72	1.15
45637--45727	24	3.8	23	80	11	85	15	5	5	73	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45661--45723	28	2.2	28	83	5	74	14	6	3	76	1.11
51231--51455	73	3.1	72	83	4	283	26	17	15	40	1.89
51465--51502	20	1.9	20	94	0	67	23	18	10	47	1.79
51529--51679	65	2.3	65	82	2	178	29	19	11	39	1.88
51485--51798	167	1.9	166	90	0	502	28	18	12	40	1.87
51574--51957	102	3.8	102	83	1	432	29	19	12	38	1.88
51742--51827	37	2.4	37	84	5	104	25	23	15	36	1.94
51843--51925	36	2.3	36	82	0	94	25	20	13	40	1.88
52033--52090	15	3.5	15	71	24	53	22	20	17	39	1.92
52111--52195	36	2.5	34	92	5	136	40	18	9	31	1.83
53381--53423	2	21.5	2	100	0	86	48	0	0	51	1.00
53585--53655	9	8.1	9	71	13	51	18	2	5	73	1.16
53605--53653	20	2.3	21	86	6	64	18	2	6	73	1.14
53614--53677	24	2.6	25	83	13	80	14	4	3	78	1.04
61332--61407	30	2.5	31	75	25	90	55	13	7	23	1.64
61492--61556	30	2.2	30	82	0	76	50	9	10	29	1.68
62203--62236	16	2.1	16	94	0	59	73	0	2	23	0.97
64801--64853	23	2.3	23	90	6	81	54	7	3	33	1.46

Tables:   1

The End!