genome.fa.s807.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000807.1 Hibiscus syriacus cultivar Beakdansim tig00001565_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66092

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2128--2169	21	2.0	20	86	13	59	54	2	0	42	1.13
3144--3172	13	2.1	14	93	6	51	51	10	0	37	1.36
3273--3328	29	2.0	28	82	10	69	39	1	17	41	1.60
11089--11222	29	4.6	29	76	5	119	20	15	6	56	1.62
11089--11222	58	2.3	58	84	2	171	20	15	6	56	1.62
11089--11222	14	9.3	14	68	8	54	20	15	6	56	1.62
11735--11796	12	5.2	13	80	7	62	35	1	3	59	1.23
11743--11796	3	18.0	3	84	7	65	35	1	3	59	1.26
20759--20925	32	5.2	32	91	2	237	28	13	25	33	1.93
21034--21119	34	2.5	34	90	0	127	32	20	12	33	1.91
21448--21809	36	10.1	36	77	11	300	27	24	12	36	1.91
21473--21568	21	5.1	21	63	27	72	26	27	10	36	1.89
21600--21644	15	3.0	15	86	0	63	26	31	13	28	1.94
21564--21664	51	2.0	51	94	0	175	24	26	13	34	1.93
21632--21716	21	4.4	20	68	20	56	25	24	11	37	1.90
21581--21740	56	2.9	56	83	8	163	28	24	11	35	1.91
21876--22106	43	5.1	43	75	13	221	29	11	30	29	1.92
22135--22714	90	6.4	90	92	1	966	24	19	22	33	1.97
22135--22714	181	3.2	181	96	0	1040	24	19	22	33	1.97
22904--22951	3	16.0	3	82	8	53	35	2	4	58	1.29
25210--25240	14	2.2	14	100	0	62	48	0	0	51	1.00
29303--29548	54	4.5	54	89	2	341	30	16	15	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29392--29597	108	1.9	108	79	4	227	31	16	16	34	1.92
30357--30409	26	2.0	26	96	0	97	37	1	35	24	1.67
34430--34469	11	3.5	11	83	6	53	72	0	15	12	1.12
34430--34463	12	2.9	12	86	4	52	70	0	17	11	1.16
34430--34478	21	2.3	20	86	13	64	75	0	14	10	1.04
34430--34479	20	2.3	21	86	10	66	76	0	14	10	1.03
34466--34519	15	3.5	15	80	14	65	81	3	11	3	0.95
36898--36932	9	3.9	9	84	0	52	34	14	0	51	1.42
37200--37248	21	2.3	21	82	0	53	40	24	18	16	1.90
39013--40084	259	4.1	258	88	1	1470	31	16	18	33	1.93
39396--39501	42	2.5	42	83	1	142	26	22	19	31	1.98
39658--39760	41	2.5	42	76	9	122	24	22	22	31	1.99
39864--40277	198	2.1	198	87	0	587	27	16	20	35	1.94
40062--40949	258	3.4	256	82	3	1041	30	14	17	36	1.90
41073--41144	3	23.7	3	77	8	65	36	1	1	61	1.14
41376--41408	17	1.9	17	100	0	66	36	30	15	18	1.91
41471--41519	22	2.1	24	85	7	66	38	40	10	10	1.73
42097--42139	22	2.0	22	86	9	61	11	16	4	67	1.38
44451--44493	22	2.0	22	86	9	61	11	16	4	67	1.38
45096--45138	18	2.4	18	88	7	61	23	6	2	67	1.27
45727--45841	29	4.0	29	87	0	176	23	15	5	55	1.60
45727--45792	15	4.6	14	74	7	51	24	12	6	57	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45828--46014	95	2.0	96	93	1	322	18	13	4	62	1.48
45985--46030	16	2.9	16	96	0	83	17	15	0	67	1.24
46339--46363	13	1.9	13	100	0	50	20	0	0	80	0.72
46339--46376	18	2.1	18	85	9	51	21	2	0	76	0.91
48762--48812	2	25.5	2	100	0	102	49	0	0	50	1.00
52724--52966	95	2.5	95	91	4	373	33	17	19	29	1.95
54192--54955	85	9.0	85	87	1	1041	34	21	19	24	1.97
56644--56678	2	17.5	2	100	0	70	48	0	0	51	1.00
56785--56814	2	15.0	2	100	0	60	50	0	0	50	1.00
56935--56964	15	1.9	16	93	6	53	23	0	3	73	0.98
56956--56983	5	5.6	5	100	0	56	35	0	0	64	0.94
62184--62230	20	2.4	19	76	13	51	46	14	2	36	1.57

Tables:   1

The End!