genome.fa.s806.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000806.1 Hibiscus syriacus cultivar Beakdansim tig00001564_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56071

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1118--1163	23	2.0	23	86	0	65	8	19	21	50	1.75
1339--1401	3	21.0	3	100	0	126	33	0	0	66	0.92
7599--7637	2	19.5	2	100	0	78	51	0	0	48	1.00
15963--16005	21	2.1	21	83	12	54	18	23	16	41	1.89
17166--17265	12	8.0	12	71	21	55	74	9	16	1	1.12
17180--17238	23	2.6	23	79	12	68	71	10	18	0	1.14
17204--17265	27	2.3	26	78	10	61	75	6	16	1	1.08
18501--18674	68	2.6	65	80	7	206	27	21	12	39	1.89
18630--18691	21	3.2	20	70	25	62	24	19	12	43	1.86
18661--18841	66	2.7	66	90	1	292	22	20	14	41	1.89
18558--18776	102	2.1	102	87	3	316	24	20	14	41	1.89
18617--18775	36	4.6	36	74	12	154	23	19	15	41	1.89
23399--23452	21	2.5	22	85	5	76	24	0	7	68	1.15
25023--25050	2	14.0	2	100	0	56	50	0	0	50	1.00
26454--26493	3	13.7	3	84	5	55	62	0	0	37	0.95
26460--26492	17	1.9	17	93	0	57	66	0	0	33	0.92
27072--27180	30	3.4	30	67	18	85	41	14	16	27	1.87
27092--27205	36	3.3	35	70	18	105	40	12	19	28	1.87
27028--27358	66	5.0	66	86	1	448	39	12	18	29	1.87
27360--27512	67	2.3	67	82	4	166	36	9	17	35	1.83
27405--27548	37	4.1	37	69	18	135	39	10	17	32	1.83
27479--27563	37	2.3	36	86	6	109	41	11	17	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37211--37259	19	2.6	19	83	0	62	28	20	18	32	1.96
45069--45100	2	16.0	2	100	0	64	50	0	0	50	1.00
54537--54587	25	2.0	27	81	14	63	37	3	25	33	1.74

Tables:   1

The End!