genome.fa.s8067.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008067.1 Hibiscus syriacus cultivar Beakdansim tig00110565_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68735

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5292--5326	18	1.9	18	88	0	52	74	2	2	20	1.08
11790--11934	57	2.5	59	74	6	154	20	10	13	56	1.65
24480--24531	16	3.2	17	72	22	58	42	0	19	38	1.51
26029--26140	35	3.2	34	84	5	143	41	23	0	33	1.60
27754--27862	35	3.1	34	84	2	128	32	1	23	42	1.65
28721--28773	27	2.0	27	88	0	79	54	0	3	41	1.18
28706--28941	30	7.8	31	75	16	165	53	1	5	39	1.34
28706--28943	61	3.9	60	76	16	204	52	1	5	39	1.34
29592--29624	16	2.1	16	94	5	59	78	0	0	21	0.75
29592--29645	16	3.7	15	76	20	53	72	1	0	25	0.95
29631--29686	21	2.8	19	76	12	58	64	8	0	26	1.23
33721--33759	17	2.2	18	86	4	53	51	2	17	28	1.59
35441--35478	19	2.0	19	94	0	67	28	10	28	31	1.90
35943--36311	20	18.5	20	85	4	458	34	26	18	20	1.96
36984--37030	24	2.0	24	87	8	69	25	14	21	38	1.92
37205--37229	12	2.1	12	100	0	50	72	0	28	0	0.86
39533--39839	19	17.4	19	79	16	358	47	18	20	14	1.83
39561--39839	52	5.2	53	90	5	358	47	17	20	14	1.83
39600--39839	71	3.4	71	83	11	355	47	17	20	15	1.83
39533--39871	142	2.4	137	89	6	497	46	18	20	14	1.83
39868--39969	19	5.6	19	85	12	151	14	23	17	44	1.86
40075--40111	14	2.6	14	91	0	65	45	21	0	32	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42069--42125	14	3.7	14	77	20	60	45	22	21	10	1.82
42050--42142	33	2.8	33	95	0	168	47	21	20	10	1.80
42013--42147	19	7.6	19	76	16	128	45	23	19	11	1.82
42143--42271	19	7.3	19	73	17	116	9	17	27	45	1.78
42143--42234	33	2.8	33	93	3	150	7	18	28	45	1.76
42315--42866	93	6.1	88	96	3	889	45	19	12	22	1.84
42315--42866	185	3.0	186	94	5	999	45	19	12	22	1.84
44571--44660	14	5.7	14	74	23	81	42	23	25	8	1.83
44563--44677	33	3.5	33	95	0	212	45	20	24	9	1.81
44570--44682	19	6.8	18	72	23	88	43	22	24	9	1.83
44694--44748	14	3.6	14	73	21	56	9	27	23	40	1.85
44869--44939	33	2.2	33	92	0	115	47	18	22	11	1.80
45121--45175	22	2.5	22	81	0	74	20	16	40	23	1.91
45321--45514	20	9.6	20	82	5	221	19	19	25	35	1.95
45321--45514	60	3.2	60	83	0	253	19	19	25	35	1.95
45507--45583	21	3.7	20	70	13	57	27	16	23	32	1.96
45569--45620	20	2.6	20	96	0	95	21	13	26	38	1.90
49896--49923	2	14.0	2	100	0	56	50	0	0	50	1.00
51400--51425	3	8.7	3	100	0	52	30	0	0	69	0.89
52191--52249	22	2.6	22	82	15	68	27	1	1	69	1.07
52218--52282	17	3.8	17	71	15	53	24	3	1	70	1.10
55919--56000	42	1.9	43	87	7	123	18	12	25	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57385--57419	12	2.9	12	86	0	52	17	48	5	28	1.69
58459--58494	2	18.0	2	100	0	72	50	0	0	50	1.00
58935--58998	32	2.0	32	90	0	101	32	21	4	40	1.74
62582--63085	257	2.0	255	85	8	684	27	11	18	41	1.85
63499--63546	18	2.7	18	90	3	71	25	31	12	31	1.92
66621--66662	23	2.0	21	86	13	59	50	0	26	23	1.50
67002--67057	19	3.0	19	86	2	78	39	1	5	53	1.34
68319--68428	34	3.2	34	87	5	150	40	22	0	35	1.61

Tables:   1

The End!