genome.fa.s8066.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008066.1 Hibiscus syriacus cultivar Beakdansim tig00110564_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100046

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1353--1407	18	3.1	18	100	0	110	18	21	32	27	1.96
2003--2043	21	2.0	21	100	0	82	26	24	24	24	2.00
5863--6316	230	2.0	230	98	0	881	40	10	14	35	1.80
7616--7773	70	2.3	70	77	0	172	43	18	16	22	1.88
8835--8889	24	2.3	24	100	0	110	34	5	3	56	1.40
8835--8897	24	2.6	24	90	5	74	36	6	3	53	1.42
20316--20364	25	2.0	25	88	11	75	59	0	8	32	1.27
20581--20631	28	1.9	25	84	11	66	49	3	1	45	1.32
28043--28102	29	2.0	31	90	6	97	35	6	16	41	1.75
29018--29059	14	2.7	16	85	10	52	9	14	11	64	1.50
31267--31310	13	3.5	13	90	6	72	18	52	15	13	1.75
31359--31411	27	2.0	27	84	0	70	52	0	0	47	1.00
31409--31463	24	2.3	24	87	0	74	25	45	14	14	1.83
31431--31463	12	2.8	12	95	0	57	30	48	12	9	1.71
33022--33073	20	2.7	20	88	11	74	53	0	0	46	1.00
33025--33085	17	3.4	17	77	18	52	54	0	0	45	1.00
33263--33326	26	2.5	25	85	9	85	37	1	0	60	1.06
34744--34793	15	3.4	15	71	15	50	62	2	6	30	1.31
35021--35060	20	2.0	20	95	0	71	47	0	27	25	1.52
37270--37335	21	3.2	21	64	20	57	28	18	24	28	1.98
37265--37378	41	2.8	41	95	0	201	29	18	21	30	1.97
37291--37359	20	3.4	20	66	18	61	30	15	24	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38144--38181	18	2.2	18	90	4	60	57	2	2	36	1.26
38221--38264	7	6.1	7	97	2	79	72	0	0	27	0.85
38206--38264	21	2.6	22	86	13	84	71	0	1	27	0.96
38206--38280	7	9.4	8	81	12	68	70	0	2	26	1.00
38228--38320	32	3.0	30	75	10	89	68	1	2	27	1.07
41807--41862	6	9.3	6	84	7	60	37	26	0	35	1.57
41800--41862	18	3.5	17	82	8	72	36	25	1	36	1.66
41834--41882	18	2.8	17	84	9	62	38	18	0	42	1.50
42008--42104	46	2.1	46	86	0	131	31	20	25	21	1.98
42008--42095	23	3.8	23	81	0	104	31	21	25	21	1.98
41995--42104	23	4.8	23	80	2	96	30	22	25	20	1.98
42240--42315	14	5.2	13	73	21	55	36	22	7	32	1.83
42255--42327	22	3.3	22	65	14	60	38	21	6	32	1.80
42206--42431	44	5.0	44	79	4	220	35	19	6	37	1.78
49040--49071	15	2.1	15	94	0	55	34	12	31	21	1.91
49063--49129	29	2.3	29	97	0	125	28	13	25	32	1.93
54367--54445	2	39.5	2	97	0	149	48	0	0	51	1.00
54472--54509	19	2.0	19	89	0	58	63	2	0	34	1.09
57255--57288	13	2.7	13	86	4	52	29	5	14	50	1.67
57644--57746	23	4.4	23	82	2	107	16	23	24	35	1.95
63223--63257	18	1.9	18	88	0	52	74	2	2	20	1.08
63492--63530	19	2.0	20	90	10	62	74	5	0	20	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69796--69973	30	6.0	29	67	12	83	19	11	12	56	1.67
69785--69941	59	2.7	59	77	2	181	19	10	12	57	1.64
82610--82661	16	3.2	17	72	22	58	42	0	19	38	1.51
84171--84282	35	3.2	34	84	5	143	41	23	0	33	1.60
85897--86005	35	3.1	34	84	2	128	32	1	23	42	1.65
86136--86198	29	2.2	29	82	5	74	38	9	22	30	1.86
86850--87091	30	8.1	29	75	12	181	53	1	5	39	1.34
86865--86919	27	2.0	27	89	0	83	54	0	3	41	1.18
87728--87760	16	2.1	16	94	5	59	78	0	0	21	0.75
91851--91890	18	2.2	19	86	4	55	52	2	17	27	1.57
93572--93609	19	2.0	19	94	0	67	28	10	28	31	1.90
94071--94439	20	18.5	20	85	4	458	34	26	18	20	1.96
95112--95157	23	2.0	23	86	4	65	26	13	21	39	1.90
97643--97947	19	17.4	19	78	17	340	46	18	20	14	1.83
97696--97773	14	4.8	15	71	22	52	43	19	24	12	1.86
97710--97928	33	6.2	33	78	16	196	47	17	20	15	1.83
97671--97947	52	5.2	53	87	8	356	46	17	20	14	1.83
97643--97979	141	2.4	136	89	6	493	46	18	20	14	1.84
97713--97985	52	5.2	51	86	9	231	45	17	20	15	1.85
97976--98076	20	5.6	19	82	14	142	14	23	17	43	1.87
98183--98217	13	2.7	13	90	0	61	48	22	0	28	1.51

Tables:   1

The End!