Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008060.1 Hibiscus syriacus cultivar Beakdansim tig00110555_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135883
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:2974 original size:8 final size:8
Alignment explanation
Indices: 2961--2999 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
2951 GAACATTTCA
*
2961 TGCATTCT
1 TGCATTTT
2969 TGCA-TTT
1 TGCATTTT
2976 TGCATTTT
1 TGCATTTT
*
2984 TGCCTTTT
1 TGCATTTT
2992 TGCATTTT
1 TGCATTTT
3000 CATCTACAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
7 6 0.22
8 21 0.78
ACGTcount: A:0.10, C:0.18, G:0.13, T:0.59
Consensus pattern (8 bp):
TGCATTTT
Found at i:4189 original size:9 final size:9
Alignment explanation
Indices: 4177--4224 Score: 62
Period size: 9 Copynumber: 5.2 Consensus size: 9
4167 ATAAAAGGGC
4177 AAAAAGAAA
1 AAAAAGAAA
4186 AAAAAGCAAA
1 AAAAAG-AAA
4196 AAAAA-AACA
1 AAAAAGAA-A
*
4205 AAAAAGAAC
1 AAAAAGAAA
4214 AAAAAGAAA
1 AAAAAGAAA
4223 AA
1 AA
4225 GAAAAAGGGA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
8 2 0.06
9 22 0.65
10 10 0.29
ACGTcount: A:0.85, C:0.06, G:0.08, T:0.00
Consensus pattern (9 bp):
AAAAAGAAA
Found at i:4189 original size:17 final size:16
Alignment explanation
Indices: 4175--4230 Score: 59
Period size: 15 Copynumber: 3.8 Consensus size: 16
4165 GAATAAAAGG
4175 GCAAAAAGAAAAAAAA
1 GCAAAAAGAAAAAAAA
*
4191 GC-AAAA-AAAAAACA
1 GCAAAAAGAAAAAAAA
*
4205 --AAAAAGAACAAAAA
1 GCAAAAAGAAAAAAAA
4219 G-AAAAAGAAAAA
1 GCAAAAAGAAAAA
4231 GGGACAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
13 4 0.12
14 13 0.39
15 14 0.42
16 2 0.06
ACGTcount: A:0.82, C:0.07, G:0.11, T:0.00
Consensus pattern (16 bp):
GCAAAAAGAAAAAAAA
Found at i:4207 original size:21 final size:22
Alignment explanation
Indices: 4177--4240 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
4167 ATAAAAGGGC
4177 AAAAAGAAAAAA-AAGCAAAAA-
1 AAAAAGAAAAAAGAA-CAAAAAG
*
4198 AAAAACAAAAAAGAACAAAAAG
1 AAAAAGAAAAAAGAACAAAAAG
* *
4220 AAAAAGAAAAAGGGACAAAAA
1 AAAAAGAAAAAAGAACAAAAA
4241 CACATGCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
21 17 0.46
22 20 0.54
ACGTcount: A:0.81, C:0.06, G:0.12, T:0.00
Consensus pattern (22 bp):
AAAAAGAAAAAAGAACAAAAAG
Found at i:4209 original size:28 final size:28
Alignment explanation
Indices: 4177--4230 Score: 83
Period size: 28 Copynumber: 1.9 Consensus size: 28
4167 ATAAAAGGGC
4177 AAAAAGAAAAAAAAGCAAAAA-AAAAACA
1 AAAAAGAAAAAAAAG-AAAAAGAAAAACA
*
4205 AAAAAGAACAAAAAGAAAAAGAAAAA
1 AAAAAGAAAAAAAAGAAAAAGAAAAA
4231 GGGACAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 5 0.21
28 19 0.79
ACGTcount: A:0.85, C:0.06, G:0.09, T:0.00
Consensus pattern (28 bp):
AAAAAGAAAAAAAAGAAAAAGAAAAACA
Found at i:4845 original size:22 final size:22
Alignment explanation
Indices: 4817--4860 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
4807 AGCTACCCCA
4817 TCAAACC-TTTGAGCATCAAATG
1 TCAAACCATTT-AGCATCAAATG
4839 TCAAACCATTTAGCATCAAATG
1 TCAAACCATTTAGCATCAAATG
4861 AACAAAAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 18 0.86
23 3 0.14
ACGTcount: A:0.39, C:0.23, G:0.11, T:0.27
Consensus pattern (22 bp):
TCAAACCATTTAGCATCAAATG
Found at i:5843 original size:36 final size:36
Alignment explanation
Indices: 5796--6047 Score: 198
Period size: 36 Copynumber: 7.4 Consensus size: 36
5786 ATTGAAAACA
* *
5796 TTTCCCTTGAAATAAATTTCGTCTCTCTTGAGATAG
1 TTTCCCTTGAAACAAATTTCGTCTCTCTTGAGACAG
*
5832 TTTCCCTTGAAACAAATTTTGTCTCTCTT--G--AG
1 TTTCCCTTGAAACAAATTTCGTCTCTCTTGAGACAG
* * *
5864 TTTCTCTTGAAA-TAATTTTGTC-CTCTTGAGACAG
1 TTTCCCTTGAAACAAATTTCGTCTCTCTTGAGACAG
* * *
5898 TTTCCCTTGAAACAAA------ATAT-TTGA-ATATG
1 TTTCCCTTGAAACAAATTTCGTCTCTCTTGAGACA-G
* * *
5927 TTTTCTTTGAAACAAATTTCGTCTCCCTTGAGACAG
1 TTTCCCTTGAAACAAATTTCGTCTCTCTTGAGACAG
* * * *
5963 TTTTCTTTGGAACTAAGTTT--TCTCTCTTGAGACA-
1 TTTCCCTTGAAAC-AAATTTCGTCTCTCTTGAGACAG
* *
5997 TTTCTCTTGAAAC-AATTTCGTCTATCTTGAGACAG
1 TTTCCCTTGAAACAAATTTCGTCTCTCTTGAGACAG
6032 TTTCCCTTGAAACAAA
1 TTTCCCTTGAAACAAA
6048 ATCTTTGAAT
Statistics
Matches: 171, Mismatches: 25, Indels: 40
0.72 0.11 0.17
Matches are distributed among these distances:
28 2 0.01
29 19 0.11
30 6 0.04
31 9 0.05
32 18 0.11
34 36 0.21
35 28 0.16
36 46 0.27
37 7 0.04
ACGTcount: A:0.26, C:0.19, G:0.13, T:0.41
Consensus pattern (36 bp):
TTTCCCTTGAAACAAATTTCGTCTCTCTTGAGACAG
Found at i:6156 original size:200 final size:200
Alignment explanation
Indices: 5793--6165 Score: 445
Period size: 200 Copynumber: 1.9 Consensus size: 200
5783 AACATTGAAA
* * **
5793 ACATTTCCCTTGAAATAAATTTCGTCTCTCTTGAGATAGTTTCCCTTGAAACAAATTTTGTCTCT
1 ACATTTCCCTTGAAATAAATTTCGTCTATCTTGAGACAGTTTCCCTTGAAACAAATTTTG-CAAT
* * * * * * *
5858 CTTGAGTTTCTCTTGAAATAATTTTGTCCTCTTGAGACAGTTTCCCTTGAAACAAAATATTTGAA
65 CTTGAGTTTCCCCTAAAACAATTTTGTCCCCTTGAGACAGTTACCCTTGAAACAAAATATTTCAA
* *
5923 TATGTTTTCTTTGAAACAAATTTCGTCTCCCTTGAGACAGTTTTCTTTGGAACTAAGTTTTCTCT
130 TATGTTTTCCTTAAAACAAATTTCGTCTCCCTTGAGACAGTTTTCTTTGGAACTAAGTTTTCTCT
5988 CTTGAG
195 CTTGAG
* *
5994 ACATTTCTCTTGAAA-CAATTTCGTCTATCTTGAGACAGTTTCCCTTGAAACAAAATCTTTG-AA
1 ACATTTCCCTTGAAATAAATTTCGTCTATCTTGAGACAGTTTCCCTTGAAAC-AAAT-TTTGCAA
*
6057 T-TT-A-TTTCCCCTAAAACAATTTTGTCTCCCTTGAGACAGTTACTCTTGAAACACAAA-ATCT
64 TCTTGAGTTTCCCCTAAAACAATTTTGTC-CCCTTGAGACAGTTACCCTTGAAACA-AAATAT-T
* * * *
6118 TCAA-ATTTTTTCCCTTAAAACATAATTTTGTTTCCCTTGAGACCGTTT
126 TCAATATGTTTT-CCTTAAAACA-AATTTCGTCTCCCTTGAGACAGTTT
6166 CTCATGAAAC
Statistics
Matches: 145, Mismatches: 20, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
197 18 0.12
198 32 0.22
199 17 0.12
200 56 0.39
201 18 0.12
202 4 0.03
ACGTcount: A:0.27, C:0.20, G:0.12, T:0.41
Consensus pattern (200 bp):
ACATTTCCCTTGAAATAAATTTCGTCTATCTTGAGACAGTTTCCCTTGAAACAAATTTTGCAATC
TTGAGTTTCCCCTAAAACAATTTTGTCCCCTTGAGACAGTTACCCTTGAAACAAAATATTTCAAT
ATGTTTTCCTTAAAACAAATTTCGTCTCCCTTGAGACAGTTTTCTTTGGAACTAAGTTTTCTCTC
TTGAG
Found at i:6174 original size:67 final size:66
Alignment explanation
Indices: 6006--6176 Score: 204
Period size: 67 Copynumber: 2.6 Consensus size: 66
5996 ATTTCTCTTG
* ** * **
6006 AAACAATTTCGTCTATCTTGAGACAGTTTCCCTTG-AA-ACAAAATCTTTGAATTTATTTCCCCT
1 AAACAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATCTTCAAATTTATTTCCCCT
6069 A
66 A
* *
6070 AAACAATTTTGTCTCCCTTGAGACAGTTACTCTTGAAACACAAAATCTTCAAATTT-TTTCCCTT
1 AAACAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATCTTCAAATTTATTTCCCCT
6134 A
66 A
* * *
6135 AAACATAATTTTGTTTCCCTTGAGACCGTTTCTCATGAAACA
1 AAAC--AATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACA
6177 ACATATATCT
Statistics
Matches: 91, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
64 30 0.33
65 14 0.15
66 15 0.16
67 32 0.35
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.37
Consensus pattern (66 bp):
AAACAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATCTTCAAATTTATTTCCCCT
A
Found at i:6964 original size:102 final size:104
Alignment explanation
Indices: 6801--7212 Score: 603
Period size: 102 Copynumber: 4.0 Consensus size: 104
6791 ATATCGTGGC
* *
6801 ACTCGAGACAACGCAAGTTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAAC-ACTTCTC
1 ACTCCAGACAACGCAAG-TTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCC
*
6865 AATTTCAGAGCCAATTTCAACTTCACAACGAAGG-ATTGG
65 AATCTCAGAGCCAATTTCAACTTCACAACGAAGGTATTGG
*
6904 ACTTCAGACAACGCAAGTTCAACTTCACGACGAA-GGACCGCTGCTTGTCAACAACAACTTCCCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCA
*
6968 ATCGCAGAGCCAATTTCAACTTCACAACGAAGGTATTGG
66 ATCTCAGAGCCAATTTCAACTTCACAACGAAGGTATTGG
* *
7007 ACTCCA-ACAATGCAAGTTCAACTTCACGACGAAGGGACCG-TTCTTGTCAACAACAACTTCCCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCA
7070 ATCTCAGAGCCAATTTCAACTTCAC-ACGAAGGATATTGG
66 ATCTCAGAGCCAATTTCAACTTCACAACGAAGG-TATTGG
*
7109 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAA-AA-TT-TC-
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCA
** ** *
7170 AT-TCAGATTCAATTTCAACTTCACGGCGGAGGATATTGG
66 ATCTCAGAGCCAATTTCAACTTCACAACGAAGG-TATTGG
7209 ACTC
1 ACTC
7213 TGAACAATGC
Statistics
Matches: 286, Mismatches: 16, Indels: 17
0.90 0.05 0.05
Matches are distributed among these distances:
99 20 0.07
100 18 0.06
101 29 0.10
102 141 0.49
103 66 0.23
104 12 0.04
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (104 bp):
ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCA
ATCTCAGAGCCAATTTCAACTTCACAACGAAGGTATTGG
Found at i:9606 original size:24 final size:26
Alignment explanation
Indices: 9552--9609 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
9542 CCGGTGGAAC
*
9552 AAAGTAGGGTGCGCTCGGGGTTTCAG
1 AAAGTAGGGTGCGCTCGAGGTTTCAG
9578 AAAGTAGGGTGCGCTC-AGG-TTCAG
1 AAAGTAGGGTGCGCTCGAGGTTTCAG
*
9602 CAAGTAGG
1 AAAGTAGG
9610 CCCATCGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 12 0.40
25 2 0.07
26 16 0.53
ACGTcount: A:0.24, C:0.16, G:0.40, T:0.21
Consensus pattern (26 bp):
AAAGTAGGGTGCGCTCGAGGTTTCAG
Found at i:23516 original size:32 final size:32
Alignment explanation
Indices: 23480--23546 Score: 93
Period size: 32 Copynumber: 2.1 Consensus size: 32
23470 GTTTTGCACA
*
23480 TCATCTTC-AATATCTTAC-CTAACACACTCCTT
1 TCATCTTCAAAT-TCTTACAC-AACAAACTCCTT
23512 TCATCTTCAAATTCTTACACAACAAACTCCTT
1 TCATCTTCAAATTCTTACACAACAAACTCCTT
23544 TCA
1 TCA
23547 GCTAACCAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
32 28 0.88
33 4 0.12
ACGTcount: A:0.31, C:0.33, G:0.00, T:0.36
Consensus pattern (32 bp):
TCATCTTCAAATTCTTACACAACAAACTCCTT
Found at i:27512 original size:17 final size:16
Alignment explanation
Indices: 27484--27532 Score: 55
Period size: 16 Copynumber: 3.0 Consensus size: 16
27474 TTTAACTTCA
*
27484 AAATTTTAAAAATTTT
1 AAATTTTTAAAATTTT
*
27500 AATATTTTTAAAA-TTC
1 AA-ATTTTTAAAATTTT
27516 AAATTTGTTAAAATTTT
1 AAATTT-TTAAAATTTT
27533 CTAAAAGTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
15 4 0.15
16 12 0.44
17 11 0.41
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (16 bp):
AAATTTTTAAAATTTT
Found at i:27520 original size:32 final size:33
Alignment explanation
Indices: 27470--27532 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
27460 AGTTTGATAT
*
27470 TATTTTTAACTTCAAAATTT-TAAAAATTTTAA
1 TATTTTTAAATTCAAAATTTGTAAAAATTTTAA
*
27502 TATTTTTAAAATTC-AAATTTGTTAAAATTTT
1 TATTTTT-AAATTCAAAATTTGTAAAAATTTT
27533 CTAAAAGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
32 13 0.48
33 14 0.52
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.52
Consensus pattern (33 bp):
TATTTTTAAATTCAAAATTTGTAAAAATTTTAA
Found at i:27567 original size:78 final size:74
Alignment explanation
Indices: 27356--27567 Score: 325
Period size: 74 Copynumber: 2.8 Consensus size: 74
27346 TCCATGTCGT
* *
27356 TTTTTTTCAAATTTGTTAAAAATTTCTAAATGTTTGATATTATTTTTAACTTAGAAATTTTAAAA
1 TTTTTTTCAAATTTGTTAAAAATTTCTAAAAGTTTGATATTATTTTTAACTTCGAAATTTTAAAA
27421 AATTTAATA
66 AATTTAATA
* *
27430 TTTTTTTCAAATTTGTTAAAAAATTCTAAAAGTTTGATATTATTTTTAACTTCAAAATTTTAAAA
1 TTTTTTTCAAATTTGTTAAAAATTTCTAAAAGTTTGATATTATTTTTAACTTCGAAATTTTAAAA
*
27495 ATTTTAATA
66 AATTTAATA
* *
27504 TTTTTAAAATTCAAATTTGTTAAAATTTTCTAAAAGTTTGATATTATTTTTAACTTCGGAATTT
1 TTTTT----TTCAAATTTGTTAAAAATTTCTAAAAGTTTGATATTATTTTTAACTTCGAAATTT
27568 ATTTTTTATT
Statistics
Matches: 125, Mismatches: 9, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
74 74 0.59
78 51 0.41
ACGTcount: A:0.38, C:0.05, G:0.06, T:0.51
Consensus pattern (74 bp):
TTTTTTTCAAATTTGTTAAAAATTTCTAAAAGTTTGATATTATTTTTAACTTCGAAATTTTAAAA
AATTTAATA
Found at i:31741 original size:53 final size:53
Alignment explanation
Indices: 31578--31742 Score: 240
Period size: 53 Copynumber: 3.1 Consensus size: 53
31568 CACCTAAGTA
* * * *
31578 CCGAAATGGTAATTCACAAACTCATTGTGAATTCTATGGATGCACATATAGTG
1 CCGAAATGGTAATTCACAAACTCATTATGAATACTATGGGTGCACACATAGTG
* *
31631 CCAAAATGGTAATTCACAAACTCATCATGAATACTATGGGTGCACACATAGTG
1 CCGAAATGGTAATTCACAAACTCATTATGAATACTATGGGTGCACACATAGTG
* * * *
31684 CCGAAATGGTAATTTAAAAACTCATTATGAATACCATGGGTGCACACATAGTT
1 CCGAAATGGTAATTCACAAACTCATTATGAATACTATGGGTGCACACATAGTG
31737 CCGAAA
1 CCGAAA
31743 GTACGCATAG
Statistics
Matches: 100, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
53 100 1.00
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.27
Consensus pattern (53 bp):
CCGAAATGGTAATTCACAAACTCATTATGAATACTATGGGTGCACACATAGTG
Found at i:32734 original size:20 final size:21
Alignment explanation
Indices: 32691--32735 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
32681 AAGCTAACTT
** *
32691 ACATCCATAAATCTCCTTATA
1 ACATCCATAAATCTCCAAAGA
32712 ACATCCA-AAATCTCCAAAGA
1 ACATCCATAAATCTCCAAAGA
32732 ACAT
1 ACAT
32736 TTAAAGCTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.44, C:0.29, G:0.02, T:0.24
Consensus pattern (21 bp):
ACATCCATAAATCTCCAAAGA
Found at i:43656 original size:11 final size:12
Alignment explanation
Indices: 43626--43659 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
43616 TTAGCATGTT
43626 TAAAAATGAAAC
1 TAAAAATGAAAC
*
43638 TTAAAATGAAA-
1 TAAAAATGAAAC
43649 TAAAAATGAAA
1 TAAAAATGAAA
43660 ACTTGAAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.68, C:0.03, G:0.09, T:0.21
Consensus pattern (12 bp):
TAAAAATGAAAC
Found at i:43678 original size:24 final size:24
Alignment explanation
Indices: 43626--43672 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
43616 TTAGCATGTT
43626 TAAAAATG-AAACTTAAAATGAAA
1 TAAAAATGAAAACTTAAAATGAAA
43649 TAAAAATGAAAACTTGAAAA-GAAA
1 TAAAAATGAAAACTT-AAAATGAAA
43673 AGAAAAAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 8 0.36
24 10 0.45
25 4 0.18
ACGTcount: A:0.66, C:0.04, G:0.11, T:0.19
Consensus pattern (24 bp):
TAAAAATGAAAACTTAAAATGAAA
Found at i:43683 original size:24 final size:24
Alignment explanation
Indices: 43626--43683 Score: 59
Period size: 24 Copynumber: 2.5 Consensus size: 24
43616 TTAGCATGTT
*
43626 TAAAAATG-AAACTTAAAATGAAA
1 TAAAAAAGAAAACTTAAAATGAAA
*
43649 TAAAAATGAAAACTTGAAAA-GAAA
1 TAAAAAAGAAAACTT-AAAATGAAA
43673 -AGAAAAAGAAA
1 TA-AAAAAGAAA
43684 GAACTTTATA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
23 9 0.29
24 18 0.58
25 4 0.13
ACGTcount: A:0.69, C:0.03, G:0.12, T:0.16
Consensus pattern (24 bp):
TAAAAAAGAAAACTTAAAATGAAA
Found at i:44932 original size:24 final size:24
Alignment explanation
Indices: 44904--44951 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
44894 TACACAATAT
44904 CATCAAAAGAATTAGCATTATCAA
1 CATCAAAAGAATTAGCATTATCAA
* ** *
44928 CATCAATATTATTAGCCTTATCAA
1 CATCAAAAGAATTAGCATTATCAA
44952 TAACAACATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.44, C:0.19, G:0.06, T:0.31
Consensus pattern (24 bp):
CATCAAAAGAATTAGCATTATCAA
Found at i:44962 original size:24 final size:24
Alignment explanation
Indices: 44914--44963 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
44904 CATCAAAAGA
* *
44914 ATTAGCATTATCAACATCAATATT
1 ATTAGCATTATCAACAACAACATT
* *
44938 ATTAGCCTTATCAATAACAACATT
1 ATTAGCATTATCAACAACAACATT
44962 AT
1 AT
44964 CAACATCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.42, C:0.18, G:0.04, T:0.36
Consensus pattern (24 bp):
ATTAGCATTATCAACAACAACATT
Found at i:45116 original size:24 final size:21
Alignment explanation
Indices: 45089--45139 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
45079 ATCATCAATA
45089 TTAACATTATGATCATCAACATTG
1 TTAACATTA-GA--ATCAACATTG
* *
45113 TTAATATTAGAATCACCATTG
1 TTAACATTAGAATCAACATTG
45134 TTAACA
1 TTAACA
45140 AAATTTTCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 14 0.58
23 2 0.08
24 8 0.33
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (21 bp):
TTAACATTAGAATCAACATTG
Found at i:45717 original size:51 final size:50
Alignment explanation
Indices: 45609--45724 Score: 135
Period size: 51 Copynumber: 2.3 Consensus size: 50
45599 TATGGTATGA
* * **
45609 AAAAGAATACTTAAAGAATATTTAATAAATTGAAGAACGAATTGATGTTG
1 AAAAGAAAAGTTAAAGAATATTTAATAAATTGAAGAACGAATTGACATTG
* *
45659 AAGAAGAAAAGTTAAAGAA-ATTTTAAATAAATTGAAGAATGGATTGACATTG
1 AA-AAGAAAAGTTAAAGAATA-TTT-AATAAATTGAAGAACGAATTGACATTG
*
45711 AAAAGAAGAGTTAA
1 AAAAGAAAAGTTAA
45725 TTTTTTTAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
50 3 0.05
51 28 0.50
52 25 0.45
ACGTcount: A:0.53, C:0.03, G:0.18, T:0.27
Consensus pattern (50 bp):
AAAAGAAAAGTTAAAGAATATTTAATAAATTGAAGAACGAATTGACATTG
Found at i:54736 original size:20 final size:21
Alignment explanation
Indices: 54711--54750 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
54701 AAAAAAATAG
*
54711 AAAAAATACAAGA-AAAAAGA
1 AAAAAAAACAAGAGAAAAAGA
*
54731 AAAAAAAACATGAGAAAAAG
1 AAAAAAAACAAGAGAAAAAG
54751 TGGAAAAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.78, C:0.05, G:0.12, T:0.05
Consensus pattern (21 bp):
AAAAAAAACAAGAGAAAAAGA
Found at i:58518 original size:91 final size:91
Alignment explanation
Indices: 58377--58553 Score: 309
Period size: 91 Copynumber: 1.9 Consensus size: 91
58367 TAATCCTAAA
* * *
58377 TATTTAATTTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTAATATGAT
1 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGAT
58442 TAGGGTAACTTGGATATAAAAAGGAT
66 TAGGGTAACTTGGATATAAAAAGGAT
*
58468 TATTAAATTCCAATTAATTAAATATATATTTAATTAATTTGAAATAATAAAAACCCTAATATGAT
1 TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGAT
*
58533 TAGGGTAACTTGGTTATAAAA
66 TAGGGTAACTTGGATATAAAA
58554 GGGTGTGTTA
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
91 81 1.00
ACGTcount: A:0.46, C:0.06, G:0.10, T:0.38
Consensus pattern (91 bp):
TATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGAT
TAGGGTAACTTGGATATAAAAAGGAT
Found at i:60534 original size:20 final size:21
Alignment explanation
Indices: 60506--60545 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
60496 CATCCAAAGA
*
60506 ACATGTTTC-TTTGAAGAGAT
1 ACATGTTTCATTTAAAGAGAT
*
60526 ACATTTTTCATTTAAAGAGA
1 ACATGTTTCATTTAAAGAGA
60546 AATGTCCTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.40
Consensus pattern (21 bp):
ACATGTTTCATTTAAAGAGAT
Found at i:61777 original size:39 final size:37
Alignment explanation
Indices: 61708--61785 Score: 88
Period size: 39 Copynumber: 2.1 Consensus size: 37
61698 AGAACTACAT
61708 GATTTAAATATTTATTTTTTATCTACCTTTTAAATTTAG
1 GATTTAAATATTTATTTTTTATCTACCTTTT--ATTTAG
* *
61747 GATTTATAT-TTTGATTATTTTAT-TATCTTTTATTTAG
1 GATTTAAATATTT-ATT-TTTTATCTACCTTTTATTTAG
61784 GA
1 GA
61786 CTTAGTTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
37 8 0.23
38 3 0.09
39 18 0.51
40 6 0.17
ACGTcount: A:0.28, C:0.05, G:0.08, T:0.59
Consensus pattern (37 bp):
GATTTAAATATTTATTTTTTATCTACCTTTTATTTAG
Found at i:63487 original size:64 final size:64
Alignment explanation
Indices: 63412--63534 Score: 160
Period size: 64 Copynumber: 1.9 Consensus size: 64
63402 GCATCAATCC
* *
63412 ATGCATCGATGCACCATT-GAATAAATT-GAACATCGAATGCATTTCATGCATTGATGCACTCTC
1 ATGCATCGATGCA-C-TTGGAATAAATTAAAACATCGAATGCATTTCATGCATCGATGCACTCTC
63475 T
64 T
** **
63476 ATGCATCGATGCACTTGGGTTTTATTAAAACATCGAATGCATTTCATGCATCGATGCAC
1 ATGCATCGATGCACTTGGAATAAATTAAAACATCGAATGCATTTCATGCATCGATGCAC
63535 AAGCAATGCA
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
62 2 0.04
63 6 0.12
64 43 0.84
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (64 bp):
ATGCATCGATGCACTTGGAATAAATTAAAACATCGAATGCATTTCATGCATCGATGCACTCTCT
Found at i:63544 original size:64 final size:64
Alignment explanation
Indices: 63440--63599 Score: 187
Period size: 64 Copynumber: 2.5 Consensus size: 64
63430 GAATAAATTG
* *** * * * * *
63440 AACATCGAATGCATTTCATGCATTGATGCACTCTCTATGCATCGATGCACT-TGGGTTTTATTAA
1 AACATCGAATGCATTTCATGCATCGATGCACAAGCAATGCACCGATGCACTCAGGCTATT-TTAA
*
63504 AACATCGAATGCATTTCATGCATCGATGCACAAGCAATGCACCGATGCACTCAGGCTATTTTCA
1 AACATCGAATGCATTTCATGCATCGATGCACAAGCAATGCACCGATGCACTCAGGCTATTTTAA
* * *
63568 AACATCGAATGTATTTTATGAATCGATGCACA
1 AACATCGAATGCATTTCATGCATCGATGCACA
63600 CTTGGTGCAC
Statistics
Matches: 82, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
64 77 0.94
65 5 0.06
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.31
Consensus pattern (64 bp):
AACATCGAATGCATTTCATGCATCGATGCACAAGCAATGCACCGATGCACTCAGGCTATTTTAA
Found at i:71076 original size:64 final size:64
Alignment explanation
Indices: 70906--71085 Score: 193
Period size: 65 Copynumber: 2.8 Consensus size: 64
70896 GAATAAATTG
** * ** * *
70906 AACATCGAATGCATTTCATGCATCGATGCAGTCTCTATGCATCGATGCACTTGGGTTTTTATTAA
1 AACATCGAATGCATTTCATGCATCGATGCACACT-TATGCACCGATGCACTCAGGATATTATTAA
* * * *
70971 AACATCGAATGCCTTTCATGCATCGATGCACAAGC-AATGCACCAATGCACTCAGGATATT-TTC
1 AACATCGAATGCATTTCATGCATCGATGCAC-A-CTTATGCACCGATGCACTCAGGATATTATTA
71034 A
64 A
* *
71035 AACATCGAATGCATTTTATGCATCGATGCACACTTGGTGCACCGATGCACT
1 AACATCGAATGCATTTCATGCATCGATGCACACTT-ATGCACCGATGCACT
71086 AAGTGTTCCA
Statistics
Matches: 95, Mismatches: 16, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
62 1 0.01
63 1 0.01
64 45 0.47
65 47 0.49
67 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (64 bp):
AACATCGAATGCATTTCATGCATCGATGCACACTTATGCACCGATGCACTCAGGATATTATTAA
Found at i:83780 original size:9 final size:9
Alignment explanation
Indices: 83766--83791 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
83756 TAAGTTTCCA
83766 TTTTATTTT
1 TTTTATTTT
83775 TTTTATTTT
1 TTTTATTTT
83784 TTTTATTT
1 TTTTATTT
83792 ACATACAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (9 bp):
TTTTATTTT
Found at i:85888 original size:20 final size:20
Alignment explanation
Indices: 85863--85923 Score: 77
Period size: 20 Copynumber: 3.0 Consensus size: 20
85853 TCAGATTGTC
85863 CAGGGGGTACAGATTCCCCA
1 CAGGGGGTACAGATTCCCCA
* *
85883 CAGGGGGAACAGATTCCCCCCC
1 CAGGGGGTACAGATT--CCCCA
*
85905 CAGGGGGTACCGATTCCCC
1 CAGGGGGTACAGATTCCCC
85924 CTGTCTAACG
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
20 18 0.51
22 17 0.49
ACGTcount: A:0.21, C:0.36, G:0.30, T:0.13
Consensus pattern (20 bp):
CAGGGGGTACAGATTCCCCA
Found at i:85908 original size:22 final size:22
Alignment explanation
Indices: 85862--85924 Score: 85
Period size: 22 Copynumber: 3.0 Consensus size: 22
85852 ATCAGATTGT
85862 CCAGGGGGTACAGATT--CCCC
1 CCAGGGGGTACAGATTCCCCCC
* *
85882 ACAGGGGGAACAGATTCCCCCC
1 CCAGGGGGTACAGATTCCCCCC
*
85904 CCAGGGGGTACCGATTCCCCC
1 CCAGGGGGTACAGATTCCCCC
85925 TGTCTAACGG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
20 14 0.39
22 22 0.61
ACGTcount: A:0.21, C:0.38, G:0.29, T:0.13
Consensus pattern (22 bp):
CCAGGGGGTACAGATTCCCCCC
Found at i:93280 original size:12 final size:12
Alignment explanation
Indices: 93263--93296 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
93253 GAATATACTC
93263 GGAAAATCTTTT
1 GGAAAATCTTTT
93275 GGAAAATCTTTT
1 GGAAAATCTTTT
93287 GGAAAATCTT
1 GGAAAATCTT
93297 AAAATTCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (12 bp):
GGAAAATCTTTT
Found at i:96593 original size:429 final size:415
Alignment explanation
Indices: 95801--96607 Score: 1112
Period size: 429 Copynumber: 1.9 Consensus size: 415
95791 TTTAGAGGTT
* **
95801 CAATCAGCATCTTCTAGAAGACGAGCAAAATTTTCTTGAATATTTAATTTGGAATTTAGTTGAGA
1 CAATCAGCATCTTCTAGAAGACGAGCAAAATTTTCTTGAATATTTAATTTAGAATTTACATGAGA
* * * * *
95866 TAAGGTTACCCGGAGATGAAGCAGAATTCAACAAGAACTACAACAATTAAATATTTTTTCTTTTG
66 TAAGATTACCAGAAGATAAAGCAAAATTCAACAAGAACTACAACAATTAAATATTTTTTCTTTTG
* *
95931 TGATAAACCATTTAAATTTAGTATTTTTAGTTTAATTATTTTATTAACTTTTATATAAGAATTAA
131 TAATAAACCATTTAAATTTAGGATTTTTAGTTTAATTATTTTATTAACTTTTATATAAGAATTAA
*
95996 TTATTTTATTTATTTAGAACTCTCGATAGGATTTTTAGTTTATTTATTTTATCATTATATTTATC
196 TTATTTTATTTATTTAGAACTCTCGATAGGATTTTTAGTTTATTTATTTTATCATTATAATTATC
* * **
96061 TTTTATTTAGGAGTTAATTATTTTATTTAATTAGAACTCTTGGGTTATAAATACCCTTTAGGTTC
261 TTTTATTTAGGAATCAATTATTTTATTTAATTAGAACTCTCAGGTTATAAATACCCTTTAGGTTC
* *
96126 AACCTTTGAACTCATTTTGAAATTTATTTTTCCTTGATTATTTAGTGAAGTTCTACTTTTGTTTC
326 AACATTTGAACTCATATTGAAATTTATTTTTCCTTGATTATTTAGTGAAGTTCTACTTTTGTTTC
96191 GTCTCATTATTTTCTTTTTGAGGCC
391 GTCTCATTATTTTCTTTTTGAGGCC
* * * * *
96216 CAATCATCATCTTCTAGAATACGAGCATAATTTTCTTGAATATTTTGATTTAGAATTTACATGGG
1 CAATCAGCATCTTCTAGAAGACGAGCAAAATTTTCTTGAATA-TTTAATTTAGAATTTACATGAG
* * * *
96281 ATAAGATTATCTAGAAGATAAAGCAAAATTCAGCAAGAACTACAAGACTTAAATATTCATTTTTT
65 ATAAGATTA-CCAGAAGATAAAGCAAAATTCAACAAGAACTACAACAATT-AA-A-T-A-TTTTT
* * *
96346 ATCTTTTTTGTAATAAACCTTTTAAATTTAGGATTTTTAGTTTGATTATTTTATTAACTTTTATT
124 -TC--TTTTGTAATAAACCATTTAAATTTAGGATTTTTAGTTTAATTATTTTATTAACTTTTATA
* * * * * *
96411 TAAGAATTAGTTGTTTTATATTTATTTGGAACTCTTGGTAGGATTTTTATCTTTTTATTT-TTTT
186 TAAGAATTAATT-ATTT-TATTTATTTAGAACTCTCGATAGGATTTTTA---GTTTATTTATTTT
* *
96475 ATCTTTATAATTATCTTTTATTTAGGAATCAATTATTTTATTTACTTAGAACTCTCAGGTTATAA
246 ATCATTATAATTATCTTTTATTTAGGAATCAATTATTTTATTTAATTAGAACTCTCAGGTTATAA
* * *
96540 ATTCTCTTTAGGTTCAACATTTGAACTCATATTGAAATTTATTTTTCCTTGATTATTTATTGAAG
311 ATACCCTTTAGGTTCAACATTTGAACTCATATTGAAATTTATTTTTCCTTGATTATTTAGTGAAG
96605 TTC
376 TTC
96608 CATCTTTCTT
Statistics
Matches: 337, Mismatches: 40, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
415 39 0.12
416 25 0.07
417 32 0.09
418 2 0.01
419 1 0.00
420 1 0.00
421 1 0.00
422 5 0.01
423 2 0.01
425 66 0.20
426 3 0.01
427 28 0.08
429 125 0.37
430 7 0.02
ACGTcount: A:0.31, C:0.11, G:0.11, T:0.47
Consensus pattern (415 bp):
CAATCAGCATCTTCTAGAAGACGAGCAAAATTTTCTTGAATATTTAATTTAGAATTTACATGAGA
TAAGATTACCAGAAGATAAAGCAAAATTCAACAAGAACTACAACAATTAAATATTTTTTCTTTTG
TAATAAACCATTTAAATTTAGGATTTTTAGTTTAATTATTTTATTAACTTTTATATAAGAATTAA
TTATTTTATTTATTTAGAACTCTCGATAGGATTTTTAGTTTATTTATTTTATCATTATAATTATC
TTTTATTTAGGAATCAATTATTTTATTTAATTAGAACTCTCAGGTTATAAATACCCTTTAGGTTC
AACATTTGAACTCATATTGAAATTTATTTTTCCTTGATTATTTAGTGAAGTTCTACTTTTGTTTC
GTCTCATTATTTTCTTTTTGAGGCC
Found at i:96653 original size:14 final size:13
Alignment explanation
Indices: 96616--96656 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
96606 TCCATCTTTC
* *
96616 TTTTATTTCTTTA
1 TTTTCTTTCATTA
96629 TTTTCTTTCATTA
1 TTTTCTTTCATTA
96642 TTTTCTTTTCATTA
1 TTTTC-TTTCATTA
96656 T
1 T
96657 GTTAAGTATG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 16 0.64
14 9 0.36
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.73
Consensus pattern (13 bp):
TTTTCTTTCATTA
Found at i:96702 original size:15 final size:15
Alignment explanation
Indices: 96679--96719 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
96669 ATAATCCATG
*
96679 CTTAACTAAACTCCA
1 CTTAGCTAAACTCCA
96694 CTTAGCTAAACTCCA
1 CTTAGCTAAACTCCA
96709 CTTAGCCTAAA
1 CTTAG-CTAAA
96720 GCTTTGCGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 19 0.79
16 5 0.21
ACGTcount: A:0.37, C:0.32, G:0.05, T:0.27
Consensus pattern (15 bp):
CTTAGCTAAACTCCA
Found at i:97301 original size:17 final size:17
Alignment explanation
Indices: 97287--97322 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
97277 CATTTATTCA
*
97287 TTATTTATTTTTATTAT
1 TTATTTACTTTTATTAT
*
97304 TTATTTACTTTTAGTAT
1 TTATTTACTTTTATTAT
97321 TT
1 TT
97323 CTAAATCCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.22, C:0.03, G:0.03, T:0.72
Consensus pattern (17 bp):
TTATTTACTTTTATTAT
Found at i:112767 original size:17 final size:18
Alignment explanation
Indices: 112745--112778 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
112735 TATGTTATTT
112745 AATTATTA-AAAATATAA
1 AATTATTATAAAATATAA
112762 AATTATTATAAAATATA
1 AATTATTATAAAATATA
112779 TTATTTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
AATTATTATAAAATATAA
Found at i:112798 original size:41 final size:42
Alignment explanation
Indices: 112724--112847 Score: 146
Period size: 41 Copynumber: 3.0 Consensus size: 42
112714 TTTACTTTTA
* *
112724 TATTATTAAAATATGTTATTTAATTA-TTAAAAATATAA-AAT
1 TATTA-TAAAATATATTATTTAATTATTTTAAAATATAATAAT
**
112765 TATTATAAAATATATTATTTAAAAATTTTAAAATATAATAAT
1 TATTATAAAATATATTATTTAATTATTTTAAAATATAATAAT
* *
112807 AATTAT-AAATATCTTATTTTAATTATTTTAAAATATTAATA
1 TATTATAAAATATATTA-TTTAATTATTTTAAAATA-TAATA
112848 TATTCAGATC
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
40 17 0.24
41 25 0.35
42 24 0.34
43 5 0.07
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.48
Consensus pattern (42 bp):
TATTATAAAATATATTATTTAATTATTTTAAAATATAATAAT
Found at i:114473 original size:30 final size:29
Alignment explanation
Indices: 114357--114496 Score: 129
Period size: 30 Copynumber: 4.6 Consensus size: 29
114347 TTGTAATTAT
* *
114357 TATTTTAGTCCTTCGAGTTTCTATTTTTTC
1 TATTTTAGTCCTT-TAATTTCTATTTTTTC
*
114387 TA-TTTAGTCCCTTATATTTCTATGTTTTTTC
1 TATTTTAGTCCTTTA-ATTTCTA--TTTTTTC
* *
114418 TATTTTAGTCCTTTAAATTCGTATTTATTC
1 TATTTTAGTCCTTTAATTTC-TATTTTTTC
* *
114448 TATTTTGGTCCTTTAAGTTTCTATTTTTCC
1 TATTTTAGTCCTTTAA-TTTCTATTTTTTC
* *
114478 CATTTTGGTCCTTGTAATT
1 TATTTTAGTCCTT-TAATT
114497 ATAAATACTT
Statistics
Matches: 92, Mismatches: 11, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
28 1 0.01
29 15 0.16
30 44 0.48
31 19 0.21
32 13 0.14
ACGTcount: A:0.16, C:0.16, G:0.09, T:0.59
Consensus pattern (29 bp):
TATTTTAGTCCTTTAATTTCTATTTTTTC
Found at i:118100 original size:18 final size:18
Alignment explanation
Indices: 118077--118131 Score: 78
Period size: 16 Copynumber: 3.1 Consensus size: 18
118067 AGAGAAAATA
*
118077 AGCAAAGGAAAAACAAAG
1 AGCAAAGAAAAAACAAAG
118095 AGCAAAGAAAAAAACAAAG
1 AGCAAAG-AAAAAACAAAG
118114 AG-AAA-AAAAAACAAAG
1 AGCAAAGAAAAAACAAAG
118130 AG
1 AG
118132 AAAATGAGCG
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
16 13 0.37
18 10 0.29
19 12 0.34
ACGTcount: A:0.73, C:0.09, G:0.18, T:0.00
Consensus pattern (18 bp):
AGCAAAGAAAAAACAAAG
Found at i:118135 original size:61 final size:61
Alignment explanation
Indices: 118060--118185 Score: 161
Period size: 61 Copynumber: 2.1 Consensus size: 61
118050 AGATCTAATC
118060 AAAACAAAGAGAAAATAAGC-AAAGGAA-A-AACAAAGAGCAAAGAAAAA-AACAAAGAGAAAAA
1 AAAACAAAGAGAAAATAAGCGAAA-GAAGAGAA-AAA-AGCAAAGAAAAAGAACAAA-AGAAAAA
* * *
118121 AAAACAAAGAGAAAATGAGCGAAAGAAGAGAAAAAATCAAAGAAAAAGAACAAAAGAAAGA
1 AAAACAAAGAGAAAATAAGCGAAAGAAGAGAAAAAAGCAAAGAAAAAGAACAAAAGAAAAA
118182 AAAA
1 AAAA
118186 GATATCAGAA
Statistics
Matches: 58, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
61 43 0.74
62 13 0.22
63 2 0.03
ACGTcount: A:0.73, C:0.07, G:0.17, T:0.02
Consensus pattern (61 bp):
AAAACAAAGAGAAAATAAGCGAAAGAAGAGAAAAAAGCAAAGAAAAAGAACAAAAGAAAAA
Found at i:119398 original size:65 final size:65
Alignment explanation
Indices: 119329--119490 Score: 186
Period size: 65 Copynumber: 2.5 Consensus size: 65
119319 CTTTGAATTA
* *
119329 TTTCCCTGGAAACAAAGTTTTTTCTCTCTTGAGATAATTTCTTTTG-AG-AAAAATCTTTGAGTC
1 TTTCCATGGAAACAAAGTTTTTTCTCTCTTGAGACAATTTCTTTTGAAGAAAAAATC--TGAGTC
119392 TG
64 TG
* * *
119394 TTTCCTTTGAAACAAAATTTTGTT-TCTCTTGAGACAATTTCTTTTGAAGAAAAAATCTGAGTCT
1 TTTCCATGGAAACAAAGTTTT-TTCTCTCTTGAGACAATTTCTTTTGAAGAAAAAATCTGAGTCT
119458 G
65 G
* * * **
119459 TTTCTATGAAAACAAAGGTTCGTCTCTCTTGA
1 TTTCCATGGAAACAAAGTTTTTTCTCTCTTGA
119491 AGCAGTTTCT
Statistics
Matches: 81, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
64 1 0.01
65 69 0.85
66 4 0.05
67 7 0.09
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.41
Consensus pattern (65 bp):
TTTCCATGGAAACAAAGTTTTTTCTCTCTTGAGACAATTTCTTTTGAAGAAAAAATCTGAGTCTG
Found at i:119630 original size:30 final size:31
Alignment explanation
Indices: 119568--119633 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
119558 AGTTTATTTG
*
119568 GAAACAAAAACTCTTTGAGTTTGTTTCTCTT
1 GAAACAAAAACTCTTTGAGTTCGTTTCTCTT
* *
119599 GAAACAAAACCATTTTTGAG-TCGTTTC-CTT
1 GAAACAAAAAC-TCTTTGAGTTCGTTTCTCTT
119629 GAAAC
1 GAAAC
119634 GAATTTTGTC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 8 0.26
31 16 0.52
32 7 0.23
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (31 bp):
GAAACAAAAACTCTTTGAGTTCGTTTCTCTT
Found at i:119951 original size:130 final size:130
Alignment explanation
Indices: 119713--119997 Score: 340
Period size: 130 Copynumber: 2.2 Consensus size: 130
119703 ATCCCTAGAG
* * * * * * * * *
119713 ATGGCATACCATCCTCATCGCATAGGAACCGTGTCATCCACTGACTAGACCACCTTATCATGTAT
1 ATGGCATGCCATCCTCATCACGTAGAAAACGTGTCATCCACTGACCAGACCACCTCATCACGTAG
** * *
119778 AAGCCATGTCACCCCTGATAATCAGTCGTCCTCATCACGTAGGAATCGTGTTATCATTCCTAAAA
66 AAGCCATGTCACCCCTGATAATCACCCGTCCTCATCACATAGGAATCGTGTTACCATTCCTAAAA
* *
119843 ATGGCATGCCATCCTCATCACGTAGAAAATGTGTCATCCCAC-GACCAGACCTCCTCATCACGTA
1 ATGGCATGCCATCCTCATCACGTAGAAAACGTGTCAT-CCACTGACCAGACCACCTCATCACGTA
*** *
119907 GAAGTTGTGTCACCCCTGAT-ATCCACCCGTCCTCATCATATAGGAATCGTGTTACCATTCCTAA
65 GAAGCCATGTCACCCCTGATAAT-CACCCGTCCTCATCACATAGGAATCGTGTTACCATTCCTAA
*
119971 AG
129 AA
* *
119973 ATGACATGTCATCCTCATCACGTAG
1 ATGGCATGCCATCCTCATCACGTAG
119998 GAGTCGTGTC
Statistics
Matches: 131, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
129 2 0.02
130 125 0.95
131 4 0.03
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (130 bp):
ATGGCATGCCATCCTCATCACGTAGAAAACGTGTCATCCACTGACCAGACCACCTCATCACGTAG
AAGCCATGTCACCCCTGATAATCACCCGTCCTCATCACATAGGAATCGTGTTACCATTCCTAAAA
Found at i:120124 original size:40 final size:42
Alignment explanation
Indices: 120068--120185 Score: 150
Period size: 42 Copynumber: 2.9 Consensus size: 42
120058 TCCTAAAGTT
* *
120068 GACCAGAACTCTTCATCACGTATGAACCGTGTCATC-CA-CC
1 GACCAGAACTCTTCATCACGTATGAGCCGTGTCATCTCAGAC
* * * * *
120108 GACCAGATCTCCTCATCATGTAGGAGCCGTGTCATCTTAGAC
1 GACCAGAACTCTTCATCACGTATGAGCCGTGTCATCTCAGAC
*
120150 GACCAGAACTCTTCATCACGTATGAGCCGTGCCATC
1 GACCAGAACTCTTCATCACGTATGAGCCGTGTCATC
120186 GCCACCAACA
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
40 31 0.48
41 1 0.02
42 32 0.50
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (42 bp):
GACCAGAACTCTTCATCACGTATGAGCCGTGTCATCTCAGAC
Found at i:120352 original size:3 final size:3
Alignment explanation
Indices: 120344--120396 Score: 97
Period size: 3 Copynumber: 17.7 Consensus size: 3
120334 AAAGATTATC
*
120344 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
120392 TTA TT
1 TTA TT
120397 TACATATATT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:120891 original size:16 final size:16
Alignment explanation
Indices: 120858--120892 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
120848 ACCCTAAAAT
*
120858 TCATATCAATCATAAA
1 TCATATCAATAATAAA
*
120874 TCATATCAATAATTAA
1 TCATATCAATAATAAA
120890 TCA
1 TCA
120893 AAAGGGGAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (16 bp):
TCATATCAATAATAAA
Found at i:124253 original size:15 final size:15
Alignment explanation
Indices: 124233--124273 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
124223 GAGTAGGCTC
124233 TTCGAGTGATGCTTG
1 TTCGAGTGATGCTTG
* *
124248 TTCGAGTGAAGTTTG
1 TTCGAGTGATGCTTG
*
124263 TTCGAATGATG
1 TTCGAGTGATG
124274 AGCATTTGAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.20, C:0.10, G:0.32, T:0.39
Consensus pattern (15 bp):
TTCGAGTGATGCTTG
Found at i:127243 original size:30 final size:30
Alignment explanation
Indices: 127177--127308 Score: 103
Period size: 30 Copynumber: 4.5 Consensus size: 30
127167 TATTTGTAAC
* * *
127177 TTCTATTTTAGTCCTCT-GAGTTTT-TTTT
1 TTCTATTTTAGTCCTTTAAATTTTTGTTTT
* *
127205 GT-TA-TTTAGTACC-TTAAGTTTTTGTTTT
1 TTCTATTTTAGT-CCTTTAAATTTTTGTTTT
* * *
127233 TTCTATTTTAGTCCTTTAAATTCTTATTTG
1 TTCTATTTTAGTCCTTTAAATTTTTGTTTT
* *
127263 TACTATTTTGGTCCTTTAAATTTTTGTTTT
1 TTCTATTTTAGTCCTTTAAATTTTTGTTTT
* * *
127293 TCCCATTTTGGTCCTT
1 TTCTATTTTAGTCCTT
127309 GTAATTATAA
Statistics
Matches: 81, Mismatches: 17, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
26 7 0.09
27 8 0.10
28 6 0.07
29 4 0.05
30 56 0.69
ACGTcount: A:0.15, C:0.14, G:0.11, T:0.61
Consensus pattern (30 bp):
TTCTATTTTAGTCCTTTAAATTTTTGTTTT
Found at i:129280 original size:42 final size:42
Alignment explanation
Indices: 129215--129324 Score: 159
Period size: 42 Copynumber: 2.6 Consensus size: 42
129205 CATCTTATCA
*
129215 AATAAGTCTCAATAAGTCTAAAATAAATAACACCATAACACC
1 AATAACTCTCAATAAGTCTAAAATAAATAACACCATAACACC
* * * * *
129257 ATTAATTCTCAATAATTCTAAAATAAATTACACCATAACACT
1 AATAACTCTCAATAAGTCTAAAATAAATAACACCATAACACC
129299 AATAACTCTCAATAAGTCT-AAATAAA
1 AATAACTCTCAATAAGTCTAAAATAAA
129325 ATCAACATCA
Statistics
Matches: 60, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
41 7 0.12
42 53 0.88
ACGTcount: A:0.51, C:0.19, G:0.03, T:0.27
Consensus pattern (42 bp):
AATAACTCTCAATAAGTCTAAAATAAATAACACCATAACACC
Found at i:132746 original size:21 final size:24
Alignment explanation
Indices: 132697--132771 Score: 84
Period size: 24 Copynumber: 3.2 Consensus size: 24
132687 GCTACTCGTT
*
132697 TAGTACCGATACTACATATAATAA
1 TAGTATCGATACTACATATAATAA
*
132721 TAGTATCGATACT-C-TA-AATGA
1 TAGTATCGATACTACATATAATAA
* * *
132742 TAGTATTGATACTACTTATAATAG
1 TAGTATCGATACTACATATAATAA
132766 TAGTAT
1 TAGTAT
132772 GCTATTTTGG
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
21 16 0.37
22 3 0.07
23 3 0.07
24 21 0.49
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (24 bp):
TAGTATCGATACTACATATAATAA
Found at i:135209 original size:134 final size:133
Alignment explanation
Indices: 134897--135621 Score: 901
Period size: 134 Copynumber: 5.5 Consensus size: 133
134887 AAATCAAACT
* * * *
134897 CAATTCAATCTTCCCTGAGTGACAGCGGAATAGATCAACATCCCCAGATCTGATATTCCCTTCAG
1 CAATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACATCCCCATATCTGATATTCCCTTCAA
** * * * *
134962 AAGAAGTGGAACAAATCCCTTTCTTCCAAGA-TTGATATTCCCTTAGTGAC-ACAGAACAAGTCT
66 AAGAAGCAGAACAGATCCCTCTCTTCCAAGATTTGATATTCCCTGAGTGACAACGGAACAAGTCT
*
135025 GCC
131 CCC
* * * * *
135028 CGATTCAATCTTCCCTGAGTGATAGTGGAATGGATCAACATCTCCATATCTGATATTCCCTTTAG
1 CAATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACATCCCCATATCTGATATTCCCTTCAA
* * *
135093 AAGAAGCAGAATAGATCCCTCTCTTCCAAGATTTAATATTCCCTGAGTGACAACAGAACAAGTCT
66 AAGAAGCAGAACAGATCCCTCTCTTCCAAGATTTGATATTCCCTGAGTGACAACGGAACAAGTCT
135158 ACCC
131 -CCC
* * *
135162 CAATTCAATCTTCTCTGAGTGACTA-TGGAATGGATCAATATCCCCATATCTGATATTCCCCTCA
1 CAATTCAATCTTCCCTGAGTGAC-AGTGGAATGGATCAACATCCCCATATCTGATATTCCCTTCA
* * *
135226 TAAGAAGCAGAACAGATCCCTCTCTTCCAAAGATTTGATATTCCCTAAGTGACAGCGGAACAAGT
65 AAAGAAGCAGAACAGATCCCTCTCTTCC-AAGATTTGATATTCCCTGAGTGACAACGGAACAAGT
135291 CTGCCC
129 CT-CCC
*
135297 CAATTCAATCTTCCCTGAGTGACA---GAATGGATCAACATCCCCAGATCTGATATTCCCTTCAA
1 CAATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACATCCCCATATCTGATATTCCCTTCAA
* *
135359 AAGAAG-AGAAACATATCCCTCTCTTCCAAGATTTTATATTCCCTGAGTGACAACGGAACAAGTC
66 AAGAAGCAG-AACAGATCCCTCTCTTCCAAGATTTGATATTCCCTGAGTGACAACGGAACAAGTC
*
135423 TGCC
130 TCCC
** * * * *
135427 TGATTCAATCTTCCCTAAGTAACAGTAGAA-GGATTCAACATCCCCAAATCTGATATTCCCTTCA
1 CAATTCAATCTTCCCTGAGTGACAGTGGAATGGA-TCAACATCCCCATATCTGATATTCCCTTCA
* * * **
135491 AAAGAAGCAGAATATATCCCTCTTTTCCAAGATTTGATATTCCCTGAGTGACAGTGGAACAAGTC
65 AAAGAAGCAGAACAGATCCCTCTCTTCCAAGATTTGATATTCCCTGAGTGACAACGGAACAAGTC
* *
135556 TGTCT
130 T-CCC
* * * *
135561 CGATTCAATCTTCCTTGAGTGACA-TCAGAATGGATCAACATCCCCATATATGATATTCCCT
1 CAATTCAATCTTCCCTGAGTGACAGT-GGAATGGATCAACATCCCCATATCTGATATTCCCT
135622 GAGTGACAGC
Statistics
Matches: 523, Mismatches: 57, Indels: 25
0.86 0.09 0.04
Matches are distributed among these distances:
130 22 0.04
131 121 0.23
132 77 0.15
133 104 0.20
134 136 0.26
135 63 0.12
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (133 bp):
CAATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACATCCCCATATCTGATATTCCCTTCAA
AAGAAGCAGAACAGATCCCTCTCTTCCAAGATTTGATATTCCCTGAGTGACAACGGAACAAGTCT
CCC
Found at i:135480 original size:399 final size:398
Alignment explanation
Indices: 134897--135620 Score: 1078
Period size: 399 Copynumber: 1.8 Consensus size: 398
134887 AAATCAAACT
*
134897 CAATTCAATCTTCCCTGAGTGACAGCGGAATAGATCAACATCCCCAGATCTGATATTCCCTTCAG
1 CAATTCAATCTTCCCTGAGTGACA--GGAATAGATCAACATCCCCAGATCTGATATTCCCTTCAA
* * * *
134962 AAGAAGTGGAACAAATCCCTTTCTTCCAAGATTGATATTCCCTTAGTGACACAGAACAAGTCTGC
64 AAGAAGAGAAACAAATCCCTCTCTTCCAAGATTGATATTCCCTGAGTGACACAGAACAAGTCTGC
* * * * * * *
135027 CCGATTCAATCTTCCCTGAGTGATAGTGGAATGGATCAACATCTCCATATCTGATATTCCCTTTA
129 CCGATTCAATCTTCCCTAAGTAACAGTAGAATGGATCAACATCCCCAAATCTGATATTCCCTTCA
*
135092 GAAGAAGCAGAATAGATCCCTCTCTTCCAAGATTTAATATTCCCTGAGTGACAACAGAACAAGTC
194 AAAGAAGCAGAATAGATCCCTCTCTTCCAAGATTTAATATTCCCTGAGTGACAACAGAACAAGTC
* * *
135157 TACCCCAATTCAATCTT-CTCTGAGTGACTAT-GGAATGGATCAATATCCCCATATCTGATATTC
259 TACCCCAATTCAATCTTCCT-TGAGTGAC-ATCAGAATGGATCAACATCCCCATATATGATATTC
135220 CCCTCATAAGAAGCAGAACAGATCCCTCTCTTCCAAAGATTTGATATTCCCTAAGTGACAGCGGA
322 CCCTCATAAGAAGCAGAACAGATCCCTCTCTTCCAAAGATTTGATATTCCCTAAGTGACAGCGGA
135285 ACAAGTCTGCCC
387 ACAAGTCTGCCC
*
135297 CAATTCAATCTTCCCTGAGTGACA-GAATGGATCAACATCCCCAGATCTGATATTCCCTTCAAAA
1 CAATTCAATCTTCCCTGAGTGACAGGAATAGATCAACATCCCCAGATCTGATATTCCCTTCAAAA
* * *
135361 GAAGAGAAACATATCCCTCTCTTCCAAGATTTTATATTCCCTGAGTGACAACGGAACAAGTCTGC
66 GAAGAGAAACAAATCCCTCTCTTCCAAGA-TTGATATTCCCTGAGTGAC-ACAGAACAAGTCTGC
*
135426 CTGATTCAATCTTCCCTAAGTAACAGTAGAA-GGATTCAACATCCCCAAATCTGATATTCCCTTC
129 CCGATTCAATCTTCCCTAAGTAACAGTAGAATGGA-TCAACATCCCCAAATCTGATATTCCCTTC
* * * ***
135490 AAAAGAAGCAGAATATATCCCTCTTTTCCAAGATTTGATATTCCCTGAGTGACAGTGGAACAAGT
193 AAAAGAAGCAGAATAGATCCCTCTCTTCCAAGATTTAATATTCCCTGAGTGACAACAGAACAAGT
** * *
135555 CTGTCTCGATTCAATCTTCCTTGAGTGACATCAGAATGGATCAACATCCCCATATATGATATTCC
258 CTACCCCAATTCAATCTTCCTTGAGTGACATCAGAATGGATCAACATCCCCATATATGATATTCC
135620 C
323 C
135621 TGAGTGACAG
Statistics
Matches: 288, Mismatches: 31, Indels: 11
0.87 0.09 0.03
Matches are distributed among these distances:
397 63 0.22
398 22 0.08
399 177 0.61
400 26 0.09
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (398 bp):
CAATTCAATCTTCCCTGAGTGACAGGAATAGATCAACATCCCCAGATCTGATATTCCCTTCAAAA
GAAGAGAAACAAATCCCTCTCTTCCAAGATTGATATTCCCTGAGTGACACAGAACAAGTCTGCCC
GATTCAATCTTCCCTAAGTAACAGTAGAATGGATCAACATCCCCAAATCTGATATTCCCTTCAAA
AGAAGCAGAATAGATCCCTCTCTTCCAAGATTTAATATTCCCTGAGTGACAACAGAACAAGTCTA
CCCCAATTCAATCTTCCTTGAGTGACATCAGAATGGATCAACATCCCCATATATGATATTCCCCT
CATAAGAAGCAGAACAGATCCCTCTCTTCCAAAGATTTGATATTCCCTAAGTGACAGCGGAACAA
GTCTGCCC
Found at i:135707 original size:264 final size:265
Alignment explanation
Indices: 134899--135621 Score: 764
Period size: 265 Copynumber: 2.7 Consensus size: 265
134889 ATCAAACTCA
* * ** * * * *
134899 ATTCAATCTTCCCTGAGTGACAGCGGAATAGA-TCAACATCCCCAGATCTGATATTCCCTTCAGA
1 ATTCAATCTTCCCTAAGTAACAGTAGAA-GGATTCAACATCCCCAAATCTGATATTCCCCTCAAA
** * * * *
134963 AGAAGTGGAACAAATCCCTTTCTTCC-AAGA-TTGATATTCCCTTAGTGACA-CAGAACAAGTCT
65 AGAAGCAGAACAGATCCCTCTCTTCCAAAGATTTGATATTCCCTAAGTGACAGCGGAACAAGTCT
* * * * *
135025 G-CCCGATTCAATCTTCCCTGAGTGATAGTGGAATGGATCAACATCTCCATATCTGATATTCCCT
130 GCCCCAATTCAATCTTCCCTGAGTGACA---GAATGGATCAACATCCCCAGATATGATATTCCCT
* * * * * * * *
135089 TTAGAAGAAGCAG-AATAGATCCCTCTCTTCCAAGATTTAATATTCCCTGAGTGACAAC-AGAAC
192 TCAAAAGAAG-AGAAACAGATCCCTCTCATCCAAGATTTCATATACCATGAGTGACAACGA-AAA
* **
135152 AAGTCTACCCCA
255 AAGTCT-GCCTG
* * * * * * *
135164 ATTCAATCTTCTCTGAGTGACTA-TGGAATGGA-TCAATATCCCCATATCTGATATTCCCCTCAT
1 ATTCAATCTTCCCTAAGTAAC-AGTAGAA-GGATTCAACATCCCCAAATCTGATATTCCCCTCAA
135227 AAGAAGCAGAACAGATCCCTCTCTTCCAAAGATTTGATATTCCCTAAGTGACAGCGGAACAAGTC
64 AAGAAGCAGAACAGATCCCTCTCTTCCAAAGATTTGATATTCCCTAAGTGACAGCGGAACAAGTC
*
135292 TGCCCCAATTCAATCTTCCCTGAGTGACAGAATGGATCAACATCCCCAGATCTGATATTCCCTTC
129 TGCCCCAATTCAATCTTCCCTGAGTGACAGAATGGATCAACATCCCCAGATATGATATTCCCTTC
* * * * * * *
135357 AAAAGAAGAGAAACATATCCCTCTCTTCCAAGATTTTATATTCCCTGAGTGACAACGGAACAAGT
194 AAAAGAAGAGAAACAGATCCCTCTCATCCAAGATTTCATATACCATGAGTGACAACGAAAAAAGT
135422 CTGCCTG
259 CTGCCTG
*
135429 ATTCAATCTTCCCTAAGTAACAGTAGAAGGATTCAACATCCCCAAATCTGATATTCCCTTCAAAA
1 ATTCAATCTTCCCTAAGTAACAGTAGAAGGATTCAACATCCCCAAATCTGATATTCCCCTCAAAA
* * * * *
135494 GAAGCAGAATATATCCCTCTTTTCC-AAGATTTGATATTCCCTGAGTGACAGTGGAACAAGTCTG
66 GAAGCAGAACAGATCCCTCTCTTCCAAAGATTTGATATTCCCTAAGTGACAGCGGAACAAGTCTG
* * * * *
135558 TCTCGATTCAATCTTCCTTGAGTGACATCAGAATGGATCAACATCCCCATATATGATATTCCCT
131 CCCCAATTCAATCTTCCCTGAGTG--A-CAGAATGGATCAACATCCCCAGATATGATATTCCCT
135622 GAGTGACAGC
Statistics
Matches: 401, Mismatches: 45, Indels: 22
0.86 0.10 0.05
Matches are distributed among these distances:
264 61 0.15
265 154 0.38
266 97 0.24
267 53 0.13
268 12 0.03
269 24 0.06
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (265 bp):
ATTCAATCTTCCCTAAGTAACAGTAGAAGGATTCAACATCCCCAAATCTGATATTCCCCTCAAAA
GAAGCAGAACAGATCCCTCTCTTCCAAAGATTTGATATTCCCTAAGTGACAGCGGAACAAGTCTG
CCCCAATTCAATCTTCCCTGAGTGACAGAATGGATCAACATCCCCAGATATGATATTCCCTTCAA
AAGAAGAGAAACAGATCCCTCTCATCCAAGATTTCATATACCATGAGTGACAACGAAAAAAGTCT
GCCTG
Done.