genome.fa.s8068.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008068.1 Hibiscus syriacus cultivar Beakdansim tig00110566_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71683

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1519--1618	19	5.8	18	72	22	90	43	22	25	10	1.84
1508--1596	14	5.7	14	73	24	72	42	23	24	8	1.83
1500--1613	33	3.5	33	93	1	203	45	21	23	9	1.81
1630--1684	14	3.6	14	73	21	56	9	27	23	40	1.85
1805--1875	33	2.2	33	92	0	115	47	18	22	11	1.80
2057--2111	22	2.5	22	81	0	74	20	16	40	23	1.91
2253--2445	20	9.6	20	82	6	221	19	19	25	35	1.95
2255--2425	59	2.8	60	83	6	220	19	18	26	35	1.95
2438--2514	21	3.7	20	70	13	57	27	16	23	32	1.96
2500--2551	20	2.6	20	96	0	95	21	13	26	38	1.90
6823--6854	2	16.0	2	100	0	64	50	0	0	50	1.00
8333--8361	3	9.7	3	100	0	58	31	0	0	68	0.89
9121--9179	22	2.6	22	82	15	68	27	1	1	69	1.07
9148--9212	17	3.8	17	71	15	53	24	3	1	70	1.10
12861--12943	43	1.9	43	87	4	123	19	12	25	43	1.85
14332--14366	12	2.9	12	86	0	52	17	48	5	28	1.69
15401--15438	2	19.0	2	100	0	76	50	0	0	50	1.00
15888--15951	32	2.0	32	90	0	101	32	21	4	40	1.74
19543--19587	21	2.0	21	91	8	72	8	8	26	55	1.60
19572--20081	268	1.9	262	88	4	765	28	11	19	41	1.85
20498--20545	18	2.7	18	90	3	71	25	31	12	31	1.92
24033--24089	19	3.0	19	86	0	78	38	1	5	54	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25387--25498	35	3.2	35	89	0	170	41	22	0	34	1.60
26554--26666	35	3.2	34	88	5	163	34	0	22	42	1.60
27413--27463	20	2.5	20	83	0	66	37	19	25	17	1.94
27452--27586	20	6.7	20	79	7	112	33	23	17	25	1.96
27430--27586	81	1.9	82	81	8	187	34	22	19	23	1.96
27450--27580	61	2.1	61	85	0	172	35	23	16	24	1.95
28022--28085	20	3.2	20	84	6	76	15	17	21	45	1.85
29405--29449	18	2.5	18	88	0	72	26	44	15	13	1.83
29942--30051	19	6.1	19	77	15	72	42	20	21	14	1.88
29942--29997	20	2.8	20	81	2	69	39	21	23	16	1.92
29970--30051	19	4.6	19	76	17	104	45	20	20	13	1.85
30088--30144	20	2.9	19	79	7	69	17	22	21	38	1.93
30183--30243	25	2.4	25	76	18	63	26	6	16	50	1.69
30511--30598	41	2.1	42	85	2	124	21	43	14	20	1.88
32015--32049	14	2.5	14	85	0	52	31	0	20	48	1.50
32178--32252	19	4.6	16	76	20	59	48	17	20	14	1.82
32188--32236	19	2.6	19	96	0	89	51	16	18	14	1.77
32274--32369	20	4.8	20	75	7	97	17	20	20	40	1.91
32262--32349	40	2.4	36	83	12	108	15	20	21	42	1.89
32274--32369	40	2.4	41	84	5	124	17	20	20	40	1.91
32583--32632	20	2.5	20	80	0	73	22	18	22	38	1.94
32597--32661	23	3.0	22	71	8	62	21	16	23	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32661--32712	20	2.5	21	84	3	61	19	23	17	40	1.91
32909--32942	12	2.9	12	86	4	52	17	41	5	35	1.74
33498--33551	24	2.2	24	90	0	81	22	16	20	40	1.91
33726--33750	12	2.1	12	100	0	50	72	0	28	0	0.86
36042--36168	33	3.8	33	84	4	184	44	19	21	14	1.87
36043--36175	66	2.0	66	94	0	230	42	19	21	16	1.89
36183--36239	14	3.7	14	75	20	60	8	24	22	43	1.81
36168--36257	33	2.7	33	94	0	153	13	22	21	43	1.87
36197--36257	19	3.5	19	72	21	69	11	22	21	44	1.84
36367--36400	14	2.4	14	95	0	59	44	23	0	32	1.54
37612--37727	21	5.5	21	65	8	56	23	21	32	22	1.98
37592--37796	42	4.9	42	80	2	198	23	18	36	21	1.95
37622--37796	84	2.1	84	97	0	332	24	17	37	21	1.94
38016--38200	91	2.0	90	89	6	282	47	17	12	22	1.82
39887--39975	20	4.8	19	72	18	80	44	19	23	12	1.84
39912--39975	33	1.9	34	90	3	103	42	21	25	10	1.85
39970--40042	19	3.8	19	78	7	67	13	17	23	45	1.84
39987--40039	19	2.7	19	85	2	70	13	18	22	45	1.84
40560--40612	20	2.7	20	93	0	88	26	20	28	24	1.99
40621--40674	20	2.7	20	97	0	99	25	18	24	31	1.97
40561--40677	61	1.9	61	85	0	162	23	17	24	33	1.97
40561--40695	61	2.2	61	81	2	155	22	20	24	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40745--40785	21	2.0	21	85	0	55	34	31	17	17	1.93
43137--43200	21	3.1	21	77	6	69	26	25	10	37	1.89
44565--44617	24	2.4	22	77	17	56	69	5	20	3	1.25
44666--44712	22	2.1	23	88	4	69	42	0	44	12	1.42
47953--48002	4	12.5	4	86	0	55	52	8	0	40	1.31
47953--48002	6	8.3	6	84	0	55	52	8	0	40	1.31
47954--48002	10	4.9	10	87	0	53	53	8	0	38	1.31
51482--51537	18	3.3	17	70	7	51	37	0	0	62	0.95
54722--54766	22	2.0	22	100	0	90	40	8	13	37	1.76
57859--57900	21	2.0	21	95	0	75	16	14	21	47	1.82

Tables:   1

The End!