Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008061.1 Hibiscus syriacus cultivar Beakdansim tig00110556_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5800122
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 15 of 26
Found at i:2914793 original size:19 final size:19
Alignment explanation
Indices: 2914757--2914794 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
2914747 ATCGCAACGA
* *
2914757 GAAAATCGCAATGCGAAAT
1 GAAAATCGCAACGAGAAAT
2914776 GAAAATCGCAACGAGAAAT
1 GAAAATCGCAACGAGAAAT
2914795 CGCAATGCGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.50, C:0.16, G:0.21, T:0.13
Consensus pattern (19 bp):
GAAAATCGCAACGAGAAAT
Found at i:2914817 original size:32 final size:33
Alignment explanation
Indices: 2914728--2914804 Score: 111
Period size: 33 Copynumber: 2.4 Consensus size: 33
2914718 GCAAAAGACT
* ***
2914728 ATCGCAACGCGAAATGGCTATCGCAACGAGAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAAA
2914761 ATCGCAATGCGAAATGAAAATCGCAACGAG-AA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAAA
2914793 ATCGCAATGCGA
1 ATCGCAATGCGA
2914805 TTTTCATTTC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 14 0.35
33 26 0.65
ACGTcount: A:0.42, C:0.22, G:0.23, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAAA
Found at i:2914848 original size:20 final size:20
Alignment explanation
Indices: 2914823--2914880 Score: 107
Period size: 20 Copynumber: 2.9 Consensus size: 20
2914813 TCGCATTGCG
*
2914823 ATTTTCTCGTTGCGATAGCC
1 ATTTTCGCGTTGCGATAGCC
2914843 ATTTTCGCGTTGCGATAGCC
1 ATTTTCGCGTTGCGATAGCC
2914863 ATTTTCGCGTTGCGATAG
1 ATTTTCGCGTTGCGATAG
2914881 TCAAATGAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.16, C:0.22, G:0.24, T:0.38
Consensus pattern (20 bp):
ATTTTCGCGTTGCGATAGCC
Found at i:2915970 original size:22 final size:23
Alignment explanation
Indices: 2915929--2915972 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
2915919 AAATTTGATC
2915929 TGGTCAATACCCGGACTTTGATAT
1 TGGTCAATA-CCGGACTTTGATAT
*
2915953 TGGTCAATA-CGGATTTTGAT
1 TGGTCAATACCGGACTTTGAT
2915973 GATGTTCAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
24 9 0.47
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (23 bp):
TGGTCAATACCGGACTTTGATAT
Found at i:2916161 original size:12 final size:12
Alignment explanation
Indices: 2916144--2916168 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2916134 ATATAATCCT
2916144 GAAGAAGAAAAA
1 GAAGAAGAAAAA
2916156 GAAGAAGAAAAA
1 GAAGAAGAAAAA
2916168 G
1 G
2916169 TCCCTGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:2918482 original size:33 final size:33
Alignment explanation
Indices: 2918445--2918571 Score: 166
Period size: 33 Copynumber: 3.8 Consensus size: 33
2918435 GGAAATTACT
* *
2918445 ATCGCAATGTGAAATAAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
**
2918478 ATCGCAATGCGAAATGAAAATCGCAACGCTA-A
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* *
2918510 TTTCGCAATGCGAAATGAAAATCGCAACGAGGGA
1 -ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* *
2918544 ATCACAATACGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
2918572 CGAATTTAAT
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
32 1 0.01
33 79 0.98
34 1 0.01
ACGTcount: A:0.45, C:0.19, G:0.20, T:0.16
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:2918501 original size:19 final size:19
Alignment explanation
Indices: 2918445--2918536 Score: 60
Period size: 19 Copynumber: 5.4 Consensus size: 19
2918435 GGAAATTACT
* *
2918445 ATCGCAATGTGAAATAAAA
1 ATCGCAATGCGAAATGAAA
*
2918464 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
2918478 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
* *
2918497 ATCGCAA--CG--CT-AAT
1 ATCGCAATGCGAAATGAAA
*
2918511 TTCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
2918530 ATCGCAA
1 ATCGCAA
2918537 CGAGGGAATC
Statistics
Matches: 53, Mismatches: 10, Indels: 20
0.64 0.12 0.24
Matches are distributed among these distances:
14 17 0.32
15 2 0.04
16 4 0.08
17 3 0.06
18 2 0.04
19 25 0.47
ACGTcount: A:0.45, C:0.18, G:0.20, T:0.17
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:2918557 original size:66 final size:66
Alignment explanation
Indices: 2918446--2918578 Score: 212
Period size: 66 Copynumber: 2.0 Consensus size: 66
2918436 GAAATTACTA
* * * *
2918446 TCGCAATGTGAAATAAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCTAAT
1 TCGCAATGCGAAATAAAAATCGCAACGAGAGAATCACAATACGAAATGAAAATCGCAACGCGAAT
2918511 T
66 T
* *
2918512 TCGCAATGCGAAATGAAAATCGCAACGAGGGAATCACAATACGAAATGAAAATCGCAACGCGAAT
1 TCGCAATGCGAAATAAAAATCGCAACGAGAGAATCACAATACGAAATGAAAATCGCAACGCGAAT
2918577 T
66 T
2918578 T
1 T
2918579 AATTTCGCGT
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
66 61 1.00
ACGTcount: A:0.44, C:0.19, G:0.20, T:0.17
Consensus pattern (66 bp):
TCGCAATGCGAAATAAAAATCGCAACGAGAGAATCACAATACGAAATGAAAATCGCAACGCGAAT
T
Found at i:2918603 original size:14 final size:14
Alignment explanation
Indices: 2918586--2918643 Score: 53
Period size: 14 Copynumber: 3.7 Consensus size: 14
2918576 TTTAATTTCG
2918586 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
2918600 CGTTGCGATTTTCATTTTCG
1 CGTTGCGA--TTC----TCT
2918620 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
2918634 CGTTGCGATT
1 CGTTGCGATT
2918644 TTCATTTCGC
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
14 20 0.56
16 3 0.08
18 3 0.08
20 10 0.28
ACGTcount: A:0.09, C:0.24, G:0.22, T:0.45
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:2918659 original size:33 final size:33
Alignment explanation
Indices: 2918571--2918661 Score: 146
Period size: 34 Copynumber: 2.7 Consensus size: 33
2918561 AAATCGCAAC
* *
2918571 GCGAATTTAATTTCGCGTTGCGATTCTCTCGTT
1 GCGATTTTCATTTCGCGTTGCGATTCTCTCGTT
2918604 GCGATTTTCATTTTCGCGTTGCGATTCTCTCGTT
1 GCGATTTTCA-TTTCGCGTTGCGATTCTCTCGTT
*
2918638 GCGATTTTCATTTCGCATTGCGAT
1 GCGATTTTCATTTCGCGTTGCGAT
2918662 AGTACTTTTT
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
33 21 0.39
34 33 0.61
ACGTcount: A:0.13, C:0.22, G:0.21, T:0.44
Consensus pattern (33 bp):
GCGATTTTCATTTCGCGTTGCGATTCTCTCGTT
Found at i:2918801 original size:14 final size:14
Alignment explanation
Indices: 2918768--2918803 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
2918758 CATCAATTAA
2918768 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
2918782 -CAAATCACCTTTT
1 ACAAATCAACTTTT
2918795 ACAAATCAA
1 ACAAATCAA
2918804 TTAAACAATC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.44, C:0.25, G:0.00, T:0.31
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:2920212 original size:21 final size:21
Alignment explanation
Indices: 2920147--2920212 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 21
2920137 GTGAATCGGG
2920147 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAATGGTGGGAGGGGA
* * ** * *
2920167 CTCTTCAATGATGACAGTGGC
1 CTCTTGAATGGTGGGAGGGGA
*
2920188 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAATGGTGGGAGGGGA
2920209 CTCT
1 CTCT
2920213 CGAGGAATGA
Statistics
Matches: 32, Mismatches: 13, Indels: 1
0.70 0.28 0.02
Matches are distributed among these distances:
20 12 0.38
21 20 0.62
ACGTcount: A:0.20, C:0.18, G:0.36, T:0.26
Consensus pattern (21 bp):
CTCTTGAATGGTGGGAGGGGA
Found at i:2920231 original size:42 final size:41
Alignment explanation
Indices: 2920147--2920268 Score: 120
Period size: 42 Copynumber: 2.9 Consensus size: 41
2920137 GTGAATCGGG
* * * *
2920147 CTCTTGAATGGTGGGA-GGGACTCTTCAATGATGACAGTGGC
1 CTCTTGAACGGTGGGAGGGGACTC-TCGAGGATGACAGGGGC
*
2920188 CTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGAGGGGACTCTCGAGG-ATGACAGGGGC
* * * * *
2920230 CTCTTCAACGATAGGAGTGGACTCTTGAGGGATGACAGG
1 CTCTTGAACGGTGGGAGGGGACTCTCGA-GGATGACAGG
2920269 CGATTCGGGC
Statistics
Matches: 67, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
41 19 0.28
42 46 0.69
43 2 0.03
ACGTcount: A:0.23, C:0.17, G:0.37, T:0.23
Consensus pattern (41 bp):
CTCTTGAACGGTGGGAGGGGACTCTCGAGGATGACAGGGGC
Found at i:2922272 original size:20 final size:19
Alignment explanation
Indices: 2922241--2922301 Score: 68
Period size: 20 Copynumber: 3.1 Consensus size: 19
2922231 TCTTTTGGTT
2922241 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGA
* *
2922260 GATAATGAGAATCGCAACGCG
1 GA-AATGAAAATCGCAACG-A
**
2922281 GAAATGACTATCGCAACGA
1 GAAATGAAAATCGCAACGA
2922300 GA
1 GA
2922302 GAATCGCAAC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 4 0.11
20 29 0.83
21 2 0.06
ACGTcount: A:0.44, C:0.18, G:0.25, T:0.13
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGA
Found at i:2922309 original size:14 final size:14
Alignment explanation
Indices: 2922290--2922326 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
2922280 GGAAATGACT
2922290 ATCGCAACGAGAGA
1 ATCGCAACGAGAGA
2922304 ATCGCAACGAGAGA
1 ATCGCAACGAGAGA
2922318 ATCGCAACG
1 ATCGCAACG
2922327 CGAAATGACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.41, C:0.24, G:0.27, T:0.08
Consensus pattern (14 bp):
ATCGCAACGAGAGA
Found at i:2922350 original size:33 final size:33
Alignment explanation
Indices: 2922304--2922376 Score: 110
Period size: 33 Copynumber: 2.2 Consensus size: 33
2922294 CAACGAGAGA
*
2922304 ATCGCAACGAGAGAATCGCAACGCGAAATGACT
1 ATCGCAACCAGAGAATCGCAACGCGAAATGACT
* **
2922337 ATCGCGACCAGAGAATCGCAACGCGAAATGAAA
1 ATCGCAACCAGAGAATCGCAACGCGAAATGACT
2922370 ATCGCAA
1 ATCGCAA
2922377 TGCGATTTTC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.41, C:0.25, G:0.23, T:0.11
Consensus pattern (33 bp):
ATCGCAACCAGAGAATCGCAACGCGAAATGACT
Found at i:2922350 original size:47 final size:48
Alignment explanation
Indices: 2922266--2922359 Score: 163
Period size: 47 Copynumber: 2.0 Consensus size: 48
2922256 ACGAGATAAT
*
2922266 GAGAATCGCAACGCGGAAATGACTATCGCAACGAGAGAATCGCAACGA
1 GAGAATCGCAACGCGGAAATGACTATCGCAACCAGAGAATCGCAACGA
*
2922314 GAGAATCGCAACGC-GAAATGACTATCGCGACCAGAGAATCGCAACG
1 GAGAATCGCAACGCGGAAATGACTATCGCAACCAGAGAATCGCAACG
2922360 CGAAATGAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
47 30 0.68
48 14 0.32
ACGTcount: A:0.38, C:0.24, G:0.27, T:0.11
Consensus pattern (48 bp):
GAGAATCGCAACGCGGAAATGACTATCGCAACCAGAGAATCGCAACGA
Found at i:2922399 original size:19 final size:20
Alignment explanation
Indices: 2922377--2922428 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
2922367 AAAATCGCAA
2922377 TGCGATTTTCATTT-CGCGT
1 TGCGATTTTCATTTCCGCGT
*
2922396 TGCGATAGTT-ATTTCCGCGT
1 TGCGAT-TTTCATTTCCGCGT
*
2922416 TGCAATTTTCATT
1 TGCGATTTTCATT
2922429 CTCGAAACTA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
19 12 0.44
20 15 0.56
ACGTcount: A:0.15, C:0.19, G:0.19, T:0.46
Consensus pattern (20 bp):
TGCGATTTTCATTTCCGCGT
Found at i:2922980 original size:20 final size:20
Alignment explanation
Indices: 2922931--2923044 Score: 113
Period size: 20 Copynumber: 5.7 Consensus size: 20
2922921 CGCTATGTAA
* * *
2922931 ATCGCGTTGCGAAAGTCAGA
1 ATCGCATTGCGATAGTCAGT
* *
2922951 ATCGCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATAGTCAGT
* * *
2922971 ATCTCATTGCGATTTTGT-ATT
1 ATCGCATTGCGA--TAGTCAGT
*
2922992 ATCGCATTGCGATAGTAAGT
1 ATCGCATTGCGATAGTCAGT
*
2923012 ATCGCATTGCGCTAGTCAGT
1 ATCGCATTGCGATAGTCAGT
2923032 ATCGCATTGCGAT
1 ATCGCATTGCGAT
2923045 TTACTTATTC
Statistics
Matches: 79, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
19 3 0.04
20 61 0.77
21 13 0.16
22 2 0.03
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (20 bp):
ATCGCATTGCGATAGTCAGT
Found at i:2923029 original size:61 final size:61
Alignment explanation
Indices: 2922931--2923046 Score: 160
Period size: 61 Copynumber: 1.9 Consensus size: 61
2922921 CGCTATGTAA
* * * *
2922931 ATCGCGTTGCGAAAGTCAGAATCGCGTTGCGAAAGTCAGTATCTCATTGCGATTTTGTATT
1 ATCGCATTGCGAAAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTGTATT
* * **
2922992 ATCGCATTGCGATAGTAAGTATCGCATTGCGCTAGTCAGTATCGCATTGCGATTT
1 ATCGCATTGCGAAAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTT
2923047 ACTTATTCGC
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
61 47 1.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (61 bp):
ATCGCATTGCGAAAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTGTATT
Found at i:2923134 original size:21 final size:21
Alignment explanation
Indices: 2923094--2923134 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
2923084 ACTGTATACC
**
2923094 ATCGCAACGCGATTTCCAACT
1 ATCGCAACGCGAAATCCAACT
*
2923115 ATCGCAACGCGAAATGCAAC
1 ATCGCAACGCGAAATCCAAC
2923135 GCGAATTTGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.32, G:0.17, T:0.17
Consensus pattern (21 bp):
ATCGCAACGCGAAATCCAACT
Found at i:2923380 original size:3 final size:3
Alignment explanation
Indices: 2923372--2923402 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
2923362 AACAATAACC
2923372 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
2923403 ACAATTGAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:2929060 original size:23 final size:23
Alignment explanation
Indices: 2929031--2929106 Score: 134
Period size: 23 Copynumber: 3.3 Consensus size: 23
2929021 GGATACGCTA
2929031 GCTGCTGTGAAGGTCCTGCTGGT
1 GCTGCTGTGAAGGTCCTGCTGGT
*
2929054 GCTGCTGTGAAGGTCCTGCTGTT
1 GCTGCTGTGAAGGTCCTGCTGGT
2929077 GCTGCTGTGAAGGTCCTGCTGGT
1 GCTGCTGTGAAGGTCCTGCTGGT
*
2929100 GCAGCTG
1 GCTGCTG
2929107 AGGATGAATC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 50 1.00
ACGTcount: A:0.09, C:0.22, G:0.38, T:0.30
Consensus pattern (23 bp):
GCTGCTGTGAAGGTCCTGCTGGT
Found at i:2930776 original size:9 final size:9
Alignment explanation
Indices: 2930762--2930795 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
2930752 TAAGTAAAAT
2930762 ATTAAATAA
1 ATTAAATAA
2930771 ATTAAAT-A
1 ATTAAATAA
*
2930779 CTTAAATAA
1 ATTAAATAA
2930788 ATTAAATA
1 ATTAAATA
2930796 TAAAATATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (9 bp):
ATTAAATAA
Found at i:2930776 original size:17 final size:16
Alignment explanation
Indices: 2930758--2930802 Score: 72
Period size: 17 Copynumber: 2.8 Consensus size: 16
2930748 TATATAAGTA
2930758 AAATATTAAATAAATT
1 AAATATTAAATAAATT
2930774 AAATACTTAAATAAATT
1 AAATA-TTAAATAAATT
*
2930791 AAATATAAAATA
1 AAATATTAAATA
2930803 TTAAAAATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 11 0.41
17 16 0.59
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (16 bp):
AAATATTAAATAAATT
Found at i:2931109 original size:19 final size:19
Alignment explanation
Indices: 2931082--2931123 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
2931072 AGGCGCGCCT
* *
2931082 CACGTGGCGTGCCTTACCC
1 CACGGGGCGTGCCTTACCA
2931101 CACGGGGCGTGCCTTACCA
1 CACGGGGCGTGCCTTACCA
2931120 CACG
1 CACG
2931124 TGGCACCAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.14, C:0.40, G:0.29, T:0.17
Consensus pattern (19 bp):
CACGGGGCGTGCCTTACCA
Found at i:2931234 original size:14 final size:14
Alignment explanation
Indices: 2931215--2931249 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
2931205 TGCCTGATCG
2931215 AAAATATTAAATGA
1 AAAATATTAAATGA
2931229 AAAATATTAAATGA
1 AAAATATTAAATGA
2931243 AAAATAT
1 AAAATAT
2931250 AATTTTTCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.29
Consensus pattern (14 bp):
AAAATATTAAATGA
Found at i:2936130 original size:33 final size:34
Alignment explanation
Indices: 2936093--2936197 Score: 142
Period size: 33 Copynumber: 3.1 Consensus size: 34
2936083 TAAGTTGAAA
* * *
2936093 TTTAATGTTAAATTTCTAA-ACTATAATTTATAT
1 TTTAATTTTAAATTTCGAATAATATAATTTATAT
* *
2936126 TTTAATTTTAAATTTCGAATAATATTATTTTTAT
1 TTTAATTTTAAATTTCGAATAATATAATTTATAT
*
2936160 TTT-ATTTTAAATTTCGAATAATATAATTTGTAT
1 TTTAATTTTAAATTTCGAATAATATAATTTATAT
2936193 TTTAA
1 TTTAA
2936198 AAACATTTAT
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
33 48 0.76
34 15 0.24
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.55
Consensus pattern (34 bp):
TTTAATTTTAAATTTCGAATAATATAATTTATAT
Found at i:2936741 original size:21 final size:21
Alignment explanation
Indices: 2936717--2936786 Score: 88
Period size: 21 Copynumber: 3.3 Consensus size: 21
2936707 ATAAAACCCT
*
2936717 GCGGGCTAGGCATGTAACCTG
1 GCGGGCTAGGAATGTAACCTG
2936738 GCGGGCTAGGAATGTAACCCT-
1 GCGGGCTAGGAATGTAA-CCTG
* *
2936759 GCGGGCTAGGAATATAAACTG
1 GCGGGCTAGGAATGTAACCTG
*
2936780 GTGGGCT
1 GCGGGCT
2936787 TGGCATATGA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
20 2 0.05
21 38 0.88
22 3 0.07
ACGTcount: A:0.23, C:0.20, G:0.37, T:0.20
Consensus pattern (21 bp):
GCGGGCTAGGAATGTAACCTG
Found at i:2936794 original size:21 final size:21
Alignment explanation
Indices: 2936719--2936813 Score: 57
Period size: 21 Copynumber: 4.5 Consensus size: 21
2936709 AAAACCCTGC
* * *
2936719 GGGCTAGGCATGTAACCTGGC
1 GGGCTAGGCATATAAACTGGA
* * * *
2936740 GGGCTAGGAATGTAACCCT-GC
1 GGGCTAGGCATATAA-ACTGGA
* *
2936761 GGGCTAGGAATATAAACTGGT
1 GGGCTAGGCATATAAACTGGA
* * *
2936782 GGGCTTGGCATATGAAGTGGA
1 GGGCTAGGCATATAAACTGGA
*
2936803 GGGCTGGGCAT
1 GGGCTAGGCAT
2936814 GTACCCCTGT
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
20 2 0.03
21 57 0.92
22 3 0.05
ACGTcount: A:0.23, C:0.17, G:0.39, T:0.21
Consensus pattern (21 bp):
GGGCTAGGCATATAAACTGGA
Found at i:2938492 original size:29 final size:28
Alignment explanation
Indices: 2938445--2938506 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 28
2938435 TCTAAATAAT
* *
2938445 AATAATTATATAATATTATTTTAATAAAAA
1 AATATTTACATAATATTA--TTAATAAAAA
*
2938475 AATATTTACATAA-ATTATTAATATAAA
1 AATATTTACATAATATTATTAATAAAAA
2938502 AATAT
1 AATAT
2938507 AACTATTTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
27 14 0.48
29 4 0.14
30 11 0.38
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (28 bp):
AATATTTACATAATATTATTAATAAAAA
Found at i:2942300 original size:22 final size:20
Alignment explanation
Indices: 2942275--2942316 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
2942265 GTATCAAAGA
2942275 AACTTGGGTCAAGTAATTCTTG
1 AACTTGGG-C-AGTAATTCTTG
*
2942297 AACTTGGGCATTAATTCTTG
1 AACTTGGGCAGTAATTCTTG
2942317 CATGGGGCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 10 0.53
21 1 0.05
22 8 0.42
ACGTcount: A:0.26, C:0.14, G:0.21, T:0.38
Consensus pattern (20 bp):
AACTTGGGCAGTAATTCTTG
Found at i:2944837 original size:3 final size:3
Alignment explanation
Indices: 2944831--2944904 Score: 112
Period size: 3 Copynumber: 24.7 Consensus size: 3
2944821 TTTTTATCCA
** * *
2944831 TAT TAT TAT TAT CCT TAT TAT TAT TAA TAT TAT TAT TAT CAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
2944879 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
2944905 ATTTATATTA
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:2944861 original size:9 final size:9
Alignment explanation
Indices: 2944830--2944924 Score: 66
Period size: 9 Copynumber: 10.1 Consensus size: 9
2944820 TTTTTTATCC
2944830 ATATTATTA
1 ATATTATTA
* **
2944839 TTATCCTTA
1 ATATTATTA
*
2944848 TTATTATTA
1 ATATTATTA
2944857 ATATTATTA
1 ATATTATTA
2944866 TTATCATTATTA
1 --AT-ATTATTA
*
2944878 TTATTATTA
1 ATATTATTA
*
2944887 TTATTATTA
1 ATATTATTA
*
2944896 TTATTATTA
1 ATATTATTA
*
2944905 ATTTATATTA
1 ATAT-TATTA
2944915 A-ATATATTA
1 ATAT-TATTA
2944924 A
1 A
2944925 ATACATAATA
Statistics
Matches: 72, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
9 56 0.78
10 7 0.10
11 2 0.03
12 7 0.10
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (9 bp):
ATATTATTA
Found at i:2947138 original size:18 final size:18
Alignment explanation
Indices: 2947092--2947139 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
2947082 TTTTCAAATA
2947092 TTTTA-TTTATTTATTAT
1 TTTTATTTTATTTATTAT
**
2947109 TTTTATAATATTTA-TAT
1 TTTTATTTTATTTATTAT
2947126 GTTTTATTTTATTT
1 -TTTTATTTTATTT
2947140 GTAAGTATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 8 0.32
18 17 0.68
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (18 bp):
TTTTATTTTATTTATTAT
Found at i:2957754 original size:11 final size:11
Alignment explanation
Indices: 2957738--2957790 Score: 52
Period size: 11 Copynumber: 4.5 Consensus size: 11
2957728 ATTATGCTTG
2957738 AAGAAAAAAAA
1 AAGAAAAAAAA
2957749 AAGAAAAAAAA
1 AAGAAAAAAAA
*
2957760 TAGAAAATAGAAAA
1 AAG-AAA-A-AAAA
* *
2957774 AAGAGAAGAAA
1 AAGAAAAAAAA
2957785 AAGAAA
1 AAGAAA
2957791 GGGGGTCAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
11 21 0.62
12 4 0.12
13 3 0.09
14 6 0.18
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (11 bp):
AAGAAAAAAAA
Found at i:2957757 original size:9 final size:9
Alignment explanation
Indices: 2957743--2957790 Score: 51
Period size: 9 Copynumber: 5.3 Consensus size: 9
2957733 GCTTGAAGAA
2957743 AAAAAAAAG
1 AAAAAAAAG
*
2957752 AAAAAAAAT
1 AAAAAAAAG
* *
2957761 AGAAAATAG
1 AAAAAAAAG
*
2957770 AAAAAAGAG
1 AAAAAAAAG
*
2957779 AAGAAAAAG
1 AAAAAAAAG
2957788 AAA
1 AAA
2957791 GGGGGTCAAG
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:2958150 original size:18 final size:17
Alignment explanation
Indices: 2958112--2958156 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 17
2958102 CTATTTCAAG
*
2958112 TTCAATTTA-TTTGAGA
1 TTCAATTTATTTTGAAA
2958128 TTCAATTTATTTTGGAAA
1 TTCAATTTATTTT-GAAA
2958146 TTCAATTTATT
1 TTCAATTTATT
2958157 CTTTTCTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 9 0.35
17 3 0.12
18 14 0.54
ACGTcount: A:0.31, C:0.07, G:0.09, T:0.53
Consensus pattern (17 bp):
TTCAATTTATTTTGAAA
Found at i:2959043 original size:82 final size:82
Alignment explanation
Indices: 2958906--2959123 Score: 409
Period size: 82 Copynumber: 2.7 Consensus size: 82
2958896 GACCAAACAT
*
2958906 AATTTAGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTT
1 AATTTAGAAGATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTT
2958971 TAGCAGAACAAGCATTG
66 TAGCAGAACAAGCATTG
*
2958988 AATTTGGAAGATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTT
1 AATTTAGAAGATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTT
*
2959053 TAGCAGAACAATCATTG
66 TAGCAGAACAAGCATTG
2959070 AATTTAGAAGATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTAT
1 AATTTAGAAGATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTAT
2959124 TTGATCTGAA
Statistics
Matches: 132, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
82 132 1.00
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (82 bp):
AATTTAGAAGATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTT
TAGCAGAACAAGCATTG
Found at i:2959879 original size:113 final size:113
Alignment explanation
Indices: 2959681--2960228 Score: 821
Period size: 113 Copynumber: 4.8 Consensus size: 113
2959671 TAGCAAAGAT
* * * *
2959681 TTGAATCCATCATTTGATGGAACAGCTTTTCCAGAGAAGGTTCATAATGAGAAGAACCCATCTGA
1 TTGAATCCATCATTTGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
*
2959746 AGAAGGAAGAAGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTAC
66 AGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTAC
* *
2959794 TTGAATCCGTCATTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
1 TTGAATCCATCATTTGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
* * * **
2959859 AGAAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGT
66 AGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTAC
* * * * *
2959907 TTAAATTCATCATTTGATGGATCAACATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGA
1 TTGAATCCATCATTTGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
* *
2959972 AGAAGGAAGAAGAAATTCATAATGAGAAGAATTTCTTCAACCTTTTAC
66 AGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTAC
* * * *
2960020 CTGAATCCATCATTTGGTGAATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
1 TTGAATCCATCATTTGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
*
2960085 AGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
66 AGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTAC
* * *
2960133 TTGAATTCATCATTTGATGGATCAACATTGCCAG-GTAAAGTTCATAATGAGAAGAACTCATCTG
1 TTGAATCCATCATTTGATGGATCAACTTTTCCAGAG-AAAGTTCATAATGAGAAGAACTCATCTG
2960197 AAGAAGGAAG-AGAAAGTTCATAATGAGAAGAA
65 AAGAAGGAAGAAG-AAGTTCATAATGAGAAGAA
2960229 CTCATCAAGA
Statistics
Matches: 390, Mismatches: 43, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
112 3 0.01
113 387 0.99
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (113 bp):
TTGAATCCATCATTTGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
AGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTAC
Found at i:2960486 original size:3 final size:3
Alignment explanation
Indices: 2960480--2960547 Score: 100
Period size: 3 Copynumber: 22.7 Consensus size: 3
2960470 TTTTTATCCA
** * *
2960480 TAT TAT TAT TAT CCT TAT TAT TAT TAA TAT TAT TAT TAT CAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
2960528 TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TA
2960548 ATTTATATTA
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:2965813 original size:20 final size:19
Alignment explanation
Indices: 2965766--2965822 Score: 71
Period size: 19 Copynumber: 3.0 Consensus size: 19
2965756 GAATAATGTG
*
2965766 TTTA-AAAGTTTTGATACT
1 TTTACAAAGTTTTGAAACT
2965784 TTTACAAAGTTTTGAAACT
1 TTTACAAAGTTTTGAAACT
* *
2965803 TTCTTCAAAGTTTCGAAACT
1 TT-TACAAAGTTTTGAAACT
2965823 ACATGTGCAG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
18 4 0.12
19 15 0.44
20 15 0.44
ACGTcount: A:0.33, C:0.12, G:0.11, T:0.44
Consensus pattern (19 bp):
TTTACAAAGTTTTGAAACT
Found at i:2968162 original size:21 final size:21
Alignment explanation
Indices: 2968136--2968189 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
2968126 GTTTCCAGAT
*
2968136 TCGCAACGTGAACTTTGACTA
1 TCGCAACGCGAACTTTGACTA
*
2968157 TCGCAATGCGAACTTTGACTA
1 TCGCAACGCGAACTTTGACTA
*
2968178 TCGCAATGCGAA
1 TCGCAACGCGAA
2968190 TATAAATCGC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (21 bp):
TCGCAACGCGAACTTTGACTA
Found at i:2968313 original size:21 final size:21
Alignment explanation
Indices: 2968287--2968362 Score: 75
Period size: 21 Copynumber: 3.6 Consensus size: 21
2968277 GATTTACATA
2968287 TTCGCATTGCGATAGTCCAAG
1 TTCGCATTGCGATAGTCCAAG
* * *
2968308 TTCGCATTACGATTTATTCCAAA
1 TTCGCATTGCGA--TAGTCCAAG
*
2968331 TT--CATTGCGATAGTCGAAG
1 TTCGCATTGCGATAGTCCAAG
*
2968350 TTCGCGTTGCGAT
1 TTCGCATTGCGAT
2968363 TTATTCCAAA
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
19 8 0.19
21 26 0.60
23 9 0.21
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (21 bp):
TTCGCATTGCGATAGTCCAAG
Found at i:2968326 original size:92 final size:90
Alignment explanation
Indices: 2968152--2968333 Score: 240
Period size: 92 Copynumber: 2.0 Consensus size: 90
2968142 CGTGAACTTT
* * *
2968152 GACTATCGCAATGCGAACTTTGACTATCGCAATGCGAATATAAATCGCAATACGATAGTCAAAGT
1 GACTATCGCAACGCAAACTTCGACTATCGCAATGCGAATATAAATCGCAATACGATAGTCAAAGT
* *
2968217 TCGCGTTGCGATTTATTCCAAATTC
66 TCGCATTACGATTTATTCCAAATTC
* * * * *
2968242 GACTATCGCAACGCAAACTTCGACTATCGCATTGCG-ATTTACATATTCGCATTGCGATAGTCCA
1 GACTATCGCAACGCAAACTTCGACTATCGCAATGCGAATATA-A-A-TCGCAATACGATAGTCAA
2968306 AGTTCGCATTACGATTTATTCCAAATTC
63 AGTTCGCATTACGATTTATTCCAAATTC
2968334 ATTGCGATAG
Statistics
Matches: 79, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
89 4 0.05
90 33 0.42
91 1 0.01
92 41 0.52
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.30
Consensus pattern (90 bp):
GACTATCGCAACGCAAACTTCGACTATCGCAATGCGAATATAAATCGCAATACGATAGTCAAAGT
TCGCATTACGATTTATTCCAAATTC
Found at i:2968351 original size:42 final size:42
Alignment explanation
Indices: 2968291--2968386 Score: 147
Period size: 42 Copynumber: 2.3 Consensus size: 42
2968281 TACATATTCG
2968291 CATTGCGATAGTCCAAGTTCGCATTACGATTTATTCCAAATT
1 CATTGCGATAGTCCAAGTTCGCATTACGATTTATTCCAAATT
* * *
2968333 CATTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATT
1 CATTGCGATAGTCCAAGTTCGCATTACGATTTATTCCAAATT
* *
2968375 CGTTGTGATAGT
1 CATTGCGATAGT
2968387 TCAAAATCGC
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (42 bp):
CATTGCGATAGTCCAAGTTCGCATTACGATTTATTCCAAATT
Found at i:2968378 original size:21 final size:21
Alignment explanation
Indices: 2968317--2968379 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
2968307 GTTCGCATTA
*
2968317 CGATTTATTCCAAATTCATTG
1 CGATTTATTCCAAATTCGTTG
* * *
2968338 CGA--TAGTCGAAGTTCGCGTTG
1 CGATTTATTCCAAATT--CGTTG
2968359 CGATTTATTCCAAATTCGTTG
1 CGATTTATTCCAAATTCGTTG
2968380 TGATAGTTCA
Statistics
Matches: 31, Mismatches: 7, Indels: 8
0.67 0.15 0.17
Matches are distributed among these distances:
19 8 0.26
21 15 0.48
23 8 0.26
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (21 bp):
CGATTTATTCCAAATTCGTTG
Found at i:2968494 original size:21 final size:21
Alignment explanation
Indices: 2968468--2968510 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
2968458 GGACGTGTCG
2968468 AAGACACGTATTACCACGACC
1 AAGACACGTATTACCACGACC
2968489 AAGACACGTATTACCACGACC
1 AAGACACGTATTACCACGACC
2968510 A
1 A
2968511 CGACCACGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.33, G:0.14, T:0.14
Consensus pattern (21 bp):
AAGACACGTATTACCACGACC
Found at i:2969039 original size:6 final size:6
Alignment explanation
Indices: 2969017--2969053 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
2969007 GTCCGTCTCG
*
2969017 GGTCG- GGTCGT -GTCGT GGTCGT GGTCGT GGTAGT GGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
2969054 AATACGTGTC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
5 10 0.34
6 19 0.66
ACGTcount: A:0.03, C:0.14, G:0.51, T:0.32
Consensus pattern (6 bp):
GGTCGT
Found at i:2969112 original size:21 final size:21
Alignment explanation
Indices: 2969087--2969200 Score: 101
Period size: 21 Copynumber: 5.4 Consensus size: 21
2969077 CGCGAATACT
*
2969087 ATCGCAACGAATTTGGAATAA
1 ATCGCAACGAACTTGGAATAA
* *
2969108 ATCGCAACGTGAACTTCGACT--
1 ATCGCAAC--GAACTTGGAATAA
*
2969129 ATCGCAACGAACTTGAAATAA
1 ATCGCAACGAACTTGGAATAA
* *
2969150 ATCGTAACGCGAACTTGGACT--
1 ATCGCAA--CGAACTTGGAATAA
*
2969171 ATCGCAACGAATTTGGAATAA
1 ATCGCAACGAACTTGGAATAA
2969192 ATCGCAACG
1 ATCGCAACG
2969201 CGGACTTCGA
Statistics
Matches: 73, Mismatches: 12, Indels: 16
0.72 0.12 0.16
Matches are distributed among these distances:
19 18 0.25
21 37 0.51
23 18 0.25
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.22
Consensus pattern (21 bp):
ATCGCAACGAACTTGGAATAA
Found at i:2969149 original size:42 final size:42
Alignment explanation
Indices: 2969084--2969221 Score: 222
Period size: 42 Copynumber: 3.3 Consensus size: 42
2969074 CCACGCGAAT
*
2969084 ACTATCGCAACGAATTTGGAATAAATCGCAACGTGAACTTCG
1 ACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCG
* * * *
2969126 ACTATCGCAACGAACTTGAAATAAATCGTAACGCGAACTTGG
1 ACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCG
*
2969168 ACTATCGCAACGAATTTGGAATAAATCGCAACGCGGACTTCG
1 ACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCG
2969210 ACTATCGCAACG
1 ACTATCGCAACG
2969222 CGAATCTAGA
Statistics
Matches: 86, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 86 1.00
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.22
Consensus pattern (42 bp):
ACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCG
Found at i:2970902 original size:2 final size:2
Alignment explanation
Indices: 2970895--2970937 Score: 61
Period size: 2 Copynumber: 22.0 Consensus size: 2
2970885 TAAACCAAAC
* *
2970895 TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA TA -A TA AA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2970936 TA
1 TA
2970938 ATAATGAAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:2971050 original size:23 final size:23
Alignment explanation
Indices: 2971002--2971050 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
2970992 CAAATAAATA
* *
2971002 AAATTAAATCAACTACTAATAAT
1 AAATGAAATCAACAACTAATAAT
*
2971025 AAATGAAATCAA-AACTATATAGT
1 AAATGAAATCAACAACTA-ATAAT
2971048 AAA
1 AAA
2971051 AAGCTAATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 4 0.18
23 18 0.82
ACGTcount: A:0.59, C:0.10, G:0.04, T:0.27
Consensus pattern (23 bp):
AAATGAAATCAACAACTAATAAT
Found at i:2972303 original size:3 final size:3
Alignment explanation
Indices: 2972295--2972332 Score: 51
Period size: 3 Copynumber: 12.7 Consensus size: 3
2972285 GGCTTGTTTG
*
2972295 TAA TAA TAA TAA TAG TAAA TAA -AA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TA
2972333 TCAATAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
2 2 0.06
3 27 0.87
4 2 0.06
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:2972342 original size:24 final size:24
Alignment explanation
Indices: 2972295--2972341 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
2972285 GGCTTGTTTG
2972295 TAATAATAATAATAGTAAATAAAA
1 TAATAATAATAATAGTAAATAAAA
*
2972319 TAATAATAATAATA-TCAATAAAA
1 TAATAATAATAATAGTAAATAAAA
2972342 AATGGGTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 8 0.36
24 14 0.64
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
TAATAATAATAATAGTAAATAAAA
Found at i:2972827 original size:113 final size:113
Alignment explanation
Indices: 2972676--2973337 Score: 963
Period size: 113 Copynumber: 5.9 Consensus size: 113
2972666 ATAGAGTCAT
* * *
2972676 GCAAAAGGTCGAACAAGCTCTTCTTATTAGGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* *
2972741 ATTATGAACTTTCTCTGGAAAAGTTGATCCATCGAGTGATGAATTCAA
66 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCGAGTGATGAATTCGA
* ** * *
2972789 ACAAGAA-GTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGACGAGTTCTTCT
1 GCAA-AAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
* * * * * * *
2972853 CATTATGAACTCTAC-CTGGCAATGTTGATCCATCAAATGATGAATTCAA
65 CATTATGAACT-TTCTCTGGAAAAGCTGATCCATCGAGTGATGAATTCGA
* **
2972902 ACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
2972967 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCGAGTGATGGAATT-GA
66 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCGAGTGAT-GAATTCGA
*
2973015 GCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCGGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* * * *
2973080 ATTATGAACTTTATCTGGAAAAGCTGATCCATCAAGTGATGGATTTGA
66 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCGAGTGATGAATTCGA
*
2973128 GCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* * *
2973193 ATTATGAACTCTCTCTGGAAAAGCTGATCCATCGAGTGATGGATTTGA
66 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCGAGTGATGAATTCGA
* *
2973241 GCAAAAGATTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCATTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* *
2973306 ATTATGAACTCTT-TCTGGAAATGTTGATCCAT
66 ATTATGAACT-TTCTCTGGAAAAGCTGATCCAT
2973338 TATGATGGAT
Statistics
Matches: 502, Mismatches: 40, Indels: 14
0.90 0.07 0.03
Matches are distributed among these distances:
112 8 0.02
113 484 0.96
114 10 0.02
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (113 bp):
GCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
ATTATGAACTTTCTCTGGAAAAGCTGATCCATCGAGTGATGAATTCGA
Found at i:2980461 original size:12 final size:13
Alignment explanation
Indices: 2980437--2980465 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
2980427 AAAATGAAAA
2980437 AAATGCTAAATGT
1 AAATGCTAAATGT
2980450 AAATGC-AAATGT
1 AAATGCTAAATGT
2980462 AAAT
1 AAAT
2980466 ATGTGAATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.52, C:0.07, G:0.14, T:0.28
Consensus pattern (13 bp):
AAATGCTAAATGT
Found at i:2985929 original size:16 final size:17
Alignment explanation
Indices: 2985910--2985947 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
2985900 ATATTAATTT
2985910 ATATATATTTA-TAAAA
1 ATATATATTTATTAAAA
*
2985926 ATATTTATTTATTTAAAA
1 ATATATATTTA-TTAAAA
2985944 ATAT
1 ATAT
2985948 CAGAAAATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 10 0.53
18 9 0.47
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
ATATATATTTATTAAAA
Found at i:2986319 original size:2 final size:2
Alignment explanation
Indices: 2986312--2986340 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
2986302 TTTAAACCCA
2986312 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2986341 ATAATAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2986459 original size:23 final size:23
Alignment explanation
Indices: 2986411--2986459 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
2986401 CAAATAAATA
* *
2986411 AAATTAAATCAACTACTAATAAT
1 AAATGAAATCAACAACTAATAAT
*
2986434 AAATGAAATCAA-AACTATATAGT
1 AAATGAAATCAACAACTA-ATAAT
2986457 AAA
1 AAA
2986460 AAACTAATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 4 0.18
23 18 0.82
ACGTcount: A:0.59, C:0.10, G:0.04, T:0.27
Consensus pattern (23 bp):
AAATGAAATCAACAACTAATAAT
Found at i:2988638 original size:3 final size:3
Alignment explanation
Indices: 2988630--2988682 Score: 72
Period size: 3 Copynumber: 17.7 Consensus size: 3
2988620 GGCCTGTTTG
**
2988630 TAA TAA TAA TAA TTT TAA TAA TAA TAA TAA TAAA TAA -AA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA
2988675 TAA TAA TA
1 TAA TAA TA
2988683 TCAATAAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
2 2 0.05
3 39 0.89
4 3 0.07
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:2988656 original size:21 final size:21
Alignment explanation
Indices: 2988630--2988691 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 21
2988620 GGCCTGTTTG
* **
2988630 TAATAATAATAATTTTAATAA
1 TAATAATAATAAATAAAATAA
2988651 TAATAATAATAAATAAAATAA
1 TAATAATAATAAATAAAATAA
2988672 TAATAATAATATCAATAAAA
1 TAATAATAATA--AATAAAA
2988692 AATGGGTAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 29 0.81
23 7 0.19
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.34
Consensus pattern (21 bp):
TAATAATAATAAATAAAATAA
Found at i:2988688 original size:18 final size:18
Alignment explanation
Indices: 2988630--2988689 Score: 66
Period size: 18 Copynumber: 3.2 Consensus size: 18
2988620 GGCCTGTTTG
* *
2988630 TAATAATAATAATTTTAA
1 TAATAATAATAATATAAA
2988648 TAATAATAATAATAAATAAAA
1 TAATAATAATAAT--AT-AAA
*
2988669 TAATAATAATAATATCAA
1 TAATAATAATAATATAAA
2988687 TAA
1 TAA
2988690 AAAATGGGTA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
18 18 0.50
19 2 0.06
20 1 0.03
21 15 0.42
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (18 bp):
TAATAATAATAATATAAA
Found at i:3000909 original size:12 final size:12
Alignment explanation
Indices: 3000892--3000916 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
3000882 AAGTGCACCA
3000892 TTGCAATGCACT
1 TTGCAATGCACT
3000904 TTGCAATGCACT
1 TTGCAATGCACT
3000916 T
1 T
3000917 GCATTCACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (12 bp):
TTGCAATGCACT
Found at i:3022149 original size:24 final size:24
Alignment explanation
Indices: 3022122--3022173 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
3022112 TATAAATAAA
** *
3022122 AAAAGTTAGGTATTTAATTACATT
1 AAAAGTTAGACATTTAATTACATC
3022146 AAAAGTTAGACATTTAATTACATC
1 AAAAGTTAGACATTTAATTACATC
3022170 AAAA
1 AAAA
3022174 AAATTAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.48, C:0.08, G:0.10, T:0.35
Consensus pattern (24 bp):
AAAAGTTAGACATTTAATTACATC
Found at i:3022634 original size:135 final size:137
Alignment explanation
Indices: 3022412--3022666 Score: 424
Period size: 135 Copynumber: 1.9 Consensus size: 137
3022402 AAAGAAAAAA
*
3022412 TTACAAATTGTTAAAATTCATCCATTCACATAAAAAATAAAAAAAAATTCATCTAATTTCTTTAT
1 TTACAAATCGTTAAAATTCATCCATTCACAT--AAAATAAAAAAAAATTCATCTAATTTCTTTAT
* * *
3022477 TTACCGATTATTTCACGCAACTTACATATAATAATAAAATATATAAATTTAATTTTATAATAAAT
64 TTACCGATAATTTAACGCAACTTACATATAATAATAAAATATATAAATATAATTTTATAATAAAT
3022542 CCATATAAT
129 CCATATAAT
* *
3022551 TTACAAATCGTTAAAATTCATCCATTCACAT-AAA-AAAATAAAATTTATCTAATTTCTTTATTT
1 TTACAAATCGTTAAAATTCATCCATTCACATAAAATAAAAAAAAATTCATCTAATTTCTTTATTT
3022614 ACCGATAATTTAACGCAACTTACATATAATAATAAAATATATAAATATAATTT
66 ACCGATAATTTAACGCAACTTACATATAATAATAAAATATATAAATATAATTT
3022667 CTGTGGCTAT
Statistics
Matches: 110, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
135 77 0.70
136 3 0.03
139 30 0.27
ACGTcount: A:0.47, C:0.13, G:0.02, T:0.38
Consensus pattern (137 bp):
TTACAAATCGTTAAAATTCATCCATTCACATAAAATAAAAAAAAATTCATCTAATTTCTTTATTT
ACCGATAATTTAACGCAACTTACATATAATAATAAAATATATAAATATAATTTTATAATAAATCC
ATATAAT
Found at i:3023059 original size:10 final size:10
Alignment explanation
Indices: 3023046--3023115 Score: 68
Period size: 10 Copynumber: 7.0 Consensus size: 10
3023036 AAAAATTAAT
3023046 GATTAAATTA
1 GATTAAATTA
*
3023056 GATTAAAGTA
1 GATTAAATTA
*
3023066 TATTAAATTA
1 GATTAAATTA
* * *
3023076 TATTGAAGTA
1 GATTAAATTA
3023086 GATTAAATTA
1 GATTAAATTA
* * *
3023096 TATTGAAGTA
1 GATTAAATTA
3023106 GATTAAATTA
1 GATTAAATTA
3023116 CAAGATAAAT
Statistics
Matches: 46, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
10 46 1.00
ACGTcount: A:0.47, C:0.00, G:0.13, T:0.40
Consensus pattern (10 bp):
GATTAAATTA
Found at i:3023072 original size:20 final size:20
Alignment explanation
Indices: 3023046--3023115 Score: 113
Period size: 20 Copynumber: 3.5 Consensus size: 20
3023036 AAAAATTAAT
* *
3023046 GATTAAATTAGATTAAAGTA
1 GATTAAATTATATTGAAGTA
*
3023066 TATTAAATTATATTGAAGTA
1 GATTAAATTATATTGAAGTA
3023086 GATTAAATTATATTGAAGTA
1 GATTAAATTATATTGAAGTA
3023106 GATTAAATTA
1 GATTAAATTA
3023116 CAAGATAAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.47, C:0.00, G:0.13, T:0.40
Consensus pattern (20 bp):
GATTAAATTATATTGAAGTA
Found at i:3023229 original size:10 final size:10
Alignment explanation
Indices: 3023214--3023253 Score: 62
Period size: 10 Copynumber: 4.0 Consensus size: 10
3023204 TTTTTTTAAT
3023214 GATTAAATTA
1 GATTAAATTA
*
3023224 GATTAAAGTA
1 GATTAAATTA
*
3023234 GATTAAAATA
1 GATTAAATTA
3023244 GATTAAATTA
1 GATTAAATTA
3023254 CAAGATAGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.53, C:0.00, G:0.12, T:0.35
Consensus pattern (10 bp):
GATTAAATTA
Found at i:3023262 original size:27 final size:25
Alignment explanation
Indices: 3023220--3023279 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 25
3023210 TAATGATTAA
* * *
3023220 ATTAGATTAAAGTAGATTAAAATAG
1 ATTAAATTAAAGTAGATAAAAATAC
3023245 ATTAAATTACAAGATAGATAAAAATAC
1 ATTAAATTA-AAG-TAGATAAAAATAC
3023272 ATTGAAAT
1 ATT-AAAT
3023280 ACATACTAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
25 8 0.28
26 3 0.10
27 14 0.48
28 4 0.14
ACGTcount: A:0.55, C:0.03, G:0.12, T:0.30
Consensus pattern (25 bp):
ATTAAATTAAAGTAGATAAAAATAC
Found at i:3028753 original size:2 final size:2
Alignment explanation
Indices: 3028746--3028771 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
3028736 TAATTTAATA
3028746 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
3028772 TATTTTAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3030439 original size:18 final size:18
Alignment explanation
Indices: 3030418--3030455 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
3030408 GGGTTTAGTT
3030418 TTGTTTCGT-AATTTAACA
1 TTGTTTC-TAAATTTAACA
*
3030436 TTGTTTCTAAATTTATCA
1 TTGTTTCTAAATTTAACA
3030454 TT
1 TT
3030456 TGATGTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 1 0.06
18 17 0.94
ACGTcount: A:0.26, C:0.11, G:0.08, T:0.55
Consensus pattern (18 bp):
TTGTTTCTAAATTTAACA
Found at i:3034105 original size:66 final size:65
Alignment explanation
Indices: 3033976--3034102 Score: 159
Period size: 65 Copynumber: 2.0 Consensus size: 65
3033966 AAGATCATGT
* * * * *
3033976 CTTTTAATTTGAAATATTTAAAAATATATTGTTATCATTTTAATATTTAAAAATATAATAAATAA
1 CTTTTAATTTAAAATATTAAAAAAGATATTGATATCATTTTAATATTTAAAAATATAAAAAATAA
* *
3034041 CTTTTATTTTAAAATATTCAAAAAAGATATTGATATTC-TTTTAATATTT-AAAATTTAAAAAA
1 CTTTTAATTTAAAATATT-AAAAAAGATATTGATA-TCATTTTAATATTTAAAAATATAAAAAA
3034103 ATATAGAAAT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
65 27 0.51
66 24 0.45
67 2 0.04
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (65 bp):
CTTTTAATTTAAAATATTAAAAAAGATATTGATATCATTTTAATATTTAAAAATATAAAAAATAA
Found at i:3034115 original size:38 final size:36
Alignment explanation
Indices: 3034012--3034118 Score: 96
Period size: 37 Copynumber: 2.9 Consensus size: 36
3034002 TATTGTTATC
* * * *
3034012 ATTTTAATATTTAAAAATATA-ATAAATA-ACTTTT
1 ATTTTAAAATTTAAAAAAATATAGAAATATTCTTTT
*
3034046 ATTTTAAAATATTCAAAAAAGATATTG--ATATTCTTTT
1 ATTTTAAAAT-TT-AAAAAA-ATATAGAAATATTCTTTT
3034083 AATATTTAAAATTTAAAAAAATATAGAAATATTCTT
1 -AT-TTTAAAATTTAAAAAAATATAGAAATATTCTT
3034119 ATAGAATATA
Statistics
Matches: 58, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
34 9 0.16
35 2 0.03
36 13 0.22
37 14 0.24
38 12 0.21
39 8 0.14
ACGTcount: A:0.50, C:0.04, G:0.03, T:0.44
Consensus pattern (36 bp):
ATTTTAAAATTTAAAAAAATATAGAAATATTCTTTT
Found at i:3034280 original size:22 final size:22
Alignment explanation
Indices: 3034229--3034288 Score: 70
Period size: 22 Copynumber: 2.7 Consensus size: 22
3034219 TTCATTACAA
3034229 TTTTT-TTTTGTTTTGACTTTTT
1 TTTTTCTTTTG-TTTGACTTTTT
3034251 TTTCTTCTTTTGTTTGA-TTTTT
1 TTT-TTCTTTTGTTTGACTTTTT
*
3034273 TCTTTTCTATTGTTTG
1 T-TTTTCTTTTGTTTG
3034289 TAAAAACTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
22 20 0.59
23 9 0.26
24 5 0.15
ACGTcount: A:0.05, C:0.08, G:0.10, T:0.77
Consensus pattern (22 bp):
TTTTTCTTTTGTTTGACTTTTT
Found at i:3034925 original size:31 final size:31
Alignment explanation
Indices: 3034889--3034949 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
3034879 AACTTAAGAG
* *
3034889 AGTTTTGCAATACTGAGATTTAAATAATTTT
1 AGTTTTACAATACTGAAATTTAAATAATTTT
3034920 AGTTTTACAATACTGAAATTTAAATAATTT
1 AGTTTTACAATACTGAAATTTAAATAATTT
3034950 ATACAACTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.39, C:0.07, G:0.10, T:0.44
Consensus pattern (31 bp):
AGTTTTACAATACTGAAATTTAAATAATTTT
Found at i:3035449 original size:16 final size:17
Alignment explanation
Indices: 3035428--3035473 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 17
3035418 AATTAAAATA
3035428 AATATAAAATTTTA-AT
1 AATATAAAATTTTATAT
3035444 AATATAAAATAATTTATAT
1 AATATAAAAT--TTTATAT
*
3035463 GATATAAAATT
1 AATATAAAATT
3035474 AAATATCTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 10 0.38
17 1 0.04
18 4 0.15
19 11 0.42
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (17 bp):
AATATAAAATTTTATAT
Found at i:3035457 original size:19 final size:19
Alignment explanation
Indices: 3035413--3035472 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 19
3035403 AACTTAAATC
**
3035413 AAAATAATTAAAATAA-AT
1 AAAATAATTTTAATAATAT
*
3035431 ATAA-AATTTTAATAATAT
1 AAAATAATTTTAATAATAT
*
3035449 AAAATAA-TTTATATGATAT
1 AAAATAATTTTA-ATAATAT
3035468 AAAAT
1 AAAAT
3035473 TAAATATCTA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
17 9 0.26
18 12 0.35
19 13 0.38
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (19 bp):
AAAATAATTTTAATAATAT
Found at i:3035490 original size:21 final size:21
Alignment explanation
Indices: 3035442--3035497 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 21
3035432 TAAAATTTTA
*
3035442 ATAATATAAAA-T-AATTTAT
1 ATAATATAAAATTAAATATAT
* *
3035461 ATGATATAAAATTAAATATCT
1 ATAATATAAAATTAAATATAT
*
3035482 ATAATATAATATTAAA
1 ATAATATAAAATTAAA
3035498 AATTAATATT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
19 10 0.33
20 1 0.03
21 19 0.63
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (21 bp):
ATAATATAAAATTAAATATAT
Found at i:3035510 original size:14 final size:14
Alignment explanation
Indices: 3035488--3035575 Score: 66
Period size: 14 Copynumber: 6.7 Consensus size: 14
3035478 ATCTATAATA
3035488 TAATA-TTAAAAAT
1 TAATATTTAAAAAT
3035501 TAATATTT---AAT
1 TAATATTTAAAAAT
*
3035512 TTAT-TTTAAAAAAT
1 TAATATTT-AAAAAT
3035526 TAATA-TT-AAAAT
1 TAATATTTAAAAAT
* *
3035538 TAATATCT-ATAAT
1 TAATATTTAAAAAT
*
3035551 ATAATATTAAAAAAT
1 -TAATATTTAAAAAT
3035566 TAATATTTAA
1 TAATATTTAA
3035576 TTTATTTAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 17
0.70 0.10 0.20
Matches are distributed among these distances:
10 3 0.05
11 6 0.10
12 10 0.17
13 10 0.17
14 25 0.43
15 4 0.07
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (14 bp):
TAATATTTAAAAAT
Found at i:3035567 original size:40 final size:38
Alignment explanation
Indices: 3035488--3035572 Score: 118
Period size: 40 Copynumber: 2.2 Consensus size: 38
3035478 ATCTATAATA
* *
3035488 TAATATTAAAAATTAATATTTAATTTATTTTAAAAAAT
1 TAATATTAAAAATTAATATTTAATTAATATTAAAAAAT
3035526 TAATATT-AAAATTAATATCTATAATATAATATTAAAAAAT
1 TAATATTAAAAATTAATAT-T-TAAT-TAATATTAAAAAAT
3035566 TAATATT
1 TAATATT
3035573 TAATTTATTT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
37 11 0.26
38 8 0.19
39 4 0.10
40 19 0.45
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (38 bp):
TAATATTAAAAATTAATATTTAATTAATATTAAAAAAT
Found at i:3035572 original size:65 final size:64
Alignment explanation
Indices: 3035467--3035623 Score: 250
Period size: 64 Copynumber: 2.5 Consensus size: 64
3035457 TTATATGATA
3035467 TAAAATTAAATATCTATAATATAATATT-AAAAATTAATATTTAATTTATTTTAAAAAATTAATA
1 TAAAATT-AATATCTATAATATAATATTAAAAAATTAATATTTAATTTA-TTTAAAAAATTAATA
3035531 T
64 T
3035532 TAAAATTAATATCTATAATATAATATTAAAAAATTAATATTTAATTTATTTAAAAAATTAATAT
1 TAAAATTAATATCTATAATATAATATTAAAAAATTAATATTTAATTTATTTAAAAAATTAATAT
* *
3035596 TAAACTTAAAATC-A-AATATAATA-TAAAA
1 TAAAATTAATATCTATAATATAATATTAAAA
3035624 TTAAATATAA
Statistics
Matches: 89, Mismatches: 2, Indels: 6
0.92 0.02 0.06
Matches are distributed among these distances:
61 5 0.06
62 9 0.10
63 1 0.01
64 47 0.53
65 27 0.30
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (64 bp):
TAAAATTAATATCTATAATATAATATTAAAAAATTAATATTTAATTTATTTAAAAAATTAATAT
Found at i:3035576 original size:26 final size:26
Alignment explanation
Indices: 3035523--3035597 Score: 95
Period size: 24 Copynumber: 3.0 Consensus size: 26
3035513 TATTTTAAAA
3035523 AATTAATATT--AAAATTAATATCTAT
1 AATTAATATTAAAAAATTAATAT-TAT
3035548 AATATAATATTAAAAAATTAATATT-T
1 AAT-TAATATTAAAAAATTAATATTAT
*
3035574 AATTTAT-TTAAAAAATTAATATTA
1 AATTAATATTAAAAAATTAATATTA
3035598 AACTTAAAAT
Statistics
Matches: 45, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
24 16 0.36
25 6 0.13
26 11 0.24
27 1 0.02
28 11 0.24
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (26 bp):
AATTAATATTAAAAAATTAATATTAT
Found at i:3047826 original size:2 final size:2
Alignment explanation
Indices: 3047819--3047876 Score: 107
Period size: 2 Copynumber: 29.0 Consensus size: 2
3047809 TAAATTAATA
3047819 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
3047861 AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT
3047877 TTCCCAATTC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3049773 original size:16 final size:16
Alignment explanation
Indices: 3049754--3049793 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
3049744 ATGTTCGTTT
3049754 ATGTTCGTGTTCATTA
1 ATGTTCGTGTTCATTA
* *
3049770 ATGTTCGTGTTCGTTT
1 ATGTTCGTGTTCATTA
3049786 ATGTTCGT
1 ATGTTCGT
3049794 TTATTTATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.12, C:0.12, G:0.23, T:0.53
Consensus pattern (16 bp):
ATGTTCGTGTTCATTA
Found at i:3060232 original size:20 final size:21
Alignment explanation
Indices: 3060207--3060246 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
3060197 TCGAGTTGTA
*
3060207 AAATAGAAT-TTGAATAACTT
1 AAATAGAATCTCGAATAACTT
*
3060227 AAATAGTATCTCGAATAACT
1 AAATAGAATCTCGAATAACT
3060247 CAACATTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.47, C:0.10, G:0.10, T:0.33
Consensus pattern (21 bp):
AAATAGAATCTCGAATAACTT
Found at i:3061067 original size:2 final size:2
Alignment explanation
Indices: 3061060--3061095 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
3061050 AGCTTTTCTT
3061060 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3061096 ACATAATAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:3061413 original size:95 final size:100
Alignment explanation
Indices: 3061152--3061530 Score: 448
Period size: 106 Copynumber: 3.7 Consensus size: 100
3061142 TAATTCAGTA
* * *
3061152 AAATAATTTGTTGACAACCAGTCGTCCCTTCTTTGTGAAGTTGAACTTGTG--GTCTCGAGTCCA
1 AAATTATTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCA
* * * *
3061215 ATATCCTTTTATGTGAAGTTGAAATTGACCCTGAAATTGGA
66 ATATCC-TTCACGT-AAGTTG--A--GACTCTGAAATTGGG
* *
3061256 AAATTATTTGTTGACAACCAGTCGTCCCTTCGTTGTGAAGTTGAACTTGTGTCGTCTCGAGTCCA
1 AAATTATTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCA
3061321 ATATCCTTCAC-T-A-TTG-G-CTCTGAAATTGGG
66 ATATCCTTCACGTAAGTTGAGACTCTGAAATTGGG
* * * *
3061351 AGATTGTTTGTTGACAACCAGCCGTCCCTTCATTGTGAAGTTGAACTTGTGTTGTCTTGAGTCCA
1 AAATTATTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCA
*
3061416 ATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAAATTGGG
66 ATATCCTTCAC-GT-AAGTTG--A--GACTCTGAAATTGGG
* *
3061457 AAATTATTTGTTGACAACCAGCCGTCCCTTCGTTATGAAGTTGAACTTGTGTTGTCCCGAGTCCA
1 AAATTATTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCA
*
3061522 ACATCCTTC
66 ATATCCTTC
3061531 GATGTGAAGT
Statistics
Matches: 242, Mismatches: 20, Indels: 24
0.85 0.07 0.08
Matches are distributed among these distances:
95 80 0.33
96 1 0.00
97 1 0.00
99 1 0.00
100 3 0.01
101 3 0.01
102 1 0.00
104 50 0.21
105 4 0.02
106 98 0.40
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (100 bp):
AAATTATTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCA
ATATCCTTCACGTAAGTTGAGACTCTGAAATTGGG
Found at i:3061501 original size:201 final size:199
Alignment explanation
Indices: 3061158--3061530 Score: 611
Period size: 201 Copynumber: 1.9 Consensus size: 199
3061148 AGTAAAATAA
* *
3061158 TTTGTTGACAACCAGTCGTCCCTTCTTTGTGAAGTTGAACTTGTGGTCTCGAGTCCAATATCCTT
1 TTTGTTGACAACCAGCCGTCCCTTCATTGTGAAGTTGAACTTGTGGTCTCGAGTCCAATATCCTT
** *
3061223 TTATGTGAAGTTGAAATTGACCCTGAAATTGGAAAATTATTTGTTGACAACCAGTCGTCCCTTCG
66 CGATGTGAAGTTGAAATTGACCCTGAAATTGGAAAATTATTTGTTGACAACCAGCCGTCCCTTCG
* * *
3061288 TTGTGAAGTTGAACTTGTGTCGTCTCGAGTCCAATATCCTTCACTATTGGCTCTGAAATTGGGAG
131 TTATGAAGTTGAACTTGTGTCGTCCCGAGTCCAACATCCTTCACTATTGGCTCTGAAATTGGGAG
3061353 ATTG
196 ATTG
*
3061357 TTTGTTGACAACCAGCCGTCCCTTCATTGTGAAGTTGAACTTGTGTTGTCTTGAGTCCAATATCC
1 TTTGTTGACAACCAGCCGTCCCTTCATTGTGAAGTTGAACTTGTG--GTCTCGAGTCCAATATCC
* * *
3061422 TTCGCTGTGAAGTTGAAATTGACTCTGAAATTGGGAAATTATTTGTTGACAACCAGCCGTCCCTT
64 TTCGATGTGAAGTTGAAATTGACCCTGAAATTGGAAAATTATTTGTTGACAACCAGCCGTCCCTT
*
3061487 CGTTATGAAGTTGAACTTGTGTTGTCCCGAGTCCAACATCCTTC
129 CGTTATGAAGTTGAACTTGTGTCGTCCCGAGTCCAACATCCTTC
3061531 GATGTGAAGT
Statistics
Matches: 159, Mismatches: 13, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
199 43 0.27
201 116 0.73
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.36
Consensus pattern (199 bp):
TTTGTTGACAACCAGCCGTCCCTTCATTGTGAAGTTGAACTTGTGGTCTCGAGTCCAATATCCTT
CGATGTGAAGTTGAAATTGACCCTGAAATTGGAAAATTATTTGTTGACAACCAGCCGTCCCTTCG
TTATGAAGTTGAACTTGTGTCGTCCCGAGTCCAACATCCTTCACTATTGGCTCTGAAATTGGGAG
ATTG
Found at i:3062183 original size:37 final size:37
Alignment explanation
Indices: 3062101--3062185 Score: 91
Period size: 37 Copynumber: 2.3 Consensus size: 37
3062091 GTTTCATGGG
* * * * **
3062101 AAACGGTCTCAAGGGAGACAAAATTTTGTTTTAAGAA
1 AAACTGTCTCAAGAGAGACAAAACTTAGTTCCAAGAA
3062138 AAACTGTCTCAAGAGAGACAAAACTTAGTTCCAA-AA
1 AAACTGTCTCAAGAGAGACAAAACTTAGTTCCAAGAA
*
3062174 GAAATTGTCTCA
1 -AAACTGTCTCA
3062186 CGGGGAGATG
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
36 2 0.05
37 38 0.95
ACGTcount: A:0.42, C:0.15, G:0.18, T:0.25
Consensus pattern (37 bp):
AAACTGTCTCAAGAGAGACAAAACTTAGTTCCAAGAA
Found at i:3064022 original size:17 final size:17
Alignment explanation
Indices: 3064002--3064046 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
3063992 TTCTTTTCTT
3064002 TTTTGTTCTTGTTTTTC
1 TTTTGTTCTTGTTTTTC
* *
3064019 TTTT-TTGCTTCTTTTTT
1 TTTTGTT-CTTGTTTTTC
3064036 TTTTGTTCTTG
1 TTTTGTTCTTG
3064047 ATTGAATCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
16 2 0.09
17 19 0.83
18 2 0.09
ACGTcount: A:0.00, C:0.11, G:0.11, T:0.78
Consensus pattern (17 bp):
TTTTGTTCTTGTTTTTC
Found at i:3064037 original size:20 final size:19
Alignment explanation
Indices: 3063995--3064036 Score: 68
Period size: 19 Copynumber: 2.2 Consensus size: 19
3063985 TTTTTGCTTC
3063995 TTTTCTTTTTTGTTCTTGT
1 TTTTCTTTTTTGTTCTTGT
3064014 TTTTCTTTTTTGCTTCTT-T
1 TTTTCTTTTTTG-TTCTTGT
3064033 TTTT
1 TTTT
3064037 TTTGTTCTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.00, C:0.12, G:0.07, T:0.81
Consensus pattern (19 bp):
TTTTCTTTTTTGTTCTTGT
Found at i:3067387 original size:24 final size:23
Alignment explanation
Indices: 3067354--3067416 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 23
3067344 AACAGTTAAT
*
3067354 AAAATAAAAATAAATAGAAATAAA
1 AAAATAAAAAAAAATAGAAA-AAA
* *
3067378 AAAATTAAAAAAAATGGAAAAAA
1 AAAATAAAAAAAAATAGAAAAAA
*
3067401 AATATAAGAGAAAAAA
1 AAAATAA-A-AAAAAA
3067417 AATGGTTAGG
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
23 8 0.25
24 18 0.56
25 6 0.19
ACGTcount: A:0.78, C:0.00, G:0.08, T:0.14
Consensus pattern (23 bp):
AAAATAAAAAAAAATAGAAAAAA
Found at i:3068503 original size:36 final size:35
Alignment explanation
Indices: 3068416--3068509 Score: 89
Period size: 38 Copynumber: 2.5 Consensus size: 35
3068406 TATATATAGT
*
3068416 AATATTTGAAAAATGAAAAAAATATACATATACATCA
1 AATATTT-AAAAAT-AAAAAAATATACATATACAACA
* ** *
3068453 AAGTATTAATAAAATAAATAAGCTATATATATACAACA
1 AA-TATTTA-AAAATAAA-AAAATATACATATACAACA
*
3068491 AATATTTAAAAATAGAAAA
1 AATATTTAAAAATAAAAAA
3068510 GTTACCCTCT
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
35 2 0.04
36 7 0.15
37 11 0.24
38 26 0.57
ACGTcount: A:0.61, C:0.06, G:0.05, T:0.28
Consensus pattern (35 bp):
AATATTTAAAAATAAAAAAATATACATATACAACA
Found at i:3068730 original size:10 final size:10
Alignment explanation
Indices: 3068715--3068763 Score: 62
Period size: 10 Copynumber: 4.9 Consensus size: 10
3068705 ACGAAAATAA
*
3068715 ATAAATAAAT
1 ATAAATATAT
3068725 ATAAATATAT
1 ATAAATATAT
*
3068735 ATATATATAT
1 ATAAATATAT
*
3068745 ATATATATAT
1 ATAAATATAT
*
3068755 ATATATATA
1 ATAAATATA
3068764 AAGTTATAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 37 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (10 bp):
ATAAATATAT
Found at i:3068734 original size:8 final size:8
Alignment explanation
Indices: 3068711--3068779 Score: 52
Period size: 8 Copynumber: 8.2 Consensus size: 8
3068701 AAAAACGAAA
*
3068711 ATAAATAA
1 ATAAATAT
3068719 ATAAATAT
1 ATAAATAT
3068727 A-AATATAT
1 ATAA-ATAT
3068735 ATATATATAT
1 ATA-A-ATAT
*
3068745 ATATATAT
1 ATAAATAT
*
3068753 ATATATAT
1 ATAAATAT
3068761 ATAAAGT-T
1 ATAAA-TAT
3068769 ATAAGATAT
1 ATAA-ATAT
3068778 AT
1 AT
3068780 TACGTAAATA
Statistics
Matches: 52, Mismatches: 3, Indels: 11
0.79 0.05 0.17
Matches are distributed among these distances:
7 2 0.04
8 35 0.67
9 6 0.12
10 9 0.17
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.41
Consensus pattern (8 bp):
ATAAATAT
Found at i:3068779 original size:2 final size:2
Alignment explanation
Indices: 3068723--3068763 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
3068713 AAATAAATAA
*
3068723 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
3068764 AAGTTATAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:3068911 original size:88 final size:83
Alignment explanation
Indices: 3068795--3068970 Score: 198
Period size: 88 Copynumber: 2.1 Consensus size: 83
3068785 AAATAATCAA
* * *
3068795 ATAAAAATAATTAAGAATATATATTAATAATAG-GTATATAAATAAACTATTAAAAGTATAAAAA
1 ATAAAAATAATTAAGAATATATAGTAATAATAGACT-TATAAATAAAATATT-AAAG---AAAAA
3068859 TATATATATATATATATAACTAG
61 TATATATATATATATATAACTAG
* * *
3068882 ATAAAGATAATTACA-ATATATATAGTAATAATAGACTTATAAGTAAAATATTAAAGAAATATAT
1 ATAAAAATAATTA-AGA-ATATATAGTAATAATAGACTTATAAATAAAATATTAAAGAAAAATAT
3068946 ATATATATATATAATAA-TA-
64 ATATATATATAT-ATAACTAG
3068965 ATAAAA
1 ATAAAA
3068971 TATAGTAAAA
Statistics
Matches: 78, Mismatches: 7, Indels: 12
0.80 0.07 0.12
Matches are distributed among these distances:
83 5 0.06
84 21 0.27
85 4 0.05
87 17 0.22
88 30 0.38
89 1 0.01
ACGTcount: A:0.58, C:0.02, G:0.06, T:0.34
Consensus pattern (83 bp):
ATAAAAATAATTAAGAATATATAGTAATAATAGACTTATAAATAAAATATTAAAGAAAAATATAT
ATATATATATATAACTAG
Found at i:3069036 original size:18 final size:17
Alignment explanation
Indices: 3069013--3069055 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
3069003 ATATATACGT
3069013 ATAATAATAATAACATGA
1 ATAATAATAATAA-ATGA
*
3069031 ATAATAAAAATAAATGA
1 ATAATAATAATAAATGA
3069048 ATAA-AATA
1 ATAATAATA
3069056 TCCATATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 3 0.13
17 8 0.35
18 12 0.52
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.26
Consensus pattern (17 bp):
ATAATAATAATAAATGA
Found at i:3073457 original size:43 final size:45
Alignment explanation
Indices: 3073386--3073492 Score: 148
Period size: 46 Copynumber: 2.4 Consensus size: 45
3073376 ATTTGCAAAC
*
3073386 CCTTGCCGTTTTTC-GGTTGTAAAAGC-T-ATATTATTCGTAATAT
1 CCTTGCC-TTTTTCTGGTTATAAAAGCATAATATTATTCGTAATAT
*
3073429 CCTTGCCTTTTTCTGGTTATAAACGCTATAATATTATTCGTAATAT
1 CCTTGCCTTTTTCTGGTTATAAAAGC-ATAATATTATTCGTAATAT
*
3073475 CCTTGCCTTTTTATGGTT
1 CCTTGCCTTTTTCTGGTT
3073493 TGTGAACGCT
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
42 6 0.11
43 17 0.30
45 1 0.02
46 33 0.58
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.47
Consensus pattern (45 bp):
CCTTGCCTTTTTCTGGTTATAAAAGCATAATATTATTCGTAATAT
Found at i:3073471 original size:46 final size:47
Alignment explanation
Indices: 3073413--3073506 Score: 154
Period size: 46 Copynumber: 2.0 Consensus size: 47
3073403 TGTAAAAGCT
*
3073413 ATATTATTCGTAATATCCTTGCCTTTTTCTGG-TTATAAACGCTATA
1 ATATTATTCGTAATATCCTTGCCTTTTTATGGTTTATAAACGCTATA
* *
3073459 ATATTATTCGTAATATCCTTGCCTTTTTATGGTTTGTGAACGCTATA
1 ATATTATTCGTAATATCCTTGCCTTTTTATGGTTTATAAACGCTATA
3073506 A
1 A
3073507 CATCATTTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
46 31 0.70
47 13 0.30
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.46
Consensus pattern (47 bp):
ATATTATTCGTAATATCCTTGCCTTTTTATGGTTTATAAACGCTATA
Found at i:3073520 original size:47 final size:46
Alignment explanation
Indices: 3073418--3073520 Score: 125
Period size: 46 Copynumber: 2.2 Consensus size: 46
3073408 AAGCTATATT
* * * *
3073418 ATTCGTAATATCCTTGCCTTTTTCTGGTTATAAACGCTATAATATT
1 ATTCATAATATCCTTGCCTTTTTATGGTTATAAACGCTATAACATC
* * *
3073464 ATTCGTAATATCCTTGCCTTTTTATGGTTTGTGAACGCTATAACATC
1 ATTCATAATATCCTTGCCTTTTTATGG-TTATAAACGCTATAACATC
*
3073511 ATTTATAATA
1 ATTCATAATA
3073521 ATAAGAATAT
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
46 26 0.53
47 23 0.47
ACGTcount: A:0.27, C:0.17, G:0.12, T:0.45
Consensus pattern (46 bp):
ATTCATAATATCCTTGCCTTTTTATGGTTATAAACGCTATAACATC
Found at i:3074676 original size:15 final size:15
Alignment explanation
Indices: 3074658--3074712 Score: 76
Period size: 15 Copynumber: 3.6 Consensus size: 15
3074648 TTAAAAAATT
3074658 AATATTATTTATGTC
1 AATATTATTTATGTC
*
3074673 AATATTATTTAATAT-
1 AATATTATTT-ATGTC
3074688 ATATATTATTTATGTC
1 A-ATATTATTTATGTC
3074704 AATATTATT
1 AATATTATT
3074713 ATTAAAATGT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
15 22 0.63
16 13 0.37
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.55
Consensus pattern (15 bp):
AATATTATTTATGTC
Found at i:3074872 original size:30 final size:32
Alignment explanation
Indices: 3074833--3074895 Score: 85
Period size: 30 Copynumber: 2.0 Consensus size: 32
3074823 TTATAATACA
* *
3074833 ATTAAATTATATTTTTATAATT-TTAA-AAAT
1 ATTAAATTATATTATTAAAATTATTAATAAAT
*
3074863 ATTATATTATATTATTAAAATTATTAATAAAT
1 ATTAAATTATATTATTAAAATTATTAATAAAT
3074895 A
1 A
3074896 ATCCATCCCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 19 0.68
31 4 0.14
32 5 0.18
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (32 bp):
ATTAAATTATATTATTAAAATTATTAATAAAT
Found at i:3074880 original size:22 final size:22
Alignment explanation
Indices: 3074847--3074888 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
3074837 AATTATATTT
3074847 TTATAATTTTAAAAATATTATA
1 TTATAATTTTAAAAATATTATA
*
3074869 TTAT-ATTATTAAAATTATTA
1 TTATAATT-TTAAAAATATTA
3074889 ATAAATAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
TTATAATTTTAAAAATATTATA
Found at i:3077099 original size:13 final size:13
Alignment explanation
Indices: 3077078--3077112 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
3077068 ATATAAACAA
*
3077078 TTAATCAAATTAG
1 TTAATCAAATCAG
*
3077091 TTTATCAAATCAG
1 TTAATCAAATCAG
3077104 TTAATCAAA
1 TTAATCAAA
3077113 CCAGCTACTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.46, C:0.11, G:0.06, T:0.37
Consensus pattern (13 bp):
TTAATCAAATCAG
Found at i:3079147 original size:23 final size:23
Alignment explanation
Indices: 3079121--3079167 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
3079111 CAATATCGAT
3079121 ACCAAGGGTAAAGTCTGAGCTTA
1 ACCAAGGGTAAAGTCTGAGCTTA
3079144 ACCAAGGGTAAAGTCTGAGCTTA
1 ACCAAGGGTAAAGTCTGAGCTTA
3079167 A
1 A
3079168 AGCAAGATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.21
Consensus pattern (23 bp):
ACCAAGGGTAAAGTCTGAGCTTA
Found at i:3083113 original size:60 final size:61
Alignment explanation
Indices: 3082981--3083129 Score: 153
Period size: 60 Copynumber: 2.5 Consensus size: 61
3082971 TCTTTTCTGA
* * * * * *
3082981 AAAAGT-ACAGATCATGAAGCACACCTTTGCGGGGTTTTGTTCAAACTGGTGCCACGGTGG
1 AAAAGTCACGGATCATGAAGCACGCCTTCGCGGGGTTCTGTTCAAACTGGCGCCACGGTAG
** *
3083041 AAAAG-CGTGGATCATGAAGCACGCCTTCGCGGGGTTCT-TTCAAAGCTGGCGCCA-TGTAG
1 AAAAGTCACGGATCATGAAGCACGCCTTCGCGGGGTTCTGTTCAAA-CTGGCGCCACGGTAG
* * *
3083100 TAAAGTCACGGATCATGAAGCGCGCATTCG
1 AAAAGTCACGGATCATGAAGCACGCCTTCG
3083130 TTGGGAAATC
Statistics
Matches: 72, Mismatches: 14, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
59 13 0.18
60 59 0.82
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (61 bp):
AAAAGTCACGGATCATGAAGCACGCCTTCGCGGGGTTCTGTTCAAACTGGCGCCACGGTAG
Found at i:3087030 original size:2 final size:2
Alignment explanation
Indices: 3087018--3087053 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
3087008 TATCTTTAAT
*
3087018 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3087054 GAATTTATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:3089215 original size:48 final size:48
Alignment explanation
Indices: 3089156--3089275 Score: 161
Period size: 48 Copynumber: 2.5 Consensus size: 48
3089146 GTTGTCGGAC
* * **
3089156 TCTTGTCTTCCGGGAGGAGGTGCTAGA-CTTTGAGTTGTGTTATTGGAT
1 TCTTGTCTTCCGGGAGGAGGTGCTAAACCTTT-ACTTGTGTTATCAGAT
* * *
3089204 TCTTGTGTTCCGGGAGGAGGTACTAAACCTTTACTTGTGTTGTCAGAT
1 TCTTGTCTTCCGGGAGGAGGTGCTAAACCTTTACTTGTGTTATCAGAT
3089252 TCTTGTCTTCCGGGAGGAGGTGCT
1 TCTTGTCTTCCGGGAGGAGGTGCT
3089276 CGGAGTGCTG
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
48 58 0.94
49 4 0.06
ACGTcount: A:0.15, C:0.16, G:0.32, T:0.38
Consensus pattern (48 bp):
TCTTGTCTTCCGGGAGGAGGTGCTAAACCTTTACTTGTGTTATCAGAT
Found at i:3093743 original size:18 final size:18
Alignment explanation
Indices: 3093722--3093763 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
3093712 TATATTTTTT
3093722 ATTTTATCAAAAAA-TTC
1 ATTTTATCAAAAAACTTC
* *
3093739 AATTTTTTTAAAAAACTTC
1 -ATTTTATCAAAAAACTTC
3093758 ATTTTA
1 ATTTTA
3093764 ACATACTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 17 0.85
19 3 0.15
ACGTcount: A:0.43, C:0.10, G:0.00, T:0.48
Consensus pattern (18 bp):
ATTTTATCAAAAAACTTC
Found at i:3093815 original size:27 final size:25
Alignment explanation
Indices: 3093785--3093841 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 25
3093775 GATAATTATT
3093785 ATTATTAATAAT-TGTATTAAAAATATA
1 ATTATT-ATAATAT-TATTAAAAA-ATA
*
3093812 ATTAATTATAATATTATTAAACAATA
1 ATT-ATTATAATATTATTAAAAAATA
3093838 ATTA
1 ATTA
3093842 GGAACATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
25 1 0.04
26 6 0.22
27 16 0.59
28 4 0.15
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (25 bp):
ATTATTATAATATTATTAAAAAATA
Found at i:3094307 original size:16 final size:16
Alignment explanation
Indices: 3094273--3094304 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
3094263 TGATATAACT
3094273 ATAATTTTATACTTTA
1 ATAATTTTATACTTTA
3094289 ATAATTTTATA-TTTA
1 ATAATTTTATACTTTA
3094304 A
1 A
3094305 ATATCTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (16 bp):
ATAATTTTATACTTTA
Found at i:3099437 original size:30 final size:31
Alignment explanation
Indices: 3099381--3099438 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
3099371 AAATTACATA
*
3099381 TTTAGTACTTAAAATATCAGTTTTTTTCCGT
1 TTTAGTACCTAAAATATCAGTTTTTTTCCGT
* *
3099412 TTTAGTACCTAAACTTTCA-TTTTTTTC
1 TTTAGTACCTAAAATATCAGTTTTTTTC
3099439 AAAACCAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 8 0.33
31 16 0.67
ACGTcount: A:0.24, C:0.16, G:0.07, T:0.53
Consensus pattern (31 bp):
TTTAGTACCTAAAATATCAGTTTTTTTCCGT
Found at i:3100926 original size:20 final size:21
Alignment explanation
Indices: 3100901--3100952 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
3100891 TTTTCCCAAT
*
3100901 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
3100921 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
3100942 TCGCAATGCGA
1 TCGCAATGCGA
3100953 TACTGACTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:3100966 original size:20 final size:20
Alignment explanation
Indices: 3100941--3101075 Score: 112
Period size: 20 Copynumber: 6.7 Consensus size: 20
3100931 AATTGGGAAA
3100941 ATCGCAATGCGATACTGACT
1 ATCGCAATGCGATACTGACT
*
3100961 ATCGCAATGCGATACTTACT
1 ATCGCAATGCGATACTGACT
* *
3100981 ATCGCAATGCGATAAT-ACAAA
1 ATCGCAATGCGATACTGAC--T
* **
3101002 ATCGCAACGAAATACTGACT
1 ATCGCAATGCGATACTGACT
* * *
3101022 TTCGCAACGCGATTCTGACT
1 ATCGCAATGCGATACTGACT
* * *
3101042 TTCGCAACGCGATAAT-ACAT
1 ATCGCAATGCGATACTGAC-T
3101062 AATCGCAATGCGAT
1 -ATCGCAATGCGAT
3101076 TTTCAAAGCG
Statistics
Matches: 94, Mismatches: 16, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
19 4 0.04
20 65 0.69
21 23 0.24
22 2 0.02
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.24
Consensus pattern (20 bp):
ATCGCAATGCGATACTGACT
Found at i:3100985 original size:61 final size:61
Alignment explanation
Indices: 3100938--3101069 Score: 174
Period size: 61 Copynumber: 2.2 Consensus size: 61
3100928 GCGAATTGGG
* ** * * *
3100938 AAAATCGCAATGCGATACTGACTATCGCAATGCGATACTTACTATCGCAATGCGATAATAC
1 AAAATCGCAACGAAATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
* * *
3100999 AAAATCGCAACGAAATACTGACTTTCGCAACGCGATTCTGACTTTCGCAACGCGATAATAC
1 AAAATCGCAACGAAATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
*
3101060 ATAATCGCAA
1 AAAATCGCAA
3101070 TGCGATTTTC
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.23
Consensus pattern (61 bp):
AAAATCGCAACGAAATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
Found at i:3101263 original size:22 final size:22
Alignment explanation
Indices: 3101235--3101278 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
3101225 CCATCTCTCA
3101235 CCCATCTCCGACGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
*
3101257 CCCATCTCCGGCGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
3101279 TATCTCCATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.45, G:0.16, T:0.18
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:3101567 original size:20 final size:20
Alignment explanation
Indices: 3101542--3101579 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
3101532 CGATTCTCTC
3101542 GTTGCGATAGTCATTTTCGT
1 GTTGCGATAGTCATTTTCGT
**
3101562 GTTGCGATTTTCATTTTC
1 GTTGCGATAGTCATTTTC
3101580 AGAAACTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.16, G:0.21, T:0.50
Consensus pattern (20 bp):
GTTGCGATAGTCATTTTCGT
Found at i:3101770 original size:25 final size:24
Alignment explanation
Indices: 3101716--3101770 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
3101706 TGTTTATTAT
* *
3101716 TGTTTTTGGTATATCTTCACAGTG
1 TGTTTTTGGTATATCTTAACAGTA
3101740 TAGTTTTTGGTATATC-TAACTTAGTA
1 T-GTTTTTGGTATATCTTAAC--AGTA
3101766 TGTTT
1 TGTTT
3101771 ATTGTTTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 4 0.15
25 18 0.69
26 4 0.15
ACGTcount: A:0.20, C:0.09, G:0.18, T:0.53
Consensus pattern (24 bp):
TGTTTTTGGTATATCTTAACAGTA
Done.