genome.fa.s8059.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008059.1 Hibiscus syriacus cultivar Beakdansim tig00110554_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  130087

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10396--10445	25	2.0	25	84	4	64	40	4	2	54	1.31
10750--10776	14	1.9	14	100	0	54	37	3	0	59	1.15
13686--13716	16	1.9	16	100	0	62	51	16	25	6	1.68
22644--22920	89	3.1	88	87	5	371	32	19	19	28	1.96
22853--22988	68	2.0	68	94	0	236	30	16	21	31	1.95
22921--23445	89	5.9	89	82	5	578	29	17	20	32	1.95
22764--23077	157	2.0	157	89	0	475	31	17	21	29	1.96
22683--23166	246	2.0	246	87	2	704	30	18	20	30	1.96
23112--23252	47	3.1	47	62	25	104	29	17	19	32	1.95
22929--23433	267	1.9	267	83	6	657	29	16	20	32	1.95
23487--23671	86	2.2	81	89	4	280	39	18	16	25	1.91
23718--23899	81	2.2	82	86	4	253	37	20	21	20	1.94
24026--24076	3	17.0	3	91	0	84	33	3	0	62	1.13
38867--38918	20	2.6	20	93	0	86	25	26	25	23	2.00
39902--39933	11	2.9	11	95	0	55	28	15	9	46	1.77
43343--43401	19	3.2	19	68	20	52	49	23	1	25	1.60
45127--45162	3	12.3	3	94	5	65	30	0	0	69	0.89
48763--48984	58	3.8	58	95	0	390	37	10	18	33	1.86
49447--49793	45	8.4	45	70	19	274	33	11	25	29	1.91
49496--49714	34	5.8	34	68	21	132	34	10	25	29	1.90
49438--49759	79	4.1	79	90	1	502	34	10	25	29	1.90
50048--50157	58	1.9	58	100	0	220	41	5	24	28	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50048--50157	29	3.8	29	93	0	193	41	5	24	28	1.77
52475--53422	479	2.0	479	100	0	1896	39	11	19	29	1.87
54663--54878	58	3.7	58	91	0	342	38	9	17	33	1.83
55142--55364	45	5.5	42	72	22	199	32	12	26	28	1.92
55132--55375	79	3.1	79	93	0	407	35	11	25	27	1.91
55187--55330	34	3.9	34	74	18	135	33	12	27	27	1.92
55616--55726	29	3.8	29	90	0	168	42	6	25	26	1.78
58579--58607	10	2.9	10	100	0	58	10	82	6	0	0.83
59806--59902	30	3.2	30	63	25	76	55	13	8	22	1.64
59792--59915	62	2.0	62	100	0	248	51	16	9	22	1.73
64477--64632	60	2.6	60	77	10	149	34	17	5	42	1.73
66212--66603	186	2.1	186	95	0	705	42	3	9	45	1.53
67283--67316	15	2.3	15	94	0	59	29	11	5	52	1.61
67517--67570	16	3.3	16	77	10	56	38	0	3	57	1.17
68115--68174	27	2.2	27	88	5	86	36	38	6	18	1.77
68978--69010	3	10.7	3	93	6	57	33	0	0	66	0.92
70671--70783	60	1.9	60	83	7	149	30	13	3	53	1.56
70981--71087	52	2.0	53	80	5	119	39	6	21	32	1.79
79573--79608	16	2.3	15	90	4	54	61	5	2	30	1.33
81040--81115	30	2.5	30	85	8	93	51	10	1	36	1.45
81102--81365	38	7.1	36	77	13	218	42	5	3	48	1.42
81119--81341	77	2.9	76	83	8	253	42	6	3	47	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81171--81369	76	2.7	73	84	7	244	44	6	2	47	1.41
81733--82744	165	6.2	163	81	7	1065	24	20	25	29	1.99
81697--82744	249	4.2	246	85	5	1180	24	20	25	29	1.99
81699--82744	84	12.8	84	77	7	1033	24	20	25	29	1.99
86146--86190	19	2.4	19	96	3	83	68	8	11	11	1.39
86890--86937	21	2.3	21	100	0	96	18	41	8	31	1.80
87988--88023	16	2.3	15	90	4	54	61	5	2	30	1.33
89372--89430	19	3.2	19	83	4	68	72	0	1	25	0.93
89374--89421	3	15.7	3	79	12	53	70	0	2	27	0.98
89481--89576	30	3.2	30	84	8	108	50	9	2	38	1.47
89543--89782	38	6.4	36	77	11	216	44	6	3	45	1.46
89548--89782	77	3.1	76	83	9	270	43	6	3	45	1.47
89612--89782	76	2.3	75	87	6	240	43	7	2	45	1.47
91654--91699	21	2.2	20	82	14	58	50	2	0	47	1.13
92043--92099	28	2.0	28	86	0	78	29	0	22	47	1.52
96385--96425	17	2.4	17	95	0	73	34	0	21	43	1.53
99664--99792	67	1.9	67	84	3	170	23	20	19	37	1.94
103984--104026	18	2.5	17	85	7	61	25	4	2	67	1.22
107111--107148	15	2.5	15	87	8	51	10	18	13	57	1.63
108329--108389	18	3.8	17	74	24	60	81	6	11	0	0.85
108337--108389	13	4.2	13	81	13	67	84	5	9	0	0.76
108322--108400	30	2.5	33	80	19	96	78	6	15	0	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108331--108389	24	2.5	24	86	13	86	84	5	10	0	0.76
108987--109030	22	2.0	22	91	8	72	38	22	11	27	1.88
109981--110240	36	7.4	36	78	10	263	27	19	13	40	1.89
110198--110372	65	2.6	65	84	4	224	33	21	9	36	1.85
110975--111424	105	4.3	105	92	2	694	32	27	18	22	1.97
112570--112612	18	2.5	17	85	7	61	25	4	2	67	1.22
113813--113870	26	2.3	26	88	5	84	24	15	39	20	1.91
114172--114701	267	2.0	267	96	0	970	37	17	20	24	1.93
127675--127736	30	2.0	32	84	12	85	32	33	0	33	1.58

Tables:   1

The End!