Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008065.1 Hibiscus syriacus cultivar Beakdansim tig00110562_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 676718
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.34
File 1 of 3
Found at i:6060 original size:14 final size:15
Alignment explanation
Indices: 6025--6063 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
6015 CATAAGTTGC
*
6025 AAATTTAGTTCCTAT
1 AAATTTAGTCCCTAT
6040 AAATTTAGTCCCTAT
1 AAATTTAGTCCCTAT
6055 -AATTTAGTC
1 AAATTTAGTC
6064 ATATTATTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 9 0.39
15 14 0.61
ACGTcount: A:0.33, C:0.15, G:0.08, T:0.44
Consensus pattern (15 bp):
AAATTTAGTCCCTAT
Found at i:28008 original size:15 final size:15
Alignment explanation
Indices: 27953--28008 Score: 50
Period size: 15 Copynumber: 3.9 Consensus size: 15
27943 CGGAAAAAAT
27953 ATAAAATTTA-AAAC
1 ATAAAATTTATAAAC
*
27967 TTAAAAATTTATAATAC
1 AT-AAAATTTATAA-AC
27984 AT--AA--TATAAAC
1 ATAAAATTTATAAAC
27995 ATAAAATTTATAAA
1 ATAAAATTTATAAA
28009 TTCAACTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 13
0.69 0.04 0.27
Matches are distributed among these distances:
11 4 0.12
12 5 0.15
13 2 0.06
14 3 0.09
15 14 0.42
16 2 0.06
17 3 0.09
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (15 bp):
ATAAAATTTATAAAC
Found at i:28097 original size:19 final size:19
Alignment explanation
Indices: 28073--28119 Score: 94
Period size: 19 Copynumber: 2.5 Consensus size: 19
28063 AACTAAATTT
28073 GAAATAATTGAGATTAAAA
1 GAAATAATTGAGATTAAAA
28092 GAAATAATTGAGATTAAAA
1 GAAATAATTGAGATTAAAA
28111 GAAATAATT
1 GAAATAATT
28120 TAATAAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.57, C:0.00, G:0.15, T:0.28
Consensus pattern (19 bp):
GAAATAATTGAGATTAAAA
Found at i:30843 original size:14 final size:14
Alignment explanation
Indices: 30824--30850 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
30814 CTAAGTGATT
30824 ATGTGATCATCGAC
1 ATGTGATCATCGAC
30838 ATGTGATCATCGA
1 ATGTGATCATCGA
30851 TGATGTTACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (14 bp):
ATGTGATCATCGAC
Found at i:46187 original size:16 final size:16
Alignment explanation
Indices: 46166--46199 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
46156 CAGCCCAGGA
46166 CAGCATGTAAGGGCAT
1 CAGCATGTAAGGGCAT
*
46182 CAGCATGTAGGGGCAT
1 CAGCATGTAAGGGCAT
46198 CA
1 CA
46200 TTTTCTAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.21, G:0.32, T:0.18
Consensus pattern (16 bp):
CAGCATGTAAGGGCAT
Found at i:52405 original size:21 final size:21
Alignment explanation
Indices: 52354--52411 Score: 80
Period size: 21 Copynumber: 2.8 Consensus size: 21
52344 TCGTTGATCA
52354 TTATGATGTTGATGTGATACT
1 TTATGATGTTGATGTGATACT
* * *
52375 TTACGGTGTTGATGTGATATT
1 TTATGATGTTGATGTGATACT
*
52396 TTATAATGTTGATGTG
1 TTATGATGTTGATGTG
52412 GTGATCTACG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.22, C:0.03, G:0.26, T:0.48
Consensus pattern (21 bp):
TTATGATGTTGATGTGATACT
Found at i:52435 original size:42 final size:42
Alignment explanation
Indices: 52354--52435 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
52344 TCGTTGATCA
* * **
52354 TTATGATGTTGATGTGATACTTTACGGTGTTGATGTGATATT
1 TTATAATGTTGATGTGATACTCTACGGTGTTGACATGATATT
*
52396 TTATAATGTTGATGTGGTGA-TCTACGGTGTTGACATGATA
1 TTATAATGTTGATGTGAT-ACTCTACGGTGTTGACATGATA
52436 ATTCACAGTG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 33 0.97
43 1 0.03
ACGTcount: A:0.23, C:0.06, G:0.27, T:0.44
Consensus pattern (42 bp):
TTATAATGTTGATGTGATACTCTACGGTGTTGACATGATATT
Found at i:52725 original size:23 final size:24
Alignment explanation
Indices: 52693--52749 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
52683 TTATTTTTGG
** *
52693 TATTTATTATA-TTTAGTTTTAGAA
1 TATTT-TTATATTTTAAATTTAAAA
52717 TATTTTTATATTTTAAATTTAAAA
1 TATTTTTATATTTTAAATTTAAAA
52741 TATTTTTAT
1 TATTTTTAT
52750 TAAAAAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 5 0.17
24 24 0.83
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (24 bp):
TATTTTTATATTTTAAATTTAAAA
Found at i:61951 original size:16 final size:17
Alignment explanation
Indices: 61921--61954 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
61911 CAGAAAAACA
61921 AAAAAATTATATTATAT
1 AAAAAATTATATTATAT
*
61938 AAAAAA-TATGTTATAT
1 AAAAAATTATATTATAT
61954 A
1 A
61955 CTTTTTTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (17 bp):
AAAAAATTATATTATAT
Found at i:62868 original size:2 final size:2
Alignment explanation
Indices: 62861--62885 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
62851 AATTTTGGTT
62861 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
62886 TTTTTTAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:65184 original size:20 final size:20
Alignment explanation
Indices: 65147--65184 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
65137 TCACGGTCCG
* *
65147 ATCCGGTTCGAGCGGTTCAA
1 ATCCGGTTCGAACAGTTCAA
65167 ATCCGGTTCGAACAGTTC
1 ATCCGGTTCGAACAGTTC
65185 CTTGCGGTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.26
Consensus pattern (20 bp):
ATCCGGTTCGAACAGTTCAA
Found at i:68058 original size:22 final size:21
Alignment explanation
Indices: 68018--68060 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
68008 ATGAGGTCGA
68018 GTTTAAATTTGATTAAATTAT
1 GTTTAAATTTGATTAAATTAT
* *
68039 GTTTAACTTATGATTGAATTAT
1 GTTTAAATT-TGATTAAATTAT
68061 ACTTCTGCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.35, C:0.02, G:0.12, T:0.51
Consensus pattern (21 bp):
GTTTAAATTTGATTAAATTAT
Found at i:76386 original size:7 final size:7
Alignment explanation
Indices: 76371--76406 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
76361 GTATATATTT
76371 TTAAAAA
1 TTAAAAA
*
76378 TTAATAAT
1 TTAA-AAA
76386 TTAAAAA
1 TTAAAAA
76393 TTAAAAA
1 TTAAAAA
76400 TTAAAAA
1 TTAAAAA
76407 CCGGGTACCC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 20 0.77
8 6 0.23
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (7 bp):
TTAAAAA
Found at i:76390 original size:15 final size:14
Alignment explanation
Indices: 76370--76406 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 14
76360 TGTATATATT
76370 TTTAAAAATTAATAA
1 TTTAAAAATTAA-AA
76385 TTTAAAAATTAAAA
1 TTTAAAAATTAAAA
*
76399 ATTAAAAA
1 TTTAAAAA
76407 CCGGGTACCC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (14 bp):
TTTAAAAATTAAAA
Found at i:86995 original size:3 final size:3
Alignment explanation
Indices: 86987--87083 Score: 97
Period size: 3 Copynumber: 31.7 Consensus size: 3
86977 GGCCCGTTTG
* * *
86987 TAA TAA TAA TTAA TAA TAA TAT TAG TAA TAAA TAA TAA -AA TTAG TAA
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA -TAA TAA
* * * *
87034 TTA TAA TTA TAA TAA TAA TTA TAA TTA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
87082 TA
1 TA
87084 TTTAAATGAA
Statistics
Matches: 77, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
2 2 0.03
3 68 0.88
4 7 0.09
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:88441 original size:113 final size:113
Alignment explanation
Indices: 87333--88434 Score: 2053
Period size: 113 Copynumber: 9.7 Consensus size: 113
87323 TCTTGATGAG
* * *
87333 TTCTTCTCATTATGAACTTCTTCCTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAC
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTATGAAC-CTTC
* * * *
87398 -CTGGCAATGTTGATCCATCAAATGATGAATTCAAGCAAAAGGTTGAACAAA
62 TCTGGCAATGATAATCCATCAAGTGATGAATTCAAACAAAAGGTTGAACAAA
* * *
87449 TTCTTCTCATTATGAATTTCTTCTTCTTTATTCAGATGAGTTCTTCTCATTATGAACATTCTCTG
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTG
87514 GCAATGATAATCCATCAAGTGATGAATTCAAACAAAAGGTTGAACAAA
66 GCAATGATAATCCATCAAGTGATGAATTCAAACAAAAGGTTGAACAAA
87562 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTG
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTG
87627 GCAATGATAATCCATCAAGTGATGAATTCAAACAAAAGGTTGAACAAA
66 GCAATGATAATCCATCAAGTGATGAATTCAAACAAAAGGTTGAACAAA
87675 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTG
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTG
87740 GCAATGATAATCCATCAAGTGATGAATTCAAACAAAAGGTTGAACAAA
66 GCAATGATAATCCATCAAGTGATGAATTCAAACAAAAGGTTGAACAAA
87788 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTG
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTG
87853 GCAATGATAATCCATCAAGTGATGAATTCAAACAAAAGGTTGAACAAA
66 GCAATGATAATCCATCAAGTGATGAATTCAAACAAAAGGTTGAACAAA
87901 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTG
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTG
87966 GCAATGATAATCCATCAAGTGATGAATTCAAACAAAAGGTTGAACAAA
66 GCAATGATAATCCATCAAGTGATGAATTCAAACAAAAGGTTGAACAAA
88014 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTG
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTG
88079 GCAATGATAATCCATCAAGTGATGAATTCAAACAAAAGGTTGAACAAA
66 GCAATGATAATCCATCAAGTGATGAATTCAAACAAAAGGTTGAACAAA
88127 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTG
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTG
*
88192 GCAATGATAATCCATCAAGTGATGAATTCAAATAAAAGGTTGAACAAA
66 GCAATGATAATCCATCAAGTGATGAATTCAAACAAAAGGTTGAACAAA
88240 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTG
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTG
88305 GCAATGATAATCCATCAAGTGATGAATTCAAACAAAAGGTTGAACAAA
66 GCAATGATAATCCATCAAGTGATGAATTCAAACAAAAGGTTGAACAAA
88353 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTG
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTG
*
88418 GCAATGATGATCCATCA
66 GCAATGATAATCCATCA
88435 TATGATGGAT
Statistics
Matches: 969, Mismatches: 16, Indels: 5
0.98 0.02 0.01
Matches are distributed among these distances:
112 2 0.00
113 934 0.96
116 33 0.03
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (113 bp):
TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTG
GCAATGATAATCCATCAAGTGATGAATTCAAACAAAAGGTTGAACAAA
Found at i:88873 original size:22 final size:22
Alignment explanation
Indices: 88848--88902 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
88838 CATAAAGTTT
*
88848 TCATCTTTGAAAAGAGAATCTG
1 TCATCTTTGAAAAGAGAATCTA
*
88870 TCATCTTTAAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
*
88892 CCATCTTTGAA
1 TCATCTTTGAA
88903 GAGTGTAGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:91709 original size:115 final size:114
Alignment explanation
Indices: 91395--91735 Score: 574
Period size: 114 Copynumber: 3.0 Consensus size: 114
91385 GATCATGCAG
* * * * * * *
91395 TTCATCTTTCAATTCCAATGATCGGTTCTGGGGTTCCTACCGAATCAGATCAGATAACTCAAAGA
1 TTCATCTTTAAAATCCAATGATTGGTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
* * *
91460 ACACTTTCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAA
66 ACACTTCCAGAAGATGCTATTGAGTCTTCTTATTTCTACTATGAGCAAA
*
91509 TTCATCTTTTAAATCCAATGATTGGTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
1 TTCATCTTTAAAATCCAATGATTGGTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
91574 ACACTTCCAGAAGATGCTATTGAGTCTTCTTATTTCTACTATGAGCAAA
66 ACACTTCCAGAAGATGCTATTGAGTCTTCTTATTTCTACTATGAGCAAA
91623 TTCATCTTTAAAATCCAATGATTGGTTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAG
1 TTCATCTTTAAAATCCAATGATTGG-TTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAG
91688 AACACTTCCAGAAGATGCTATTGAGTCTTCTTATTTCTACTATGAGCA
65 AACACTTCCAGAAGATGCTATTGAGTCTTCTTATTTCTACTATGAGCA
91736 CATGGCACTT
Statistics
Matches: 215, Mismatches: 11, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
114 128 0.60
115 87 0.40
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (114 bp):
TTCATCTTTAAAATCCAATGATTGGTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
ACACTTCCAGAAGATGCTATTGAGTCTTCTTATTTCTACTATGAGCAAA
Found at i:94010 original size:12 final size:11
Alignment explanation
Indices: 93989--94019 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
93979 TCAATTTTCC
93989 TTTTTTCTTTT
1 TTTTTTCTTTT
*
94000 TTTTTTCCTTT
1 TTTTTTCTTTT
94011 TTTTTTCTT
1 TTTTTTCTT
94020 CTTTCTTTGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (11 bp):
TTTTTTCTTTT
Found at i:100321 original size:3 final size:3
Alignment explanation
Indices: 100313--100405 Score: 98
Period size: 3 Copynumber: 30.3 Consensus size: 3
100303 GGCCCGTTTG
* * *
100313 TAA TAA TAA TTAA TAA TAA TAT TAG TAA TAAA TAA TAA -AA TTAG TAA
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA -TAA TAA
* * *
100360 TTA TAA TTA TAA TAA TAA TTA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
100406 TAAATGAAAA
Statistics
Matches: 75, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
2 2 0.03
3 66 0.88
4 7 0.09
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:104199 original size:7 final size:7
Alignment explanation
Indices: 104187--104293 Score: 51
Period size: 7 Copynumber: 15.3 Consensus size: 7
104177 TATACCTTAA
104187 CCTAAAT
1 CCTAAAT
104194 CCTAAAT
1 CCTAAAT
* *
104201 TCTAAAC
1 CCTAAAT
*
104208 CCTAAAC
1 CCTAAAT
104215 CCTAAA-
1 CCTAAAT
104221 CCTTAAAT
1 CC-TAAAT
* *
104229 CTTAAAA
1 CCTAAAT
104236 CCTAAA-
1 CCTAAAT
104242 CACTAAA-
1 C-CTAAAT
*
104249 CCTTAAT
1 CCTAAAT
104256 CC-ATAAT
1 CCTA-AAT
* *
104263 CTATAAAC
1 C-CTAAAT
*
104271 CCTAAAC
1 CCTAAAT
*
104278 CCTAAAC
1 CCTAAAT
*
104285 CCTTAAT
1 CCTAAAT
104292 CC
1 CC
104294 AATTATATAA
Statistics
Matches: 80, Mismatches: 13, Indels: 14
0.75 0.12 0.13
Matches are distributed among these distances:
6 7 0.09
7 68 0.85
8 4 0.05
9 1 0.01
ACGTcount: A:0.43, C:0.32, G:0.00, T:0.25
Consensus pattern (7 bp):
CCTAAAT
Found at i:104227 original size:28 final size:30
Alignment explanation
Indices: 104187--104290 Score: 92
Period size: 28 Copynumber: 3.4 Consensus size: 30
104177 TATACCTTAA
*
104187 CCTAAATCC-TAAATTC-TAAACCCTAAAC
1 CCTAAACCCTTAAATTCTTAAACCCTAAAC
*
104215 CCTAAA-CCTTAAA-TCTTAAAACCTAAAC
1 CCTAAACCCTTAAATTCTTAAACCCTAAAC
*
104243 ACTAAA-CCTTAATCCATAATCTATAAACCCTAAAC
1 CCTAAACCCTTAA---AT--TCT-TAAACCCTAAAC
104278 CCTAAACCCTTAA
1 CCTAAACCCTTAA
104291 TCCAATTATA
Statistics
Matches: 62, Mismatches: 4, Indels: 12
0.79 0.05 0.15
Matches are distributed among these distances:
27 4 0.06
28 32 0.52
31 1 0.02
34 3 0.05
35 16 0.26
36 6 0.10
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (30 bp):
CCTAAACCCTTAAATTCTTAAACCCTAAAC
Found at i:104285 original size:14 final size:14
Alignment explanation
Indices: 104187--104287 Score: 76
Period size: 14 Copynumber: 7.2 Consensus size: 14
104177 TATACCTTAA
* *
104187 CCTAAATCCTAAAT
1 CCTAAACCCTAAAC
*
104201 TCTAAACCCTAAAC
1 CCTAAACCCTAAAC
* *
104215 CCTAAACCTTAAAT
1 CCTAAACCCTAAAC
* *
104229 CTTAAAACCTAAAC
1 CCTAAACCCTAAAC
* * *
104243 ACTAAACCTTAATC
1 CCTAAACCCTAAAC
* * **
104257 CATAATCTATAAAC
1 CCTAAACCCTAAAC
104271 CCTAAACCCTAAAC
1 CCTAAACCCTAAAC
104285 CCT
1 CCT
104288 TAATCCAATT
Statistics
Matches: 62, Mismatches: 25, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
14 62 1.00
ACGTcount: A:0.44, C:0.32, G:0.00, T:0.25
Consensus pattern (14 bp):
CCTAAACCCTAAAC
Found at i:104303 original size:35 final size:35
Alignment explanation
Indices: 104231--104303 Score: 94
Period size: 35 Copynumber: 2.1 Consensus size: 35
104221 CCTTAAATCT
*
104231 TAAAACCTAAACACTAAACCTTAATCCATAATCTA
1 TAAAACCTAAACACTAAACCTTAATCCATAATATA
* * *
104266 TAAACCCTAAACCCTAAACCCTTAATCCA-ATTATA
1 TAAAACCTAAACACTAAA-CCTTAATCCATAATATA
104301 TAA
1 TAA
104304 TAAGAGTTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
35 23 0.70
36 10 0.30
ACGTcount: A:0.47, C:0.27, G:0.00, T:0.26
Consensus pattern (35 bp):
TAAAACCTAAACACTAAACCTTAATCCATAATATA
Found at i:112156 original size:69 final size:69
Alignment explanation
Indices: 112027--112164 Score: 168
Period size: 69 Copynumber: 2.0 Consensus size: 69
112017 ATGTCCCTCG
* ** * *** **
112027 CCAGGGCTCGGACCCGAGTTCTTAATGCCACCCAGGGTTTGACTATCTGTGAACTTGTGTCCCTC
1 CCAGGGCTCGGACCAGAGTTCTTAATGCCACCCAGGGTCCGACCATCAACGAACCCGTGTCCCTC
112092 ACCA
66 ACCA
* * *
112096 CCAGGGCTTGGACCAGAGTTCTTAATGCCTCCGAGGGTCCGACCATCAACGAACCCGTGTCCCTC
1 CCAGGGCTCGGACCAGAGTTCTTAATGCCACCCAGGGTCCGACCATCAACGAACCCGTGTCCCTC
112161 ACCA
66 ACCA
112165 GGACCGCTAG
Statistics
Matches: 57, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
69 57 1.00
ACGTcount: A:0.20, C:0.34, G:0.23, T:0.22
Consensus pattern (69 bp):
CCAGGGCTCGGACCAGAGTTCTTAATGCCACCCAGGGTCCGACCATCAACGAACCCGTGTCCCTC
ACCA
Found at i:126009 original size:12 final size:11
Alignment explanation
Indices: 125992--126027 Score: 54
Period size: 12 Copynumber: 3.1 Consensus size: 11
125982 AATTCCGTTA
125992 TATTTTTATTTT
1 TATTTTT-TTTT
126004 TATTTTTTCTTT
1 TATTTTTT-TTT
126016 TATTTTTTTTT
1 TATTTTTTTTT
126027 T
1 T
126028 CCGATTAAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 5 0.22
12 18 0.78
ACGTcount: A:0.11, C:0.03, G:0.00, T:0.86
Consensus pattern (11 bp):
TATTTTTTTTT
Found at i:134057 original size:23 final size:23
Alignment explanation
Indices: 134044--134105 Score: 115
Period size: 23 Copynumber: 2.7 Consensus size: 23
134034 ATTTTAAATT
*
134044 TTTAAATTTTTATAAATTTAATC
1 TTTAAAATTTTATAAATTTAATC
134067 TTTAAAATTTTATAAATTTAATC
1 TTTAAAATTTTATAAATTTAATC
134090 TTTAAAATTTTATAAA
1 TTTAAAATTTTATAAA
134106 CTCGTTCTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (23 bp):
TTTAAAATTTTATAAATTTAATC
Found at i:146640 original size:13 final size:13
Alignment explanation
Indices: 146624--146648 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
146614 TATAATTTTA
146624 AAATTTTTATTTC
1 AAATTTTTATTTC
146637 AAATTTTTATTT
1 AAATTTTTATTT
146649 TTAAAAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (13 bp):
AAATTTTTATTTC
Found at i:147435 original size:26 final size:26
Alignment explanation
Indices: 147404--147455 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
147394 ATTTCACTAT
*
147404 AACATTCTAAAATTTTAATTTCTTAA
1 AACATTCTAAAATTGTAATTTCTTAA
147430 AACATTCTAAAATTGTAATTTCTTAA
1 AACATTCTAAAATTGTAATTTCTTAA
147456 GTTATTTCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.42, C:0.12, G:0.02, T:0.44
Consensus pattern (26 bp):
AACATTCTAAAATTGTAATTTCTTAA
Found at i:147559 original size:8 final size:9
Alignment explanation
Indices: 147535--147560 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
147525 TTTATTATAT
147535 ATATTTTTA
1 ATATTTTTA
147544 ATATTTTTA
1 ATATTTTTA
147553 ATATTTTT
1 ATATTTTT
147561 GATTATGCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (9 bp):
ATATTTTTA
Found at i:147681 original size:20 final size:20
Alignment explanation
Indices: 147644--147681 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
147634 CTTGATTTTT
*
147644 AAAATAATATAATTTAAAAA
1 AAAATAATATAATATAAAAA
147664 AAAATAA-ATAAATATAAA
1 AAAATAATAT-AATATAAA
147682 CCGAATACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 2 0.12
20 14 0.88
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (20 bp):
AAAATAATATAATATAAAAA
Found at i:153857 original size:27 final size:26
Alignment explanation
Indices: 153821--153883 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 26
153811 AATCCGAAGA
153821 AAGCGAAAGCAGGGAAAGAGTTTTTG
1 AAGCGAAAGCAGGGAAAGAGTTTTTG
153847 AAGCAGAAAGCAGGGAAAGAGTTTTTG
1 AAGC-GAAAGCAGGGAAAGAGTTTTTG
*
153874 GAGCCGAAAG
1 AAG-CGAAAG
153884 TGACAAGGTC
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
26 4 0.12
27 29 0.85
28 1 0.03
ACGTcount: A:0.40, C:0.10, G:0.35, T:0.16
Consensus pattern (26 bp):
AAGCGAAAGCAGGGAAAGAGTTTTTG
Found at i:155634 original size:2 final size:2
Alignment explanation
Indices: 155627--155653 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
155617 ATGACGAGAT
155627 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
155654 TTGATAATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:155982 original size:16 final size:16
Alignment explanation
Indices: 155963--155996 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
155953 TAAGATGATA
155963 TAATTAATAAAAAAAT
1 TAATTAATAAAAAAAT
155979 TAATTAATAAAAAAAT
1 TAATTAATAAAAAAAT
155995 TA
1 TA
155997 GATTTTAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
TAATTAATAAAAAAAT
Found at i:161370 original size:8 final size:8
Alignment explanation
Indices: 161357--161397 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
161347 CTCATTTTCA
161357 GAGAATTT
1 GAGAATTT
161365 GAGAATTT
1 GAGAATTT
*
161373 -AGAGTTT
1 GAGAATTT
*
161380 GGGAATTT
1 GAGAATTT
161388 GAGAATTT
1 GAGAATTT
161396 GA
1 GA
161398 AAGCTTGTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.34, C:0.00, G:0.29, T:0.37
Consensus pattern (8 bp):
GAGAATTT
Found at i:162141 original size:34 final size:34
Alignment explanation
Indices: 162103--162203 Score: 139
Period size: 34 Copynumber: 3.0 Consensus size: 34
162093 AAATTTAATG
* *
162103 TTAAATTTTGAATACTATAATTTATATTTTAAAT
1 TTAAATTTCGAATAATATAATTTATATTTTAAAT
* * * *
162137 TTAAATTTCGAATAATATTATTTTTATTTTTATT
1 TTAAATTTCGAATAATATAATTTATATTTTAAAT
*
162171 TTAAATTTCGAATAATATAATTTGTATTTTAAA
1 TTAAATTTCGAATAATATAATTTATATTTTAAA
162204 AACATTTATC
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 57 1.00
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.54
Consensus pattern (34 bp):
TTAAATTTCGAATAATATAATTTATATTTTAAAT
Found at i:162806 original size:21 final size:21
Alignment explanation
Indices: 162780--162827 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
162770 TCTGCGGAGA
* *
162780 TGGCATATGAACTGGTGGGCT
1 TGGCATATGAAATGGAGGGCT
162801 TGGCATATGAAATGGAGGGCT
1 TGGCATATGAAATGGAGGGCT
*
162822 GGGCAT
1 TGGCAT
162828 GTACCCATGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.23, C:0.12, G:0.40, T:0.25
Consensus pattern (21 bp):
TGGCATATGAAATGGAGGGCT
Found at i:164596 original size:35 final size:32
Alignment explanation
Indices: 164557--164641 Score: 89
Period size: 32 Copynumber: 2.6 Consensus size: 32
164547 AATTCTAAAT
164557 AAATAATAATTATATAAATATTATTTTAATAAAAA
1 AAATAATAATTATATAAATA-TA--TTAATAAAAA
* * *
164592 AAATAATATTTACATAAATATATTAATATAAA
1 AAATAATAATTATATAAATATATTAATAAAAA
* * *
164624 ATATAATAACTATTTAAA
1 AAATAATAATTATATAAA
164642 AAAATACTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
32 22 0.52
34 2 0.05
35 18 0.43
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (32 bp):
AAATAATAATTATATAAATATATTAATAAAAA
Found at i:164618 original size:32 final size:34
Alignment explanation
Indices: 164557--164632 Score: 93
Period size: 35 Copynumber: 2.3 Consensus size: 34
164547 AATTCTAAAT
*
164557 AAATAATAATTATATAAATATTATTTTAATAAAAA
1 AAATAATAATTACATAAATATTA-TTTAATAAAAA
* *
164592 AAATAATATTTACATAAATA-TA-TTAATATAAA
1 AAATAATAATTACATAAATATTATTTAATAAAAA
*
164624 ATATAATAA
1 AAATAATAA
164633 CTATTTAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
32 16 0.44
34 2 0.06
35 18 0.50
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (34 bp):
AAATAATAATTACATAAATATTATTTAATAAAAA
Found at i:164657 original size:34 final size:34
Alignment explanation
Indices: 164585--164662 Score: 88
Period size: 34 Copynumber: 2.3 Consensus size: 34
164575 TATTATTTTA
* * * *
164585 ATAAAAAAAATAATATTTACATAAATATATTAAT
1 ATAAAAATAATAATATTTACATAAAAATACTAAC
164619 ATAAAATATAATAACTATTTA-A-AAAAATACTAAC
1 ATAAAA-ATAATAA-TATTTACATAAAAATACTAAC
164653 ATAAAAATAA
1 ATAAAAATAA
164663 ATTTCTTACC
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
33 4 0.11
34 21 0.55
35 7 0.18
36 6 0.16
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (34 bp):
ATAAAAATAATAATATTTACATAAAAATACTAAC
Found at i:167734 original size:17 final size:17
Alignment explanation
Indices: 167714--167747 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
167704 AATTTTATAT
*
167714 AAATTATTTTAAATTAA
1 AAATTATATTAAATTAA
167731 AAATTATATTAAATTAA
1 AAATTATATTAAATTAA
167748 CAATAAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AAATTATATTAAATTAA
Found at i:168182 original size:21 final size:20
Alignment explanation
Indices: 168096--168253 Score: 77
Period size: 21 Copynumber: 7.8 Consensus size: 20
168086 AAATGACCAA
**
168096 CAAAATCGCAACGCGA-AAT
1 CAAAATCGCAACGCGATTTT
* ***
168115 AAAAATCGCAACGCGATCCC
1 CAAAATCGCAACGCGATTTT
* ** *
168135 CAGAATCGCAAATC-AGTTTC
1 CAAAATCGCAACGCGA-TTTT
168155 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * * *
168176 GAAAATCGCGATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
168197 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* *
168217 CAATAATCGCAACGCGAATAT
1 CAA-AATCGCAACGCGATTTT
*
168238 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
168254 ACACATAAAT
Statistics
Matches: 102, Mismatches: 31, Indels: 11
0.71 0.22 0.08
Matches are distributed among these distances:
19 16 0.16
20 42 0.41
21 44 0.43
ACGTcount: A:0.38, C:0.25, G:0.18, T:0.20
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:168246 original size:20 final size:20
Alignment explanation
Indices: 168221--168414 Score: 76
Period size: 20 Copynumber: 9.7 Consensus size: 20
168211 GATTTTCAAT
* *
168221 AATCGCAACGCGAATATGA-A
1 AATCGCAACGCGAACA-CATA
168241 AATCGCAACGCGAACACATA
1 AATCGCAACGCGAACACATA
* *
168261 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
168281 AATCGCAACGTGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* ****
168301 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGAACACATA
* * *
168321 AATCGCAATGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
168341 TATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
** *
168361 AATCGCAACGATAATACATAA
1 AATCGCAACGCGAACACAT-A
* *
168382 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
168402 AATCGCAACGCGA
1 AATCGCAACGCGA
168415 TATTTAAAGC
Statistics
Matches: 139, Mismatches: 28, Indels: 15
0.76 0.15 0.08
Matches are distributed among these distances:
19 3 0.02
20 120 0.86
21 15 0.11
22 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.19
Consensus pattern (20 bp):
AATCGCAACGCGAACACATA
Found at i:168266 original size:40 final size:39
Alignment explanation
Indices: 168221--168414 Score: 199
Period size: 40 Copynumber: 4.8 Consensus size: 39
168211 GATTTTCAAT
* ** *
168221 AATCGCAACGCGAATATGAAAATCGCAACGCGAACACATA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAAC-CATA
* * *
168261 AATCGCAACGCGTATCCGTAAATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCG-AACCATA
** * * *
168301 AATCGCAACGCGTATGGGTAAATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCG-AACCATA
* ** *
168341 TATCGCAACGCGTATCCGTAAATCGCAACGATAATACATAA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAA-CCAT-A
168382 AATCGCAACGCGTATCCGTAAATCGCAACGCGA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGA
168415 TATTTAAAGC
Statistics
Matches: 128, Mismatches: 23, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 94 0.73
41 33 0.26
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.19
Consensus pattern (39 bp):
AATCGCAACGCGTATCCGTAAATCGCAACGCGAACCATA
Found at i:168304 original size:60 final size:60
Alignment explanation
Indices: 168221--168413 Score: 251
Period size: 60 Copynumber: 3.2 Consensus size: 60
168211 GATTTTCAAT
* ** * *
168221 AATCGCAACGCGAATATGAAAATCGCAACGCGAACACATAAATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTA
* * *** *
168281 AATCGCAACGTGTATCCGTAAATCGCAACGCGTATGGGTAAATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTA
* **
168341 TATCGCAACGCGTATCCGTAAATCGCAACGATAATACATAAAATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACAT-AAATCGCAACGCGTATCCGTA
168402 AATCGCAACGCG
1 AATCGCAACGCG
168414 ATATTTAAAG
Statistics
Matches: 111, Mismatches: 21, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
60 80 0.72
61 31 0.28
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.19
Consensus pattern (60 bp):
AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTA
Found at i:168834 original size:33 final size:33
Alignment explanation
Indices: 168795--168865 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
168785 TTCACTTAGA
*
168795 TTTCATTTCGCGTTACGATTCTGTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
* *
168828 TTTCATTTCGCGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
168861 TTTCA
1 TTTCA
168866 AGTTAGTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.11, C:0.23, G:0.18, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
Found at i:169005 original size:14 final size:14
Alignment explanation
Indices: 168986--169040 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
168976 AGAATGACTG
168986 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
*
169000 TCGCAACGCGAAATGAAAA
1 TCGCAA--CG--A-GAGAA
169019 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
169033 TCGCAACG
1 TCGCAACG
169041 CGAAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.29
ACGTcount: A:0.42, C:0.24, G:0.25, T:0.09
Consensus pattern (14 bp):
TCGCAACGAGAGAA
Found at i:169023 original size:33 final size:33
Alignment explanation
Indices: 168986--169056 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
168976 AGAATGACTG
**
168986 TCGCAACGAGAGAATCGCAACGCGAAATGAAAA
1 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
169019 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
1 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
169052 TCGCA
1 TCGCA
169057 TTGCGATTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.44, C:0.25, G:0.23, T:0.08
Consensus pattern (33 bp):
TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
Found at i:169074 original size:19 final size:19
Alignment explanation
Indices: 169052--169149 Score: 81
Period size: 19 Copynumber: 5.7 Consensus size: 19
169042 GAAACCAAAA
*
169052 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
169071 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
169085 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
169104 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* * *
169118 TCTCGTTGCGATTGTCATC
1 TCGCGTTGCGATTTTCATT
169137 TCGCGTTGCGATT
1 TCGCGTTGCGATT
169150 CTCTCGTTGC
Statistics
Matches: 63, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
14 20 0.32
16 5 0.08
17 6 0.10
19 32 0.51
ACGTcount: A:0.10, C:0.24, G:0.22, T:0.43
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:169093 original size:14 final size:14
Alignment explanation
Indices: 169074--169163 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
169064 TTTCATTTCG
169074 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
169088 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
169107 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
169121 CGTTGCGATTGTCATCT
1 CGTTGCGA-T-TC-TCT
169138 CGCGTTGCGATTCTCT
1 --CGTTGCGATTCTCT
169154 CGTTGCGATT
1 CGTTGCGATT
169164 TTCATTTCAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.09, C:0.26, G:0.23, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:169099 original size:33 final size:33
Alignment explanation
Indices: 169057--169171 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
169047 CAAAATCGCA
169057 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
169090 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
* *
169123 TTGCGATTGTCATCTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
169156 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
169172 AACCAAAAGA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.10, C:0.24, G:0.21, T:0.45
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:171048 original size:92 final size:93
Alignment explanation
Indices: 170870--171247 Score: 726
Period size: 92 Copynumber: 4.1 Consensus size: 93
170860 TAGATTGCTT
*
170870 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
170935 TTTGTCTTTGTTTTGTC-TTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
170962 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATA-TA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
171026 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
171054 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATA-TA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
171118 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
171146 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
171211 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
171239 AGTAAATTT
1 AGTAAATTT
171248 ATCCATTCAA
Statistics
Matches: 283, Mismatches: 1, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
91 19 0.07
92 225 0.80
93 39 0.14
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.46
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:171331 original size:19 final size:19
Alignment explanation
Indices: 171291--171419 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
171281 TAGTTTACTT
* *
171291 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC-CAAAA
171311 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
**
171330 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAACCAAAA
*
171349 TCGCAA--CG--A-CAGAA
1 TCGCAACGCGAAACCAAAA
171363 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
*
171382 TCGCAA--CG--A-CAAGA
1 TCGCAACGCGAAACCAAAA
171396 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
171415 TCGCA
1 TCGCA
171420 TTGCGATTTT
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 19 0.21
15 2 0.02
16 4 0.04
17 4 0.04
18 2 0.02
19 46 0.51
20 13 0.14
ACGTcount: A:0.46, C:0.29, G:0.17, T:0.09
Consensus pattern (19 bp):
TCGCAACGCGAAACCAAAA
Found at i:171370 original size:33 final size:32
Alignment explanation
Indices: 171327--171419 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 32
171317 CGCGAAACCA
**
171327 AAATCGCAACGCGAAATGAAAATCGCAACGAC
1 AAATCGCAACGCGAAACCAAAATCGCAACGAC
171359 AGAATCGCAACGCGAAACCAAAATCGCAACGAC
1 A-AATCGCAACGCGAAACCAAAATCGCAACGAC
171392 AAGATCGCAACGCGAAACCAAAATCGCA
1 AA-ATCGCAACGCGAAACCAAAATCGCA
171420 TTGCGATTTT
Statistics
Matches: 57, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
32 2 0.04
33 55 0.96
ACGTcount: A:0.46, C:0.28, G:0.18, T:0.08
Consensus pattern (32 bp):
AAATCGCAACGCGAAACCAAAATCGCAACGAC
Found at i:171417 original size:52 final size:52
Alignment explanation
Indices: 171291--171419 Score: 140
Period size: 52 Copynumber: 2.5 Consensus size: 52
171281 TAGTTTACTT
**
171291 TCGCAACACGAAACTTAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
1 TCGCAACACGAAACACAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
* * *
171343 T-G-AAAATCGCAACGACAGAATCGCAACGCGAAACCAAAATCGCAACGAC-AAGA
1 TCGCAACA-CGAAAC-ACAAAATCGCAACGCGAAACCAAAATCGCAACG-CGAA-A
*
171396 TCGCAACGCGAAAC-CAAAATCGCA
1 TCGCAACACGAAACACAAAATCGCA
171420 TTGCGATTTT
Statistics
Matches: 62, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
50 3 0.05
51 6 0.10
52 42 0.68
53 3 0.05
54 6 0.10
55 2 0.03
ACGTcount: A:0.46, C:0.29, G:0.17, T:0.09
Consensus pattern (52 bp):
TCGCAACACGAAACACAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
Found at i:171437 original size:19 final size:19
Alignment explanation
Indices: 171415--171549 Score: 128
Period size: 19 Copynumber: 7.6 Consensus size: 19
171405 GAAACCAAAA
*
171415 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
171434 TCGCGTTGCGA--TTC-TT
1 TCGCGTTGCGATTTTCATT
171450 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* *
171467 TCGCATTGCGA--TT-ATG
1 TCGCGTTGCGATTTTCATT
171483 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
171500 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
*
171519 TCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTCA-TT
*
171539 TCGTGTTGCGA
1 TCGCGTTGCGA
171550 AAGTAAACTA
Statistics
Matches: 95, Mismatches: 10, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 15 0.16
16 11 0.12
17 11 0.12
19 46 0.48
20 12 0.13
ACGTcount: A:0.12, C:0.19, G:0.24, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:171456 original size:14 final size:14
Alignment explanation
Indices: 171437--171493 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
171427 TTTCATTTCG
171437 CGTTGCGATTCTTT
1 CGTTGCGATTCTTT
171451 CGTTGCGATTTTCATTT
1 CGTTGCGA--TTC-TTT
* *
171468 CGCATTGCGATTATGT
1 CG--TTGCGATTCTTT
171484 CGTTGCGATT
1 CGTTGCGATT
171494 TTCATTTCGC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 16 0.44
16 7 0.19
17 7 0.19
19 6 0.17
ACGTcount: A:0.12, C:0.19, G:0.23, T:0.46
Consensus pattern (14 bp):
CGTTGCGATTCTTT
Found at i:171462 original size:33 final size:33
Alignment explanation
Indices: 171420--171512 Score: 159
Period size: 33 Copynumber: 2.8 Consensus size: 33
171410 CAAAATCGCA
* *
171420 TTGCGATTTTCATTTCGCGTTGCGATTCTTTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTATGTCG
*
171453 TTGCGATTTTCATTTCGCATTGCGATTATGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTATGTCG
171486 TTGCGATTTTCATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCGTTGCGATT
171513 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 56 1.00
ACGTcount: A:0.12, C:0.19, G:0.22, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTATGTCG
Found at i:173462 original size:14 final size:14
Alignment explanation
Indices: 173443--173478 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
173433 ATTGTTTAAT
173443 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
173457 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
173471 TGATTTGT
1 TGATTTGT
173479 GTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:173601 original size:19 final size:19
Alignment explanation
Indices: 173585--173662 Score: 112
Period size: 19 Copynumber: 4.4 Consensus size: 19
173575 AAAAATGACT
173585 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
173604 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
173618 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
173637 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
173656 ATCGCAA
1 ATCGCAA
173663 CGAGATAATC
Statistics
Matches: 52, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
14 10 0.19
15 1 0.02
16 2 0.04
17 2 0.04
18 1 0.02
19 36 0.69
ACGTcount: A:0.46, C:0.18, G:0.22, T:0.14
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:173700 original size:52 final size:52
Alignment explanation
Indices: 173585--173684 Score: 191
Period size: 52 Copynumber: 1.9 Consensus size: 52
173575 AAAAATGACT
173585 ATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAA
*
173637 ATCGCAATGCGAAATGAAAATCGCAACGAGATAATCGCAATGCGAAAT
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAAT
173685 TATAAACGCA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.45, C:0.18, G:0.22, T:0.15
Consensus pattern (52 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAA
Found at i:173716 original size:20 final size:19
Alignment explanation
Indices: 173691--173808 Score: 121
Period size: 20 Copynumber: 6.6 Consensus size: 19
173681 AAATTATAAA
173691 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
173710 CCGCATTGCGATTTTCATTT
1 -CGCATTGCGATTTTCATTT
*
173730 CGCATTGCGA--TTC-TCT
1 CGCATTGCGATTTTCATTT
173746 CG--TTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
173763 CCGCATTGCGATTTTCA--T
1 -CGCATTGCGATTTTCATTT
*
173781 -G--TTGGGATTTTCATTT
1 CGCATTGCGATTTTCATTT
*
173797 CGCGTTGCGATT
1 CGCATTGCGATT
173809 GTATTTTCCG
Statistics
Matches: 83, Mismatches: 4, Indels: 23
0.75 0.04 0.21
Matches are distributed among these distances:
14 17 0.20
16 9 0.11
17 6 0.07
18 3 0.04
19 17 0.20
20 31 0.37
ACGTcount: A:0.14, C:0.22, G:0.19, T:0.45
Consensus pattern (19 bp):
CGCATTGCGATTTTCATTT
Found at i:173773 original size:34 final size:33
Alignment explanation
Indices: 173715--173808 Score: 136
Period size: 34 Copynumber: 2.8 Consensus size: 33
173705 CATTTCCGCA
173715 TTGCGATTTTCATTTCGCATTGCGATTCTC-TCG
1 TTGCGATTTTCATTTCGCATTGCGATTCTCAT-G
*
173748 TTGCGATTTTCATTTCCGCATTGCGATTTTCATG
1 TTGCGATTTTCATTT-CGCATTGCGATTCTCATG
* *
173782 TTGGGATTTTCATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCATTGCGATT
173809 GTATTTTCCG
Statistics
Matches: 56, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
33 26 0.46
34 29 0.52
35 1 0.02
ACGTcount: A:0.13, C:0.20, G:0.20, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTCTCATG
Found at i:173818 original size:53 final size:53
Alignment explanation
Indices: 173695--173814 Score: 147
Period size: 53 Copynumber: 2.3 Consensus size: 53
173685 TATAAACGCA
* *
173695 TTGCGATTTTCATTTCCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATTGTCATTTCCGCATTGCGATTTTCATTTCGCATTGCGATTCTCGCG
* * * *
173748 TTGCGATTTTCATTTCCGCATTGCGATTTTCATGTTGGGATTTTC-ATT-TCGCG
1 TTGCGATTGTCATTTCCGCATTGCGATTTTCAT-TTCGCA-TTGCGATTCTCGCG
173801 TTGCGATTGT-ATTT
1 TTGCGATTGTCATTT
173815 TCCGTGTTGC
Statistics
Matches: 60, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
52 4 0.07
53 46 0.77
54 7 0.12
55 3 0.05
ACGTcount: A:0.13, C:0.20, G:0.19, T:0.47
Consensus pattern (53 bp):
TTGCGATTGTCATTTCCGCATTGCGATTTTCATTTCGCATTGCGATTCTCGCG
Found at i:176106 original size:12 final size:12
Alignment explanation
Indices: 176089--176113 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
176079 TTCTTCGGGA
176089 CTTTTTCTTCTT
1 CTTTTTCTTCTT
176101 CTTTTTCTTCTT
1 CTTTTTCTTCTT
176113 C
1 C
176114 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:176322 original size:24 final size:24
Alignment explanation
Indices: 176288--176334 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
176278 CTGAAACATC
176288 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
176312 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
176335 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:177039 original size:20 final size:20
Alignment explanation
Indices: 177011--177400 Score: 457
Period size: 20 Copynumber: 19.4 Consensus size: 20
177001 AAATTTCAGT
* * * *
177011 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATACGC
*
177031 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
* * *
177051 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATACGC
*
177071 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
177091 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
177111 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
177131 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
177151 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
177171 ATTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
177191 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATACGC
177211 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
* * *
177231 GTTGCGATTTTATGTATTA-TC
1 GTTGCGA-TTTACGGA-TACGC
177252 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
177272 GTTGCGATATACGGATACGC
1 GTTGCGATTTACGGATACGC
* **
177292 ATTGCGATTTACCCATACGC
1 GTTGCGATTTACGGATACGC
*
177312 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATACGC
177332 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
* *
177352 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATACGC
* ** *
177372 GTTGCGATTTTCATATTCGC
1 GTTGCGATTTACGGATACGC
177392 GTTGCGATT
1 GTTGCGATT
177401 ATTGAAAATC
Statistics
Matches: 323, Mismatches: 36, Indels: 22
0.85 0.09 0.06
Matches are distributed among these distances:
19 7 0.02
20 295 0.91
21 19 0.06
22 2 0.01
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.36
Consensus pattern (20 bp):
GTTGCGATTTACGGATACGC
Found at i:178613 original size:192 final size:192
Alignment explanation
Indices: 178286--178669 Score: 759
Period size: 192 Copynumber: 2.0 Consensus size: 192
178276 TAACCCAAAT
178286 ATATGAGCCTCAAGATCTCAAAGAAATTACTGGATTTCAAGCGTTCTCTACGAACTCTGGGTCGG
1 ATATGAGCCTCAAGATCTCAAAGAAATTACTGGATTTCAAGCGTTCTCTACGAACTCTGGGTCGG
178351 AGGTTGATGACTCGTCGTCAATGGGTGGAACTCAATTGGCTCGCCGTCAGTTACCCGGTCACTCG
66 AGGTTGATGACTCGTCGTCAATGGGTGGAACTCAATTGGCTCGCCGTCAGTTACCCGGTCACTCG
178416 ATTGAGTCACGCGGGAACAATAGTAAAAACAACACTTGCAAGGCCATTGTTACGGTTGACTC
131 ATTGAGTCACGCGGGAACAATAGTAAAAACAACACTTGCAAGGCCATTGTTACGGTTGACTC
178478 ATATGAGCCTCAAGATCTCAAAGAAATTACTGGATTTCAAGCGTTCTCTACGAACTCTGGGTCGG
1 ATATGAGCCTCAAGATCTCAAAGAAATTACTGGATTTCAAGCGTTCTCTACGAACTCTGGGTCGG
178543 AGGTTGATGACTCGTCGTCAATGGGTGGAACTCAATTGGCTCGCCGTCAGTTACCCGGTCACTCG
66 AGGTTGATGACTCGTCGTCAATGGGTGGAACTCAATTGGCTCGCCGTCAGTTACCCGGTCACTCG
*
178608 ATTGAGTCACGCGGGAACAATAGTAAAAACAACACTTGCAAGGCCATTGTTTCGGTTGACTC
131 ATTGAGTCACGCGGGAACAATAGTAAAAACAACACTTGCAAGGCCATTGTTACGGTTGACTC
178670 GGATAGTTCA
Statistics
Matches: 191, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
192 191 1.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (192 bp):
ATATGAGCCTCAAGATCTCAAAGAAATTACTGGATTTCAAGCGTTCTCTACGAACTCTGGGTCGG
AGGTTGATGACTCGTCGTCAATGGGTGGAACTCAATTGGCTCGCCGTCAGTTACCCGGTCACTCG
ATTGAGTCACGCGGGAACAATAGTAAAAACAACACTTGCAAGGCCATTGTTACGGTTGACTC
Found at i:180061 original size:26 final size:26
Alignment explanation
Indices: 180029--180081 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
180019 AGTTCTTTAT
* *
180029 TATATATATATTTATATGTGTGTATG
1 TATATATATATGTATATGTGTGAATG
* *
180055 TATATATGTATGTATCTGTGTGAATG
1 TATATATATATGTATATGTGTGAATG
180081 T
1 T
180082 GTGTGTGTGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.02, G:0.19, T:0.51
Consensus pattern (26 bp):
TATATATATATGTATATGTGTGAATG
Found at i:197174 original size:161 final size:161
Alignment explanation
Indices: 196983--197305 Score: 628
Period size: 161 Copynumber: 2.0 Consensus size: 161
196973 AGGCACACTT
*
196983 TTCTCTAAGGCGGTAGGCATAAACCTCCCCCCCCCCGGATTAAATTTATTTTTAGTTTCTTTCAT
1 TTCTCTAAGGCGGTAGGCATAAACCTCCCCCACCCCGGATTAAATTTATTTTTAGTTTCTTTCAT
*
197048 TGTTCACCTTTTTTCTTTCATTTTCTATGCTTTACTCAGGCTAGAGCTTTTTTGTGTCGAGCGCC
66 TGTTCACCTTTTTTCTTTCATTTTCTATGCTTTACTCAGGCTAGAGCTTTTTTGTGCCGAGCGCC
197113 TGAGGCAATGTACGGGTTGAAGCACCTAGAG
131 TGAGGCAATGTACGGGTTGAAGCACCTAGAG
197144 TTCTCTAAGGCGGTAGGCATAAACCTCCCCCACCCCGGATTAAATTTATTTTTAGTTTCTTTCAT
1 TTCTCTAAGGCGGTAGGCATAAACCTCCCCCACCCCGGATTAAATTTATTTTTAGTTTCTTTCAT
197209 TGTTCACCTTTTTTCTTTCATTTTCTATGCTTTACTCAGGCTAGAGCTTTTTTGTGCCGAGCGCC
66 TGTTCACCTTTTTTCTTTCATTTTCTATGCTTTACTCAGGCTAGAGCTTTTTTGTGCCGAGCGCC
197274 TGAGGCAATGTACGGGTTGAAGCACCTAGAG
131 TGAGGCAATGTACGGGTTGAAGCACCTAGAG
197305 T
1 T
197306 ACGCCTTGCA
Statistics
Matches: 160, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
161 160 1.00
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.38
Consensus pattern (161 bp):
TTCTCTAAGGCGGTAGGCATAAACCTCCCCCACCCCGGATTAAATTTATTTTTAGTTTCTTTCAT
TGTTCACCTTTTTTCTTTCATTTTCTATGCTTTACTCAGGCTAGAGCTTTTTTGTGCCGAGCGCC
TGAGGCAATGTACGGGTTGAAGCACCTAGAG
Found at i:202417 original size:26 final size:26
Alignment explanation
Indices: 202388--202437 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
202378 TGCTTAAGTT
202388 TATGATAATTAATTTGTAGAGATTGC
1 TATGATAATTAATTTGTAGAGATTGC
*
202414 TATGATAATTACTTTGTAGAGATT
1 TATGATAATTAATTTGTAGAGATT
202438 ACTTATATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.04, G:0.18, T:0.44
Consensus pattern (26 bp):
TATGATAATTAATTTGTAGAGATTGC
Found at i:202447 original size:26 final size:27
Alignment explanation
Indices: 202387--202447 Score: 90
Period size: 26 Copynumber: 2.3 Consensus size: 27
202377 TTGCTTAAGT
*
202387 TTATGATAATTAATTTGTAGAGATTGC
1 TTATGATAATTAATTTGTAGAGATTAC
*
202414 -TATGATAATTACTTTGTAGAGATTAC
1 TTATGATAATTAATTTGTAGAGATTAC
202440 TTAT-ATAA
1 TTATGATAA
202448 AAATTGCTGC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
26 28 0.90
27 3 0.10
ACGTcount: A:0.36, C:0.05, G:0.15, T:0.44
Consensus pattern (27 bp):
TTATGATAATTAATTTGTAGAGATTAC
Found at i:205474 original size:148 final size:148
Alignment explanation
Indices: 205276--205609 Score: 456
Period size: 150 Copynumber: 2.2 Consensus size: 148
205266 TGTATTATGG
* * *
205276 ATGTGAATGTTTTAAGTGATTTTGGAACTTGAACAGACCCAAAATCGAACTTCGTATGCTC-TAA
1 ATGTGAATGTTTTATGTGATTTTGGAACTTGAACAAACCCAAAAACGAACTTCGTATGCTCATAA
* * * * *
205340 TTTATTGCTCGGTATCAAAACACTCGAGGTTCATGACTCGATTTCCATAAATTTGGTTTTAGTTA
66 TATACTGCTCAGTATCAAAACACTCGAGGTTCATGACTCAATTTCCATAAATTTGGTTTTAGTGA
205405 TAAAGATGTGTATCATAA
131 TAAAGATGTGTATCATAA
*
205423 ATGTGAAAATG-TTTATGTGATTTTGGAACTTGAACAAACCCAAAAACGAACTTGGTATGCTCTA
1 ATGTG--AATGTTTTATGTGATTTTGGAACTTGAACAAACCCAAAAACGAACTTCGTATGCTC-A
* * * * ** *
205487 TAATATACTGTTCATTATCGAAACACTTGAGGTTCATGGTTCAATTTCGATAAATTTGGTTTTAG
63 TAATATACTGCTCAGTATCAAAACACTCGAGGTTCATGACTCAATTTCCATAAATTTGGTTTTAG
* * *
205552 TGATAAATATGTGTGTCATGA
128 TGATAAAGATGTGTATCATAA
205573 ATGTGAATGTTTTATGTGATTTTGGAACTTGAACAAA
1 ATGTGAATGTTTTATGTGATTTTGGAACTTGAACAAA
205610 TCCGTAAACA
Statistics
Matches: 163, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
147 5 0.03
148 51 0.31
149 31 0.19
150 76 0.47
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.37
Consensus pattern (148 bp):
ATGTGAATGTTTTATGTGATTTTGGAACTTGAACAAACCCAAAAACGAACTTCGTATGCTCATAA
TATACTGCTCAGTATCAAAACACTCGAGGTTCATGACTCAATTTCCATAAATTTGGTTTTAGTGA
TAAAGATGTGTATCATAA
Found at i:209401 original size:2 final size:2
Alignment explanation
Indices: 209394--209419 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
209384 AGAATAAGGA
209394 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
209420 GAGGGGGGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:209783 original size:21 final size:21
Alignment explanation
Indices: 209759--209807 Score: 66
Period size: 19 Copynumber: 2.4 Consensus size: 21
209749 GTGTTTATAT
209759 ATTAAATTTTACTTTTAAAAA
1 ATTAAATTTTACTTTTAAAAA
*
209780 ATTAAA--TTATTTTTAAAAA
1 ATTAAATTTTACTTTTAAAAA
*
209799 ATCAAATTT
1 ATTAAATTT
209808 ATCTAAAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 17 0.71
21 7 0.29
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (21 bp):
ATTAAATTTTACTTTTAAAAA
Found at i:209881 original size:9 final size:9
Alignment explanation
Indices: 209867--209891 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
209857 TCATTATACC
209867 TAAAATAAA
1 TAAAATAAA
209876 TAAAATAAA
1 TAAAATAAA
209885 TAAAATA
1 TAAAATA
209892 TAATTTAAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (9 bp):
TAAAATAAA
Found at i:216849 original size:18 final size:19
Alignment explanation
Indices: 216814--216851 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
216804 CACGGAATGT
216814 AAGATTACCAGTGGGAATAA
1 AAGATTACCAG-GGGAATAA
216834 AAGATTACCA-GGGAATAA
1 AAGATTACCAGGGGAATAA
216852 GATTACTGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 8 0.44
20 10 0.56
ACGTcount: A:0.47, C:0.11, G:0.24, T:0.18
Consensus pattern (19 bp):
AAGATTACCAGGGGAATAA
Found at i:216864 original size:15 final size:16
Alignment explanation
Indices: 216813--216857 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 16
216803 TCACGGAATG
216813 TAAGATTACCAGTGGGAA
1 TAAGATTACCA--GGGAA
216831 TAAAAGATTACCAGGGAA
1 T--AAGATTACCAGGGAA
216849 TAAGATTAC
1 TAAGATTAC
216858 TGGGAATGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
16 8 0.32
18 7 0.28
20 10 0.40
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.22
Consensus pattern (16 bp):
TAAGATTACCAGGGAA
Found at i:220071 original size:15 final size:16
Alignment explanation
Indices: 220048--220077 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
220038 ACTTCTTATG
220048 AACCAAAACTTATAAT
1 AACCAAAACTTATAAT
220064 AACC-AAACTTATAA
1 AACCAAAACTTATAA
220078 ATTAGCATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.57, C:0.20, G:0.00, T:0.23
Consensus pattern (16 bp):
AACCAAAACTTATAAT
Found at i:222217 original size:186 final size:188
Alignment explanation
Indices: 221879--222291 Score: 523
Period size: 186 Copynumber: 2.2 Consensus size: 188
221869 CTATTAGCGG
* * *
221879 TATAAATGACGTTTATACATAACGTCACTTTATAATTGATACTCAATGACAACTATTTACGTCAC
1 TATAAATGAC-ATTATGCATAACGTCACTTTATAATTGATACTCAATGACAACTAGTTACGTCAC
*
221944 TAAATTATATAAAATTTTGTTATTAATAATTCACATCGTCACGAATAATACATTAAAATCAATCT
65 TAAATTATAT--AA--TTGTTATTAATAATTCACATCGTCACGAATAATACAATAAAATCAATCT
* *
222009 ATATGTGACGAAAGAGATATTGTCACATTTTTAGTGACGTAATATAATGTTATCTAATAGTAT
126 ATATGTGACGAAAGAGATATTGTCAAATTTTTAGTGACATAATATAATGTTATCTAATAGTAT
* * **
222072 TATAAATGACACTTATGCATAACGTCATTTTATAACTT-ATATTGC-ATGACAGTTAGTTACGTC
1 TATAAATGACA-TTATGCATAACGTCACTTTATAA-TTGATACT-CAATGACAACTAGTTACGTC
* *
222135 ACTAAATTATAT-A-T-TTATTAATAATTTATATCGTCACGAATAATACAATAAAATCAA-CATA
63 ACTAAATTATATAATTGTTATTAATAATTCACATCGTCACGAATAATACAATAAAATCAATC-TA
* * * *
222196 TATGTTACGAAAGATATATTGTCAAATTTTTAGTGACATAATATAATGTTATGTAATGGTAT
127 TATGTGACGAAAGAGATATTGTCAAATTTTTAGTGACATAATATAATGTTATCTAATAGTAT
* * *
222258 TTTAAATGATGATTATGCATAACGTCACCTTATA
1 TATAAATGA-CATTATGCATAACGTCACTTTATA
222292 CAATTTTCTC
Statistics
Matches: 195, Mismatches: 20, Indels: 17
0.84 0.09 0.07
Matches are distributed among these distances:
185 1 0.01
186 126 0.65
187 2 0.01
190 1 0.01
193 62 0.32
194 3 0.02
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (188 bp):
TATAAATGACATTATGCATAACGTCACTTTATAATTGATACTCAATGACAACTAGTTACGTCACT
AAATTATATAATTGTTATTAATAATTCACATCGTCACGAATAATACAATAAAATCAATCTATATG
TGACGAAAGAGATATTGTCAAATTTTTAGTGACATAATATAATGTTATCTAATAGTAT
Found at i:222363 original size:18 final size:19
Alignment explanation
Indices: 222337--222372 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
222327 TCACCATAAT
*
222337 ATGACAATA-TATATTAAA
1 ATGAAAATATTATATTAAA
222355 ATGAAAATATTATATTAA
1 ATGAAAATATTATATTAA
222373 TCTAAAGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.56, C:0.03, G:0.06, T:0.36
Consensus pattern (19 bp):
ATGAAAATATTATATTAAA
Found at i:222704 original size:12 final size:12
Alignment explanation
Indices: 222687--222714 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
222677 ATTGTTTACC
222687 TGAAAATTGAAG
1 TGAAAATTGAAG
222699 TGAAAATTGAAG
1 TGAAAATTGAAG
222711 TGAA
1 TGAA
222715 GGCACAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25
Consensus pattern (12 bp):
TGAAAATTGAAG
Found at i:224200 original size:20 final size:19
Alignment explanation
Indices: 224171--224214 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
224161 AAATAATTTT
* *
224171 AAAATTATAAATATATATAA
1 AAAATCATAAACAT-TATAA
*
224191 AAAATCATAAACATTGTAA
1 AAAATCATAAACATTATAA
224210 AAAAT
1 AAAAT
224215 AAACCAAAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.30
Consensus pattern (19 bp):
AAAATCATAAACATTATAA
Found at i:225089 original size:23 final size:23
Alignment explanation
Indices: 225043--225092 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
225033 CAATCCAGAT
**
225043 GAAAATAAATTGAAAAGGGAAGA
1 GAAAATAAATTGAAAAACGAAGA
*
225066 GAAAATAAATTGAAAAACGTAGA
1 GAAAATAAATTGAAAAACGAAGA
225089 GAAA
1 GAAA
225093 TTGGAGAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.62, C:0.02, G:0.22, T:0.14
Consensus pattern (23 bp):
GAAAATAAATTGAAAAACGAAGA
Found at i:245699 original size:20 final size:20
Alignment explanation
Indices: 245674--245746 Score: 69
Period size: 20 Copynumber: 3.6 Consensus size: 20
245664 GCGAAATAAA
245674 AATCGCAATGCGTTCTCCAG
1 AATCGCAATGCGTTCTCCAG
245694 AATCGCAAAT-CAGTTC-CCAG
1 AATCGC-AATGC-GTTCTCCAG
* * **
245714 AATCGCAACGCGATTATGAAG
1 AATCGCAATGCG-TTCTCCAG
245735 AATCGCAATGCG
1 AATCGCAATGCG
245747 ATAGTACAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
19 3 0.07
20 20 0.47
21 20 0.47
ACGTcount: A:0.33, C:0.26, G:0.21, T:0.21
Consensus pattern (20 bp):
AATCGCAATGCGTTCTCCAG
Found at i:245809 original size:20 final size:20
Alignment explanation
Indices: 245781--246090 Score: 161
Period size: 20 Copynumber: 15.4 Consensus size: 20
245771 TTCCATAATT
* *
245781 GCAATGCGAATATGAAAATC
1 GCAACGCGAATACGAAAATC
* *
245801 GCAACGCGAACA-TATAAATC
1 GCAACGCGAATACGA-AAATC
* * **
245821 GCAACGTG-ATTCTGACTATC
1 GCAACGCGAATAC-GAAAATC
* * *
245841 GCAACGAGTATCCGTAAAATC
1 GCAACGCGAATACG-AAAATC
* * * *
245862 GCAATGCGTATCCGTAAATC
1 GCAACGCGAATACGAAAATC
245882 GCAACGAC-AATACGTAAAATC
1 GCAACG-CGAATACG-AAAATC
* * * *
245903 GCAACGCGTATCCGTAAATT
1 GCAACGCGAATACGAAAATC
* *
245923 GCAACGAGAATACGTAAATC
1 GCAACGCGAATACGAAAATC
* * *
245943 GCAACGCGTATATGTAAATC
1 GCAACGCGAATACGAAAATC
* *
245963 GCAACGAGAATACGTAAATC
1 GCAACGCGAATACGAAAATC
* * * *
245983 GCAATGCGTATCCGTAAATC
1 GCAACGCGAATACGAAAATC
246003 GCAACGAC-AATACGTAAAATC
1 GCAACG-CGAATACG-AAAATC
* *
246024 GCAACGCGTAT-CCATAAATC
1 GCAACGCGAATACGA-AAATC
*
246044 GCAACGCG-AT-CGATAATTC
1 GCAACGCGAATACGA-AAATC
*
246063 GCAACGCG-AT-CGATAATTC
1 GCAACGCGAATACGA-AAATC
246082 GCAACGCGA
1 GCAACGCGA
246091 TCTCCGGTAT
Statistics
Matches: 231, Mismatches: 46, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
19 39 0.17
20 142 0.61
21 50 0.22
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.20
Consensus pattern (20 bp):
GCAACGCGAATACGAAAATC
Found at i:245953 original size:40 final size:41
Alignment explanation
Indices: 245838--246049 Score: 320
Period size: 41 Copynumber: 5.2 Consensus size: 41
245828 GATTCTGACT
* * *
245838 ATCGCAACGAGTATCCGTAAAATCGCAATGCGTATCCGTAA
1 ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
*
245879 ATCGCAACGACAATACGTAAAATCGCAACGCGTATCCGTAA
1 ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
* **
245920 ATTGCAACGAGAATACGT-AAATCGCAACGCGTATATGTAA
1 ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
*
245960 ATCGCAACGAGAATACGT-AAATCGCAATGCGTATCCGTAA
1 ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
* *
246000 ATCGCAACGACAATACGTAAAATCGCAACGCGTATCCATAA
1 ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
246041 ATCGCAACG
1 ATCGCAACG
246050 CGATCGATAA
Statistics
Matches: 155, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 73 0.47
41 82 0.53
ACGTcount: A:0.38, C:0.24, G:0.18, T:0.19
Consensus pattern (41 bp):
ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
Found at i:246064 original size:19 final size:19
Alignment explanation
Indices: 246022--246092 Score: 115
Period size: 19 Copynumber: 3.7 Consensus size: 19
246012 ATACGTAAAA
* *
246022 TCGCAACGCGTATCCATAAA
1 TCGCAACGCG-ATCGATAAT
246042 TCGCAACGCGATCGATAAT
1 TCGCAACGCGATCGATAAT
246061 TCGCAACGCGATCGATAAT
1 TCGCAACGCGATCGATAAT
246080 TCGCAACGCGATC
1 TCGCAACGCGATC
246093 TCCGGTATCG
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
19 39 0.80
20 10 0.20
ACGTcount: A:0.31, C:0.30, G:0.20, T:0.20
Consensus pattern (19 bp):
TCGCAACGCGATCGATAAT
Found at i:246973 original size:24 final size:24
Alignment explanation
Indices: 246946--246999 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
246936 GTATTCGAAA
246946 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
246970 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
246994 TTTGAT
1 TTTGAT
247000 GATTTTTTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:248957 original size:20 final size:20
Alignment explanation
Indices: 248932--249139 Score: 213
Period size: 20 Copynumber: 10.2 Consensus size: 20
248922 TTAAAAATCA
248932 CGTTGCGATTTACGGATACG
1 CGTTGCGATTTACGGATACG
* *
248952 CGTTGCGATTTTACGTAT-TG
1 CGTTGCGA-TTTACGGATACG
*
248972 TCGTTGCGATTTACGAATACG
1 -CGTTGCGATTTACGGATACG
* * * *
248993 CATTGCGATTTACGTATTCT
1 CGTTGCGATTTACGGATACG
* *
249013 CGTTGCAATTTACAGATACG
1 CGTTGCGATTTACGGATACG
* * *
249033 CGTTGCGATTTACGTATTCT
1 CGTTGCGATTTACGGATACG
249053 CGTTGCGATTTACGGATACG
1 CGTTGCGATTTACGGATACG
* *
249073 CGTTGCGATTTTACGTAT-TG
1 CGTTGCGA-TTTACGGATACG
*
249093 TCGTTGCGATTTACGAATACG
1 -CGTTGCGATTTACGGATACG
*
249114 CGTTGCGATTTTACGGATACT
1 CGTTGCGA-TTTACGGATACG
249135 CGTTG
1 CGTTG
249140 TGATAGTCAG
Statistics
Matches: 153, Mismatches: 28, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
20 104 0.68
21 49 0.32
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.38
Consensus pattern (20 bp):
CGTTGCGATTTACGGATACG
Found at i:248992 original size:41 final size:41
Alignment explanation
Indices: 248932--249165 Score: 316
Period size: 41 Copynumber: 5.8 Consensus size: 41
248922 TTAAAAATCA
* *
248932 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTGT
1 CGTTGCGATTTACGAATACGCGTTGCGATTTTACGTATTCT
*
248973 CGTTGCGATTTACGAATACGCATTGCGA-TTTACGTATTCT
1 CGTTGCGATTTACGAATACGCGTTGCGATTTTACGTATTCT
*
249013 CGTTGCAATTTAC-AGATACGCGTTGCGA-TTTACGTATTCT
1 CGTTGCGATTTACGA-ATACGCGTTGCGATTTTACGTATTCT
* *
249053 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTGT
1 CGTTGCGATTTACGAATACGCGTTGCGATTTTACGTATTCT
* *
249094 CGTTGCGATTTACGAATACGCGTTGCGATTTTACGGATACT
1 CGTTGCGATTTACGAATACGCGTTGCGATTTTACGTATTCT
* *
249135 CGTTGTGATAGT-CAGAAT-CGCGTTGCGATTT
1 CGTTGCGAT-TTAC-GAATACGCGTTGCGATTT
249166 ATATGTTCGT
Statistics
Matches: 174, Mismatches: 14, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 72 0.41
41 96 0.55
42 5 0.03
ACGTcount: A:0.20, C:0.18, G:0.24, T:0.37
Consensus pattern (41 bp):
CGTTGCGATTTACGAATACGCGTTGCGATTTTACGTATTCT
Found at i:249181 original size:20 final size:20
Alignment explanation
Indices: 249152--249204 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
249142 ATAGTCAGAA
*
249152 TCGCGTTGCGATTTAT-ATGT
1 TCGCGTTGCGATTT-TCATAT
*
249172 TCGTGTTGCGATTTTCATAT
1 TCGCGTTGCGATTTTCATAT
249192 TCGCGTTGCGATT
1 TCGCGTTGCGATT
249205 CTGGAAAATC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 1 0.03
20 28 0.97
ACGTcount: A:0.13, C:0.17, G:0.25, T:0.45
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCATAT
Found at i:259934 original size:18 final size:18
Alignment explanation
Indices: 259884--259934 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
259874 ATGGGTTTTC
*
259884 TTTTTTAAAAAATATATAA
1 TTTTTT-AAAATTATATAA
**
259903 TTTTTTAATTTTATATAA
1 TTTTTTAAAATTATATAA
259921 TTTTTTAAAATTAT
1 TTTTTTAAAATTAT
259935 CATATTGTAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
18 21 0.78
19 6 0.22
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
TTTTTTAAAATTATATAA
Found at i:260901 original size:2 final size:2
Alignment explanation
Indices: 260888--260920 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
260878 GAAAATAATA
*
260888 AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
260921 GAAAACATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:261962 original size:19 final size:18
Alignment explanation
Indices: 261938--261995 Score: 62
Period size: 19 Copynumber: 3.1 Consensus size: 18
261928 TGACGACTGA
261938 TGCTTCTGGCCGTTGAAAT
1 TGCTTCTGGCCGTTG-AAT
** *
261957 TGCTTCTGGATGTTGACT
1 TGCTTCTGGCCGTTGAAT
*
261975 TGCTTTCTGGCCGTTGGAT
1 TGC-TTCTGGCCGTTGAAT
261994 TG
1 TG
261996 GGTCAGATCC
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
18 5 0.16
19 26 0.84
ACGTcount: A:0.10, C:0.19, G:0.29, T:0.41
Consensus pattern (18 bp):
TGCTTCTGGCCGTTGAAT
Found at i:262256 original size:33 final size:31
Alignment explanation
Indices: 262240--262389 Score: 99
Period size: 33 Copynumber: 4.5 Consensus size: 31
262230 ATATTTTTTT
262240 AAACTATATATTATATTTAAAAAAGTTTTCA
1 AAACTATATATTATATTTAAAAAAGTTTTCA
* *
262271 AAACTATAT-TATATAGTTTTCAAAATGTTTT-A
1 AAACTATATAT-TATA--TTTAAAAAAGTTTTCA
* * *
262303 AAAATATTATATAAGT-TTTAAAAAACGTTTTTA
1 AAACTA-TATATTA-TATTTAAAAAA-GTTTTCA
* *
262336 AAGCTATATATTATATAATTTATTTAAAAATGTTTTTA
1 AAACTATATA-T-TAT-ATTTA---AAAAA-GTTTTCA
262374 AAACTATATATTATAT
1 AAACTATATATTATAT
262390 AAGTTTTTAA
Statistics
Matches: 93, Mismatches: 11, Indels: 26
0.72 0.08 0.20
Matches are distributed among these distances:
30 1 0.01
31 20 0.22
32 15 0.16
33 23 0.25
34 3 0.03
35 6 0.06
36 3 0.03
37 1 0.01
38 21 0.23
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (31 bp):
AAACTATATATTATATTTAAAAAAGTTTTCA
Found at i:262278 original size:31 final size:32
Alignment explanation
Indices: 262234--262389 Score: 113
Period size: 32 Copynumber: 4.7 Consensus size: 32
262224 TCAAAAATAT
*
262234 TTTTTTAAACTATATATTATATTTAAAAAA-G
1 TTTTTAAAACTATATATTATATTTAAAAAACG
* ** *
262265 TTTTCAAAACTATAT-TATATAGTTTTCAAAATG
1 TTTTTAAAACTATATAT-TATA-TTTAAAAAACG
* *
262298 -TTTTAAAAATATTATATAAGT-TTTAAAAAACG
1 TTTTTAAAACTA-TATATTA-TATTTAAAAAACG
* *
262330 TTTTTAAAGCTATATATTATATAATTTATTTAAAAATG
1 TTTTTAAAACTATATA-T-TAT-ATTTA---AAAAACG
262368 TTTTTAAAACTATATATTATAT
1 TTTTTAAAACTATATATTATAT
262390 AAGTTTTTAA
Statistics
Matches: 96, Mismatches: 15, Indels: 24
0.71 0.11 0.18
Matches are distributed among these distances:
30 1 0.01
31 17 0.18
32 28 0.29
33 16 0.17
34 3 0.03
35 6 0.06
36 3 0.03
37 1 0.01
38 21 0.22
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.47
Consensus pattern (32 bp):
TTTTTAAAACTATATATTATATTTAAAAAACG
Found at i:262346 original size:32 final size:31
Alignment explanation
Indices: 262234--262346 Score: 104
Period size: 31 Copynumber: 3.5 Consensus size: 31
262224 TCAAAAATAT
* *
262234 TTTTTTAAACTATATATTA-TATTTAAAAAAG
1 TTTTTAAAACTATATATAAGT-TTTAAAAAAG
* * *
262265 TTTTCAAAACTATATTATATAGTTTTCAAAATG
1 TTTTTAAAACTATA-TATA-AGTTTTAAAAAAG
*
262298 -TTTTAAAAATATTATATAAGTTTTAAAAAACG
1 TTTTTAAAACTA-TATATAAGTTTTAAAAAA-G
*
262330 TTTTTAAAGCTATATAT
1 TTTTTAAAACTATATAT
262347 TATATAATTT
Statistics
Matches: 65, Mismatches: 11, Indels: 11
0.75 0.13 0.13
Matches are distributed among these distances:
31 22 0.34
32 22 0.34
33 20 0.31
34 1 0.02
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.46
Consensus pattern (31 bp):
TTTTTAAAACTATATATAAGTTTTAAAAAAG
Found at i:262349 original size:37 final size:37
Alignment explanation
Indices: 262222--262496 Score: 226
Period size: 37 Copynumber: 7.8 Consensus size: 37
262212 AATACATATA
* *
262222 TTTCAAAAATATTTTTTTAAACTATATA-T-TAT-A--
1 TTTCAAAAAT-GTTTTTAAAACTATATATTATATAAGT
* *
262255 TTT-AAAAAAGTTTTCAAAACTATA--TTATAT-AGT
1 TTTCAAAAATGTTTTTAAAACTATATATTATATAAGT
262288 TTTC-AAAATG-TTTT-AAA--A-ATATTATATAAGT
1 TTTCAAAAATGTTTTTAAAACTATATATTATATAAGT
* * * *
262319 TTTAAAAAACGTTTTTAAAGCTATATATTATATAATT
1 TTTCAAAAATGTTTTTAAAACTATATATTATATAAGT
*
262356 TATTTAAAAATGTTTTTAAAACTATATATTATATAAGT
1 T-TTCAAAAATGTTTTTAAAACTATATATTATATAAGT
* * * *
262394 TTT-TAAAATGATTTTAAAATTATATGTTATATATA-T
1 TTTCAAAAATGTTTTTAAAACTATATATTATATA-AGT
* * *
262430 TTTCTAAAATGTTTTAAAAACTATATGTTATAT-AGT
1 TTTCAAAAATGTTTTTAAAACTATATATTATATAAGT
* *
262466 TTTCAAAAATATTTTAAAAAACTATATATTA
1 TTTCAAAAATGTTTT-TAAAACTATATATTA
262497 CCCATATTTT
Statistics
Matches: 199, Mismatches: 24, Indels: 34
0.77 0.09 0.13
Matches are distributed among these distances:
28 1 0.01
29 1 0.01
30 7 0.04
31 25 0.13
32 13 0.07
33 15 0.08
34 2 0.01
35 1 0.01
36 45 0.23
37 56 0.28
38 33 0.17
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (37 bp):
TTTCAAAAATGTTTTTAAAACTATATATTATATAAGT
Found at i:262512 original size:37 final size:35
Alignment explanation
Indices: 262207--262517 Score: 164
Period size: 37 Copynumber: 8.8 Consensus size: 35
262197 TAATATAAAT
* * **
262207 TATATAATACATATATTTCAAAAATATTTTTTTAAAC
1 TATATATTACATAT-TTTCAAAAAT-GTTTTAAAAAC
* *
262244 TATATATT--ATA-TTT-AAAAAAGTTTTCAAAAC
1 TATATATTACATATTTTCAAAAATGTTTTAAAAAC
*
262275 --TATATTATATAGTTTTC-AAAATGTTTTAAAAA-
1 TATATATTACATA-TTTTCAAAAATGTTTTAAAAAC
* * * * *
262307 TAT-TATATA-A-GTTTTAAAAAACGTTTTTAAAGC
1 TATATAT-TACATATTTTCAAAAATGTTTTAAAAAC
* * *
262340 TATATATTATATAATTTATTTAAAAATGTTTTTAAAAC
1 TATATATTACAT-A-TT-TTCAAAAATGTTTTAAAAAC
* * *
262378 TATATATTATATAAGTTTT-TAAAATGATTTT-AAAAT
1 TATATATTACAT-A-TTTTCAAAAATG-TTTTAAAAAC
* * *
262414 TATATGTTATATATATTTTCTAAAATGTTTTAAAAAC
1 TATAT-AT-TACATATTTTCAAAAATGTTTTAAAAAC
* * *
262451 TATATGTTATATAGTTTTCAAAAATATTTTAAAAAAC
1 TATATATTACATA-TTTTCAAAAATGTTTT-AAAAAC
262488 TATATATTACCCATATTTTC-AAAATGTTTT
1 TATATATTA--CATATTTTCAAAAATGTTTT
262518 CTTTTTAAAA
Statistics
Matches: 222, Mismatches: 27, Indels: 50
0.74 0.09 0.17
Matches are distributed among these distances:
29 6 0.03
31 15 0.07
32 17 0.08
33 28 0.13
34 7 0.03
35 9 0.04
36 38 0.17
37 56 0.25
38 43 0.19
39 3 0.01
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.47
Consensus pattern (35 bp):
TATATATTACATATTTTCAAAAATGTTTTAAAAAC
Found at i:263365 original size:165 final size:165
Alignment explanation
Indices: 263172--264423 Score: 2429
Period size: 165 Copynumber: 7.6 Consensus size: 165
263162 AAGTTGAATA
** *
263172 TAATCGAACTCGAAGGTCTTTAGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
1 TAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
*
263237 CCTTGGAGCTGAGCGGAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
66 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
263302 TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTG
131 TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTG
263337 TAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
1 TAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
263402 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
66 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
263467 TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTG
131 TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTG
263502 TAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
1 TAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
263567 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
66 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
263632 TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTG
131 TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTG
263667 TAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
1 TAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
263732 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
66 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
263797 TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTG
131 TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTG
263832 TAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
1 TAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
263897 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
66 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
*
263962 TTATGCTGTAAATGATGTGCCCTCAAAGCTGAGTG
131 TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTG
*
263997 TAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGTTGCAAATGATGTG
1 TAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
264062 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGTCACAGATAACCCTTCTAGCCTTGAG
66 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
264126 TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTG
131 TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTG
264161 TAATCGAACTC-GGGGTC-TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
1 TAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
264224 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
66 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
264289 TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTG
131 TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTG
264324 TAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
1 TAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
264389 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTT
66 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTT
264424 GGTGGCAGGT
Statistics
Matches: 1076, Mismatches: 8, Indels: 6
0.99 0.01 0.01
Matches are distributed among these distances:
162 78 0.07
163 83 0.08
164 82 0.08
165 833 0.77
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.29
Consensus pattern (165 bp):
TAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTG
Found at i:267836 original size:18 final size:19
Alignment explanation
Indices: 267795--267839 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
267785 AGTTAATGTG
267795 AATGCAAAGAAAATAACAA
1 AATGCAAAGAAAATAACAA
*
267814 AATGCAAAGAAAATAA-GA
1 AATGCAAAGAAAATAACAA
267832 AATGCAAA
1 AATGCAAA
267840 ATGTCTAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 9 0.36
19 16 0.64
ACGTcount: A:0.67, C:0.09, G:0.13, T:0.11
Consensus pattern (19 bp):
AATGCAAAGAAAATAACAA
Found at i:269603 original size:2 final size:2
Alignment explanation
Indices: 269596--269638 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
269586 GGCGAAAATA
269596 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
269638 A
1 A
269639 GAAAAACATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:270661 original size:19 final size:18
Alignment explanation
Indices: 270637--270694 Score: 62
Period size: 19 Copynumber: 3.1 Consensus size: 18
270627 TGACGACTGA
270637 TGCTTCTGGCCGTTGAAAT
1 TGCTTCTGGCCGTTG-AAT
** *
270656 TGCTTCTGGATGTTGACT
1 TGCTTCTGGCCGTTGAAT
*
270674 TGCTTTCTGGCCGTTGGAT
1 TGC-TTCTGGCCGTTGAAT
270693 TG
1 TG
270695 GGTCAGATCC
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
18 5 0.16
19 26 0.84
ACGTcount: A:0.10, C:0.19, G:0.29, T:0.41
Consensus pattern (18 bp):
TGCTTCTGGCCGTTGAAT
Found at i:270866 original size:14 final size:14
Alignment explanation
Indices: 270849--270880 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
270839 GAAAAAAAAC
270849 ATAAAAAGAAAATA
1 ATAAAAAGAAAATA
*
270863 ATAAAAAGAAGATA
1 ATAAAAAGAAAATA
270877 ATAA
1 ATAA
270881 TAATACTGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.75, C:0.00, G:0.09, T:0.16
Consensus pattern (14 bp):
ATAAAAAGAAAATA
Found at i:271040 original size:37 final size:38
Alignment explanation
Indices: 270997--271075 Score: 115
Period size: 38 Copynumber: 2.1 Consensus size: 38
270987 TGTTTTAAAA
*
270997 ATATTATATAAGTT-TTAAAAAACGTTTTTAAAGCTAT
1 ATATTATATAAGTTATTAAAAAACGTTTTTAAAACTAT
* * *
271034 ATATTATATAATTTATTTAAAAATGTTTTTAAAACTAT
1 ATATTATATAAGTTATTAAAAAACGTTTTTAAAACTAT
271072 ATAT
1 ATAT
271076 ATAAGTTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
37 13 0.35
38 24 0.65
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (38 bp):
ATATTATATAAGTTATTAAAAAACGTTTTTAAAACTAT
Found at i:271097 original size:70 final size:67
Alignment explanation
Indices: 270930--271201 Score: 203
Period size: 71 Copynumber: 4.1 Consensus size: 67
270920 CAAAAATATT
* *
270930 TTTTTAAACTATATATAT-A--TTTAAAAA-GT-TTTCAAAAC--TATATTATA-GTTTTC-AAA
1 TTTTAAAACTATATATATAAGTTTTAAAAACGTATTT-AAAACTATATATTATATATTTTCTAAA
270986 ATG
65 ATG
* * * *
270989 TTTTAAAAATAT-TATATAAGTTTTAAAAAACGTTTTTAAAGCTATATATTATATAATTTATTTA
1 TTTTAAAACTATATATATAAGTTTT-AAAAACGTATTTAAAACTATATATTATAT-ATTT-TCT-
271053 AAAATG
62 AAAATG
* * * *
271059 TTTTTAAAACTATATATATAAGTTTTTAAAATG-ATTTAAAATTATATGTTATATATTTTCTAAA
1 -TTTTAAAACTATATATATAAGTTTTAAAAACGTATTTAAAACTATATATTATATATTTTCTAAA
271123 ATG
65 ATG
* * *
271126 TTTAAAAACTATATGTTATATAGTTTTCAAAAA--TATTTTAAAAAACTATATATTACCCATATT
1 TTTTAAAACTATAT-ATATA-AGTTTT-AAAAACGTA-TTT--AAAACTATATATTA--TATATT
271189 TTC-AAAATG
58 TTCTAAAATG
271198 TTTT
1 TTTT
271202 CTTTTTAAAA
Statistics
Matches: 169, Mismatches: 20, Indels: 35
0.75 0.09 0.16
Matches are distributed among these distances:
58 5 0.03
59 11 0.07
61 3 0.02
62 5 0.03
63 6 0.04
64 3 0.02
65 9 0.05
66 13 0.08
67 13 0.08
68 10 0.06
69 11 0.07
70 23 0.14
71 28 0.17
72 21 0.12
73 8 0.05
ACGTcount: A:0.43, C:0.06, G:0.05, T:0.46
Consensus pattern (67 bp):
TTTTAAAACTATATATATAAGTTTTAAAAACGTATTTAAAACTATATATTATATATTTTCTAAAA
TG
Found at i:271099 original size:32 final size:32
Alignment explanation
Indices: 270930--271178 Score: 154
Period size: 34 Copynumber: 7.5 Consensus size: 32
270920 CAAAAATATT
* *
270930 TTTTTAAACTATATATAT-A---TTTAAAAAG
1 TTTTAAAACTATATATATAAGTTTTTAAAATG
*
270958 TTTTCAAAACTATAT-TAT-AGTTTTCAAAATG
1 TTTT-AAAACTATATATATAAGTTTTTAAAATG
* * *
270989 TTTTAAAAATAT-TATATAAGTTTTAAAAAACG
1 TTTTAAAACTATATATATAAGTTTT-TAAAATG
* *
271021 TTTTTAAAGCTATATATTATATAATTTATTTAAAAATG
1 -TTTTAAAAC--TATA-TATATAAGTT-TTT-AAAATG
271059 TTTTTAAAACTATATATATAAGTTTTTAAAATG
1 -TTTTAAAACTATATATATAAGTTTTTAAAATG
* * *
271092 ATTTAAAATTATATGTTATATA-TTTTCTAAAATG
1 TTTTAAAACTATAT-ATATA-AGTTTT-TAAAATG
* * * *
271126 TTTAAAAACTATATGTTATATAGTTTTCAAAAATA
1 TTTTAAAACTATAT-ATATA-AGTTTT-TAAAATG
271161 TTTTAAAAAACTATATAT
1 TTTT--AAAACTATATAT
271179 TACCCATATT
Statistics
Matches: 178, Mismatches: 23, Indels: 32
0.76 0.10 0.14
Matches are distributed among these distances:
28 8 0.04
29 10 0.06
30 10 0.06
31 17 0.10
32 17 0.10
33 21 0.12
34 30 0.17
35 25 0.14
36 5 0.03
37 19 0.11
38 16 0.09
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.46
Consensus pattern (32 bp):
TTTTAAAACTATATATATAAGTTTTTAAAATG
Found at i:271130 original size:103 final size:101
Alignment explanation
Indices: 270939--271178 Score: 242
Period size: 103 Copynumber: 2.4 Consensus size: 101
270929 TTTTTTAAAC
* * *
270939 TATATATATATTTAAAAA-GTTTTCAAAACTATAT-TATAGTTTTCAAAATGTTTTAAAAATATT
1 TATATATTTATTTAAAAATGTTTTAAAAACTATATATATAGTTTTCAAAATGATTTAAAAATATT
* *
271002 ATATAAGTTTTAAAAAAC-GTTTTTAAAGCTATATAT
66 ATATAAGTTTTAAAAAACTG-TTTAAAAACTATATAT
* *
271038 TATATAATTTATTTAAAAATGTTTTTAAAACTATATATATAAGTTTTTAAAATGATTTAAAATTA
1 TATAT-ATTTATTTAAAAATGTTTTAAAAACTATATATAT-AGTTTTCAAAATGATTTAAAA--A
** *
271103 TATGT-TATATA-TTTTCTAAAA-TGTTTAAAAACTATATGT
62 TAT-TATATA-AGTTTTAAAAAACTGTTTAAAAACTATATAT
* * *
271142 TATATAGTT-TTCAAAAATATTTTAAAAAACTATATAT
1 TATATATTTATTTAAAAATGTTTT-AAAAACTATATAT
271179 TACCCATATT
Statistics
Matches: 118, Mismatches: 13, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
99 5 0.04
100 12 0.10
101 15 0.13
102 15 0.13
103 34 0.29
104 18 0.15
105 17 0.14
106 2 0.02
ACGTcount: A:0.45, C:0.04, G:0.05, T:0.46
Consensus pattern (101 bp):
TATATATTTATTTAAAAATGTTTTAAAAACTATATATATAGTTTTCAAAATGATTTAAAAATATT
ATATAAGTTTTAAAAAACTGTTTAAAAACTATATAT
Found at i:271196 original size:37 final size:34
Alignment explanation
Indices: 270902--271195 Score: 97
Period size: 34 Copynumber: 8.6 Consensus size: 34
270892 TAATATAAAT
* **
270902 TATATAATACATATATTTCAAAAATATTTTTTTAAAC
1 TATATATTACATAT-TTTC-AAAA-ATTTTTAAAAAC
* *
270939 TATATA-T--ATA-TTT-AAAAAGTTTTCAAAAC
1 TATATATTACATATTTTCAAAAATTTTTAAAAAC
270968 --TATATT--ATAGTTTTC-AAAATGTTTTAAAAA-
1 TATATATTACATA-TTTTCAAAAAT-TTTTAAAAAC
* * *
270998 TAT-TATATA-A-GTTTTAAAAAACGTTTTT-AAAGC
1 TATATAT-TACATATTTTCAAAAA--TTTTTAAAAAC
* * *
271031 TATATATTATATAATTTATTTAAAAATGTTTTTAAAAC
1 TATATATTACAT-A-TT-TTCAAAAAT-TTTTAAAAAC
* *
271069 TATATATATA-AGT-TTTT--AAAATGATTT-AAAAT
1 TATATAT-TACA-TATTTTCAAAAAT-TTTTAAAAAC
* * * *
271101 TATATGTTATATATTTTCTAAAATGTTTAAAAAC
1 TATATATTACATATTTTCAAAAATTTTTAAAAAC
* *
271135 TATATGTTATATAGTTTTCAAAAATATTTTAAAAAAC
1 TATATATTACATA-TTTTCAAAAAT-TTTT-AAAAAC
271172 TATATATTACCCATATTTTCAAAA
1 TATATATTA--CATATTTTCAAAA
271196 TGTTTTCTTT
Statistics
Matches: 204, Mismatches: 20, Indels: 65
0.71 0.07 0.22
Matches are distributed among these distances:
27 4 0.02
28 4 0.02
29 9 0.04
30 11 0.05
31 18 0.09
32 27 0.13
33 22 0.11
34 30 0.15
35 12 0.06
36 7 0.03
37 26 0.13
38 28 0.14
39 6 0.03
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (34 bp):
TATATATTACATATTTTCAAAAATTTTTAAAAAC
Found at i:272107 original size:84 final size:84
Alignment explanation
Indices: 271966--272133 Score: 327
Period size: 84 Copynumber: 2.0 Consensus size: 84
271956 GCCCCCCCCC
*
271966 CCCCATGCGTCATGTTGCTGTTCCGATGACAAACACGATCTCTCCTTTGAGAGCAATGGAACTTG
1 CCCCATGCGTCATGTTGCTGTTCCGATGACAAACACGATCTCTCCTTTGAGAGCAATGGAACTTA
272031 CACATGCCGCTAGAAGAAA
66 CACATGCCGCTAGAAGAAA
272050 CCCCATGCGTCATGTTGCTGTTCCGATGACAAACACGATCTCTCCTTTGAGAGCAATGGAACTTA
1 CCCCATGCGTCATGTTGCTGTTCCGATGACAAACACGATCTCTCCTTTGAGAGCAATGGAACTTA
272115 CACATGCCGCTAGAAGAAA
66 CACATGCCGCTAGAAGAAA
272134 GAAGCAAAAG
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
84 83 1.00
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (84 bp):
CCCCATGCGTCATGTTGCTGTTCCGATGACAAACACGATCTCTCCTTTGAGAGCAATGGAACTTA
CACATGCCGCTAGAAGAAA
Found at i:272624 original size:21 final size:20
Alignment explanation
Indices: 272600--272646 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 20
272590 TTAAAAAAAT
272600 AATAAATAAAATAA-GAGATAA
1 AATAAA-AAAATAACGAG-TAA
*
272621 AATATAAAATATAACGAGTAA
1 AATA-AAAAAATAACGAGTAA
272642 AATAA
1 AATAA
272647 GAATTTCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
20 1 0.04
21 17 0.74
22 5 0.22
ACGTcount: A:0.68, C:0.02, G:0.09, T:0.21
Consensus pattern (20 bp):
AATAAAAAAATAACGAGTAA
Found at i:274523 original size:22 final size:22
Alignment explanation
Indices: 274495--274536 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
274485 TCTAAATCCG
274495 TTTGAGATTT-TGAAATTTAAGA
1 TTTGAGATTTATG-AATTTAAGA
274517 TTTGAGATTTATGAATTTAA
1 TTTGAGATTTATGAATTTAA
274537 AGTTTGGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.36, C:0.00, G:0.17, T:0.48
Consensus pattern (22 bp):
TTTGAGATTTATGAATTTAAGA
Found at i:274542 original size:22 final size:21
Alignment explanation
Indices: 274494--274542 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 21
274484 TTCTAAATCC
274494 GTTTGAGATTTTGAAATTTAA
1 GTTTGAGATTTTGAAATTTAA
274515 GATTTGAGATTTATG-AATTTAAA
1 G-TTTGAGATTT-TGAAATTT-AA
274538 GTTTG
1 GTTTG
274543 GAATTAGTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
21 1 0.04
22 19 0.76
23 5 0.20
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (21 bp):
GTTTGAGATTTTGAAATTTAA
Found at i:276930 original size:87 final size:85
Alignment explanation
Indices: 276787--277024 Score: 225
Period size: 87 Copynumber: 2.7 Consensus size: 85
276777 TAATTTTTGA
* * * * *
276787 AATCCCACTTTTTATCTTTATAATTGGGGCTTTAATATTTTT-AATCTCACTTTTTTA-TATTTC
1 AATCTCACTTTTTACCTTTATAATTGAGG-TTTTAT-TTTTTCAATCTCAC-TTTTTACT-TTTA
* *
276850 CACTT-GATGACCT-TAATAATTTTC
62 AAATTGGA-G-CCTCTAATAATTTTC
276874 AATCTCACTTTTTACCTTTATAATTGAGGTATTTGATTTTTTCAATCTCACTTTTTACTTTTAAA
1 AATCTCACTTTTTACCTTTATAATTGAGGT-TTT-ATTTTTTCAATCTCACTTTTTACTTTTAAA
** *
276939 ATTGGAGCCTCTAATTTTTTTT
64 ATTGGAGCCTCTAATAATTTTC
* ** *
276961 AATCTCAC-TTTTACATTTATAATTGAGGCTCCTACTTTTTTCAATCTCACTTTTTACCTTTAAA
1 AATCTCACTTTTTACCTTTATAATTGAGG-TTTTA-TTTTTTCAATCTCACTTTTTACTTTTAAA
277025 TTGAGGTCTT
Statistics
Matches: 129, Mismatches: 14, Indels: 17
0.81 0.09 0.11
Matches are distributed among these distances:
85 1 0.01
86 52 0.40
87 63 0.49
88 13 0.10
ACGTcount: A:0.25, C:0.18, G:0.07, T:0.50
Consensus pattern (85 bp):
AATCTCACTTTTTACCTTTATAATTGAGGTTTTATTTTTTCAATCTCACTTTTTACTTTTAAAAT
TGGAGCCTCTAATAATTTTC
Found at i:277013 original size:42 final size:42
Alignment explanation
Indices: 276760--277110 Score: 241
Period size: 43 Copynumber: 8.2 Consensus size: 42
276750 ATTTTTAATA
* ** * *
276760 TTTATAATTGAAGTCTCTAATTTTTGAAATCCCACTTTTTATC
1 TTTATAATTG-AGGCTCTAATTTTTTCAATCTCACTTTTTACC
* * **
276803 TTTATAATTGGGGCTTTAATATTTTT-AATCTCACTTTTTTATA
1 TTTATAATTGAGGCTCTAAT-TTTTTCAATCTCAC-TTTTTACC
** * * *
276846 TTTCCACTTGATGAC-CTTAATAATTTTCAATCTCACTTTTTACC
1 TTTATAATTGA-GGCTC-TAAT-TTTTTCAATCTCACTTTTTACC
* * * *
276890 TTTATAATTGAGGTATTTGATTTTTTCAATCTCACTTTTTACT
1 TTTATAATTGAGG-CTCTAATTTTTTCAATCTCACTTTTTACC
* * * *
276933 TTTAAAATTGGAGCCTCTAATTTTTTTTAATCTCAC-TTTTACA
1 TTTATAATT-GAGGCTCTAA-TTTTTTCAATCTCACTTTTTACC
*
276976 TTTATAATTGAGGCTCCTACTTTTTTCAATCTCACTTTTTACC
1 TTTATAATTGAGGCT-CTAATTTTTTCAATCTCACTTTTTACC
* * *
277019 TTTA-AATTGAGG-TCTTTATTTTTT-TATAT-ACTTTTTACC
1 TTTATAATTGAGGCTC-TAATTTTTTCAATCTCACTTTTTACC
* * * * *
277058 TTTATAATTGATGTTCCTAATTTTTTTTAAT-TATACTTTTTACT
1 TTTATAATTGAGGCT-CTAA-TTTTTTCAATCT-CACTTTTTACC
277102 TTTATAATT
1 TTTATAATT
277111 TAAGCCCTCA
Statistics
Matches: 245, Mismatches: 44, Indels: 37
0.75 0.13 0.11
Matches are distributed among these distances:
39 14 0.06
40 11 0.04
41 11 0.04
42 49 0.20
43 89 0.36
44 63 0.26
45 8 0.03
ACGTcount: A:0.25, C:0.15, G:0.07, T:0.53
Consensus pattern (42 bp):
TTTATAATTGAGGCTCTAATTTTTTCAATCTCACTTTTTACC
Found at i:283006 original size:2 final size:2
Alignment explanation
Indices: 282994--283061 Score: 120
Period size: 2 Copynumber: 34.5 Consensus size: 2
282984 AATATCTTAT
*
282994 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
283036 TA TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
283062 TTTCTTAAAA
Statistics
Matches: 63, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
1 1 0.02
2 62 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:285175 original size:11 final size:12
Alignment explanation
Indices: 285146--285174 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
285136 TGTAAGATTT
285146 GTTTTTAATAAA
1 GTTTTTAATAAA
285158 GTTTTTAATAAA
1 GTTTTTAATAAA
285170 GTTTT
1 GTTTT
285175 AGATGATGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (12 bp):
GTTTTTAATAAA
Found at i:287192 original size:21 final size:21
Alignment explanation
Indices: 287168--287216 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
287158 AAGCGAAAGA
*
287168 AGCAGCAAGAGAAGTAGAGAG
1 AGCAGCAAGAGAAGCAGAGAG
* *
287189 AGCAGCGATAGAAGCAGAGAG
1 AGCAGCAAGAGAAGCAGAGAG
*
287210 AGAAGCA
1 AGCAGCA
287217 TAATTTCAGA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.47, C:0.12, G:0.37, T:0.04
Consensus pattern (21 bp):
AGCAGCAAGAGAAGCAGAGAG
Found at i:295301 original size:111 final size:111
Alignment explanation
Indices: 295083--295432 Score: 533
Period size: 112 Copynumber: 3.1 Consensus size: 111
295073 TTGTTGGTTT
* *
295083 GTGTCGATACTTTATAAAAATATATTGATCCATAACAATATAACAGGTAAAAAAATGATAAAACC
1 GTGTCGATACTTTATAAAAATATATTGATCCATAACAATATAACA-GTTAAAAAATGACAAAACC
*
295148 GGTTTATAAATGACAAAAC-AGATAAAGCGCTACCGGATATATTGAAA
65 GGTCTATAAATGACAAAACAAG-TAAAGCGCTACCGGATATATTGAAA
*
295195 GTGTCGATACTTTATAAAAATATATTGATCTATAACAATATAACAGTTAAAAAATGACAAAACCG
1 GTGTCGATACTTTATAAAAATATATTGATCCATAACAATATAACAGTTAAAAAATGACAAAACCG
***
295260 GTCTATAAATGACAAAACAAGTAAAGCGCTACAATATATATTGAAA
66 GTCTATAAATGACAAAACAAGTAAAGCGCTACCGGATATATTGAAA
* *
295306 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACA-TGTAAACAAATGACAAAAC
1 GTGTCGATACTTTATAAAAATATATTGATCCATAACAATATAACAGT-TAAA-AAATGACAAAAC
* * *
295370 CGGTCTATAAATGACAAAACAAGTAAAGCTCTACCGGATATGTTGATA
64 CGGTCTATAAATGACAAAACAAGTAAAGCGCTACCGGATATATTGAAA
*
295418 GTGTCGATATTTTAT
1 GTGTCGATACTTTAT
295433 GTAACCCCCC
Statistics
Matches: 218, Mismatches: 17, Indels: 6
0.90 0.07 0.02
Matches are distributed among these distances:
110 1 0.00
111 103 0.47
112 114 0.52
ACGTcount: A:0.45, C:0.13, G:0.14, T:0.27
Consensus pattern (111 bp):
GTGTCGATACTTTATAAAAATATATTGATCCATAACAATATAACAGTTAAAAAATGACAAAACCG
GTCTATAAATGACAAAACAAGTAAAGCGCTACCGGATATATTGAAA
Done.