Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008071.1 Hibiscus syriacus cultivar Beakdansim tig00110569_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1969971
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
File 1 of 8
Found at i:4495 original size:10 final size:11
Alignment explanation
Indices: 4411--4550 Score: 59
Period size: 13 Copynumber: 11.0 Consensus size: 11
4401 AACCCTAAAC
4411 CCTAAACCCTAAA
1 CCTAAACCCT--A
4424 CCCTAAACCCTAA
1 -CCTAAACCCT-A
4437 CCCTAAACCCTAA
1 -CCTAAACCCT-A
*
4450 CCCTGAACCCTAAA
1 -CCTAAACCCT--A
*
4464 CC-CAACCCTAAA
1 CCTAAACCCT--A
4476 CCTAAACCCTA
1 CCTAAACCCTA
4487 CCT-AACCCTAAA
1 CCTAAACCCT--A
4499 CCCTAAACCCTAAA
1 -CCTAAACCCT--A
4513 CCCTAAACCCTAAA
1 -CCTAAACCCT--A
4527 CCTAAACCCTAA
1 CCTAAACCCT-A
4539 CCCTAAACCCTA
1 -CCTAAACCCTA
4551 AACCCTGAAC
Statistics
Matches: 116, Mismatches: 3, Indels: 16
0.86 0.02 0.12
Matches are distributed among these distances:
10 6 0.05
11 4 0.03
12 15 0.13
13 56 0.48
14 35 0.30
ACGTcount: A:0.40, C:0.44, G:0.01, T:0.15
Consensus pattern (11 bp):
CCTAAACCCTA
Found at i:7209 original size:7 final size:7
Alignment explanation
Indices: 1--10825 Score: 10264
Period size: 7 Copynumber: 1591.4 Consensus size: 7
*
1 CCCTAAA
1 CCCTGAA
*
8 CCCTAAA
1 CCCTGAA
*
15 CCCTAAA
1 CCCTGAA
*
22 CCCTAAA
1 CCCTGAA
29 CCCT-AA
1 CCCTGAA
35 CCCT-AA
1 CCCTGAA
41 CCCTGAA
1 CCCTGAA
48 CCCTGAA
1 CCCTGAA
55 CCCTGAAA
1 CCCTG-AA
63 CCCTGAA
1 CCCTGAA
*
70 -CCTAAA
1 CCCTGAA
76 CCCTGAA
1 CCCTGAA
*
83 -CCTAAA
1 CCCTGAA
*
89 CCCCTAAA
1 -CCCTGAA
97 CCCT-AA
1 CCCTGAA
103 CCCTGAA
1 CCCTGAA
*
110 CCCTAAA
1 CCCTGAA
117 CCCTGAA
1 CCCTGAA
*
124 CCCTAAA
1 CCCTGAA
131 CCCTGAA
1 CCCTGAA
*
138 CCCTAAAA
1 CCCT-GAA
*
146 CCCTAAA
1 CCCTGAA
*
153 CCCTAAA
1 CCCTGAA
*
160 CCCTAAA
1 CCCTGAA
167 CCCT-AA
1 CCCTGAA
*
173 CCCTAAA
1 CCCTGAA
*
180 ACCTGAAA
1 CCCTG-AA
*
188 CCCTAAA
1 CCCTGAA
195 CCCT-AA
1 CCCTGAA
201 CCCT-AA
1 CCCTGAA
207 CCCCCTGAA
1 --CCCTGAA
*
216 CCCTAAA
1 CCCTGAA
*
223 CCCTAAA
1 CCCTGAA
230 CCCT-AA
1 CCCTGAA
*
236 CCCTAAA
1 CCCTGAA
*
243 CCCTAAAA
1 CCCT-GAA
251 CCCT-AA
1 CCCTGAA
*
257 CCCTAAA
1 CCCTGAA
*
264 CCCTAAA
1 CCCTGAA
271 CCCTGAA
1 CCCTGAA
278 CCC-GAA
1 CCCTGAA
*
284 CCCTAAA
1 CCCTGAA
*
291 CCCTAAA
1 CCCTGAA
298 CCCTGAAA
1 CCCTG-AA
306 CCCT-AA
1 CCCTGAA
*
312 CCCTAAA
1 CCCTGAA
*
319 CCCTAAA
1 CCCTGAA
326 CCCT-AA
1 CCCTGAA
*
332 CCCTAAA
1 CCCTGAA
339 CCCTGAA
1 CCCTGAA
346 CCCTGAA
1 CCCTGAA
*
353 CCCTAAA
1 CCCTGAA
*
360 CCCTAAA
1 CCCTGAA
*
367 CCCTAAA
1 CCCTGAA
374 CCCTGAA
1 CCCTGAA
381 CCCT-AA
1 CCCTGAA
*
387 -CCTAAA
1 CCCTGAA
*
393 CCCTAAA
1 CCCTGAA
*
400 CCCTAAA
1 CCCTGAA
407 CCCT-AA
1 CCCTGAA
*
413 ACCT-AA
1 CCCTGAA
* *
419 ACCTAAA
1 CCCTGAA
*
426 CCCTAAA
1 CCCTGAA
*
433 CCCTAAA
1 CCCTGAA
*
440 CCCTAAA
1 CCCTGAA
447 CCCT-AA
1 CCCTGAA
*
453 CCCTAAA
1 CCCTGAA
460 CCCTGAAA
1 CCCTG-AA
*
468 CCCTAAA
1 CCCTGAA
475 CCCTGAA
1 CCCTGAA
482 --C-GAA
1 CCCTGAA
*
486 CCCTAAA
1 CCCTGAA
*
493 CCCTAAA
1 CCCTGAA
*
500 CCCTAAA
1 CCCTGAA
*
507 CCCTAAA
1 CCCTGAA
514 CCCT-AA
1 CCCTGAA
520 CCCT-AA
1 CCCTGAA
526 CCCT-AA
1 CCCTGAA
532 CCCT-AA
1 CCCTGAA
*
538 CCCTAAA
1 CCCTGAA
*
545 CCCTAAA
1 CCCTGAA
*
552 CCCTAAA
1 CCCTGAA
559 CCCT-AA
1 CCCTGAA
565 CCCTGAA
1 CCCTGAA
572 CCCT-AA
1 CCCTGAA
*
578 CCCTAAA
1 CCCTGAA
585 CCCTGAA
1 CCCTGAA
592 CCCT-AA
1 CCCTGAA
*
598 CCCTAAA
1 CCCTGAA
605 CCC--AA
1 CCCTGAA
610 CCCT-AA
1 CCCTGAA
* *
616 ACCTAAA
1 CCCTGAA
623 CCCT-AA
1 CCCTGAA
*
629 CCCTAAA
1 CCCTGAA
*
636 CCCTAAAA
1 CCCT-GAA
644 CCCTGAAA
1 CCCTG-AA
652 CCCT-AA
1 CCCTGAA
*
658 CCCTAAA
1 CCCTGAA
665 CCCT-AA
1 CCCTGAA
671 CCCTGAA
1 CCCTGAA
678 CCCT-AA
1 CCCTGAA
684 CCC--AA
1 CCCTGAA
*
689 -CCTAAA
1 CCCTGAA
695 CCCT-AA
1 CCCTGAA
*
701 CCCTAAA
1 CCCTGAA
*
708 CCCTAAA
1 CCCTGAA
715 CCCT-AA
1 CCCTGAA
721 CCCT-AA
1 CCCTGAA
*
727 CCCTAAA
1 CCCTGAA
*
734 CCCTAAA
1 CCCTGAA
741 CCCT-AA
1 CCCTGAA
747 CCCT-AA
1 CCCTGAA
*
753 CCCTAAA
1 CCCTGAA
760 CCCTGAA
1 CCCTGAA
*
767 CCCTAAA
1 CCCTGAA
*
774 CCCTAAA
1 CCCTGAA
*
781 CCCTAAA
1 CCCTGAA
788 CCCT-AA
1 CCCTGAA
*
794 CCCTAAA
1 CCCTGAA
*
801 CCCTAAA
1 CCCTGAA
808 CCCT-AA
1 CCCTGAA
*
814 CCCTAAA
1 CCCTGAA
*
821 CCCTAAA
1 CCCTGAA
*
828 CCCTAAA
1 CCCTGAA
*
835 CCCTAAA
1 CCCTGAA
*
842 CCCTAAA
1 CCCTGAA
849 CCCT-AA
1 CCCTGAA
*
855 CCCTAAA
1 CCCTGAA
*
862 CCCTAAAA
1 CCCT-GAA
870 CCCT-AA
1 CCCTGAA
*
876 CCCTAAA
1 CCCTGAA
*
883 CCCTAAA
1 CCCTGAA
*
890 CCC-AAA
1 CCCTGAA
*
896 CCCTAAA
1 CCCTGAA
903 CCCT-AA
1 CCCTGAA
909 -CCTGAA
1 CCCTGAA
915 CCCT-AA
1 CCCTGAA
921 CCCT-AA
1 CCCTGAA
* *
927 ACCTAAA
1 CCCTGAA
934 CCCT-AA
1 CCCTGAA
*
940 CCCTAAA
1 CCCTGAA
*
947 CCC-AAA
1 CCCTGAA
*
953 CCCTAAA
1 CCCTGAA
*
960 CCCTAAA
1 CCCTGAA
967 CCCTGAA
1 CCCTGAA
974 CCCT-AA
1 CCCTGAA
*
980 CCCTAAA
1 CCCTGAA
*
987 CCCTAAA
1 CCCTGAA
*
994 CCCTAAA
1 CCCTGAA
1001 CCCT-AA
1 CCCTGAA
*
1007 CCCTAAA
1 CCCTGAA
*
1014 CCCTAAA
1 CCCTGAA
*
1021 CCCTAAA
1 CCCTGAA
*
1028 CCCTAAA
1 CCCTGAA
1035 CCCT-AA
1 CCCTGAA
1041 CCCT-AA
1 CCCTGAA
*
1047 -CCTAAA
1 CCCTGAA
*
1053 CCCTAAA
1 CCCTGAA
1060 CCCT-AA
1 CCCTGAA
*
1066 CCCTAAA
1 CCCTGAA
1073 CCCT-AA
1 CCCTGAA
*
1079 CCCTAAA
1 CCCTGAA
*
1086 CCCTAAA
1 CCCTGAA
1093 CCCT-AA
1 CCCTGAA
*
1099 CCCTAAA
1 CCCTGAA
1106 CCC--AA
1 CCCTGAA
*
1111 CCCTAAA
1 CCCTGAA
1118 CCCT-AA
1 CCCTGAA
*
1124 CCCTAAA
1 CCCTGAA
1131 CCCT-AA
1 CCCTGAA
1137 CCC--AA
1 CCCTGAA
* *
1142 ACCTAAA
1 CCCTGAA
1149 CCCT-AA
1 CCCTGAA
*
1155 CCCTAAA
1 CCCTGAA
1162 CCCT-AA
1 CCCTGAA
*
1168 CCCTAAA
1 CCCTGAA
*
1175 CCCTAAA
1 CCCTGAA
*
1182 CCCTAAA
1 CCCTGAA
*
1189 CCCTAAA
1 CCCTGAA
*
1196 CCCTAAA
1 CCCTGAA
*
1203 CCCT-AC
1 CCCTGAA
1209 CCCT-AA
1 CCCTGAA
*
1215 CCCTAAA
1 CCCTGAA
*
1222 CCCTAAA
1 CCCTGAA
*
1229 CCCCTAAA
1 -CCCTGAA
*
1237 CCCTAAA
1 CCCTGAA
*
1244 CCCTAAA
1 CCCTGAA
1251 CCCT-AA
1 CCCTGAA
*
1257 ACCT-AA
1 CCCTGAA
1263 CCCT-AA
1 CCCTGAA
*
1269 CCCCTAAA
1 -CCCTGAA
*
1277 CCCTAAA
1 CCCTGAA
*
1284 CCCTAAA
1 CCCTGAA
1291 CCCT-AA
1 CCCTGAA
1297 -CCT-AA
1 CCCTGAA
1302 CCCT-AA
1 CCCTGAA
*
1308 CCCTAAA
1 CCCTGAA
1315 CCCT-AA
1 CCCTGAA
*
1321 CCCTAAA
1 CCCTGAA
*
1328 CCCTAAA
1 CCCTGAA
*
1335 CCCTAAA
1 CCCTGAA
1342 CCCT-AA
1 CCCTGAA
1348 CCCT-AA
1 CCCTGAA
*
1354 ACCT-AA
1 CCCTGAA
1360 -CCT-AA
1 CCCTGAA
* *
1365 ACCTAAA
1 CCCTGAA
1372 CCCTGAA
1 CCCTGAA
*
1379 CCCTAAA
1 CCCTGAA
*
1386 CCCTAAA
1 CCCTGAA
*
1393 CCCTAAA
1 CCCTGAA
1400 CCCTGAA
1 CCCTGAA
1407 CCCT-AA
1 CCCTGAA
1413 CCCT-AA
1 CCCTGAA
*
1419 CCCTAAA
1 CCCTGAA
*
1426 CCCTAAAA
1 CCCT-GAA
*
1434 CCCTAAA
1 CCCTGAA
*
1441 CCCTAAA
1 CCCTGAA
1448 CCCTGAA
1 CCCTGAA
*
1455 CCCTTAA
1 CCCTGAA
*
1462 CCCTAAA
1 CCCTGAA
1469 CCCT-AA
1 CCCTGAA
1475 CCCT-AA
1 CCCTGAA
1481 CCCT-AA
1 CCCTGAA
*
1487 CCCCTAAA
1 -CCCTGAA
*
1495 CCCTAAA
1 CCCTGAA
1502 CCC--AA
1 CCCTGAA
1507 CCCT-AA
1 CCCTGAA
*
1513 ACCT-AA
1 CCCTGAA
1519 -CCT-AA
1 CCCTGAA
1524 CCCT-AA
1 CCCTGAA
1530 CCCT-AA
1 CCCTGAA
*
1536 CCCTAAA
1 CCCTGAA
*
1543 CCCTAAA
1 CCCTGAA
1550 CCC--AA
1 CCCTGAA
*
1555 CCCTAAA
1 CCCTGAA
*
1562 CCCTAAA
1 CCCTGAA
*
1569 CCCTAAA
1 CCCTGAA
*
1576 CCCTAAA
1 CCCTGAA
1583 CCCT-AA
1 CCCTGAA
*
1589 CCCTAAA
1 CCCTGAA
*
1596 CCCTAAA
1 CCCTGAA
1603 CCCT-AA
1 CCCTGAA
*
1609 CCCTAAA
1 CCCTGAA
1616 CCC-GAA
1 CCCTGAA
1622 CCCTGAA
1 CCCTGAA
*
1629 CCCTAAA
1 CCCTGAA
1636 CCCTGAA
1 CCCTGAA
**
1643 CCCAAAA
1 CCCTGAA
*
1650 CCCTAAA
1 CCCTGAA
1657 CCCT-AA
1 CCCTGAA
*
1663 CCCTAAA
1 CCCTGAA
*
1670 CCCTAAA
1 CCCTGAA
1677 CCCT-AA
1 CCCTGAA
*
1683 ACCT-AA
1 CCCTGAA
*
1689 CCCTAAA
1 CCCTGAA
*
1696 CCCTAAA
1 CCCTGAA
*
1703 CCCTAAA
1 CCCTGAA
*
1710 CCCTAAA
1 CCCTGAA
1717 CCCT-AA
1 CCCTGAA
1723 CCCTGAA
1 CCCTGAA
*
1730 CCCTAAA
1 CCCTGAA
1737 CCCTGAA
1 CCCTGAA
*
1744 CCCTAAA
1 CCCTGAA
*
1751 CCCTAAA
1 CCCTGAA
1758 CCCTGAA
1 CCCTGAA
*
1765 CCCTAAA
1 CCCTGAA
1772 CCCT-AA
1 CCCTGAA
*
1778 CCCTAAA
1 CCCTGAA
*
1785 CCCTAAA
1 CCCTGAA
*
1792 CCCTAAA
1 CCCTGAA
*
1799 CCCTAAA
1 CCCTGAA
*
1806 CCCTAAA
1 CCCTGAA
1813 CCCT-AA
1 CCCTGAA
* *
1819 ACCTAAA
1 CCCTGAA
1826 CCCT-AA
1 CCCTGAA
*
1832 CCCTAAA
1 CCCTGAA
*
1839 CCCTAAA
1 CCCTGAA
*
1846 CCCTAAA
1 CCCTGAA
*
1853 CCCTAAA
1 CCCTGAA
1860 CCCT-AA
1 CCCTGAA
*
1866 CCCTAAA
1 CCCTGAA
*
1873 CCCTAAA
1 CCCTGAA
*
1880 CCCTAAA
1 CCCTGAA
1887 CCCT-AA
1 CCCTGAA
1893 CCCT-AA
1 CCCTGAA
*
1899 CCCTAAA
1 CCCTGAA
*
1906 CCCTAAA
1 CCCTGAA
*
1913 CCCTAAA
1 CCCTGAA
1920 CCCTGAA
1 CCCTGAA
1927 CCCT-AA
1 CCCTGAA
*
1933 ACCT-AA
1 CCCTGAA
1939 CCCT-AA
1 CCCTGAA
1945 CCCT-AA
1 CCCTGAA
* *
1951 ACCTAAA
1 CCCTGAA
*
1958 CCCTAAA
1 CCCTGAA
*
1965 CCCTAAA
1 CCCTGAA
1972 CCC--AA
1 CCCTGAA
*
1977 ACCTGAA
1 CCCTGAA
1984 CCC--AA
1 CCCTGAA
1989 CCCT-AA
1 CCCTGAA
*
1995 CCCTAAA
1 CCCTGAA
2002 CCCTGAA
1 CCCTGAA
2009 CCCTGAA
1 CCCTGAA
*
2016 CCCTAAA
1 CCCTGAA
*
2023 CCCTAAA
1 CCCTGAA
*
2030 CCCTAAA
1 CCCTGAA
*
2037 CCCTAAA
1 CCCTGAA
2044 CCCTGAA
1 CCCTGAA
*
2051 CCCTAAA
1 CCCTGAA
2058 CCC--AA
1 CCCTGAA
*
2063 -CCTAAA
1 CCCTGAA
2069 CCCT-AA
1 CCCTGAA
* *
2075 ACCTAAA
1 CCCTGAA
2082 CCCT-AA
1 CCCTGAA
* *
2088 ACCTAAA
1 CCCTGAA
2095 CCCTGAA
1 CCCTGAA
*
2102 CCCTAAA
1 CCCTGAA
2109 CCCTGAA
1 CCCTGAA
2116 CCCT-AA
1 CCCTGAA
* *
2122 ACCTAAA
1 CCCTGAA
2129 CCCT-AA
1 CCCTGAA
*
2135 CCCTAAACAA
1 CCCT---GAA
*
2145 CCCTAAA
1 CCCTGAA
*
2152 CCCTAAA
1 CCCTGAA
2159 CCCT-AA
1 CCCTGAA
*
2165 CCCTAAA
1 CCCTGAA
*
2172 CCCTAAA
1 CCCTGAA
2179 CCCT-AA
1 CCCTGAA
*
2185 ACC-GAA
1 CCCTGAA
2191 CCCT-AA
1 CCCTGAA
*
2197 CCCTAAA
1 CCCTGAA
2204 CCCTGAA
1 CCCTGAA
2211 CCCT-AA
1 CCCTGAA
*
2217 CCCTAAA
1 CCCTGAA
*
2224 CCCTAAA
1 CCCTGAA
2231 CCCTGAA
1 CCCTGAA
2238 CCCTGAA
1 CCCTGAA
2245 CCCT-AA
1 CCCTGAA
*
2251 CCCTAAA
1 CCCTGAA
2258 CCCT-AA
1 CCCTGAA
*
2264 CCC-AAA
1 CCCTGAA
2270 CCCT-AA
1 CCCTGAA
*
2276 CCCTAAA
1 CCCTGAA
*
2283 CCCTAAA
1 CCCTGAA
*
2290 CCCTAAA
1 CCCTGAA
*
2297 CCCTAAA
1 CCCTGAA
2304 CCCT-AA
1 CCCTGAA
*
2310 CCCTAAA
1 CCCTGAA
*
2317 CCCTAAA
1 CCCTGAA
2324 CCCT-AA
1 CCCTGAA
*
2330 CCCTAAA
1 CCCTGAA
2337 CCCT-AA
1 CCCTGAA
2343 CCCT-AA
1 CCCTGAA
*
2349 -CCTAAA
1 CCCTGAA
*
2355 CCCTAAA
1 CCCTGAA
*
2362 CCCTAAA
1 CCCTGAA
*
2369 CCCTAAA
1 CCCTGAA
2376 CCCTGAA
1 CCCTGAA
*
2383 CCCTAAA
1 CCCTGAA
*
2390 CCCTAAA
1 CCCTGAA
2397 CCCTGAA
1 CCCTGAA
*
2404 CCCTAAA
1 CCCTGAA
2411 CCCT-AA
1 CCCTGAA
2417 -CCTGAA
1 CCCTGAA
*
2423 CCCTAAA
1 CCCTGAA
2430 CCCT-AA
1 CCCTGAA
*
2436 ACCTGAA
1 CCCTGAA
*
2443 CCCTAAA
1 CCCTGAA
2450 CCCT-AA
1 CCCTGAA
*
2456 CCCTAAA
1 CCCTGAA
2463 CCCT-AA
1 CCCTGAA
*
2469 CCCTAAA
1 CCCTGAA
2476 CCCT-AA
1 CCCTGAA
2482 CCCT-AA
1 CCCTGAA
*
2488 CCCTAAA
1 CCCTGAA
*
2495 CCCTAAA
1 CCCTGAA
*
2502 CCCTAAA
1 CCCTGAA
2509 CCCT-AA
1 CCCTGAA
2515 CCCCCTGAA
1 --CCCTGAA
*
2524 CCCTAAA
1 CCCTGAA
*
2531 CCCTAAA
1 CCCTGAA
*
2538 CCCTAAA
1 CCCTGAA
2545 CCCT-AA
1 CCCTGAA
*
2551 CCCTAAA
1 CCCTGAA
*
2558 CCC-AAA
1 CCCTGAA
2564 CCCT-AA
1 CCCTGAA
2570 -CCTGAAA
1 CCCTG-AA
2577 CCCT-AA
1 CCCTGAA
2583 CCC--AA
1 CCCTGAA
*
2588 CCCTAAA
1 CCCTGAA
2595 CCCT-AA
1 CCCTGAA
*
2601 ACCT--A
1 CCCTGAA
*
2606 CCCTAAA
1 CCCTGAA
*
2613 CCCTAAA
1 CCCTGAA
*
2620 CCC-AAA
1 CCCTGAA
*
2626 CCCTAAA
1 CCCTGAA
*
2633 CCCTAAA
1 CCCTGAA
*
2640 CCC-AAA
1 CCCTGAA
*
2646 CCCTAAA
1 CCCTGAA
2653 CCC--AA
1 CCCTGAA
*
2658 CCCTAAA
1 CCCTGAA
*
2665 CCCTAAA
1 CCCTGAA
2672 CCCT-AA
1 CCCTGAA
*
2678 CCCTAAA
1 CCCTGAA
*
2685 CCCTAAA
1 CCCTGAA
2692 CCCT-AA
1 CCCTGAA
2698 CCCTGAA
1 CCCTGAA
*
2705 CCCTAAA
1 CCCTGAA
*
2712 CCCTAAA
1 CCCTGAA
*
2719 CCCTAAA
1 CCCTGAA
*
2726 CCC-AAA
1 CCCTGAA
2732 CCCT-AA
1 CCCTGAA
*
2738 ACCT-AA
1 CCCTGAA
*
2744 CCCTAAA
1 CCCTGAA
2751 CCCTGAA
1 CCCTGAA
2758 CCC--AA
1 CCCTGAA
*
2763 CCCTAAA
1 CCCTGAA
2770 CCCT-AA
1 CCCTGAA
*
2776 CCCTAAA
1 CCCTGAA
2783 CCCT-AA
1 CCCTGAA
*
2789 CCCTAAA
1 CCCTGAA
2796 CCCT-AA
1 CCCTGAA
*
2802 CCCTAAA
1 CCCTGAA
*
2809 CCCTAAA
1 CCCTGAA
*
2816 CCCTAAA
1 CCCTGAA
*
2823 CCCTAAA
1 CCCTGAA
*
2830 CCCTAAAA
1 CCCT-GAA
2838 CCCT-AA
1 CCCTGAA
2844 CCCTGAA
1 CCCTGAA
*
2851 CCCTAAA
1 CCCTGAA
*
2858 CCCTAAA
1 CCCTGAA
*
2865 CCCTAAA
1 CCCTGAA
*
2872 CCCTAAA
1 CCCTGAA
2879 CCCT-AA
1 CCCTGAA
*
2885 CCCTAAAA
1 CCCT-GAA
2893 CCCT-AA
1 CCCTGAA
*
2899 CCCTAAA
1 CCCTGAA
*
2906 CCCTAAA
1 CCCTGAA
*
2913 CCCTAAA
1 CCCTGAA
2920 CCCT-AA
1 CCCTGAA
*
2926 CCCTAAA
1 CCCTGAA
2933 CCCT-AA
1 CCCTGAA
* *
2939 ACCTAAA
1 CCCTGAA
*
2946 CCCTAAA
1 CCCTGAA
2953 CCCT-AA
1 CCCTGAA
2959 CCCT-AA
1 CCCTGAA
*
2965 CCCTAAA
1 CCCTGAA
2972 CCCTGAA
1 CCCTGAA
2979 CCCT-AA
1 CCCTGAA
*
2985 ACCT-AA
1 CCCTGAA
*
2991 CCCTAAA
1 CCCTGAA
*
2998 CCCTAAA
1 CCCTGAA
*
3005 CCCTAAA
1 CCCTGAA
*
3012 CCCTAAA
1 CCCTGAA
3019 CCCT-AA
1 CCCTGAA
* *
3025 ACCTAAA
1 CCCTGAA
3032 CCCT-AA
1 CCCTGAA
*
3038 ACCTGAA
1 CCCTGAA
*
3045 CCCTAAA
1 CCCTGAA
3052 CCCTGAA
1 CCCTGAA
*
3059 CCCTAAAA
1 CCCT-GAA
3067 CCC-GAAA
1 CCCTG-AA
3074 CCCT-AA
1 CCCTGAA
3080 CCCTGAA
1 CCCTGAA
*
3087 CCCTAAA
1 CCCTGAA
*
3094 CCCTAAA
1 CCCTGAA
3101 CCCT-AA
1 CCCTGAA
*
3107 ACCTGAA
1 CCCTGAA
3114 CCCTGAA
1 CCCTGAA
3121 CCCTGAA
1 CCCTGAA
*
3128 CCCTAAA
1 CCCTGAA
3135 CCCT-AA
1 CCCTGAA
*
3141 -CCTAAA
1 CCCTGAA
3147 CCCT-AA
1 CCCTGAA
3153 CCCT-AA
1 CCCTGAA
*
3159 CCCTAAA
1 CCCTGAA
3166 CCCTGAA
1 CCCTGAA
3173 CCCTGAA
1 CCCTGAA
*
3180 CCCTAAA
1 CCCTGAA
*
3187 CCCTCAA
1 CCCTGAA
3194 CCCT-AA
1 CCCTGAA
3200 -CC--AA
1 CCCTGAA
3204 CCCT-AA
1 CCCTGAA
*
3210 -CCTAAA
1 CCCTGAA
*
3216 CCCTAAA
1 CCCTGAA
3223 CCC--AA
1 CCCTGAA
3228 CCCT-AA
1 CCCTGAA
*
3234 CCCTAAA
1 CCCTGAA
*
3241 CCCTAAA
1 CCCTGAA
3248 CCCT-AA
1 CCCTGAA
*
3254 CCCTAAA
1 CCCTGAA
3261 CCCT-AA
1 CCCTGAA
*
3267 CCCTAAA
1 CCCTGAA
3274 CCCT-AA
1 CCCTGAA
*
3280 CCCTAAA
1 CCCTGAA
*
3287 CCCTAAA
1 CCCTGAA
3294 CCCTGAA
1 CCCTGAA
*
3301 CCCTAAA
1 CCCTGAA
3308 CCCTGAA
1 CCCTGAA
3315 CCCTGAA
1 CCCTGAA
*
3322 CCCTAAA
1 CCCTGAA
3329 CCCT-AA
1 CCCTGAA
*
3335 ACCTGAA
1 CCCTGAA
*
3342 CCCTAAA
1 CCCTGAA
*
3349 CCCTAAA
1 CCCTGAA
*
3356 CCC-AAA
1 CCCTGAA
*
3362 CCCTAAA
1 CCCTGAA
*
3369 CCCTAAA
1 CCCTGAA
*
3376 CCCTAAA
1 CCCTGAA
3383 CCCT-AA
1 CCCTGAA
3389 CCCT-AA
1 CCCTGAA
*
3395 CCC-AAA
1 CCCTGAA
3401 CCCTGAA
1 CCCTGAA
*
3408 CCCTAAA
1 CCCTGAA
3415 CCCT-AA
1 CCCTGAA
3421 CCC--AA
1 CCCTGAA
3426 CCCT-AA
1 CCCTGAA
3432 CCCT-AA
1 CCCTGAA
*
3438 CCCTAAA
1 CCCTGAA
*
3445 CCCTCTAAA
1 -CC-CTGAA
3454 CCC-GAAA
1 CCCTG-AA
3461 CCCT-AA
1 CCCTGAA
* *
3467 ACCTAAA
1 CCCTGAA
*
3474 CCCTAAA
1 CCCTGAA
*
3481 CCCTAAA
1 CCCTGAA
*
3488 CCCTAAA
1 CCCTGAA
3495 CCC-GAA
1 CCCTGAA
*
3501 CCCTAAA
1 CCCTGAA
*
3508 CCCTAAA
1 CCCTGAA
*
3515 CCCTAAA
1 CCCTGAA
*
3522 CCCTAAA
1 CCCTGAA
3529 CCCT-AA
1 CCCTGAA
*
3535 CCCTAAA
1 CCCTGAA
*
3542 CCCTAAA
1 CCCTGAA
*
3549 CCCTAAA
1 CCCTGAA
3556 CCCT-AA
1 CCCTGAA
*
3562 CCCTAAA
1 CCCTGAA
*
3569 CCCTAAA
1 CCCTGAA
*
3576 CCCTAAA
1 CCCTGAA
3583 CCCT-AA
1 CCCTGAA
3589 CCC-GAA
1 CCCTGAA
*
3595 CCCTAAAA
1 CCCT-GAA
3603 CCCT-AA
1 CCCTGAA
*
3609 -CCTAAA
1 CCCTGAA
*
3615 CCCTAAA
1 CCCTGAA
*
3622 CCC-AAA
1 CCCTGAA
*
3628 CCCTAAA
1 CCCTGAA
*
3635 CCCTAAA
1 CCCTGAA
3642 CCCT-AA
1 CCCTGAA
3648 CCCT-AA
1 CCCTGAA
* *
3654 ACCTAAA
1 CCCTGAA
*
3661 CCCTAAA
1 CCCTGAA
*
3668 CCCTAAA
1 CCCTGAA
3675 CCCT-AA
1 CCCTGAA
*
3681 CCCTAAA
1 CCCTGAA
*
3688 CCCTAAA
1 CCCTGAA
*
3695 CCCTAAA
1 CCCTGAA
*
3702 CCCTAAA
1 CCCTGAA
3709 CCC-GAAA
1 CCCTG-AA
*
3716 CCCTAAA
1 CCCTGAA
*
3723 CCCTAAA
1 CCCTGAA
*
3730 CCCTAAA
1 CCCTGAA
*
3737 CCCTAAA
1 CCCTGAA
3744 CCCT-AA
1 CCCTGAA
3750 CCCT-AA
1 CCCTGAA
*
3756 CCCTAAA
1 CCCTGAA
3763 CCCT-AA
1 CCCTGAA
* *
3769 ACCTAAA
1 CCCTGAA
*
3776 CCCTAAA
1 CCCTGAA
3783 CCCTGAA
1 CCCTGAA
*
3790 CCCTAAA
1 CCCTGAA
3797 CCCT-AA
1 CCCTGAA
3803 CCCTGAA
1 CCCTGAA
*
3810 CCC-AAA
1 CCCTGAA
3816 CCCTGAA
1 CCCTGAA
*
3823 CCCTAAA
1 CCCTGAA
*
3830 CCCTAAA
1 CCCTGAA
3837 CCC-GAA
1 CCCTGAA
*
3843 CCCTAAA
1 CCCTGAA
3850 CCCT-AA
1 CCCTGAA
*
3856 CCCTAAA
1 CCCTGAA
3863 CCCT-AA
1 CCCTGAA
3869 CCCT-AA
1 CCCTGAA
3875 CCCTGAA
1 CCCTGAA
*
3882 CCCTAAA
1 CCCTGAA
*
3889 CCCTAAA
1 CCCTGAA
*
3896 CCCTAAA
1 CCCTGAA
3903 CCCTGAA
1 CCCTGAA
3910 CCC---A
1 CCCTGAA
*
3914 CCCTAAA
1 CCCTGAA
*
3921 CCCTAAA
1 CCCTGAA
3928 CCCT-AA
1 CCCTGAA
3934 CCCTGAA
1 CCCTGAA
*
3941 CCCTAAA
1 CCCTGAA
*
3948 CCCTAAA
1 CCCTGAA
*
3955 CCCTAAA
1 CCCTGAA
3962 CCCT-AA
1 CCCTGAA
3968 CCCT-AA
1 CCCTGAA
*
3974 CCC-AAA
1 CCCTGAA
*
3980 CCCTAAA
1 CCCTGAA
3987 CCCT-AA
1 CCCTGAA
*
3993 ACCT-AA
1 CCCTGAA
3999 CCC-GAAA
1 CCCTG-AA
*
4006 CCCTAAA
1 CCCTGAA
*
4013 CCCTAAA
1 CCCTGAA
*
4020 CCCTAAA
1 CCCTGAA
4027 CCCT-AA
1 CCCTGAA
*
4033 -CCTAAA
1 CCCTGAA
4039 CCCTGAA
1 CCCTGAA
*
4046 -CCTAAA
1 CCCTGAA
4052 CCCT-AA
1 CCCTGAA
4058 CCCTGAA
1 CCCTGAA
4065 CCCTGAA
1 CCCTGAA
*
4072 CCCTAAA
1 CCCTGAA
*
4079 CCCTAAA
1 CCCTGAA
4086 CCCTGAA
1 CCCTGAA
4093 -CCTGAA
1 CCCTGAA
*
4099 CCCTAAA
1 CCCTGAA
*
4106 CCCTAAA
1 CCCTGAA
*
4113 CCCTAAA
1 CCCTGAA
*
4120 CCCTAAA
1 CCCTGAA
*
4127 CCCTAAA
1 CCCTGAA
*
4134 CCCTAAA
1 CCCTGAA
4141 CCCT-AA
1 CCCTGAA
* *
4147 ACCTAAA
1 CCCTGAA
*
4154 CCCTAAA
1 CCCTGAA
4161 CCCT-AA
1 CCCTGAA
4167 CCCTGAA
1 CCCTGAA
4174 CCCT-AA
1 CCCTGAA
*
4180 CCCCTAAA
1 -CCCTGAA
4188 CCCTGAA
1 CCCTGAA
4195 CCC-GAAA
1 CCCTG-AA
*
4202 CCCTAAA
1 CCCTGAA
4209 CCCT-AA
1 CCCTGAA
* *
4215 ACCTAAA
1 CCCTGAA
*
4222 CCCTAAA
1 CCCTGAA
4229 CCCTGAA
1 CCCTGAA
*
4236 CCCTAAA
1 CCCTGAA
4243 CCCTGAA
1 CCCTGAA
*
4250 CCCTAAA
1 CCCTGAA
*
4257 CCCTAAA
1 CCCTGAA
4264 CCCTGAA
1 CCCTGAA
*
4271 CCCTAAA
1 CCCTGAA
4278 CCCTGAA
1 CCCTGAA
4285 CCCT-AA
1 CCCTGAA
4291 CCCTGAA
1 CCCTGAA
*
4298 CCCTAAA
1 CCCTGAA
4305 CCCTGAA
1 CCCTGAA
4312 --CT-AA
1 CCCTGAA
*
4316 CCCTAAA
1 CCCTGAA
4323 CCC-GAA
1 CCCTGAA
*
4329 CCCTAAA
1 CCCTGAA
4336 CCCT-AA
1 CCCTGAA
4342 CCCTGAA
1 CCCTGAA
*
4349 CCCTAAA
1 CCCTGAA
*
4356 CCCTAAA
1 CCCTGAA
4363 CCCT-AA
1 CCCTGAA
*
4369 CCCTAAA
1 CCCTGAA
*
4376 CCCTAAA
1 CCCTGAA
*
4383 CCCTAAA
1 CCCTGAA
*
4390 CCC-AAA
1 CCCTGAA
4396 CCCTGAA
1 CCCTGAA
*
4403 CCCTAAA
1 CCCTGAA
*
4410 CCCTAAA
1 CCCTGAA
*
4417 CCCTAAA
1 CCCTGAA
*
4424 CCCTAAA
1 CCCTGAA
4431 CCCT-AA
1 CCCTGAA
*
4437 CCCTAAA
1 CCCTGAA
4444 CCCT-AA
1 CCCTGAA
4450 CCCTGAA
1 CCCTGAA
*
4457 CCCTAAA
1 CCCTGAA
4464 CCC--AA
1 CCCTGAA
4469 CCCT-AA
1 CCCTGAA
* *
4475 ACCTAAA
1 CCCTGAA
4482 CCCT--A
1 CCCTGAA
4487 -CCT-AA
1 CCCTGAA
*
4492 CCCTAAA
1 CCCTGAA
*
4499 CCCTAAA
1 CCCTGAA
*
4506 CCCTAAA
1 CCCTGAA
*
4513 CCCTAAA
1 CCCTGAA
4520 CCCT-AA
1 CCCTGAA
* *
4526 ACCTAAA
1 CCCTGAA
4533 CCCT-AA
1 CCCTGAA
*
4539 CCCTAAA
1 CCCTGAA
*
4546 CCCTAAA
1 CCCTGAA
4553 CCCTGAA
1 CCCTGAA
*
4560 CCCTAAA
1 CCCTGAA
*
4567 CCCTAAA
1 CCCTGAA
*
4574 CCCTAAA
1 CCCTGAA
*
4581 CCCTAAA
1 CCCTGAA
4588 CCCTGAA
1 CCCTGAA
4595 CCCTGAA
1 CCCTGAA
4602 CCCCT-AA
1 -CCCTGAA
*
4609 CCCTAAA
1 CCCTGAA
4616 CCCTGAA
1 CCCTGAA
4623 -CCT-AA
1 CCCTGAA
*
4628 CCCTAAA
1 CCCTGAA
4635 CCCT-AA
1 CCCTGAA
*
4641 ACCT-AA
1 CCCTGAA
*
4647 -CCTAAA
1 CCCTGAA
*
4653 CCCTAAA
1 CCCTGAA
*
4660 CCCTAAA
1 CCCTGAA
*
4667 CCCTAAA
1 CCCTGAA
*
4674 CCCTAAA
1 CCCTGAA
4681 CCCTGAA
1 CCCTGAA
*
4688 CCCTAAA
1 CCCTGAA
4695 CCCTGAAA
1 CCCTG-AA
4703 CCCTGAAA
1 CCCTG-AA
*
4711 CCCTAAA
1 CCCTGAA
*
4718 CCCTAAA
1 CCCTGAA
*
4725 CCCTAAA
1 CCCTGAA
4732 CCCT-AA
1 CCCTGAA
*
4738 CCCTAAA
1 CCCTGAA
*
4745 CCCTAAA
1 CCCTGAA
*
4752 CCCTAAA
1 CCCTGAA
*
4759 CCCTAAA
1 CCCTGAA
*
4766 CCCTAAA
1 CCCTGAA
*
4773 CCCTAAA
1 CCCTGAA
*
4780 CCCTAAA
1 CCCTGAA
*
4787 CCCTAAA
1 CCCTGAA
4794 CCCT-AA
1 CCCTGAA
*
4800 CCCTAAA
1 CCCTGAA
*
4807 CCCTAAA
1 CCCTGAA
4814 CCCT-AA
1 CCCTGAA
*
4820 ACCTGAA
1 CCCTGAA
4827 CCCT-AA
1 CCCTGAA
4833 CCCT-AA
1 CCCTGAA
4839 CCCT-AA
1 CCCTGAA
4845 CCCTGAA
1 CCCTGAA
*
4852 CCCTAAA
1 CCCTGAA
4859 CCCTGAA
1 CCCTGAA
4866 -CCTGAA
1 CCCTGAA
*
4872 CCCTAAA
1 CCCTGAA
4879 CCCTGAAAA
1 CCCTG--AA
* *
4888 ACCTAAA
1 CCCTGAA
4895 CCCTGAA
1 CCCTGAA
4902 CCCTGAAA
1 CCCTG-AA
*
4910 CCCTAAA
1 CCCTGAA
4917 CCCT-AA
1 CCCTGAA
4923 CCCTGAA
1 CCCTGAA
4930 CCCT-AA
1 CCCTGAA
4936 CCCTGAA
1 CCCTGAA
4943 -CCTGAA
1 CCCTGAA
4949 CCCTGAA
1 CCCTGAA
4956 CCCTGAA
1 CCCTGAA
4963 CCCT-AA
1 CCCTGAA
4969 CCCTGAA
1 CCCTGAA
4976 CCCTGAA
1 CCCTGAA
4983 CCCTGAA
1 CCCTGAA
4990 CCCTGAA
1 CCCTGAA
4997 CCCTGAA
1 CCCTGAA
5004 CCCTGAA
1 CCCTGAA
5011 CCCTGAA
1 CCCTGAA
5018 CCCTGAA
1 CCCTGAA
5025 CCCTGAA
1 CCCTGAA
5032 CCCTGAA
1 CCCTGAA
5039 CCCTGAA
1 CCCTGAA
5046 CCCTGAA
1 CCCTGAA
5053 CCCT-AA
1 CCCTGAA
5059 -CCTGAA
1 CCCTGAA
5065 CCCTGAA
1 CCCTGAA
5072 CCCTGAA
1 CCCTGAA
5079 CCCTGAA
1 CCCTGAA
*
5086 CCCTAAA
1 CCCTGAA
5093 CCCTGAA
1 CCCTGAA
5100 -CCTGAA
1 CCCTGAA
5106 CCCTGAA
1 CCCTGAA
5113 CCCTGAA
1 CCCTGAA
5120 CCCTGAA
1 CCCTGAA
5127 CCCTGAA
1 CCCTGAA
5134 CCCTGAA
1 CCCTGAA
5141 CCCTGAA
1 CCCTGAA
5148 CCCTGAA
1 CCCTGAA
5155 CCCTGAA
1 CCCTGAA
5162 CCCTGAA
1 CCCTGAA
5169 CCCTGAA
1 CCCTGAA
5176 CCCT-AA
1 CCCTGAA
5182 CCCTGAA
1 CCCTGAA
5189 CCCTGAA
1 CCCTGAA
5196 CCCTGAA
1 CCCTGAA
5203 CCCTGAA
1 CCCTGAA
5210 CCCTGAA
1 CCCTGAA
5217 CCCTGAA
1 CCCTGAA
5224 CCCTGAA
1 CCCTGAA
5231 CCCTGAA
1 CCCTGAA
5238 CCCTGAA
1 CCCTGAA
5245 CCCTGAA
1 CCCTGAA
5252 CCCTGAA
1 CCCTGAA
5259 CCCTGAA
1 CCCTGAA
5266 CCCTGAA
1 CCCTGAA
5273 CCCTGAA
1 CCCTGAA
5280 CCCTGAA
1 CCCTGAA
5287 CCCTGAA
1 CCCTGAA
5294 CCCTGAA
1 CCCTGAA
5301 CCCTGAA
1 CCCTGAA
5308 CCCTGAA
1 CCCTGAA
5315 CCCTGAA
1 CCCTGAA
5322 CCCTGAA
1 CCCTGAA
5329 CCCTGAA
1 CCCTGAA
5336 CCCTGAA
1 CCCTGAA
5343 CCCTGAA
1 CCCTGAA
5350 CCCTGAA
1 CCCTGAA
5357 CCCTGAA
1 CCCTGAA
5364 CCCTGAA
1 CCCTGAA
5371 CCCTGAA
1 CCCTGAA
5378 CCCTGAA
1 CCCTGAA
5385 CCCTGAA
1 CCCTGAA
5392 CCCTGAA
1 CCCTGAA
5399 CCCTGAA
1 CCCTGAA
5406 CCCTGAA
1 CCCTGAA
5413 CCCTGAA
1 CCCTGAA
5420 CCCTGAA
1 CCCTGAA
5427 CCCTGAA
1 CCCTGAA
5434 CCCTGAA
1 CCCTGAA
5441 CCCTGAA
1 CCCTGAA
5448 CCCTGAA
1 CCCTGAA
5455 CCCTGAA
1 CCCTGAA
5462 CCCTGAA
1 CCCTGAA
5469 CCCTGAA
1 CCCTGAA
5476 CCCTGAA
1 CCCTGAA
5483 CCCTGAA
1 CCCTGAA
5490 CCCTGAA
1 CCCTGAA
5497 CCCTGAA
1 CCCTGAA
5504 CCCTGAA
1 CCCTGAA
5511 CCCTGAA
1 CCCTGAA
5518 CCCTGAA
1 CCCTGAA
5525 CCCTGAA
1 CCCTGAA
5532 CCCTGAA
1 CCCTGAA
5539 CCCTGAA
1 CCCTGAA
5546 CCCTGAA
1 CCCTGAA
5553 CCCTGAA
1 CCCTGAA
5560 CCCTGAA
1 CCCTGAA
5567 CCCTGAA
1 CCCTGAA
5574 CCCTGAA
1 CCCTGAA
5581 CCCTGAA
1 CCCTGAA
5588 CCCTGAA
1 CCCTGAA
5595 CCCTGAA
1 CCCTGAA
5602 CCCTGAA
1 CCCTGAA
5609 CCCTGAA
1 CCCTGAA
5616 CCCTGAA
1 CCCTGAA
5623 CCCTGAA
1 CCCTGAA
5630 CCCTGAA
1 CCCTGAA
5637 CCCTGAA
1 CCCTGAA
5644 CCCTGAA
1 CCCTGAA
5651 CCCTGAA
1 CCCTGAA
5658 CCCTGAA
1 CCCTGAA
5665 CCCTGAA
1 CCCTGAA
5672 CCCTGAA
1 CCCTGAA
5679 CCCTGAA
1 CCCTGAA
5686 CCCTGAA
1 CCCTGAA
5693 CCCTGAA
1 CCCTGAA
5700 CCCTGAA
1 CCCTGAA
5707 CCCTGAA
1 CCCTGAA
5714 CCCTGAA
1 CCCTGAA
5721 CCCTGAA
1 CCCTGAA
5728 CCCTGAA
1 CCCTGAA
5735 CCCTGAA
1 CCCTGAA
5742 CCCTGAA
1 CCCTGAA
5749 CCCTGAA
1 CCCTGAA
5756 CCCTGAA
1 CCCTGAA
5763 CCCTGAA
1 CCCTGAA
5770 CCCTGAA
1 CCCTGAA
5777 CCCTGAA
1 CCCTGAA
5784 CCCTGAA
1 CCCTGAA
5791 CCCTGAA
1 CCCTGAA
5798 CCCTGAA
1 CCCTGAA
5805 CCCTGAA
1 CCCTGAA
5812 CCCTGAA
1 CCCTGAA
5819 CCCTGAA
1 CCCTGAA
5826 CCCTGAA
1 CCCTGAA
5833 -CCTGAA
1 CCCTGAA
5839 CCCTGAA
1 CCCTGAA
5846 CCCTGAA
1 CCCTGAA
5853 CCCTGAA
1 CCCTGAA
5860 CCCTGAA
1 CCCTGAA
5867 CCCTGAA
1 CCCTGAA
5874 CCCTGAA
1 CCCTGAA
5881 CCCTGAA
1 CCCTGAA
5888 CCCTGAA
1 CCCTGAA
5895 CCCTGAA
1 CCCTGAA
5902 CCCTGAA
1 CCCTGAA
5909 CCCTGAA
1 CCCTGAA
5916 CCCTGAA
1 CCCTGAA
5923 CCCTGAA
1 CCCTGAA
5930 CCCTGAA
1 CCCTGAA
5937 CCCTGAA
1 CCCTGAA
5944 CCCTGAA
1 CCCTGAA
5951 CCCTGAA
1 CCCTGAA
5958 CCCTGAA
1 CCCTGAA
5965 CCCTGAA
1 CCCTGAA
5972 CCCTGAA
1 CCCTGAA
5979 CCCTGAA
1 CCCTGAA
5986 CCCTGAA
1 CCCTGAA
5993 CCCTGAA
1 CCCTGAA
6000 -CCTGAA
1 CCCTGAA
6006 CCCTGAA
1 CCCTGAA
6013 CCCTGAA
1 CCCTGAA
6020 CCCTGAA
1 CCCTGAA
6027 CCCTGAA
1 CCCTGAA
6034 CCCTGAA
1 CCCTGAA
6041 CCCTGAA
1 CCCTGAA
6048 CCCTGAA
1 CCCTGAA
6055 CCCTGAA
1 CCCTGAA
6062 CCCTGAA
1 CCCTGAA
6069 CCCTGAA
1 CCCTGAA
6076 CCCTG-A
1 CCCTGAA
6082 CCCTGAA
1 CCCTGAA
6089 CCCTGAA
1 CCCTGAA
6096 CCCTGAA
1 CCCTGAA
6103 CCCTGAA
1 CCCTGAA
6110 CCCTGAA
1 CCCTGAA
6117 CCCTGAA
1 CCCTGAA
6124 CCCTGAA
1 CCCTGAA
6131 CCCTGAA
1 CCCTGAA
6138 CCCTGAA
1 CCCTGAA
6145 CCCTGAA
1 CCCTGAA
6152 CCCTGAA
1 CCCTGAA
6159 CCCTGAA
1 CCCTGAA
6166 CCCTGAA
1 CCCTGAA
6173 CCCTGAA
1 CCCTGAA
6180 CCCTGAA
1 CCCTGAA
6187 CCCTGAA
1 CCCTGAA
6194 CCCTGAA
1 CCCTGAA
6201 CCCTGAA
1 CCCTGAA
6208 CCCTGAA
1 CCCTGAA
6215 CCCTGAA
1 CCCTGAA
6222 CCCTGAA
1 CCCTGAA
6229 CCCTGAA
1 CCCTGAA
6236 CCCTGAA
1 CCCTGAA
6243 CCCTGAA
1 CCCTGAA
6250 CCCTGAA
1 CCCTGAA
6257 CCCTGAA
1 CCCTGAA
6264 CCCTGAA
1 CCCTGAA
6271 CCCTGAA
1 CCCTGAA
6278 CCCTGAA
1 CCCTGAA
6285 CCCTGAA
1 CCCTGAA
6292 CCCTGAA
1 CCCTGAA
6299 CCCTGAA
1 CCCTGAA
6306 CCCTGAA
1 CCCTGAA
6313 CCCTGAA
1 CCCTGAA
6320 CCCTGAA
1 CCCTGAA
6327 CCCTGAA
1 CCCTGAA
6334 CCCTGAA
1 CCCTGAA
6341 CCCTGAA
1 CCCTGAA
6348 CCCTGAA
1 CCCTGAA
6355 CCCTGAA
1 CCCTGAA
6362 CCCTGAA
1 CCCTGAA
6369 CCCTGAA
1 CCCTGAA
6376 CCCTGAA
1 CCCTGAA
6383 CCCTGAA
1 CCCTGAA
6390 CCCTGAA
1 CCCTGAA
6397 CCCTGAA
1 CCCTGAA
6404 CCCTGAA
1 CCCTGAA
6411 CCCTGAA
1 CCCTGAA
6418 CCCTGAA
1 CCCTGAA
6425 CCCTGAA
1 CCCTGAA
6432 CCCTGAA
1 CCCTGAA
6439 CCCTGAA
1 CCCTGAA
6446 CCCTGAA
1 CCCTGAA
6453 CCCTGAA
1 CCCTGAA
6460 CCCTGAA
1 CCCTGAA
6467 CCCTGAA
1 CCCTGAA
6474 CCCTGAA
1 CCCTGAA
6481 CCCTGAA
1 CCCTGAA
6488 CCCTGAA
1 CCCTGAA
6495 CCCTGAA
1 CCCTGAA
6502 CCCTGAA
1 CCCTGAA
6509 CCCTGAA
1 CCCTGAA
6516 CCCTGAA
1 CCCTGAA
6523 CCCTGAA
1 CCCTGAA
6530 CCCTGAA
1 CCCTGAA
6537 CCCTGAA
1 CCCTGAA
6544 CCCTGAA
1 CCCTGAA
6551 CCCTGAA
1 CCCTGAA
6558 CCCTGAA
1 CCCTGAA
6565 CCCTGAA
1 CCCTGAA
6572 -CCTGAA
1 CCCTGAA
6578 CCCTGAA
1 CCCTGAA
6585 CCCTGAA
1 CCCTGAA
6592 CCCTGAA
1 CCCTGAA
6599 CCCTGAA
1 CCCTGAA
6606 CCCTGAA
1 CCCTGAA
6613 CCCTGAA
1 CCCTGAA
6620 CCCTGAA
1 CCCTGAA
6627 CCCTGAA
1 CCCTGAA
6634 CCCTGAA
1 CCCTGAA
6641 CCCTGAA
1 CCCTGAA
6648 CCCTGAA
1 CCCTGAA
6655 CCCTGAA
1 CCCTGAA
6662 CCCTGAA
1 CCCTGAA
6669 CCCTGAA
1 CCCTGAA
6676 CCCTGAA
1 CCCTGAA
6683 CCCTGAA
1 CCCTGAA
6690 CCCTGAA
1 CCCTGAA
6697 CCCTGAA
1 CCCTGAA
6704 CCCTGAA
1 CCCTGAA
6711 CCCTGAA
1 CCCTGAA
6718 CCCTGAA
1 CCCTGAA
6725 CCCTGAA
1 CCCTGAA
6732 CCCTGAA
1 CCCTGAA
6739 CCCTGAA
1 CCCTGAA
6746 CCCTGAA
1 CCCTGAA
6753 CCCTGAA
1 CCCTGAA
6760 CCCTGAA
1 CCCTGAA
6767 CCCTGAA
1 CCCTGAA
6774 CCCTGAA
1 CCCTGAA
6781 CCCTGAA
1 CCCTGAA
6788 CCCTGAA
1 CCCTGAA
6795 CCCTGAA
1 CCCTGAA
6802 CCCTGAA
1 CCCTGAA
6809 CCCTGAA
1 CCCTGAA
6816 CCCTGAA
1 CCCTGAA
6823 CCCTGAA
1 CCCTGAA
6830 CCCTGAA
1 CCCTGAA
6837 CCCTGAA
1 CCCTGAA
6844 CCCTGAA
1 CCCTGAA
6851 CCCTGAA
1 CCCTGAA
6858 CCCTGAA
1 CCCTGAA
6865 CCCTGAA
1 CCCTGAA
6872 CCCTGAA
1 CCCTGAA
6879 CCCTGAA
1 CCCTGAA
6886 CCCTGAA
1 CCCTGAA
6893 CCCTGAA
1 CCCTGAA
6900 CCCTGAA
1 CCCTGAA
6907 CCCTGAA
1 CCCTGAA
6914 CCCTGAA
1 CCCTGAA
6921 CCCTGAA
1 CCCTGAA
6928 CCCTGAA
1 CCCTGAA
6935 CCCTGAA
1 CCCTGAA
6942 CCCTGAA
1 CCCTGAA
6949 CCCTGAA
1 CCCTGAA
6956 CCCTGAA
1 CCCTGAA
6963 CCCTGAA
1 CCCTGAA
6970 CCCTGAA
1 CCCTGAA
6977 CCCTGAA
1 CCCTGAA
6984 CCCTGAA
1 CCCTGAA
6991 CCCTGAA
1 CCCTGAA
6998 CCCTGAA
1 CCCTGAA
7005 CCCTGAA
1 CCCTGAA
7012 CCCTGAA
1 CCCTGAA
7019 CCCTGAA
1 CCCTGAA
7026 CCCTGAA
1 CCCTGAA
7033 CCCTGAA
1 CCCTGAA
7040 CCCTGAA
1 CCCTGAA
7047 CCCTGAA
1 CCCTGAA
7054 CCCTGAA
1 CCCTGAA
7061 CCCTGAA
1 CCCTGAA
7068 CCCTGAA
1 CCCTGAA
7075 CCCTGAA
1 CCCTGAA
7082 CCCTGAA
1 CCCTGAA
7089 CCCTGAA
1 CCCTGAA
7096 CCCTGAA
1 CCCTGAA
7103 CCCTGAA
1 CCCTGAA
7110 CCCTGAA
1 CCCTGAA
7117 CCCTGAA
1 CCCTGAA
7124 CCCTGAA
1 CCCTGAA
7131 CCCTGAA
1 CCCTGAA
7138 CCCTGAA
1 CCCTGAA
7145 CCCTG-A
1 CCCTGAA
7151 CCCTGAA
1 CCCTGAA
7158 CCCTGAA
1 CCCTGAA
7165 CCCTGAA
1 CCCTGAA
7172 CCCTG-A
1 CCCTGAA
7178 CCCTGAA
1 CCCTGAA
7185 CCCTG-A
1 CCCTGAA
7191 CCCTGAA
1 CCCTGAA
7198 CCCTGAA
1 CCCTGAA
7205 CCCTG-A
1 CCCTGAA
7211 CCCTG-A
1 CCCTGAA
7217 CCCTGAA
1 CCCTGAA
7224 CCCTG-A
1 CCCTGAA
7230 CCCTG-A
1 CCCTGAA
7236 CCCTG-A
1 CCCTGAA
7242 CCCTG-A
1 CCCTGAA
7248 CCCTG-A
1 CCCTGAA
7254 CCCTGAA
1 CCCTGAA
7261 CCCTG-A
1 CCCTGAA
7267 CCCTG-A
1 CCCTGAA
7273 CCCTG-A
1 CCCTGAA
7279 CCCTG-A
1 CCCTGAA
*
7285 CCCTGGA
1 CCCTGAA
*
7292 CCCTGGA
1 CCCTGAA
*
7299 CCCTGGA
1 CCCTGAA
7306 CCCTG-A
1 CCCTGAA
7312 CCCTG-A
1 CCCTGAA
7318 CCCTG-A
1 CCCTGAA
7324 -CCTG-A
1 CCCTGAA
*
7329 CCCTGGA
1 CCCTGAA
7336 CCCTG-A
1 CCCTGAA
*
7342 CCCTGGA
1 CCCTGAA
7349 CCCTG-A
1 CCCTGAA
7355 CCCTG-A
1 CCCTGAA
7361 CCCTG-A
1 CCCTGAA
*
7367 CCCTGGA
1 CCCTGAA
7374 CCCTG-A
1 CCCTGAA
7380 CCCTG-A
1 CCCTGAA
*
7386 CCCTGGA
1 CCCTGAA
*
7393 CCCTGGA
1 CCCTGAA
*
7400 CCCTGGA
1 CCCTGAA
*
7407 CCCTGGA
1 CCCTGAA
*
7414 CCCTGGA
1 CCCTGAA
*
7421 CCCTGGA
1 CCCTGAA
*
7428 CCCTGGA
1 CCCTGAA
*
7435 CCCTGGA
1 CCCTGAA
*
7442 CCCTGGA
1 CCCTGAA
*
7449 CCCTGGA
1 CCCTGAA
*
7456 CCCTGGA
1 CCCTGAA
*
7463 CCCTGGA
1 CCCTGAA
7470 CCCTG-A
1 CCCTGAA
7476 CCCTGAA
1 CCCTGAA
*
7483 CCCTGGA
1 CCCTGAA
*
7490 CCCTGGA
1 CCCTGAA
*
7497 CCCTGGA
1 CCCTGAA
*
7504 CCCTGGA
1 CCCTGAA
*
7511 CCCTGGA
1 CCCTGAA
*
7518 CCCTGGA
1 CCCTGAA
*
7525 CCCTGGA
1 CCCTGAA
*
7532 CCCTGGA
1 CCCTGAA
*
7539 CCCTGGA
1 CCCTGAA
*
7546 CCCTGGA
1 CCCTGAA
*
7553 CCCTGGA
1 CCCTGAA
*
7560 CCCTGGA
1 CCCTGAA
*
7567 CCCTGGA
1 CCCTGAA
*
7574 CCCTGGA
1 CCCTGAA
*
7581 CCCTGGA
1 CCCTGAA
*
7588 CCCTGGA
1 CCCTGAA
*
7595 CCCTGGA
1 CCCTGAA
*
7602 CCCTGGA
1 CCCTGAA
*
7609 CCCTGGA
1 CCCTGAA
*
7616 CCCTGGA
1 CCCTGAA
*
7623 -CCTGGA
1 CCCTGAA
*
7629 CCCTGGA
1 CCCTGAA
*
7636 CCCTGGA
1 CCCTGAA
*
7643 CCCTGGA
1 CCCTGAA
*
7650 CCCTGGA
1 CCCTGAA
*
7657 CCCTGGA
1 CCCTGAA
*
7664 CCCTGGA
1 CCCTGAA
*
7671 CCCTGGA
1 CCCTGAA
*
7678 CCCTGGA
1 CCCTGAA
*
7685 CCCTGGA
1 CCCTGAA
*
7692 CCCTGGA
1 CCCTGAA
*
7699 CCCTGGA
1 CCCTGAA
*
7706 CCCTGGA
1 CCCTGAA
*
7713 CCCTGGA
1 CCCTGAA
*
7720 CCCTGGA
1 CCCTGAA
*
7727 CCCTGGA
1 CCCTGAA
*
7734 CCCTGGA
1 CCCTGAA
*
7741 CCCTGGA
1 CCCTGAA
*
7748 CCCTGGA
1 CCCTGAA
*
7755 CCCTGGA
1 CCCTGAA
*
7762 CCCTGGA
1 CCCTGAA
*
7769 CCCTGGA
1 CCCTGAA
*
7776 CCCTGGA
1 CCCTGAA
*
7783 CCCTGGA
1 CCCTGAA
*
7790 CCCTGGA
1 CCCTGAA
*
7797 -CCTGGA
1 CCCTGAA
*
7803 CCCTGGA
1 CCCTGAA
*
7810 CCCTGGA
1 CCCTGAA
*
7817 CCCTGGA
1 CCCTGAA
*
7824 CCCTGGA
1 CCCTGAA
*
7831 CCCTGGA
1 CCCTGAA
*
7838 -CCTGGA
1 CCCTGAA
*
7844 CCCTGGA
1 CCCTGAA
*
7851 CCCTGGA
1 CCCTGAA
*
7858 CCCTGGA
1 CCCTGAA
*
7865 CCCTGGA
1 CCCTGAA
*
7872 CCCTGGA
1 CCCTGAA
*
7879 CCCTGGA
1 CCCTGAA
*
7886 CCCTGGA
1 CCCTGAA
*
7893 CCCTGGA
1 CCCTGAA
*
7900 CCCTGGA
1 CCCTGAA
*
7907 CCCTGGA
1 CCCTGAA
*
7914 CCCTGGA
1 CCCTGAA
*
7921 CCCTGGA
1 CCCTGAA
*
7928 CCCTGGA
1 CCCTGAA
*
7935 CCCTGGA
1 CCCTGAA
*
7942 CCCTGGA
1 CCCTGAA
*
7949 CCCTGGA
1 CCCTGAA
*
7956 CCCTGGA
1 CCCTGAA
*
7963 CCCTGGA
1 CCCTGAA
*
7970 CCCTGGA
1 CCCTGAA
*
7977 CCCTGGA
1 CCCTGAA
*
7984 CCCTGGA
1 CCCTGAA
*
7991 CCCTGGA
1 CCCTGAA
*
7998 CCCTGGA
1 CCCTGAA
*
8005 CCCTGGA
1 CCCTGAA
*
8012 CCCTGGA
1 CCCTGAA
*
8019 CCCTGGA
1 CCCTGAA
*
8026 CCCTGGA
1 CCCTGAA
*
8033 CCCTGGA
1 CCCTGAA
*
8040 -CCTGGA
1 CCCTGAA
*
8046 CCCTGGA
1 CCCTGAA
*
8053 CCCTGGA
1 CCCTGAA
*
8060 CCCTGGA
1 CCCTGAA
*
8067 CCCTGGA
1 CCCTGAA
*
8074 CCCTGGA
1 CCCTGAA
*
8081 CCCTGGA
1 CCCTGAA
*
8088 CCCTGGA
1 CCCTGAA
*
8095 CCCTGGA
1 CCCTGAA
*
8102 CCCTGGA
1 CCCTGAA
*
8109 CCCTGGA
1 CCCTGAA
*
8116 CCCTGGA
1 CCCTGAA
*
8123 CCCTGGA
1 CCCTGAA
*
8130 CCCTGGA
1 CCCTGAA
*
8137 CCCTGGA
1 CCCTGAA
*
8144 CCCTGGA
1 CCCTGAA
*
8151 CCCTGGA
1 CCCTGAA
*
8158 CCCTGGA
1 CCCTGAA
*
8165 CCCTGGA
1 CCCTGAA
*
8172 CCCTGGA
1 CCCTGAA
*
8179 -CCTGGA
1 CCCTGAA
*
8185 CCCTGGA
1 CCCTGAA
*
8192 CCCTGGA
1 CCCTGAA
*
8199 CCCTGGA
1 CCCTGAA
*
8206 CCCTGGA
1 CCCTGAA
*
8213 CCCTGGA
1 CCCTGAA
*
8220 CCCTGGA
1 CCCTGAA
*
8227 CCCTGGA
1 CCCTGAA
*
8234 CCCTGGA
1 CCCTGAA
*
8241 CCCTGGA
1 CCCTGAA
*
8248 CCCTGGA
1 CCCTGAA
*
8255 CCCTGGA
1 CCCTGAA
*
8262 CCCTGGA
1 CCCTGAA
*
8269 CCCTGGA
1 CCCTGAA
*
8276 CCCTGGA
1 CCCTGAA
*
8283 CCCTGGA
1 CCCTGAA
*
8290 CCCTGGA
1 CCCTGAA
*
8297 CCCTGGA
1 CCCTGAA
*
8304 CCCTGGA
1 CCCTGAA
*
8311 CCCTGGA
1 CCCTGAA
*
8318 CCCTGGA
1 CCCTGAA
*
8325 CCCTGGA
1 CCCTGAA
*
8332 CCCTGGA
1 CCCTGAA
*
8339 CCCTGGA
1 CCCTGAA
*
8346 CCCTGGA
1 CCCTGAA
*
8353 CCCTGGA
1 CCCTGAA
*
8360 CCCTGGA
1 CCCTGAA
*
8367 CCCTGGA
1 CCCTGAA
*
8374 CCCTGGA
1 CCCTGAA
*
8381 -CCTGGA
1 CCCTGAA
*
8387 CCCTGGA
1 CCCTGAA
*
8394 -CCTGGA
1 CCCTGAA
*
8400 CCCTGGA
1 CCCTGAA
*
8407 CCCTGGA
1 CCCTGAA
*
8414 CCCTGGA
1 CCCTGAA
*
8421 CCCTGGA
1 CCCTGAA
*
8428 CCCTGGA
1 CCCTGAA
*
8435 CCCTGGA
1 CCCTGAA
*
8442 CCCTGGA
1 CCCTGAA
*
8449 CCCTGGA
1 CCCTGAA
*
8456 CCCTGGA
1 CCCTGAA
*
8463 CCCTGGA
1 CCCTGAA
*
8470 CCCTGGA
1 CCCTGAA
*
8477 CCCTGGA
1 CCCTGAA
*
8484 CCCTGGA
1 CCCTGAA
*
8491 CCCTGGA
1 CCCTGAA
*
8498 CCCTGGA
1 CCCTGAA
*
8505 CCCTGGA
1 CCCTGAA
*
8512 CCCTGGA
1 CCCTGAA
*
8519 CCCTGGA
1 CCCTGAA
*
8526 CCCTGGA
1 CCCTGAA
*
8533 CCCTGGA
1 CCCTGAA
*
8540 CCCTGGA
1 CCCTGAA
*
8547 -CCTGGA
1 CCCTGAA
*
8553 CCCTGGA
1 CCCTGAA
*
8560 CCCTGGA
1 CCCTGAA
*
8567 CCCTGGA
1 CCCTGAA
*
8574 CCCTGGA
1 CCCTGAA
*
8581 -CCTGGA
1 CCCTGAA
*
8587 CCCTGGA
1 CCCTGAA
*
8594 CCCTGGA
1 CCCTGAA
*
8601 CCCTGGA
1 CCCTGAA
*
8608 -CCTGGA
1 CCCTGAA
*
8614 CCCTGGA
1 CCCTGAA
*
8621 CCCTGGA
1 CCCTGAA
*
8628 CCCTGGA
1 CCCTGAA
*
8635 CCCTGGA
1 CCCTGAA
*
8642 CCCTGGA
1 CCCTGAA
*
8649 CCCTGGA
1 CCCTGAA
*
8656 CCCTGGA
1 CCCTGAA
*
8663 CCCTGGA
1 CCCTGAA
*
8670 CCCTGGA
1 CCCTGAA
*
8677 CCCTGGA
1 CCCTGAA
*
8684 CCCTGGA
1 CCCTGAA
*
8691 CCCTGGA
1 CCCTGAA
*
8698 CCCTGGA
1 CCCTGAA
*
8705 CCCTGGA
1 CCCTGAA
*
8712 CCCTGGA
1 CCCTGAA
*
8719 CCCTGGA
1 CCCTGAA
*
8726 CCCTGGA
1 CCCTGAA
*
8733 CCCTGGA
1 CCCTGAA
*
8740 CCCTGGA
1 CCCTGAA
*
8747 CCCTGGA
1 CCCTGAA
*
8754 CCCTGGA
1 CCCTGAA
*
8761 CCCTGGA
1 CCCTGAA
*
8768 --CTGGA
1 CCCTGAA
*
8773 -CCTGGA
1 CCCTGAA
*
8779 CCCTGGA
1 CCCTGAA
*
8786 CCCTGGA
1 CCCTGAA
*
8793 CCCTGGA
1 CCCTGAA
*
8800 CCCTGGA
1 CCCTGAA
*
8807 CCCTGGA
1 CCCTGAA
*
8814 CCCTGGA
1 CCCTGAA
*
8821 CCCTGGA
1 CCCTGAA
*
8828 CCCTGGA
1 CCCTGAA
*
8835 CCCTGGA
1 CCCTGAA
*
8842 CCCTGGA
1 CCCTGAA
*
8849 CCCTGGA
1 CCCTGAA
*
8856 CCCTGGA
1 CCCTGAA
*
8863 CCCTGGA
1 CCCTGAA
*
8870 -CCTGGA
1 CCCTGAA
*
8876 CCCTGGA
1 CCCTGAA
*
8883 CCCTGGA
1 CCCTGAA
*
8890 CCCTGGA
1 CCCTGAA
*
8897 CCCTGGA
1 CCCTGAA
*
8904 CCCTGGA
1 CCCTGAA
*
8911 CCCTGGA
1 CCCTGAA
*
8918 CCCTGGA
1 CCCTGAA
*
8925 CCCTGGA
1 CCCTGAA
*
8932 CCCTGGA
1 CCCTGAA
*
8939 CCCTGGA
1 CCCTGAA
*
8946 CCCTGGA
1 CCCTGAA
*
8953 CCCTGGA
1 CCCTGAA
*
8960 CCCTGGA
1 CCCTGAA
*
8967 CCCTGGA
1 CCCTGAA
*
8974 -CCTGGA
1 CCCTGAA
*
8980 CCCTGGA
1 CCCTGAA
*
8987 CCCTGGA
1 CCCTGAA
*
8994 CCCTGGA
1 CCCTGAA
*
9001 CCCTGGA
1 CCCTGAA
*
9008 CCCTGGA
1 CCCTGAA
*
9015 CCCTGGA
1 CCCTGAA
*
9022 CCCTGGA
1 CCCTGAA
*
9029 CCCTGGA
1 CCCTGAA
*
9036 CCCTGGA
1 CCCTGAA
*
9043 CCCTGGA
1 CCCTGAA
*
9050 CCCTGGA
1 CCCTGAA
*
9057 CCCTGGA
1 CCCTGAA
*
9064 CCCTGGA
1 CCCTGAA
*
9071 CCCTGGA
1 CCCTGAA
*
9078 CCCTGGA
1 CCCTGAA
*
9085 CCCTGGA
1 CCCTGAA
*
9092 CCCTGGA
1 CCCTGAA
*
9099 CCCTGGA
1 CCCTGAA
*
9106 CCCTGGA
1 CCCTGAA
*
9113 CCCTGGA
1 CCCTGAA
*
9120 CCCTGGA
1 CCCTGAA
*
9127 CCCTGGA
1 CCCTGAA
*
9134 CCCTGGA
1 CCCTGAA
*
9141 CCCTGGA
1 CCCTGAA
*
9148 CCCTGGA
1 CCCTGAA
*
9155 CCCTGGA
1 CCCTGAA
*
9162 CCCTGGA
1 CCCTGAA
*
9169 CCCTGGA
1 CCCTGAA
*
9176 CCCTGGA
1 CCCTGAA
*
9183 CCCTGGA
1 CCCTGAA
*
9190 CCCTGGA
1 CCCTGAA
*
9197 CCCTGGA
1 CCCTGAA
*
9204 CCCTGGA
1 CCCTGAA
*
9211 CCCTGGA
1 CCCTGAA
*
9218 CCCTGGA
1 CCCTGAA
*
9225 CCCTGGA
1 CCCTGAA
*
9232 CCCTGGA
1 CCCTGAA
*
9239 CCCTGGA
1 CCCTGAA
*
9246 CCCTGGA
1 CCCTGAA
*
9253 CCCTGGA
1 CCCTGAA
*
9260 CCCTGGA
1 CCCTGAA
*
9267 CCCTGGA
1 CCCTGAA
*
9274 CCCTGGA
1 CCCTGAA
*
9281 -CCTGGA
1 CCCTGAA
*
9287 CCCTGGA
1 CCCTGAA
*
9294 CCCTGGA
1 CCCTGAA
*
9301 CCCTGGA
1 CCCTGAA
*
9308 CCCTGGA
1 CCCTGAA
*
9315 CCCTGGA
1 CCCTGAA
*
9322 -CCTGGA
1 CCCTGAA
*
9328 CCCTGGA
1 CCCTGAA
*
9335 -CCTGGA
1 CCCTGAA
*
9341 -CCTGGA
1 CCCTGAA
*
9347 CCCTGGA
1 CCCTGAA
*
9354 CCCTGGA
1 CCCTGAA
*
9361 CCCTGGA
1 CCCTGAA
*
9368 CCCTGGA
1 CCCTGAA
*
9375 CCCTGGA
1 CCCTGAA
*
9382 CCCTGGA
1 CCCTGAA
*
9389 CCCTGGA
1 CCCTGAA
*
9396 CCCTGGA
1 CCCTGAA
*
9403 CCCTGGA
1 CCCTGAA
*
9410 CCCTGGA
1 CCCTGAA
*
9417 CCCTGGA
1 CCCTGAA
*
9424 CCCTGGA
1 CCCTGAA
*
9431 CCCTGGA
1 CCCTGAA
*
9438 CCCTGGA
1 CCCTGAA
*
9445 CCCTGGA
1 CCCTGAA
*
9452 CCCTGGA
1 CCCTGAA
*
9459 CCCTGGA
1 CCCTGAA
*
9466 CCCTGGA
1 CCCTGAA
*
9473 CCCTGGA
1 CCCTGAA
*
9480 CCCTGGA
1 CCCTGAA
*
9487 CCCTGGA
1 CCCTGAA
*
9494 CCCTGGA
1 CCCTGAA
*
9501 CCCTGGA
1 CCCTGAA
*
9508 CCCTGGA
1 CCCTGAA
*
9515 CCCTGGA
1 CCCTGAA
*
9522 CCCTGGA
1 CCCTGAA
*
9529 CCCTGGA
1 CCCTGAA
*
9536 CCCTGGA
1 CCCTGAA
*
9543 CCCTGGA
1 CCCTGAA
*
9550 CCCTGGA
1 CCCTGAA
*
9557 CCCTGGA
1 CCCTGAA
*
9564 CCCTGGA
1 CCCTGAA
*
9571 -CCTGGA
1 CCCTGAA
*
9577 -CCTGGA
1 CCCTGAA
*
9583 CCCTGGA
1 CCCTGAA
*
9590 CCCTGGA
1 CCCTGAA
*
9597 CCCTGGA
1 CCCTGAA
*
9604 CCCTGGA
1 CCCTGAA
*
9611 -CCTGGA
1 CCCTGAA
*
9617 CCCTGGA
1 CCCTGAA
*
9624 CCCTGGA
1 CCCTGAA
*
9631 CCCTGGA
1 CCCTGAA
*
9638 CCCTGGA
1 CCCTGAA
*
9645 CCCTGGA
1 CCCTGAA
*
9652 CCCTGGA
1 CCCTGAA
*
9659 CCCTGGA
1 CCCTGAA
*
9666 CCCTGGA
1 CCCTGAA
*
9673 CCCTGGA
1 CCCTGAA
*
9680 CCCTGGA
1 CCCTGAA
*
9687 -CCTGGA
1 CCCTGAA
*
9693 CCCTGGA
1 CCCTGAA
*
9700 CCCTGGA
1 CCCTGAA
*
9707 CCCTGGA
1 CCCTGAA
*
9714 CCCTGGA
1 CCCTGAA
*
9721 CCCTGGA
1 CCCTGAA
*
9728 CCCTGGA
1 CCCTGAA
*
9735 CCCTGGA
1 CCCTGAA
*
9742 CCCTGGA
1 CCCTGAA
*
9749 CCCTGGA
1 CCCTGAA
*
9756 CCCTGGA
1 CCCTGAA
*
9763 CCCTGGA
1 CCCTGAA
*
9770 CCCTGGA
1 CCCTGAA
*
9777 CCCTGGA
1 CCCTGAA
*
9784 CCCTGGA
1 CCCTGAA
*
9791 CCCTGGA
1 CCCTGAA
*
9798 CCCTGGA
1 CCCTGAA
*
9805 CCCTGGA
1 CCCTGAA
*
9812 CCCTGGA
1 CCCTGAA
*
9819 CCCTGGA
1 CCCTGAA
*
9826 CCCTGGA
1 CCCTGAA
*
9833 CCCTGGA
1 CCCTGAA
*
9840 CCCTGGA
1 CCCTGAA
*
9847 CCCTGGA
1 CCCTGAA
*
9854 CCCTGGA
1 CCCTGAA
*
9861 CCCTGGA
1 CCCTGAA
*
9868 CCCTGGA
1 CCCTGAA
*
9875 CCCTGGA
1 CCCTGAA
*
9882 CCCTGGA
1 CCCTGAA
*
9889 CCCTGGA
1 CCCTGAA
*
9896 CCCTGGA
1 CCCTGAA
*
9903 CCCTGGA
1 CCCTGAA
*
9910 CCCTGGA
1 CCCTGAA
*
9917 CCCTGGA
1 CCCTGAA
*
9924 CCCTGGA
1 CCCTGAA
*
9931 CCCTGGA
1 CCCTGAA
*
9938 CCCTGGA
1 CCCTGAA
*
9945 CCCTGGA
1 CCCTGAA
*
9952 CCCTGGA
1 CCCTGAA
*
9959 CCCTGGA
1 CCCTGAA
*
9966 CCCTGGA
1 CCCTGAA
*
9973 CCCTGGA
1 CCCTGAA
*
9980 CCCTGGA
1 CCCTGAA
*
9987 CCCTGGA
1 CCCTGAA
*
9994 CCCTGGA
1 CCCTGAA
*
10001 CCCTGGA
1 CCCTGAA
*
10008 CCCTGGA
1 CCCTGAA
*
10015 CCCTGGA
1 CCCTGAA
*
10022 CCCTGGA
1 CCCTGAA
*
10029 CCCTGGA
1 CCCTGAA
*
10036 CCCTGGA
1 CCCTGAA
*
10043 CCCTGGA
1 CCCTGAA
*
10050 CCCTGGA
1 CCCTGAA
*
10057 -CCTGGA
1 CCCTGAA
*
10063 CCCTGGA
1 CCCTGAA
*
10070 CCCTGGA
1 CCCTGAA
*
10077 CCCTGGA
1 CCCTGAA
*
10084 CCCTGGA
1 CCCTGAA
*
10091 CCCTGGA
1 CCCTGAA
*
10098 CCCTGGA
1 CCCTGAA
*
10105 CCCTGGA
1 CCCTGAA
*
10112 CCCTGGA
1 CCCTGAA
*
10119 CCCTGGA
1 CCCTGAA
*
10126 -CCTGGA
1 CCCTGAA
*
10132 CCCTGGA
1 CCCTGAA
*
10139 CCCTGGA
1 CCCTGAA
*
10146 CCCTGGA
1 CCCTGAA
*
10153 CCCTGGA
1 CCCTGAA
*
10160 CCCTGGA
1 CCCTGAA
*
10167 CCCTGGA
1 CCCTGAA
*
10174 -CCTGGA
1 CCCTGAA
*
10180 CCCTGGA
1 CCCTGAA
*
10187 CCCTGGA
1 CCCTGAA
*
10194 CCCTGGA
1 CCCTGAA
*
10201 CCCTGGA
1 CCCTGAA
*
10208 CCCTGGA
1 CCCTGAA
*
10215 CCCTGGA
1 CCCTGAA
*
10222 CCCTGGA
1 CCCTGAA
*
10229 CCCTGGA
1 CCCTGAA
*
10236 CCCTGGA
1 CCCTGAA
*
10243 CCCTGGA
1 CCCTGAA
*
10250 CCCTGGA
1 CCCTGAA
*
10257 CCCTGGA
1 CCCTGAA
*
10264 CCCTGGA
1 CCCTGAA
*
10271 CCCTGGA
1 CCCTGAA
*
10278 CCCTGGA
1 CCCTGAA
*
10285 CCCTGGA
1 CCCTGAA
*
10292 CCCTGGA
1 CCCTGAA
*
10299 CCCTGGA
1 CCCTGAA
*
10306 CCCTGGA
1 CCCTGAA
*
10313 CCCTGGA
1 CCCTGAA
*
10320 -CCTGGA
1 CCCTGAA
*
10326 CCCTGGA
1 CCCTGAA
*
10333 CCCTGGA
1 CCCTGAA
*
10340 CCCTGGA
1 CCCTGAA
*
10347 CCCTGGA
1 CCCTGAA
*
10354 CCCTGGA
1 CCCTGAA
*
10361 CCCTGGA
1 CCCTGAA
*
10368 CCCTGGA
1 CCCTGAA
*
10375 CCCTGGA
1 CCCTGAA
*
10382 CCCTGGA
1 CCCTGAA
*
10389 CCCTGGA
1 CCCTGAA
*
10396 CCCTGGA
1 CCCTGAA
*
10403 CCCTGGA
1 CCCTGAA
*
10410 CCCTGGA
1 CCCTGAA
*
10417 CCCTGGA
1 CCCTGAA
*
10424 CCCTGGA
1 CCCTGAA
*
10431 CCCTGGA
1 CCCTGAA
*
10438 CCCTGGA
1 CCCTGAA
*
10445 CCCTGGA
1 CCCTGAA
*
10452 CCCTGGA
1 CCCTGAA
*
10459 CCCTGGA
1 CCCTGAA
*
10466 CCCTGGA
1 CCCTGAA
*
10473 CCCTGGA
1 CCCTGAA
*
10480 CCCTGGA
1 CCCTGAA
*
10487 CCCTGGA
1 CCCTGAA
*
10494 CCCTGGA
1 CCCTGAA
*
10501 CCCTGGA
1 CCCTGAA
*
10508 CCCTGGA
1 CCCTGAA
*
10515 CCCTGGA
1 CCCTGAA
*
10522 CCCTGGA
1 CCCTGAA
*
10529 CCCTGGA
1 CCCTGAA
*
10536 CCCTGGA
1 CCCTGAA
*
10543 CCCTGGA
1 CCCTGAA
*
10550 CCCTGGA
1 CCCTGAA
*
10557 CCCTGGA
1 CCCTGAA
*
10564 CCCTGGA
1 CCCTGAA
*
10571 CCCTGGA
1 CCCTGAA
*
10578 CCCTGGA
1 CCCTGAA
*
10585 CCCTGGA
1 CCCTGAA
*
10592 CCCTGGA
1 CCCTGAA
*
10599 CCCTGGA
1 CCCTGAA
*
10606 CCCTGGA
1 CCCTGAA
*
10613 CCCTGGA
1 CCCTGAA
*
10620 CCCTGGA
1 CCCTGAA
*
10627 CCCTGGA
1 CCCTGAA
*
10634 CCCTGGA
1 CCCTGAA
*
10641 CCCTGGA
1 CCCTGAA
*
10648 CCCTGGA
1 CCCTGAA
*
10655 CCCTGGA
1 CCCTGAA
*
10662 CCCTGGA
1 CCCTGAA
*
10669 CCCTGGA
1 CCCTGAA
*
10676 CCCTGGA
1 CCCTGAA
*
10683 CCCTGGA
1 CCCTGAA
*
10690 CCCTGGA
1 CCCTGAA
*
10697 CCCTGGA
1 CCCTGAA
*
10704 CCCTGGA
1 CCCTGAA
*
10711 CCCTGGA
1 CCCTGAA
*
10718 CCCTGGA
1 CCCTGAA
*
10725 CCCTGGA
1 CCCTGAA
*
10732 CCCTGGA
1 CCCTGAA
*
10739 CCCTGGA
1 CCCTGAA
*
10746 CCCTGGA
1 CCCTGAA
*
10753 CCCTGGA
1 CCCTGAA
*
10760 CCCTGGA
1 CCCTGAA
*
10767 CCCTGGA
1 CCCTGAA
*
10774 CCCTGGA
1 CCCTGAA
*
10781 CCCTGGA
1 CCCTGAA
*
10788 CCCTGGA
1 CCCTGAA
*
10795 CCCTGGA
1 CCCTGAA
*
10802 CCCTGGA
1 CCCTGAA
*
10809 CCCTGGA
1 CCCTGAA
*
10816 CCCTGGA
1 CCCTGAA
10823 CCC
1 CCC
10826 CGACCTGGAC
Statistics
Matches: 10289, Mismatches: 212, Indels: 634
0.92 0.02 0.06
Matches are distributed among these distances:
4 18 0.00
5 143 0.01
6 1551 0.15
7 8411 0.82
8 146 0.01
9 14 0.00
10 6 0.00
ACGTcount: A:0.29, C:0.43, G:0.13, T:0.14
Consensus pattern (7 bp):
CCCTGAA
Found at i:10875 original size:7 final size:7
Alignment explanation
Indices: 10865--11071 Score: 328
Period size: 7 Copynumber: 31.1 Consensus size: 7
10855 ACCCCCTGGA
10865 CCCCGAG
1 CCCCGAG
10872 CCCCG-G
1 CCCCGAG
*
10878 ACCCGAG
1 CCCCGAG
10885 CCCCGAG
1 CCCCGAG
10892 CCCCGAG
1 CCCCGAG
10899 -CCCGAG
1 CCCCGAG
10905 -CCCGAG
1 CCCCGAG
10911 CCCCGAG
1 CCCCGAG
10918 -CCCGAG
1 CCCCGAG
10924 CCCCGAG
1 CCCCGAG
10931 CCCCGAG
1 CCCCGAG
10938 CCCCGAG
1 CCCCGAG
10945 CCCCGAG
1 CCCCGAG
10952 -CCCGAG
1 CCCCGAG
10958 CCCCGAG
1 CCCCGAG
10965 CCCCGAG
1 CCCCGAG
10972 CCCCGAG
1 CCCCGAG
10979 CCCCGAG
1 CCCCGAG
10986 -CCCGAG
1 CCCCGAG
10992 CCCCGAG
1 CCCCGAG
10999 -CCCGAG
1 CCCCGAG
11005 -CCCGAG
1 CCCCGAG
11011 CCCCGAG
1 CCCCGAG
11018 CCCCGAG
1 CCCCGAG
11025 -CCCGAG
1 CCCCGAG
11031 CCCCGAG
1 CCCCGAG
11038 -CCCGAG
1 CCCCGAG
11044 CCCCGAG
1 CCCCGAG
11051 CCCCGAG
1 CCCCGAG
11058 CCCCGAG
1 CCCCGAG
11065 -CCCGAG
1 CCCCGAG
11071 C
1 C
11072 GAGCCCCCCC
Statistics
Matches: 189, Mismatches: 2, Indels: 18
0.90 0.01 0.09
Matches are distributed among these distances:
6 65 0.34
7 124 0.66
ACGTcount: A:0.15, C:0.55, G:0.30, T:0.00
Consensus pattern (7 bp):
CCCCGAG
Found at i:10881 original size:14 final size:13
Alignment explanation
Indices: 10863--11071 Score: 255
Period size: 13 Copynumber: 15.8 Consensus size: 13
10853 GGACCCCCTG
10863 GACCCCGAGCCCC
1 GACCCCGAGCCCC
10876 GGA-CCCGAGCCCC
1 -GACCCCGAGCCCC
10889 GAGCCCCGAG-CCC
1 GA-CCCCGAGCCCC
*
10902 GAGCCCGAGCCCC
1 GACCCCGAGCCCC
*
10915 GAGCCCGAGCCCC
1 GACCCCGAGCCCC
10928 GAGCCCCGAGCCCC
1 GA-CCCCGAGCCCC
10942 GAGCCCCGAG-CCC
1 GA-CCCCGAGCCCC
10955 GAGCCCCGAGCCCC
1 GA-CCCCGAGCCCC
10969 GAGCCCCGAGCCCC
1 GA-CCCCGAGCCCC
*
10983 GAGCCCGAGCCCC
1 GACCCCGAGCCCC
*
10996 GAGCCCGAG-CCC
1 GACCCCGAGCCCC
11008 GAGCCCCGAGCCCC
1 GA-CCCCGAGCCCC
*
11022 GAGCCCGAGCCCC
1 GACCCCGAGCCCC
*
11035 GAGCCCGAGCCCC
1 GACCCCGAGCCCC
11048 GAGCCCCGAGCCCC
1 GA-CCCCGAGCCCC
*
11062 GAGCCCGAGC
1 GACCCCGAGC
11072 GAGCCCCCCC
Statistics
Matches: 180, Mismatches: 7, Indels: 17
0.88 0.03 0.08
Matches are distributed among these distances:
12 13 0.07
13 103 0.57
14 64 0.36
ACGTcount: A:0.15, C:0.55, G:0.30, T:0.00
Consensus pattern (13 bp):
GACCCCGAGCCCC
Found at i:10890 original size:20 final size:21
Alignment explanation
Indices: 10865--11071 Score: 292
Period size: 20 Copynumber: 10.4 Consensus size: 21
10855 ACCCCCTGGA
10865 CCCCGAGCCCCG-GACCCGAG
1 CCCCGAGCCCCGAGACCCGAG
10885 CCCCGAGCCCCGAG-CCCGAG
1 CCCCGAGCCCCGAGACCCGAG
10905 -CCCGAGCCCCGAG-CCCGAG
1 CCCCGAGCCCCGAGACCCGAG
*
10924 CCCCGAGCCCCGAGCCCCGAG
1 CCCCGAGCCCCGAGACCCGAG
*
10945 CCCCGAG-CCCGAGCCCCGAG
1 CCCCGAGCCCCGAGACCCGAG
*
10965 CCCCGAGCCCCGAGCCCCGAG
1 CCCCGAGCCCCGAGACCCGAG
10986 -CCCGAGCCCCGAG-CCCGAG
1 CCCCGAGCCCCGAGACCCGAG
*
11005 -CCCGAGCCCCGAGCCCCGAG
1 CCCCGAGCCCCGAGACCCGAG
11025 -CCCGAGCCCCGAG-CCCGAG
1 CCCCGAGCCCCGAGACCCGAG
*
11044 CCCCGAGCCCCGAGCCCCGAG
1 CCCCGAGCCCCGAGACCCGAG
11065 -CCCGAGC
1 CCCCGAGC
11072 GAGCCCCCCC
Statistics
Matches: 180, Mismatches: 0, Indels: 14
0.93 0.00 0.07
Matches are distributed among these distances:
19 44 0.24
20 103 0.57
21 33 0.18
ACGTcount: A:0.15, C:0.55, G:0.30, T:0.00
Consensus pattern (21 bp):
CCCCGAGCCCCGAGACCCGAG
Found at i:11155 original size:7 final size:7
Alignment explanation
Indices: 11085--11135 Score: 61
Period size: 7 Copynumber: 7.4 Consensus size: 7
11075 CCCCCCCGAG
*
11085 CCCTTAA
1 CCCTGAA
11092 CCCTGAA
1 CCCTGAA
11099 CCCTGAA
1 CCCTGAA
11106 CCCTGAA
1 CCCTGAA
11113 -CCTGAAA
1 CCCTG-AA
*
11120 CCCAG-A
1 CCCTGAA
11126 CCCTGAA
1 CCCTGAA
11133 CCC
1 CCC
11136 CAGACCCAGA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
6 9 0.24
7 26 0.68
8 3 0.08
ACGTcount: A:0.29, C:0.45, G:0.12, T:0.14
Consensus pattern (7 bp):
CCCTGAA
Found at i:11155 original size:20 final size:20
Alignment explanation
Indices: 11105--11162 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
11095 TGAACCCTGA
** *
11105 ACCCTGAACCTGAAACCCAG
1 ACCCTGAACCCCAGACCCAG
11125 ACCCTGAACCCCAGACCCAG
1 ACCCTGAACCCCAGACCCAG
11145 ACCCTGAACCCCAGACCC
1 ACCCTGAACCCCAGACCC
11163 CGGACCCCGG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.31, C:0.48, G:0.14, T:0.07
Consensus pattern (20 bp):
ACCCTGAACCCCAGACCCAG
Found at i:11162 original size:7 final size:7
Alignment explanation
Indices: 11152--11278 Score: 245
Period size: 7 Copynumber: 18.1 Consensus size: 7
11142 CAGACCCTGA
*
11152 ACCCCAG
1 ACCCCGG
11159 ACCCCGG
1 ACCCCGG
11166 ACCCCGG
1 ACCCCGG
11173 ACCCCGG
1 ACCCCGG
11180 ACCCCGG
1 ACCCCGG
11187 ACCCCGG
1 ACCCCGG
11194 ACCCCGG
1 ACCCCGG
11201 ACCCCGG
1 ACCCCGG
11208 ACCCCGG
1 ACCCCGG
11215 ACCCCGG
1 ACCCCGG
11222 ACCCCGG
1 ACCCCGG
11229 ACCCCGG
1 ACCCCGG
11236 ACCCCGG
1 ACCCCGG
11243 ACCCCGG
1 ACCCCGG
11250 ACCCCGG
1 ACCCCGG
11257 ACCCCGG
1 ACCCCGG
11264 ACCCCGG
1 ACCCCGG
11271 ACCCCGG
1 ACCCCGG
11278 A
1 A
11279 AGTAAGCCCG
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
7 119 1.00
ACGTcount: A:0.16, C:0.57, G:0.28, T:0.00
Consensus pattern (7 bp):
ACCCCGG
Found at i:11162 original size:14 final size:13
Alignment explanation
Indices: 11098--11142 Score: 54
Period size: 14 Copynumber: 3.3 Consensus size: 13
11088 TTAACCCTGA
*
11098 ACCCTGAACCCTG
1 ACCCTGAACCCAG
*
11111 AACCTGAAACCCAG
1 ACCCTG-AACCCAG
11125 ACCCTGAACCCCAG
1 ACCCTGAA-CCCAG
11139 ACCC
1 ACCC
11143 AGACCCTGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
13 7 0.26
14 20 0.74
ACGTcount: A:0.31, C:0.47, G:0.13, T:0.09
Consensus pattern (13 bp):
ACCCTGAACCCAG
Found at i:14927 original size:12 final size:12
Alignment explanation
Indices: 14910--14934 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14900 TCTTCGGGGA
14910 CTTTTTCTTCTT
1 CTTTTTCTTCTT
14922 CTTTTTCTTCTT
1 CTTTTTCTTCTT
14934 C
1 C
14935 AGGGTTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:15160 original size:24 final size:24
Alignment explanation
Indices: 15121--15167 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
15111 CAAAATCCGT
**
15121 GTATTGACCACTATCAAAGTTCGG
1 GTATTGACCAAGATCAAAGTTCGG
*
15145 GTATTGACCAAGATCAAATTTCG
1 GTATTGACCAAGATCAAAGTTCG
15168 AATACTGACT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (24 bp):
GTATTGACCAAGATCAAAGTTCGG
Found at i:16323 original size:19 final size:19
Alignment explanation
Indices: 16282--16345 Score: 75
Period size: 19 Copynumber: 3.6 Consensus size: 19
16272 GAAATGAAAA
16282 TCGCATTGCGATTTTC---
1 TCGCATTGCGATTTTCATT
16298 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
16315 TCGCATTGCGATTTCCATT
1 TCGCATTGCGATTTTCATT
*
16334 TCGCGTTGCGAT
1 TCGCATTGCGAT
16346 AGTCTGTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
14 11 0.27
16 3 0.07
17 3 0.07
19 24 0.59
ACGTcount: A:0.12, C:0.23, G:0.20, T:0.44
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:16379 original size:7 final size:7
Alignment explanation
Indices: 16364--16414 Score: 52
Period size: 7 Copynumber: 7.3 Consensus size: 7
16354 TTGCCTTCAA
*
16364 CCTAAAC
1 CCTAGAC
16371 CCTAGAC
1 CCTAGAC
16378 CCTAGA-
1 CCTAGAC
16384 CCTGAGAC
1 CCT-AGAC
*
16392 CC-CGAGC
1 CCTAGA-C
16399 CCTAGAC
1 CCTAGAC
16406 CCTAGAC
1 CCTAGAC
16413 CC
1 CC
16415 GACCAAAATG
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
6 5 0.14
7 28 0.76
8 4 0.11
ACGTcount: A:0.27, C:0.45, G:0.16, T:0.12
Consensus pattern (7 bp):
CCTAGAC
Found at i:21412 original size:214 final size:213
Alignment explanation
Indices: 21038--21457 Score: 777
Period size: 214 Copynumber: 2.0 Consensus size: 213
21028 TATCACAGTA
*
21038 TATTCACATGCCATAACAATTCTCAGTTTCTCGTTTATTTAGAGTGATTTTCTAATGGTAGTGGC
1 TATTCACATGCCATAACAATTCTCAGTTTCTCGTTTATTTAGAGTGATTGTCTAATGGTAGTGGC
*
21103 TGTAAGATGTGCCAGTAATTCTCAGAGTGAACTTTGCTATGAAGAATTATTCGAACGTTGATCAG
66 TGTAAGATGTGCCAGTAATTCTCAGAGTGAACTTTGCTATGAAGAACTATTCGAACGTTGATCAG
21168 AGCTGTATCTAGTGGCTAATATATTCTGTTAGTATGGCAGCATGAATTTCCAGAAATGATCTTAC
131 AGCTGTATCTAGTGGCTAATATATTCTGTTAGTATGGCAGCATGAATTTCCAGAAATGATCTTAC
21233 TATGAAGCTTTCTTCTAC
196 TATGAAGCTTTCTTCTAC
*
21251 TATTCGCATGCCATAACAATTCTCAGTTTCTCGTTTATTATAGAGTGATTGTCTAATGGTAGTGG
1 TATTCACATGCCATAACAATTCTCAGTTTCTCGTTTATT-TAGAGTGATTGTCTAATGGTAGTGG
**
21316 CTGTAAGATGTGCCAGTAATTCTCAGTTTGAACTTTGCTATGAAGAACTATTCGAACGTTGATCA
65 CTGTAAGATGTGCCAGTAATTCTCAGAGTGAACTTTGCTATGAAGAACTATTCGAACGTTGATCA
*
21381 GAGCTGTATCTAGTGGGTAATATATTCTGTTAGTATGGCAGCATGAATTTCCAGAAATGATCTTA
130 GAGCTGTATCTAGTGGCTAATATATTCTGTTAGTATGGCAGCATGAATTTCCAGAAATGATCTTA
21446 CTATGAAGCTTT
195 CTATGAAGCTTT
21458 GGTCTACCAT
Statistics
Matches: 200, Mismatches: 6, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
213 38 0.19
214 162 0.81
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37
Consensus pattern (213 bp):
TATTCACATGCCATAACAATTCTCAGTTTCTCGTTTATTTAGAGTGATTGTCTAATGGTAGTGGC
TGTAAGATGTGCCAGTAATTCTCAGAGTGAACTTTGCTATGAAGAACTATTCGAACGTTGATCAG
AGCTGTATCTAGTGGCTAATATATTCTGTTAGTATGGCAGCATGAATTTCCAGAAATGATCTTAC
TATGAAGCTTTCTTCTAC
Found at i:23281 original size:18 final size:18
Alignment explanation
Indices: 23258--23293 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
23248 AGGCAGCAAA
23258 GTGTGCGTGTTGCGAAAG
1 GTGTGCGTGTTGCGAAAG
23276 GTGTGCGTGTTGCGAAAG
1 GTGTGCGTGTTGCGAAAG
23294 TGAAATTCGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.11, G:0.44, T:0.28
Consensus pattern (18 bp):
GTGTGCGTGTTGCGAAAG
Found at i:23334 original size:20 final size:20
Alignment explanation
Indices: 23307--23411 Score: 79
Period size: 20 Copynumber: 5.2 Consensus size: 20
23297 AATTCGCAAC
*
23307 GCGAATTTCAATTGTGTGTT
1 GCGAATTTCAATTCTGTGTT
* * *
23327 GTGAATTTGACTTCTGTGTT
1 GCGAATTTCAATTCTGTGTT
* * *
23347 GCGAATTTGACTTCTGTATT
1 GCGAATTTCAATTCTGTGTT
*
23367 GCG-ATTTACAAATTC-GCGTT
1 GCGAATTT-C-AATTCTGTGTT
** *
23387 GCGAATTTCAAAACTGAGTT
1 GCGAATTTCAATTCTGTGTT
23407 GCGAA
1 GCGAA
23412 GTTGGAGTTC
Statistics
Matches: 68, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
19 7 0.10
20 53 0.78
21 8 0.12
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.39
Consensus pattern (20 bp):
GCGAATTTCAATTCTGTGTT
Found at i:23937 original size:20 final size:20
Alignment explanation
Indices: 23912--23983 Score: 99
Period size: 20 Copynumber: 3.5 Consensus size: 20
23902 TTTTCCCAAT
23912 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGTAAA
23932 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGTAAA
* ** *
23952 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAA-TAAGTAAA
23973 TCGCAATGCGA
1 TCGCAATGCGA
23984 TACTTACTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 31 0.67
21 15 0.33
ACGTcount: A:0.40, C:0.18, G:0.24, T:0.18
Consensus pattern (20 bp):
TCGCAATGCGAATAAGTAAA
Found at i:24062 original size:20 final size:20
Alignment explanation
Indices: 24014--24066 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
24004 TAATACAAAA
* *
24014 TCGCAACGAGATACTGACTT
1 TCGCAACGCGATTCTGACTT
24034 TCGCAACGCGATTCTGACTT
1 TCGCAACGCGATTCTGACTT
24054 TCGCAACGCGATT
1 TCGCAACGCGATT
24067 TACATAGCGC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (20 bp):
TCGCAACGCGATTCTGACTT
Found at i:24506 original size:19 final size:19
Alignment explanation
Indices: 24468--24534 Score: 80
Period size: 19 Copynumber: 3.5 Consensus size: 19
24458 TTCGAGAATG
24468 AAAATCGCAACGCGGAAATA
1 AAAATCGCAACGC-GAAATA
**
24488 ACTATCGCAACGCGAAATA
1 AAAATCGCAACGCGAAATA
* * *
24507 AAAAACGCAACGCGATACA
1 AAAATCGCAACGCGAAATA
24526 AAAATCGCA
1 AAAATCGCA
24535 TTGCGATTTT
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
19 28 0.72
20 11 0.28
ACGTcount: A:0.49, C:0.24, G:0.16, T:0.10
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATA
Found at i:24611 original size:19 final size:19
Alignment explanation
Indices: 24530--24600 Score: 115
Period size: 19 Copynumber: 3.7 Consensus size: 19
24520 GATACAAAAA
* *
24530 TCGCATTGCGATTTTTATT
1 TCGCGTTGCGATTTTCATT
24549 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
24568 TCGCGTTTGCGATTTTCATT
1 TCGCG-TTGCGATTTTCATT
24588 TCGCGTTGCGATT
1 TCGCGTTGCGATT
24601 GTCTGGTCGC
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
19 30 0.61
20 19 0.39
ACGTcount: A:0.11, C:0.20, G:0.21, T:0.48
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:24611 original size:39 final size:39
Alignment explanation
Indices: 24535--24611 Score: 111
Period size: 39 Copynumber: 2.0 Consensus size: 39
24525 AAAAATCGCA
* * *
24535 TTGCGATTTTTATTTCGCGTTGCGATTTTCATTTCGCGT
1 TTGCGATTTTCATTTCGCGTTGCGATTGTCATGTCGCGT
24574 TTGCGATTTTCATTTCGCGTTGCGATTGTC-TGGTCGCG
1 TTGCGATTTTCATTTCGCGTTGCGATTGTCAT-GTCGCG
24612 ATAGTCATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
38 1 0.03
39 33 0.97
ACGTcount: A:0.09, C:0.19, G:0.25, T:0.47
Consensus pattern (39 bp):
TTGCGATTTTCATTTCGCGTTGCGATTGTCATGTCGCGT
Found at i:24798 original size:14 final size:14
Alignment explanation
Indices: 24779--24814 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
24769 ATTGTTTAAT
24779 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
24793 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
24807 TGATTTGT
1 TGATTTGT
24815 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:25044 original size:33 final size:32
Alignment explanation
Indices: 24997--25123 Score: 166
Period size: 33 Copynumber: 3.9 Consensus size: 32
24987 ATTAAATTCG
*
24997 CGTTGCGATTTTCATTTCGTATTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATT-CCT
* * **
25030 CGTTACGATTTTCATTTTGCATTGCGAAATT-AG
1 CGTTGCGATTTTCATTTCGCATTGCG--ATTCCT
25063 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTC-CT
25096 CGTTGCGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
25124 AGTAATTTCC
Statistics
Matches: 81, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
31 3 0.04
33 75 0.93
35 3 0.04
ACGTcount: A:0.16, C:0.21, G:0.19, T:0.44
Consensus pattern (32 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCT
Found at i:25087 original size:19 final size:19
Alignment explanation
Indices: 25065--25123 Score: 74
Period size: 19 Copynumber: 3.4 Consensus size: 19
25055 GAAATTAGCG
25065 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
25084 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
25098 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
25117 TTGCGAT
1 TTGCGAT
25124 AGTAATTTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 6 0.18
16 7 0.21
17 7 0.21
19 13 0.39
ACGTcount: A:0.14, C:0.22, G:0.19, T:0.46
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:25098 original size:66 final size:66
Alignment explanation
Indices: 24990--25122 Score: 221
Period size: 66 Copynumber: 2.0 Consensus size: 66
24980 ACGCGAAATT
* * *
24990 AAATTCGCGTTGCGATTTTCATTTCGTATTGCGATTCCCTCGTTACGATTTTCATTTTGCATTGC
1 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTACGATTTTCATTTCGCATTGC
25055 G
66 G
* *
25056 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGC
1 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTACGATTTTCATTTCGCATTGC
25121 G
66 G
25122 A
1 A
25123 TAGTAATTTC
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 62 1.00
ACGTcount: A:0.17, C:0.21, G:0.19, T:0.43
Consensus pattern (66 bp):
AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTACGATTTTCATTTCGCATTGC
G
Found at i:25883 original size:14 final size:16
Alignment explanation
Indices: 25859--25932 Score: 57
Period size: 19 Copynumber: 4.5 Consensus size: 16
25849 TGAAAATCGC
*
25859 ATTGCGGTTTTC-TCG
1 ATTGCGATTTTCTTCG
25874 -TTGCGATTTTCATTTCG
1 ATTGCGATTTTC--TTCG
25891 CATTGCGATTTTCATTTCG
1 -ATTGCGATTTTC--TTCG
25910 CATTGCGATTTTC-TCG
1 -ATTGCGATTTTCTTCG
25926 -TTGCGAT
1 ATTGCGAT
25933 AGCCATTTCG
Statistics
Matches: 53, Mismatches: 1, Indels: 11
0.82 0.02 0.17
Matches are distributed among these distances:
14 17 0.32
16 3 0.06
17 3 0.06
19 30 0.57
ACGTcount: A:0.12, C:0.20, G:0.20, T:0.47
Consensus pattern (16 bp):
ATTGCGATTTTCTTCG
Found at i:25896 original size:19 final size:19
Alignment explanation
Indices: 25874--25922 Score: 98
Period size: 19 Copynumber: 2.6 Consensus size: 19
25864 GGTTTTCTCG
25874 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
25893 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
25912 TTGCGATTTTC
1 TTGCGATTTTC
25923 TCGTTGCGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.14, C:0.20, G:0.16, T:0.49
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:25898 original size:52 final size:52
Alignment explanation
Indices: 25836--25950 Score: 122
Period size: 52 Copynumber: 2.2 Consensus size: 52
25826 AACGAGAAAA
* * ***
25836 TCGCAATGCGAAATGAAAATCGCATTGCGGTTTTCTCGTTGCGATTTTCATT
1 TCGCATTGCGAAATGAAAATCGCATTGCGATTTTCTCGTTGCGATAGCCATT
** ** **
25888 TCGCATTGCGATTTTCATTTCGCATTGCGATTTTCTCGTTGCGATAGCCATT
1 TCGCATTGCGAAATGAAAATCGCATTGCGATTTTCTCGTTGCGATAGCCATT
*
25940 TCGCGTTGCGA
1 TCGCATTGCGA
25951 TAGTCTGTTT
Statistics
Matches: 51, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (52 bp):
TCGCATTGCGAAATGAAAATCGCATTGCGATTTTCTCGTTGCGATAGCCATT
Found at i:27883 original size:20 final size:19
Alignment explanation
Indices: 27852--27914 Score: 81
Period size: 19 Copynumber: 3.3 Consensus size: 19
27842 CTTAAAATCA
27852 CAACGCGAAATGACTATCG
1 CAACGCGAAATGACTATCG
*
27871 CAACGCGGAAATGGCTATCG
1 CAACGC-GAAATGACTATCG
* **
27891 CAATGCGAAATGAAAATCG
1 CAACGCGAAATGACTATCG
27910 CAACG
1 CAACG
27915 ACAAAATCGC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
19 20 0.54
20 17 0.46
ACGTcount: A:0.38, C:0.24, G:0.24, T:0.14
Consensus pattern (19 bp):
CAACGCGAAATGACTATCG
Found at i:27922 original size:14 final size:14
Alignment explanation
Indices: 27903--27960 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
27893 ATGCGAAATG
27903 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
27917 AAAATCGCAACGCGAA
1 AAAATCGCAA--CGAC
27933 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
27949 AAAATCGCAACG
1 AAAATCGCAACG
27961 CGAAACACAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.48, C:0.26, G:0.17, T:0.09
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:27945 original size:32 final size:33
Alignment explanation
Indices: 27887--27965 Score: 142
Period size: 32 Copynumber: 2.4 Consensus size: 33
27877 GGAAATGGCT
*
27887 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
27920 ATCGCAACGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
27952 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
27966 CACAAATCGC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
32 30 0.67
33 15 0.33
ACGTcount: A:0.47, C:0.24, G:0.19, T:0.10
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAAA
Found at i:27994 original size:19 final size:18
Alignment explanation
Indices: 27972--28033 Score: 69
Period size: 19 Copynumber: 3.6 Consensus size: 18
27962 GAAACACAAA
27972 TCGCATTGCGATTTTCATT
1 TCGCATTGCGA-TTTCATT
* *
27991 TCGCGTTGCGATTT--TG
1 TCGCATTGCGATTTCATT
28007 TCG--TTGCGATTTCATT
1 TCGCATTGCGATTTCATT
28023 TCGCATTGCGA
1 TCGCATTGCGA
28034 AATTGTCGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
14 9 0.25
16 8 0.22
18 9 0.25
19 10 0.28
ACGTcount: A:0.13, C:0.21, G:0.23, T:0.44
Consensus pattern (18 bp):
TCGCATTGCGATTTCATT
Found at i:28024 original size:32 final size:33
Alignment explanation
Indices: 27977--28068 Score: 141
Period size: 32 Copynumber: 2.8 Consensus size: 33
27967 ACAAATCGCA
* *
27977 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATATTGTCG
*
28010 TTGCGA-TTTCATTTCGCATTGCGAAATTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATATTGTCG
*
28042 TTGCAATTTTCATTTCGCATTGCGATA
1 TTGCGATTTTCATTTCGCATTGCGATA
28069 GCCATTTCCG
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
32 28 0.53
33 25 0.47
ACGTcount: A:0.16, C:0.18, G:0.21, T:0.45
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATATTGTCG
Found at i:28086 original size:20 final size:19
Alignment explanation
Indices: 28052--28106 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
28042 TTGCAATTTT
*
28052 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
28071 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
28091 CATTTTCGTGTTGCGA
1 CA-TTTCGCGTTGCGA
28107 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:28614 original size:18 final size:18
Alignment explanation
Indices: 28588--28632 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
28578 GTCGATCAGA
*
28588 TGATGGCTCTGGGTGAGG
1 TGATGGCTCTGGGCGAGG
*
28606 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTGGGCGAGG
28624 TGATGGCTC
1 TGATGGCTC
28633 CCGAAGTGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.13, C:0.16, G:0.44, T:0.27
Consensus pattern (18 bp):
TGATGGCTCTGGGCGAGG
Found at i:29978 original size:20 final size:20
Alignment explanation
Indices: 29953--29994 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
29943 ATAGTTTCTA
29953 AAAATGAAAATCGCAACACG
1 AAAATGAAAATCGCAACACG
** *
29973 AAAATGACTATCGCAACGCG
1 AAAATGAAAATCGCAACACG
29993 AA
1 AA
29995 TTCGACTATC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.50, C:0.21, G:0.17, T:0.12
Consensus pattern (20 bp):
AAAATGAAAATCGCAACACG
Found at i:30058 original size:19 final size:19
Alignment explanation
Indices: 30036--30086 Score: 102
Period size: 19 Copynumber: 2.7 Consensus size: 19
30026 GAAACTAAAA
30036 TCGCGTTGCGATTTGCATT
1 TCGCGTTGCGATTTGCATT
30055 TCGCGTTGCGATTTGCATT
1 TCGCGTTGCGATTTGCATT
30074 TCGCGTTGCGATT
1 TCGCGTTGCGATT
30087 CTCGGTTGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.10, C:0.22, G:0.27, T:0.41
Consensus pattern (19 bp):
TCGCGTTGCGATTTGCATT
Found at i:30310 original size:20 final size:21
Alignment explanation
Indices: 30285--30333 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
30275 TCTGAGAGAT
30285 GGAGAT-AGACGGATTTCGCC
1 GGAGATGAGACGGATTTCGCC
* *
30305 GGAGATGGGGACGGATTTCGTC
1 GGAGAT-GAGACGGATTTCGCC
*
30327 AGAGATG
1 GGAGATG
30334 GGTGAGAGAG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 6 0.25
21 1 0.04
22 17 0.71
ACGTcount: A:0.24, C:0.14, G:0.41, T:0.20
Consensus pattern (21 bp):
GGAGATGAGACGGATTTCGCC
Found at i:30319 original size:22 final size:22
Alignment explanation
Indices: 30292--30335 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
30282 GATGGAGATA
*
30292 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCAGAGATGGG
*
30314 GACGGATTTCGTCAGAGATGGG
1 GACGGATTTCGCCAGAGATGGG
30336 TGAGAGAGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.20, C:0.16, G:0.43, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCAGAGATGGG
Found at i:30549 original size:20 final size:20
Alignment explanation
Indices: 30523--30636 Score: 122
Period size: 20 Copynumber: 5.7 Consensus size: 20
30513 GATTATGTAT
30523 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
30543 AATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
30563 TATCGCGTTGCGAAAGTAAG
1 TATCGCGTTGCGAAAGTCAG
* ** *
30583 TATCTCGTTGCGATTTTGT-AT
1 TATCGCGTTGCGA--AAGTCAG
* *
30604 TATCGCATTGCGATAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
30624 TATCGCATTGCGA
1 TATCGCGTTGCGA
30637 TTTTCCCAAT
Statistics
Matches: 80, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
19 3 0.04
20 63 0.79
21 12 0.15
22 2 0.03
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTCAG
Found at i:30640 original size:41 final size:41
Alignment explanation
Indices: 30503--30638 Score: 159
Period size: 41 Copynumber: 3.3 Consensus size: 41
30493 CGCTTTGAAA
*
30503 ATCGCATTGCGATTATGTATTATCGCGTTGCGAAAGTCAGA
1 ATCGCATTGCGATTATGTATTATCGCGTTGCGAAAGTCAGT
* * * *
30544 ATCGCGTTGCGA--AAGTCAGTATCGCGTTGCGAAAGTAAGT
1 ATCGCATTGCGATTATGT-ATTATCGCGTTGCGAAAGTCAGT
* * * * *
30584 ATCTCGTTGCGATTTTGTATTATCGCATTGCGATAGTCAGT
1 ATCGCATTGCGATTATGTATTATCGCGTTGCGAAAGTCAGT
30625 ATCGCATTGCGATT
1 ATCGCATTGCGATT
30639 TTCCCAATTC
Statistics
Matches: 78, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
39 3 0.04
40 31 0.40
41 42 0.54
42 2 0.03
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (41 bp):
ATCGCATTGCGATTATGTATTATCGCGTTGCGAAAGTCAGT
Found at i:30655 original size:21 final size:21
Alignment explanation
Indices: 30626--30701 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
30616 ATAGTCAGTA
30626 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
30647 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
30667 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
*
30688 TCGCGTTGCGATTT
1 TCGCATTGCGATTT
30702 ACTTATTCGC
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 16 0.36
21 29 0.64
ACGTcount: A:0.16, C:0.25, G:0.18, T:0.41
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCCAAT
Found at i:30656 original size:41 final size:41
Alignment explanation
Indices: 30565--30699 Score: 139
Period size: 41 Copynumber: 3.3 Consensus size: 41
30555 AAAGTCAGTA
* * * ** *
30565 TCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTT-GTATT
1 TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* *
30605 ATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAAT
1 -TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* **
30647 TCGCGTTGCGAT-TTACTTATTCGCATTGCGATTTTCCCAAT
1 TCGCGTTGCGATAGTAAGTA-TCGCATTGCGATTTTCCCAAT
30688 TCGCGTTGCGAT
1 TCGCGTTGCGAT
30700 TTACTTATTC
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
40 3 0.04
41 74 0.94
42 2 0.03
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.38
Consensus pattern (41 bp):
TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
Found at i:30670 original size:20 final size:20
Alignment explanation
Indices: 30645--30711 Score: 89
Period size: 20 Copynumber: 3.3 Consensus size: 20
30635 GATTTTCCCA
30645 ATTCGCGTTGCGATTTACTT
1 ATTCGCGTTGCGATTTACTT
* * **
30665 ATTCGCATTGCGATTTTCCCA
1 ATTCGCGTTGCGA-TTTACTT
30686 ATTCGCGTTGCGATTTACTT
1 ATTCGCGTTGCGATTTACTT
30706 ATTCGC
1 ATTCGC
30712 ATTGTGAATT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
20 22 0.58
21 16 0.42
ACGTcount: A:0.16, C:0.24, G:0.18, T:0.42
Consensus pattern (20 bp):
ATTCGCGTTGCGATTTACTT
Found at i:30700 original size:41 final size:41
Alignment explanation
Indices: 30626--30715 Score: 180
Period size: 41 Copynumber: 2.2 Consensus size: 41
30616 ATAGTCAGTA
30626 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
30667 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
30708 TCGCATTG
1 TCGCATTG
30716 TGAATTCGGA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.17, C:0.24, G:0.18, T:0.41
Consensus pattern (41 bp):
TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
Found at i:42980 original size:20 final size:20
Alignment explanation
Indices: 42955--42997 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
42945 TCTAAGAGCA
*
42955 CATTTAGGACCATTTAGATG
1 CATTTAGGACCATATAGATG
* *
42975 CATTTAGGAGCATATAGTTG
1 CATTTAGGACCATATAGATG
42995 CAT
1 CAT
42998 GTGGTAGAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (20 bp):
CATTTAGGACCATATAGATG
Found at i:43268 original size:27 final size:27
Alignment explanation
Indices: 43227--43281 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
43217 TATTTTCACG
43227 GGATCTCTGACCATGACCGAGAAATCC
1 GGATCTCTGACCATGACCGAGAAATCC
*
43254 GGATCTCTGATCATGACCGAGAAATCC
1 GGATCTCTGACCATGACCGAGAAATCC
43281 G
1 G
43282 CCTGGATCAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.29, C:0.27, G:0.24, T:0.20
Consensus pattern (27 bp):
GGATCTCTGACCATGACCGAGAAATCC
Found at i:47910 original size:20 final size:20
Alignment explanation
Indices: 47885--47927 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
47875 TCTAAGAGCA
*
47885 CATTTAGGACCATTTAGATG
1 CATTTAGGACCATATAGATG
* *
47905 CATTTAGGAGCATATAGTTG
1 CATTTAGGACCATATAGATG
47925 CAT
1 CAT
47928 GTGGTGGAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (20 bp):
CATTTAGGACCATATAGATG
Found at i:48198 original size:27 final size:27
Alignment explanation
Indices: 48157--48210 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
48147 TATTTTCATG
48157 GGATCTCTGACCATGACCGAGAAATCC
1 GGATCTCTGACCATGACCGAGAAATCC
* *
48184 GGATCTTTGATCATGACCGAGAAATCC
1 GGATCTCTGACCATGACCGAGAAATCC
48211 ACCTGGATCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (27 bp):
GGATCTCTGACCATGACCGAGAAATCC
Found at i:50679 original size:16 final size:16
Alignment explanation
Indices: 50649--50679 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
50639 AATATTGAAA
*
50649 CTTGAACTCGAAAAAG
1 CTTGAACTCAAAAAAG
50665 CTTGAACTCAAAAAA
1 CTTGAACTCAAAAAA
50680 ATAATTTAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.19, G:0.13, T:0.19
Consensus pattern (16 bp):
CTTGAACTCAAAAAAG
Found at i:55205 original size:2 final size:2
Alignment explanation
Indices: 55200--55226 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
55190 GACAAGTGTA
55200 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
55227 CAGTGTGCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:61301 original size:183 final size:182
Alignment explanation
Indices: 60889--61460 Score: 784
Period size: 182 Copynumber: 3.2 Consensus size: 182
60879 AACGCTACCA
*
60889 GATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACACTTTCT-GAA-TTGAAA-AG-AGA
1 GATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACACTTT-TGGAATTTAAAAGAGAAGA
* ** * *
60950 AGTTATAGCGCCTAAAAAGTGTCGATACTTTATGAAAATATATCGTTCCATAACAATATAAC-AG
65 AGTTATAGCGCCTATAAAGTGTCGATACTTTAAAAAAATGTATCGATCCATAACAATATAACAAG
* *
61014 CTAAAAATGTGACAAAACCA-GTCTCAAAATGACAAAACCGGTAAAGAA-CTATCG
130 C-AAAAATATGACAAAA-CAGGTCTCAAAATGACAAAACCGGTAAA-AAGATATCG
* *
61068 GATATGTTGAAAGTGTCGATACTTTAATATAAGTATCGACATTTTTGGAATTTAAAAGAGAAGAA
1 GATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAA
61133 GTTATAGCGCCTATAAAGTGTCGATACTTTAAAAAAATGTATCGATCCATAACAATATAACAAGC
66 GTTATAGCGCCTATAAAGTGTCGATACTTTAAAAAAATGTATCGATCCATAACAATATAACAAGC
* *
61198 AAAAATATGACAAAATAGGTCTCAAAAATGACAAAACCGGTAAAAAGATGTCG
131 AAAAATATGACAAAACAGGTCTC-AAAATGACAAAACCGGTAAAAAGATATCG
*
61251 GATATGTTGAAAGTGTCGATAATTTAATATAAGTATCAACACTTTTGGAATTTAAAAGAGAAGAA
1 GATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAA
* * * * * *
61316 GTTATAGCGCCTATAAAGGGTTGATACTTT-AAAAAATGTATCGATTCATAATAATATAACAGGT
66 GTTATAGCGCCTATAAAGTGTCGATACTTTAAAAAAATGTATCGATCCATAACAATATAACAAGC
* * * ** *
61380 AAAAATATGACAAAACCGGTCTCAACATGACAAAACCGATAAAGCGCA-ACCG
131 AAAAATATGACAAAACAGGTCTCAAAATGACAAAACCGGTAAAAAG-ATATCG
* *
61432 GATATGTTGAAAGTTTCGATACTTTAATA
1 GATATGTTGAAAGTGTCGATAATTTAATA
61461 AGTACACGTA
Statistics
Matches: 353, Mismatches: 31, Indels: 16
0.88 0.08 0.04
Matches are distributed among these distances:
178 1 0.00
179 46 0.13
180 5 0.01
181 51 0.14
182 133 0.38
183 117 0.33
ACGTcount: A:0.43, C:0.13, G:0.17, T:0.27
Consensus pattern (182 bp):
GATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAA
GTTATAGCGCCTATAAAGTGTCGATACTTTAAAAAAATGTATCGATCCATAACAATATAACAAGC
AAAAATATGACAAAACAGGTCTCAAAATGACAAAACCGGTAAAAAGATATCG
Found at i:61885 original size:19 final size:19
Alignment explanation
Indices: 61863--61938 Score: 89
Period size: 19 Copynumber: 3.9 Consensus size: 19
61853 CTTTTATTTA
61863 ATATTATAGGTAAAAAATG
1 ATATTATAGGTAAAAAATG
61882 ATATTATAGGTAAGAAAATG
1 ATATTATAGGTAA-AAAATG
* * * *
61902 ATATTACATGTAGAAAGTG
1 ATATTATAGGTAAAAAATG
* *
61921 ATATTCTAGGTAGAAAAT
1 ATATTATAGGTAAAAAAT
61939 AAATATGGAT
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
19 32 0.67
20 16 0.33
ACGTcount: A:0.47, C:0.03, G:0.18, T:0.32
Consensus pattern (19 bp):
ATATTATAGGTAAAAAATG
Found at i:61906 original size:39 final size:38
Alignment explanation
Indices: 61863--61938 Score: 98
Period size: 39 Copynumber: 2.0 Consensus size: 38
61853 CTTTTATTTA
*
61863 ATATTATAGGTAAAAAATGATATTATAGGTAAGAAAATG
1 ATATTACAGGTAAAAAATGATATTATAGGT-AGAAAATG
* * * *
61902 ATATTACATGTAGAAAGTGATATTCTAGGTAGAAAAT
1 ATATTACAGGTAAAAAATGATATTATAGGTAGAAAAT
61939 AAATATGGAT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
38 7 0.22
39 25 0.78
ACGTcount: A:0.47, C:0.03, G:0.18, T:0.32
Consensus pattern (38 bp):
ATATTACAGGTAAAAAATGATATTATAGGTAGAAAATG
Found at i:61978 original size:97 final size:97
Alignment explanation
Indices: 61807--61989 Score: 276
Period size: 97 Copynumber: 1.9 Consensus size: 97
61797 TTTGAGACCG
* ** * * *
61807 ATTATATGTAGAAAGTGATATTCTAGGTAGATGATAAATATCAATACTTTTATTTAATATTATAG
1 ATTACATGTAGAAAGTGATATTCTAGGTAGAAAATAAATATCAATACCTGTATATAATATTATAG
61872 GTAAAAAATGATATTATAGGTAAGAAAATGAT
66 GTAAAAAATGATATTATAGGTAAGAAAATGAT
**
61904 ATTACATGTAGAAAGTGATATTCTAGGTAGAAAATAAATATGGATACCTGTATATAATATTATAG
1 ATTACATGTAGAAAGTGATATTCTAGGTAGAAAATAAATATCAATACCTGTATATAATATTATAG
* *
61969 GTAGAAAATGATATTTTAGGT
66 GTAAAAAATGATATTATAGGT
61990 TGTATAAATG
Statistics
Matches: 76, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
97 76 1.00
ACGTcount: A:0.43, C:0.04, G:0.17, T:0.36
Consensus pattern (97 bp):
ATTACATGTAGAAAGTGATATTCTAGGTAGAAAATAAATATCAATACCTGTATATAATATTATAG
GTAAAAAATGATATTATAGGTAAGAAAATGAT
Found at i:63295 original size:22 final size:22
Alignment explanation
Indices: 63244--63299 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 22
63234 ATGTTTTTGT
*
63244 TTTTTTTATATAAAATGATAGTA
1 TTTTATTATATAAAATGATAG-A
*
63267 TAGTTATTATATAAAATGATA-A
1 T-TTTATTATATAAAATGATAGA
63289 CTTTTATTATA
1 -TTTTATTATA
63300 AATGTAGGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
22 9 0.32
23 2 0.07
24 17 0.61
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (22 bp):
TTTTATTATATAAAATGATAGA
Found at i:67494 original size:23 final size:23
Alignment explanation
Indices: 67459--67515 Score: 78
Period size: 23 Copynumber: 2.4 Consensus size: 23
67449 TTTATGAGAA
*
67459 AATATGTTAATATAAGCGTTACCT
1 AATATATT-ATATAAGCGTTACCT
*
67483 ATTATATTATATAAGCGTTACCT
1 AATATATTATATAAGCGTTACCT
*
67506 AATATGTTAT
1 AATATATTAT
67516 TATACTTGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 23 0.79
24 6 0.21
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.42
Consensus pattern (23 bp):
AATATATTATATAAGCGTTACCT
Found at i:67572 original size:23 final size:23
Alignment explanation
Indices: 67552--67616 Score: 103
Period size: 23 Copynumber: 2.8 Consensus size: 23
67542 TACTTATTTT
**
67552 ATTATATAAGCGCTACCTATTAC
1 ATTATATAAGTACTACCTATTAC
*
67575 ATTATATAAGTACTATCTATTAC
1 ATTATATAAGTACTACCTATTAC
67598 ATTATATAAGTACTACCTA
1 ATTATATAAGTACTACCTA
67617 ATATGACTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.38, C:0.17, G:0.06, T:0.38
Consensus pattern (23 bp):
ATTATATAAGTACTACCTATTAC
Found at i:77868 original size:12 final size:11
Alignment explanation
Indices: 77851--77886 Score: 54
Period size: 12 Copynumber: 3.1 Consensus size: 11
77841 TAAAATAACA
77851 ATAAATAATAGT
1 ATAAATAATA-T
77863 ATAAATAATAT
1 ATAAATAATAT
77874 ATAATATAATAT
1 ATAA-ATAATAT
77886 A
1 A
77887 ATACGAACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 5 0.22
12 18 0.78
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (11 bp):
ATAAATAATAT
Found at i:77945 original size:29 final size:26
Alignment explanation
Indices: 77896--77948 Score: 79
Period size: 29 Copynumber: 1.9 Consensus size: 26
77886 AATACGAACT
77896 ATATATTTATTTAAAAACTATATATC
1 ATATATTTATTTAAAAACTATATATC
77922 ATATATTATATTTTCAAAAACTATATA
1 ATATATT-TA-TTT-AAAAACTATATA
77949 ATATGTTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 7 0.29
27 2 0.08
28 3 0.12
29 12 0.50
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.45
Consensus pattern (26 bp):
ATATATTTATTTAAAAACTATATATC
Found at i:77946 original size:27 final size:25
Alignment explanation
Indices: 77896--77952 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 25
77886 AATACGAACT
*
77896 ATATATTTATTTAAAAACTATATATC
1 ATATATTTATTTAAAAAC-ATATATA
77922 ATATATTATATTTTCAAAAAC-TATATA
1 ATATATT-TA-TTT-AAAAACATATATA
77949 ATAT
1 ATAT
77953 GTTTTCAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 7 0.26
27 11 0.41
28 3 0.11
29 6 0.22
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.46
Consensus pattern (25 bp):
ATATATTTATTTAAAAACATATATA
Found at i:77947 original size:22 final size:22
Alignment explanation
Indices: 77922--77970 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
77912 ACTATATATC
*
77922 ATATATTATATTTTCAAAAACT
1 ATATAATATATTTTCAAAAACT
* *
77944 ATATAATATGTTTTCAAAAATT
1 ATATAATATATTTTCAAAAACT
77966 ATATA
1 ATATA
77971 CATTATATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (22 bp):
ATATAATATATTTTCAAAAACT
Found at i:78005 original size:40 final size:38
Alignment explanation
Indices: 77954--78151 Score: 158
Period size: 37 Copynumber: 5.3 Consensus size: 38
77944 ATATAATATG
*
77954 TTTTCAAAAATTATATACATTATATATGTTTTGAAAAACCA
1 TTTTCAAAAATTATAT--A-TATATATGTTTTCAAAAACCA
**
77995 TTTT-AAAAATTATATATATATATGTTTTCAAAATA-TG
1 TTTTCAAAAATTATATATATATATGTTTTCAAAA-ACCA
* * * **
78032 TTTTC-AAAACTATAT-TATACACGTTTTCAAAAACTTT
1 TTTTCAAAAATTATATATATATATGTTTTCAAAAAC-CA
* * * *
78069 TTTTTAAAAACTATATAT-TATATGTTTTCAAAAATCG
1 TTTTCAAAAATTATATATATATATGTTTTCAAAAACCA
** * *
78106 TTTTTTAAAACTATATAT-TATATGTTTTCAAAAA-TA
1 TTTTCAAAAATTATATATATATATGTTTTCAAAAACCA
78142 TTTTCAAAAA
1 TTTTCAAAAA
78152 CTATCCTATA
Statistics
Matches: 133, Mismatches: 18, Indels: 17
0.79 0.11 0.10
Matches are distributed among these distances:
35 1 0.01
36 23 0.17
37 67 0.50
38 26 0.20
39 1 0.01
40 11 0.08
41 4 0.03
ACGTcount: A:0.42, C:0.09, G:0.04, T:0.45
Consensus pattern (38 bp):
TTTTCAAAAATTATATATATATATGTTTTCAAAAACCA
Found at i:78022 original size:37 final size:37
Alignment explanation
Indices: 77974--78164 Score: 187
Period size: 37 Copynumber: 5.1 Consensus size: 37
77964 TTATATACAT
* ** *
77974 TATATATGTTTTGAAAAACCATTTTAAAAATTATATA
1 TATATATGTTTTCAAAAACTTTTTTAAAAACTATATA
* *
78011 TATATATGTTTTCAAAATA-TGTTTTCAAAACTATAT-
1 TATATATGTTTTCAAAA-ACTTTTTTAAAAACTATATA
* *
78047 TATACACGTTTTCAAAAACTTTTTTTTAAAAACTATATA
1 TATATATGTTTTCAAAAAC--TTTTTTAAAAACTATATA
78086 T-TATATGTTTTCAAAAATCGTTTTTT-AAAACTATATA
1 TATATATGTTTTCAAAAA-C-TTTTTTAAAAACTATATA
* *
78123 T-TATATGTTTTCAAAAA-TATTTTCAAAAACTATCCTA
1 TATATATGTTTTCAAAAACT-TTTTTAAAAACTAT-ATA
78160 TATAT
1 TATAT
78165 CTTCAAAAAA
Statistics
Matches: 130, Mismatches: 14, Indels: 19
0.80 0.09 0.12
Matches are distributed among these distances:
34 1 0.01
35 5 0.04
36 23 0.18
37 60 0.46
38 39 0.30
39 2 0.02
ACGTcount: A:0.41, C:0.09, G:0.04, T:0.46
Consensus pattern (37 bp):
TATATATGTTTTCAAAAACTTTTTTAAAAACTATATA
Found at i:78032 original size:13 final size:13
Alignment explanation
Indices: 78014--78040 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
78004 TTATATATAT
78014 ATATGTTTTCAAA
1 ATATGTTTTCAAA
78027 ATATGTTTTCAAA
1 ATATGTTTTCAAA
78040 A
1 A
78041 CTATATTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.44
Consensus pattern (13 bp):
ATATGTTTTCAAA
Found at i:78116 original size:75 final size:73
Alignment explanation
Indices: 77995--78164 Score: 202
Period size: 75 Copynumber: 2.3 Consensus size: 73
77985 TGAAAAACCA
*
77995 TTTTAAAAATTATATATATATATGTTTTCAAAATATGTTTTCAAAACTATAT-TATACACGTTTT
1 TTTTAAAAACTATATATATATATGTTTTCAAAATATGTTTTCAAAACTATATAT-TACACGTTTT
*
78059 CAAAAACTTTT
65 CAAAAA--TAT
* * *
78070 TTTTAAAAACTATATAT-TATATGTTTTCAAAA-ATCGTTTTTTAAAACTATATATTATATGTTT
1 TTTTAAAAACTATATATATATATGTTTTCAAAATAT-G-TTTTCAAAACTATATATTACACGTTT
78133 TCAAAAATAT
64 TCAAAAATAT
* *
78143 TTTCAAAAACTATCCTATATAT
1 TTTTAAAAACTAT-ATATATAT
78165 CTTCAAAAAA
Statistics
Matches: 83, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
73 16 0.19
74 19 0.23
75 47 0.57
76 1 0.01
ACGTcount: A:0.41, C:0.09, G:0.04, T:0.46
Consensus pattern (73 bp):
TTTTAAAAACTATATATATATATGTTTTCAAAATATGTTTTCAAAACTATATATTACACGTTTTC
AAAAATAT
Found at i:78217 original size:16 final size:16
Alignment explanation
Indices: 78174--78226 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
78164 TCTTCAAAAA
78174 ATATATATATTA-TAT
1 ATATATATATTATTAT
* * *
78189 ATTTTTTAAATTATTAT
1 A-TATATATATTATTAT
*
78206 ATATATATATTATCAT
1 ATATATATATTATTAT
78222 ATATA
1 ATATA
78227 CTAAATAAGT
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
15 1 0.03
16 24 0.83
17 4 0.14
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (16 bp):
ATATATATATTATTAT
Found at i:82857 original size:22 final size:23
Alignment explanation
Indices: 82829--82877 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
82819 TTAATTTCTG
82829 TTTGGGTGCTA-TTTGTGTAAA-A
1 TTTGGGTGCTAGTTT-TGTAAATA
*
82851 TTTGGGTGTTAGTTTTGTAAATA
1 TTTGGGTGCTAGTTTTGTAAATA
82874 TTTG
1 TTTG
82878 AAGAAAGTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 16 0.67
23 8 0.33
ACGTcount: A:0.20, C:0.02, G:0.27, T:0.51
Consensus pattern (23 bp):
TTTGGGTGCTAGTTTTGTAAATA
Found at i:85382 original size:24 final size:24
Alignment explanation
Indices: 85355--85413 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 24
85345 GAATTCATTC
*
85355 TGATTTCTGATCTGGATTCTGTTA
1 TGATTTCTGATCTGAATTCTGTTA
* * *
85379 TGATATCTTATCTGAATTCTGTTT
1 TGATTTCTGATCTGAATTCTGTTA
85403 TGATTTCTGAT
1 TGATTTCTGAT
85414 ATCTCCGTTT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.19, C:0.12, G:0.17, T:0.53
Consensus pattern (24 bp):
TGATTTCTGATCTGAATTCTGTTA
Found at i:87358 original size:13 final size:13
Alignment explanation
Indices: 87340--87365 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
87330 ATATCTTGGA
87340 GTGTATCGGTACC
1 GTGTATCGGTACC
87353 GTGTATCGGTACC
1 GTGTATCGGTACC
87366 TCCCTTTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.31, T:0.31
Consensus pattern (13 bp):
GTGTATCGGTACC
Found at i:96729 original size:28 final size:28
Alignment explanation
Indices: 96689--96746 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
96679 ATTTTCACCT
96689 AACTAAATTGATGTAAGCAATGACATCA
1 AACTAAATTGATGTAAGCAATGACATCA
96717 AACTAAATTGATGTAAGCAATGACATCA
1 AACTAAATTGATGTAAGCAATGACATCA
96745 AA
1 AA
96747 TTAATTTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.48, C:0.14, G:0.14, T:0.24
Consensus pattern (28 bp):
AACTAAATTGATGTAAGCAATGACATCA
Found at i:101298 original size:29 final size:29
Alignment explanation
Indices: 101256--101314 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
101246 ATTTTCACCT
101256 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
101285 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
101314 A
1 A
101315 TTAATTTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (29 bp):
AACTAAATTGATGTAAGCAATGACATCAA
Found at i:106507 original size:17 final size:18
Alignment explanation
Indices: 106473--106513 Score: 66
Period size: 17 Copynumber: 2.3 Consensus size: 18
106463 TAATTTTTTA
106473 CCAAAAAAACAAAAAAAG
1 CCAAAAAAACAAAAAAAG
*
106491 GCAAAAAAAC-AAAAAAG
1 CCAAAAAAACAAAAAAAG
106508 CCAAAA
1 CCAAAA
106514 TTTAAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.76, C:0.17, G:0.07, T:0.00
Consensus pattern (18 bp):
CCAAAAAAACAAAAAAAG
Found at i:116758 original size:17 final size:17
Alignment explanation
Indices: 116736--116769 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
116726 GTTCAAATTT
*
116736 TCAACCAAGTTTACATC
1 TCAACCAAGTCTACATC
116753 TCAACCAAGTCTACATC
1 TCAACCAAGTCTACATC
116770 CACTACCTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.32, G:0.06, T:0.26
Consensus pattern (17 bp):
TCAACCAAGTCTACATC
Found at i:119395 original size:21 final size:22
Alignment explanation
Indices: 119365--119405 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
119355 CTATAACAGA
119365 GAGTACCGGTACT-CCTTTGAT
1 GAGTACCGGTACTACCTTTGAT
*
119386 GAGTATCGGTACTACCTTTG
1 GAGTACCGGTACTACCTTTG
119406 TAATTTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.34
Consensus pattern (22 bp):
GAGTACCGGTACTACCTTTGAT
Found at i:120093 original size:16 final size:16
Alignment explanation
Indices: 120072--120112 Score: 55
Period size: 19 Copynumber: 2.4 Consensus size: 16
120062 TGATCTTCGA
120072 TTAATATTATTTTTAT
1 TTAATATTATTTTTAT
120088 TTAATAAAATTATTTTTAT
1 TTAAT---ATTATTTTTAT
120107 TTAATA
1 TTAATA
120113 AAATTATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
16 6 0.27
19 16 0.73
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTAATATTATTTTTAT
Found at i:120101 original size:19 final size:19
Alignment explanation
Indices: 120077--120126 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
120067 TTCGATTAAT
120077 ATTATTTTTATTTAATAAA
1 ATTATTTTTATTTAATAAA
120096 ATTATTTTTATTTAATAAA
1 ATTATTTTTATTTAATAAA
*
120115 ATTATATTTATT
1 ATTATTTTTATT
120127 GTGAAAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
ATTATTTTTATTTAATAAA
Found at i:130294 original size:11 final size:11
Alignment explanation
Indices: 130278--130307 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
130268 CAAATTCAAC
130278 GAAATTATAAA
1 GAAATTATAAA
130289 GAAATTATAAA
1 GAAATTATAAA
130300 GAAATTAT
1 GAAATTAT
130308 GCTTACCTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.30
Consensus pattern (11 bp):
GAAATTATAAA
Found at i:132337 original size:19 final size:20
Alignment explanation
Indices: 132310--132347 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
132300 AATTAAACAT
*
132310 TAAATTTTA-ATAATAAAAA
1 TAAAATTTAGATAATAAAAA
*
132329 TAAAATTTAGATATTAAAA
1 TAAAATTTAGATAATAAAA
132348 CATATAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (20 bp):
TAAAATTTAGATAATAAAAA
Found at i:133120 original size:19 final size:19
Alignment explanation
Indices: 133093--133129 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
133083 AAATGACCAA
133093 ATAAATCGCAATGCGATCG
1 ATAAATCGCAATGCGATCG
*
133112 ATAATTCGCAATGCGATC
1 ATAAATCGCAATGCGATC
133130 TCTGGTATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (19 bp):
ATAAATCGCAATGCGATCG
Found at i:133223 original size:22 final size:22
Alignment explanation
Indices: 133172--133230 Score: 66
Period size: 21 Copynumber: 2.7 Consensus size: 22
133162 ACGCGATTCT
133172 GACTATCGCATTGCGATTTCCC
1 GACTATCGCATTGCGATTTCCC
* * * *
133194 AAAT-TCGCGTTGCGATTTTCC
1 GACTATCGCATTGCGATTTCCC
*
133215 GACTATCGCAATGCGA
1 GACTATCGCATTGCGA
133231 ATATGTAAAT
Statistics
Matches: 28, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
21 17 0.61
22 11 0.39
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (22 bp):
GACTATCGCATTGCGATTTCCC
Found at i:133311 original size:20 final size:20
Alignment explanation
Indices: 133215--133348 Score: 128
Period size: 20 Copynumber: 6.7 Consensus size: 20
133205 GCGATTTTCC
*
133215 GACTATCGCAATGCGAATAT
1 GACTATCGCAATGCGATTAT
* *
133235 GTA-AATCGCAATGCGAGTAT
1 G-ACTATCGCAATGCGATTAT
* * *
133255 GGCTATCGCAACGCGAATAT
1 GACTATCGCAATGCGATTAT
*
133275 GTA-AATCGCAATGCGATTAT
1 G-ACTATCGCAATGCGATTAT
* *
133295 TACTATCGCAATGCGATTCT
1 GACTATCGCAATGCGATTAT
* *
133315 GACTATCGCAACGCGATTCT
1 GACTATCGCAATGCGATTAT
*
133335 GACTGTCGCAATGC
1 GACTATCGCAATGC
133349 TGAATTTCAA
Statistics
Matches: 93, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
19 1 0.01
20 91 0.98
21 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (20 bp):
GACTATCGCAATGCGATTAT
Found at i:133323 original size:40 final size:40
Alignment explanation
Indices: 133215--133353 Score: 163
Period size: 40 Copynumber: 3.5 Consensus size: 40
133205 GCGATTTTCC
*
133215 GACTATCGCAATGCGAATATGTAAATCGCAATGCGAGTAT
1 GACTATCGCAATGCGAATATGTAAATCGCAATGCGATTAT
* *
133255 GGCTATCGCAACGCGAATATGTAAATCGCAATGCGATTAT
1 GACTATCGCAATGCGAATATGTAAATCGCAATGCGATTAT
* * * * * *
133295 TACTATCGCAATGCGATTCTG-ACTATCGCAACGCGATTCT
1 GACTATCGCAATGCGAATATGTA-AATCGCAATGCGATTAT
*
133335 GACTGTCGCAATGCTGAAT
1 GACTATCGCAATGC-GAAT
133354 TTCAAATTCG
Statistics
Matches: 83, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 79 0.95
41 3 0.04
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (40 bp):
GACTATCGCAATGCGAATATGTAAATCGCAATGCGATTAT
Found at i:133344 original size:60 final size:60
Alignment explanation
Indices: 133215--133353 Score: 156
Period size: 60 Copynumber: 2.3 Consensus size: 60
133205 GCGATTTTCC
*
133215 GACTATCGCAATGCGAATATGTAAATCGCAATGCGAGTATGGCTATCGCAACGCGAATAT
1 GACTATCGCAATGCGAATATGTAAATCGCAATGCGAGTATGACTATCGCAACGCGAATAT
* * * * * * *
133275 GTA-AATCGCAATGCGATTAT-TACTATCGCAATGCGATTCTGACTATCGCAACGCGATTCT
1 G-ACTATCGCAATGCGAATATGTA-AATCGCAATGCGAGTATGACTATCGCAACGCGAATAT
*
133335 GACTGTCGCAATGCTGAAT
1 GACTATCGCAATGC-GAAT
133354 TTCAAATTCG
Statistics
Matches: 64, Mismatches: 11, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
59 3 0.05
60 57 0.89
61 4 0.06
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (60 bp):
GACTATCGCAATGCGAATATGTAAATCGCAATGCGAGTATGACTATCGCAACGCGAATAT
Found at i:134201 original size:24 final size:24
Alignment explanation
Indices: 134167--134244 Score: 129
Period size: 24 Copynumber: 3.2 Consensus size: 24
134157 GTATTCGAAA
*
134167 TTTGATATTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
134191 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
134215 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
134239 TTTGAT
1 TTTGAT
134245 GATGTTTCAG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 51 1.00
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.38
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:134460 original size:14 final size:14
Alignment explanation
Indices: 134431--134467 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
134421 AGAAGAAGAA
134431 GAAGAAGAAATCCCC
1 GAAGAA-AAATCCCC
*
134446 GAAGAAAAGTCCCC
1 GAAGAAAAATCCCC
134460 GAAGAAAA
1 GAAGAAAA
134468 TGCCACGGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.51, C:0.22, G:0.22, T:0.05
Consensus pattern (14 bp):
GAAGAAAAATCCCC
Found at i:136519 original size:12 final size:12
Alignment explanation
Indices: 136502--136532 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
136492 CAAGCAAAAG
136502 GCAATCAAAATC
1 GCAATCAAAATC
136514 GCAATCAAAATC
1 GCAATCAAAATC
*
136526 CCAATCA
1 GCAATCA
136533 CAACCGGCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.48, C:0.29, G:0.06, T:0.16
Consensus pattern (12 bp):
GCAATCAAAATC
Found at i:136735 original size:20 final size:20
Alignment explanation
Indices: 136710--137030 Score: 253
Period size: 20 Copynumber: 16.7 Consensus size: 20
136700 CACATTCATT
*
136710 TGACTATCGCAACGTGAATA
1 TGACTATCGCAACGCGAATA
136730 TGACTATCGCAACGCGAATA
1 TGACTATCGCAACGCGAATA
* *
136750 TGACTATCGCAACGTGAATT
1 TGACTATCGCAACGCGAATA
*
136770 TGACTATCGC-ACG-G--GA
1 TGACTATCGCAACGCGAATA
* *
136786 T-A--ATCGCAATGCGAAAA
1 TGACTATCGCAACGCGAATA
*
136803 TGACTATCGCAACGCGAATT
1 TGACTATCGCAACGCGAATA
136823 TGACTATCGCAACTG-G---A
1 TGACTATCGCAAC-GCGAATA
* * *
136840 T-A--ATCGCAATGCAAAAA
1 TGACTATCGCAACGCGAATA
*
136857 TGACTATCGCAACGCGAAAA
1 TGACTATCGCAACGCGAATA
*
136877 TGACTATCGCAACGCGAAAA
1 TGACTATCGCAACGCGAATA
*
136897 TGACTATCGCAACGCAAATA
1 TGACTATCGCAACGCGAATA
* * *
136917 TGACTATCGTAATGCGAATT
1 TGACTATCGCAACGCGAATA
* * *
136937 TAAC-CT-GCAGAATCGCGAATT
1 TGACTATCGC--AA-CGCGAATA
136958 TGACTATCGCAACGCGAA-A
1 TGACTATCGCAACGCGAATA
* * *
136977 TGACAATCGCAACGTGAATT
1 TGACTATCGCAACGCGAATA
* * * *
136997 TGATTATCGTAACGGGAATT
1 TGACTATCGCAACGCGAATA
137017 TGACTATCGCAACG
1 TGACTATCGCAACG
137031 AGAAAATTGC
Statistics
Matches: 243, Mismatches: 37, Indels: 42
0.75 0.11 0.13
Matches are distributed among these distances:
13 6 0.02
14 9 0.04
15 2 0.01
16 2 0.01
17 5 0.02
18 4 0.02
19 20 0.08
20 179 0.74
21 13 0.05
22 1 0.00
23 2 0.01
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.23
Consensus pattern (20 bp):
TGACTATCGCAACGCGAATA
Found at i:136865 original size:54 final size:54
Alignment explanation
Indices: 136735--136890 Score: 242
Period size: 54 Copynumber: 2.9 Consensus size: 54
136725 GAATATGACT
* * *
136735 ATCGCAACGCGAATATGACTATCGCAACGTGAATTTGACTATCGC-ACGGGATA
1 ATCGCAATGCGAAAATGACTATCGCAACGCGAATTTGACTATCGCAACGGGATA
*
136788 ATCGCAATGCGAAAATGACTATCGCAACGCGAATTTGACTATCGCAACTGGATA
1 ATCGCAATGCGAAAATGACTATCGCAACGCGAATTTGACTATCGCAACGGGATA
* **
136842 ATCGCAATGCAAAAATGACTATCGCAACGCGAAAATGACTATCGCAACG
1 ATCGCAATGCGAAAATGACTATCGCAACGCGAATTTGACTATCGCAACG
136891 CGAAAATGAC
Statistics
Matches: 94, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
53 42 0.45
54 52 0.55
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.21
Consensus pattern (54 bp):
ATCGCAATGCGAAAATGACTATCGCAACGCGAATTTGACTATCGCAACGGGATA
Found at i:137204 original size:36 final size:34
Alignment explanation
Indices: 137164--137243 Score: 114
Period size: 30 Copynumber: 2.4 Consensus size: 34
137154 TCAACTTTTA
137164 ATCAATTAAACAAGCACAAATAAGAATTATTTACAC
1 ATCAATTAAACAA--ACAAATAAGAATTATTTACAC
137200 ATCAATT----AAACAAATAAGAATTATTTACAC
1 ATCAATTAAACAAACAAATAAGAATTATTTACAC
137230 ATCAATTAAACAAA
1 ATCAATTAAACAAA
137244 TCGACTCTTA
Statistics
Matches: 40, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
30 28 0.70
32 2 0.05
34 3 0.08
36 7 0.17
ACGTcount: A:0.55, C:0.15, G:0.04, T:0.26
Consensus pattern (34 bp):
ATCAATTAAACAAACAAATAAGAATTATTTACAC
Found at i:137213 original size:30 final size:30
Alignment explanation
Indices: 137179--137244 Score: 132
Period size: 30 Copynumber: 2.2 Consensus size: 30
137169 TTAAACAAGC
137179 ACAAATAAGAATTATTTACACATCAATTAA
1 ACAAATAAGAATTATTTACACATCAATTAA
137209 ACAAATAAGAATTATTTACACATCAATTAA
1 ACAAATAAGAATTATTTACACATCAATTAA
137239 ACAAAT
1 ACAAAT
137245 CGACTCTTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.55, C:0.14, G:0.03, T:0.29
Consensus pattern (30 bp):
ACAAATAAGAATTATTTACACATCAATTAA
Found at i:138726 original size:42 final size:42
Alignment explanation
Indices: 138619--138730 Score: 111
Period size: 42 Copynumber: 2.7 Consensus size: 42
138609 TCTAGAATGT
* * *
138619 TGGGAG-GGACCTCTTCAACGATGACAGTGACCTCTTGAACGG
1 TGGGAGAGG-CCTCTTGAACGATGACAGGGACCTCTTGAACGA
* * ** * *
138661 TGGGAGGGGACTCTTGAGTGATGATAGGGGCCTCTTGAACGA
1 TGGGAGAGGCCTCTTGAACGATGACAGGGACCTCTTGAACGA
138703 TAGGG-GAGGCCTCTTGAACGATGACAGG
1 T-GGGAGAGGCCTCTTGAACGATGACAGG
138731 TGAGTCGGGC
Statistics
Matches: 55, Mismatches: 13, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
42 50 0.91
43 5 0.09
ACGTcount: A:0.23, C:0.19, G:0.37, T:0.21
Consensus pattern (42 bp):
TGGGAGAGGCCTCTTGAACGATGACAGGGACCTCTTGAACGA
Found at i:139252 original size:20 final size:20
Alignment explanation
Indices: 139216--139301 Score: 140
Period size: 20 Copynumber: 4.4 Consensus size: 20
139206 GAAACTTAAA
139216 ATCGCAACACG--AATGACT
1 ATCGCAACACGAAAATGACT
139234 ATCGCAACACGAAAATGACT
1 ATCGCAACACGAAAATGACT
*
139254 ATCGCAACGCGAAAATGACT
1 ATCGCAACACGAAAATGACT
*
139274 ATCGCAACGCGAAAATGACT
1 ATCGCAACACGAAAATGACT
139294 ATCGCAAC
1 ATCGCAAC
139302 GAGGGAATCG
Statistics
Matches: 65, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
18 11 0.17
20 54 0.83
ACGTcount: A:0.41, C:0.27, G:0.17, T:0.15
Consensus pattern (20 bp):
ATCGCAACACGAAAATGACT
Found at i:139302 original size:20 final size:20
Alignment explanation
Indices: 139227--139302 Score: 143
Period size: 20 Copynumber: 3.8 Consensus size: 20
139217 TCGCAACACG
*
139227 AATGACTATCGCAACACGAA
1 AATGACTATCGCAACGCGAA
139247 AATGACTATCGCAACGCGAA
1 AATGACTATCGCAACGCGAA
139267 AATGACTATCGCAACGCGAA
1 AATGACTATCGCAACGCGAA
139287 AATGACTATCGCAACG
1 AATGACTATCGCAACG
139303 AGGGAATCGC
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 55 1.00
ACGTcount: A:0.41, C:0.25, G:0.18, T:0.16
Consensus pattern (20 bp):
AATGACTATCGCAACGCGAA
Found at i:139399 original size:20 final size:20
Alignment explanation
Indices: 139345--139432 Score: 131
Period size: 20 Copynumber: 4.4 Consensus size: 20
139335 GCGATTATTT
**
139345 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCATTTTCG
*
139365 AGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
*
139385 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTTTCG
*
139405 CGTTGCGATAGCCATTTTCG
1 CGTTGCGATAGTCATTTTCG
139425 CGTTGCGA
1 CGTTGCGA
139433 AAGTAAACTA
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.18, C:0.22, G:0.26, T:0.34
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTTCG
Found at i:139607 original size:18 final size:18
Alignment explanation
Indices: 139584--139629 Score: 92
Period size: 18 Copynumber: 2.6 Consensus size: 18
139574 CTAAGCAATA
139584 TAAGTGAAATGGTTAATC
1 TAAGTGAAATGGTTAATC
139602 TAAGTGAAATGGTTAATC
1 TAAGTGAAATGGTTAATC
139620 TAAGTGAAAT
1 TAAGTGAAAT
139630 TACGAGTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.41, C:0.04, G:0.22, T:0.33
Consensus pattern (18 bp):
TAAGTGAAATGGTTAATC
Found at i:141434 original size:19 final size:19
Alignment explanation
Indices: 141364--141444 Score: 90
Period size: 20 Copynumber: 4.2 Consensus size: 19
141354 CACAACACGA
*
141364 AAATGACTATCGCAACACG
1 AAATGACTATCGCAACGCG
* * *
141383 AATTTGAGTATCCCAACGCG
1 AA-ATGACTATCGCAACGCG
*
141403 AATTTGACTATCGCAACGCG
1 AA-ATGACTATCGCAACGCG
*
141423 AAATGACAATCGCAACGCG
1 AAATGACTATCGCAACGCG
141442 AAA
1 AAA
141445 CTAAAATCGC
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
19 20 0.38
20 33 0.62
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.19
Consensus pattern (19 bp):
AAATGACTATCGCAACGCG
Found at i:141452 original size:19 final size:19
Alignment explanation
Indices: 141412--141455 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
141402 GAATTTGACT
*
141412 ATCGCAACGCGAAATGACA
1 ATCGCAACGCGAAATGAAA
141431 ATCGCAACGCGAAACT-AAA
1 ATCGCAACGCGAAA-TGAAA
141450 ATCGCA
1 ATCGCA
141456 TTACGATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 22 0.96
20 1 0.04
ACGTcount: A:0.43, C:0.27, G:0.18, T:0.11
Consensus pattern (19 bp):
ATCGCAACGCGAAATGAAA
Found at i:141860 original size:22 final size:22
Alignment explanation
Indices: 141832--141873 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
141822 AGATAGACGA
*
141832 ATTTCGTCGGATATGGGGACTG
1 ATTTCGTCGGAGATGGGGACTG
141854 ATTTCGTCGGAGATGGGGAC
1 ATTTCGTCGGAGATGGGGAC
141874 GGATGTCGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.19, C:0.14, G:0.38, T:0.29
Consensus pattern (22 bp):
ATTTCGTCGGAGATGGGGACTG
Found at i:142073 original size:20 final size:20
Alignment explanation
Indices: 142048--142121 Score: 112
Period size: 20 Copynumber: 3.7 Consensus size: 20
142038 ACGCTTTGAA
*
142048 AATCGCATTGCGACAGTCAG
1 AATCGCATTGCGATAGTCAG
*
142068 AATCGCGTTGCGATAGTCAG
1 AATCGCATTGCGATAGTCAG
* *
142088 AATCGCATTGCGATAGTAAT
1 AATCGCATTGCGATAGTCAG
142108 AATCGCATTGCGAT
1 AATCGCATTGCGAT
142122 TTACATATTC
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 49 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (20 bp):
AATCGCATTGCGATAGTCAG
Found at i:142133 original size:20 final size:20
Alignment explanation
Indices: 142048--142144 Score: 97
Period size: 20 Copynumber: 4.8 Consensus size: 20
142038 ACGCTTTGAA
* * *
142048 AATCGCATTGCGACAGTCAG
1 AATCGCATTGCGATAGTAAT
* * *
142068 AATCGCGTTGCGATAGTCAG
1 AATCGCATTGCGATAGTAAT
142088 AATCGCATTGCGATAGTAAT
1 AATCGCATTGCGATAGTAAT
*
142108 AATCGCATTGCGAT-TTACAT
1 AATCGCATTGCGATAGTA-AT
* *
142128 ATTCGCGTTGCGATAGT
1 AATCGCATTGCGATAGT
142145 GTTGAAACAT
Statistics
Matches: 66, Mismatches: 9, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
19 2 0.03
20 63 0.95
21 1 0.02
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.29
Consensus pattern (20 bp):
AATCGCATTGCGATAGTAAT
Found at i:142521 original size:75 final size:75
Alignment explanation
Indices: 142387--142556 Score: 250
Period size: 75 Copynumber: 2.2 Consensus size: 75
142377 AGATTACTCA
* ** *
142387 GAGGGAACCGATTCCCCCCCATAGGAGGAACCGATTCCCCCCTGAATGGTTTGGCTCCGAGATTT
1 GAGGGAACCGATT--CCCCCATAGGAGGAACCGATTCCCCCCTAAACAGTTTGGCTCCGAGAATT
142452 CCAGAATGCTCG
64 CCAGAATGCTCG
* * *
142464 GAGGGAACCGATTCCCCCATAGGAGGAACCGATTCCCCCCTAAACATTTTTGTTCCGAGAATTCC
1 GAGGGAACCGATTCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGTTTGGCTCCGAGAATTCC
*
142529 AGTATGCTCG
66 AGAATGCTCG
142539 GAGGGAACCGATTCCCCC
1 GAGGGAACCGATTCCCCC
142557 CTGTTCAACG
Statistics
Matches: 85, Mismatches: 8, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
75 72 0.85
77 13 0.15
ACGTcount: A:0.24, C:0.31, G:0.24, T:0.21
Consensus pattern (75 bp):
GAGGGAACCGATTCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGTTTGGCTCCGAGAATTCC
AGAATGCTCG
Found at i:148343 original size:19 final size:19
Alignment explanation
Indices: 148319--148379 Score: 59
Period size: 23 Copynumber: 2.9 Consensus size: 19
148309 TTTTGGTGCA
*
148319 GAGGGAATCGATCCCCCCT
1 GAGGGAACCGATCCCCCCT
*
148338 GAGGGAACCGATTCCCCCTTT
1 GAGGGAACCGA-TCCCCC-CT
148359 GAAGGGGAACCGATTCCCCCC
1 G-A-GGGAACCGA-TCCCCCC
148380 ACAGGGGAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
19 10 0.29
20 6 0.17
21 2 0.06
22 1 0.03
23 16 0.46
ACGTcount: A:0.21, C:0.36, G:0.26, T:0.16
Consensus pattern (19 bp):
GAGGGAACCGATCCCCCCT
Found at i:151181 original size:76 final size:76
Alignment explanation
Indices: 150995--151203 Score: 269
Period size: 75 Copynumber: 2.8 Consensus size: 76
150985 CAAAGCCAAA
* * * * **
150995 AATTACAGATTGCTCAGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCCTGAATGG
1 AATTCCAGAATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATT-CCCCCCTAAACAG
151060 TTTGGCTCCGAG
65 TTTGGCTCCGAG
* *
151072 ATTTCCAGAATGCTCGGAGGGAACCGATT-CCCCCATAGGAGGAACCGATTCCCCCCTAAACATT
1 AATTCCAGAATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGT
* *
151136 TTTGTTCCGAG
66 TTGGCTCCGAG
* * * *
151147 AATTCCAGTATGCTCGGAGGGAACCGATTCCCCCC-CAGGGGGTACCGATTCCCCCCT
1 AATTCCAGAATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCT
151204 GTTCAACGGT
Statistics
Matches: 116, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
75 65 0.56
76 26 0.22
77 25 0.22
ACGTcount: A:0.23, C:0.32, G:0.23, T:0.22
Consensus pattern (76 bp):
AATTCCAGAATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGT
TTGGCTCCGAG
Found at i:151960 original size:22 final size:22
Alignment explanation
Indices: 151934--151992 Score: 66
Period size: 21 Copynumber: 2.7 Consensus size: 22
151924 ATTTACATAT
*
151934 TCGCATTGCGATAGTCGGAAAA
1 TCGCAATGCGATAGTCGGAAAA
* * *
151956 TCGCAACGCGA-ATTTGGAAAA
1 TCGCAATGCGATAGTCGGAAAA
*
151977 TCGTAATGCGATAGTC
1 TCGCAATGCGATAGTC
151993 AGAATCGCGT
Statistics
Matches: 28, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
21 17 0.61
22 11 0.39
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (22 bp):
TCGCAATGCGATAGTCGGAAAA
Found at i:153320 original size:24 final size:24
Alignment explanation
Indices: 153288--153339 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
153278 AGGACGTGGT
153288 GGTGGTGGCGGGTTTCGGGGAAGA
1 GGTGGTGGCGGGTTTCGGGGAAGA
153312 GGTGGTGGCGGGTTTCGGGGAAGA
1 GGTGGTGGCGGGTTTCGGGGAAGA
153336 GGTG
1 GGTG
153340 ATGTTGGGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.12, C:0.08, G:0.60, T:0.21
Consensus pattern (24 bp):
GGTGGTGGCGGGTTTCGGGGAAGA
Found at i:156107 original size:26 final size:26
Alignment explanation
Indices: 156071--156122 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
156061 AACCCATCCA
*
156071 AGTGTGCTGTACGTGGTAAATGAATT
1 AGTGTGCTGTACGTGATAAATGAATT
* *
156097 AGTGTGGTGTATGTGATAAATGAATT
1 AGTGTGCTGTACGTGATAAATGAATT
156123 GTTGTTGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.04, G:0.31, T:0.37
Consensus pattern (26 bp):
AGTGTGCTGTACGTGATAAATGAATT
Found at i:159825 original size:57 final size:57
Alignment explanation
Indices: 159757--159870 Score: 174
Period size: 57 Copynumber: 2.0 Consensus size: 57
159747 ACGCGAATTT
* ** *
159757 TAGTACTGTTTACCTATGTCGGTAATTAGCGTTGCGAATTTGAAAATCGCATTGCGA
1 TAGTACTGTTTACCTATATCGGTAATTAAAGTTGCGAATTTGAAAATCACATTGCGA
* *
159814 TAGTACTGTTTACCTATATCGGTAATTAAAGTTGTGAATTTGAAAATCACGTTGCGA
1 TAGTACTGTTTACCTATATCGGTAATTAAAGTTGCGAATTTGAAAATCACATTGCGA
159871 ATTTGAAAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 51 1.00
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (57 bp):
TAGTACTGTTTACCTATATCGGTAATTAAAGTTGCGAATTTGAAAATCACATTGCGA
Found at i:159872 original size:20 final size:20
Alignment explanation
Indices: 159844--159881 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
159834 GGTAATTAAA
*
159844 GTTGTGAATTTGAAAATCAC
1 GTTGCGAATTTGAAAATCAC
159864 GTTGCGAATTTGAAAATC
1 GTTGCGAATTTGAAAATC
159882 GCATTGCGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (20 bp):
GTTGCGAATTTGAAAATCAC
Found at i:159888 original size:20 final size:20
Alignment explanation
Indices: 159849--159890 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
159839 TTAAAGTTGT
*
159849 GAATTTGAAAATCACGTTGC
1 GAATTTGAAAATCACATTGC
*
159869 GAATTTGAAAATCGCATTGC
1 GAATTTGAAAATCACATTGC
159889 GA
1 GA
159891 TAGTACTGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (20 bp):
GAATTTGAAAATCACATTGC
Found at i:159962 original size:20 final size:20
Alignment explanation
Indices: 159939--159979 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
159929 TTGAAAATCG
*
159939 CATTGCGATAGTACTGTTTA
1 CATTGCGATAGCACTGTTTA
159959 CATTGCGATAGCACTGTTTA
1 CATTGCGATAGCACTGTTTA
159979 C
1 C
159980 CTATATCGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.37
Consensus pattern (20 bp):
CATTGCGATAGCACTGTTTA
Found at i:160022 original size:77 final size:75
Alignment explanation
Indices: 159801--160030 Score: 257
Period size: 77 Copynumber: 3.0 Consensus size: 75
159791 CGAATTTGAA
* * * *
159801 AATCGCATTGCGATAGTACTGTTTACCTATATCGGTAATTAAAGTTGTGAATTTGAAAATCACGT
1 AATCACATTGCGATAGTACTGTTTACCTATATCGGTAATTAAAGTTGCGAATTTGAAAATCGCAT
*
159866 TGCGAATTTG
66 TGCGAATCTG
* * **
159876 AAAATCGCATTGCGATAGTACTGTTTACCT-TATTGGTAATTAGCGTTGCGAATTTGAAAATCGC
1 --AATCACATTGCGATAGTACTGTTTACCTATATCGGTAATTAAAGTTGCGAATTTGAAAATCGC
159940 ATTGCGATAGTACTG
64 ATTGCGA-A-T-CTG
* * * * * *
159955 -TTTACATTGCGATAGCACTGTTTACCTATATCGGTAATTAATGTTACGAAATTGAAAATCGCAT
1 AATCACATTGCGATAGTACTGTTTACCTATATCGGTAATTAAAGTTGCGAATTTGAAAATCGCAT
*
160019 TGCGAATTTG
66 TGCGAATCTG
160029 AA
1 AA
160031 AATCGAATTT
Statistics
Matches: 130, Mismatches: 18, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
74 2 0.02
75 1 0.01
76 59 0.45
77 65 0.50
78 1 0.01
79 2 0.02
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.35
Consensus pattern (75 bp):
AATCACATTGCGATAGTACTGTTTACCTATATCGGTAATTAAAGTTGCGAATTTGAAAATCGCAT
TGCGAATCTG
Found at i:162329 original size:37 final size:36
Alignment explanation
Indices: 162286--162387 Score: 172
Period size: 34 Copynumber: 2.9 Consensus size: 36
162276 ATAGTATAAC
162286 TCTATCCTATTTTTAGGAGTTTGAATCCTAGCAAAAT
1 TCTATCCTATTTTTAGGAGTTTGAATCCTAG-AAAAT
*
162323 TTTATCCTATTTTTAGGAGTTTGAATCCT--AAAAT
1 TCTATCCTATTTTTAGGAGTTTGAATCCTAGAAAAT
162357 TCTATCCTATTTTTAGGAGTTTGAATCCTAG
1 TCTATCCTATTTTTAGGAGTTTGAATCCTAG
162388 TAGGACGAAA
Statistics
Matches: 61, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
34 33 0.54
37 28 0.46
ACGTcount: A:0.27, C:0.15, G:0.14, T:0.44
Consensus pattern (36 bp):
TCTATCCTATTTTTAGGAGTTTGAATCCTAGAAAAT
Found at i:163222 original size:105 final size:105
Alignment explanation
Indices: 162922--163687 Score: 1087
Period size: 105 Copynumber: 7.3 Consensus size: 105
162912 CATTGTTCCA
* * * * * * * *
162922 AGTCTAATATCCTCCGTCGTGAAGTTGAAATTGGCTCTGGAATCGGGAAATTGTTTGTTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTG-TTGTTGACAAG
* * *
162987 CAGTC-GTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCG
65 CAG-CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
**
163028 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGAATCTG-AA-TGA-AA-TT-TTGTTGACAAGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTGTTGACAAGC
163088 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * * *
163128 AATCCAATATCCTTCGTTGTGAAATTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTGTTGACAAGC
* *
163193 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTATGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
163233 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTGTTGACAAGC
* *
163298 AGTGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGA
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
163338 AGTCCAATATCCTTTGTTGTGAAGTTGAAATTGGCTCTGAAATTAAGAAGTTGTTGTTGACAAGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTGTTGACAAGC
*
163403 AGCGGTCCCTTCGTCGTGAAGTTGAAATTGCGTTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
163443 AGTCCAATATCCTTCGTTGTGAAGTTAAAATTGGCTCTGAAATTGAGAAGTTGTTGTTGACAGGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTGTTGACAAGC
*
163508 AGCGGTCCCTTCGCCGTGAAGTTGAACTTGCGTTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
163548 AGTCCAATATTCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTG-TTGTTGACAAG
* * *
163613 CAGTC-GTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCG
65 CAG-CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * *
163654 AGTGCCACGATATCCTCCGTCGTGGAGTTGAAAT
1 AGT-CCA--ATATCCTTCGTTGTGAAGTTGAAAT
163688 CGCATATGGC
Statistics
Matches: 599, Mismatches: 50, Indels: 19
0.90 0.07 0.03
Matches are distributed among these distances:
99 1 0.00
100 81 0.14
101 1 0.00
102 4 0.01
103 4 0.01
104 3 0.01
105 399 0.67
106 81 0.14
107 4 0.01
109 21 0.04
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.34
Consensus pattern (105 bp):
AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTGTTGACAAGC
AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
Found at i:164423 original size:67 final size:65
Alignment explanation
Indices: 164291--164614 Score: 240
Period size: 65 Copynumber: 4.8 Consensus size: 65
164281 AAGATATCTG
* * **
164291 TTGTTTCATGAGAAAC-GATCTCAAGGGAAACAAAATTATGTTTTAAGGGAAATAAATTTGAAGA
1 TTGTTTCAAGAGAAACTG-TCTCAAGGGAGACAAAATT-TGTTTTAAGGGAAATAAATTCAAAGA
164355 TTT
64 -TT
* * *
164358 TGTGTTTCAAGAGTAATTGTCTCAAGGGAGACAAAATTTGTTTTAGGGGAAATAAATTCAAAGAT
1 T-TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTTAAGGGAAATAAATTCAAAGAT
164423 T
65 T
* ** * *
164424 TTGTTTCAAGGGAAACTGTCTCAAGATAGACGAAAA-TTGTTTCAAGAGAAACTGTCTCAAGAGA
1 TTGTTTCAAGAGAAACTGTCTCAAGGGAGAC-AAAATTTGTTTTAAGGGAAA-----T--A-A-A
** *
164488 GACAAA-ACT
56 TTCAAAGATT
* * * * * * * * * *
164497 TAGTTCCAAAAGAAACTGTCTCAAGGGAGACGAAATTTGTTTCAAAGAAAACATATTCAAATATT
1 TTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTTAAGGGAAATAAATTCAAAGATT
* *
164562 TTGTTTCAAGAGAAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGAGAAA
1 TTGTTTCAAGAG-AAACTGTCTCAAGGGAGACAAAA-TTTGTTTTAAGGGAAA
164615 CTGTCTCAAG
Statistics
Matches: 201, Mismatches: 40, Indels: 32
0.74 0.15 0.12
Matches are distributed among these distances:
64 5 0.02
65 48 0.24
66 30 0.15
67 37 0.18
68 30 0.15
69 1 0.00
70 1 0.00
72 4 0.02
73 40 0.20
74 5 0.02
ACGTcount: A:0.40, C:0.11, G:0.20, T:0.29
Consensus pattern (65 bp):
TTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTTAAGGGAAATAAATTCAAAGATT
Found at i:164475 original size:36 final size:35
Alignment explanation
Indices: 164424--164817 Score: 193
Period size: 36 Copynumber: 11.4 Consensus size: 35
164414 TTCAAAGATT
* *
164424 TTGTTTCAAGGGAAACTGTCTCAAGATAGACGAAAA
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGAC-AAAA
164460 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
* * * *
164495 CTTAGTTCCAAAAGAAACTGTCTCAAGGGAGACGAAAT
1 -TT-GTTTCAAGAGAAACTGTCTCAAGAGAGAC-AAAA
* * **
164533 TTGTTTCAA-AGAAAACATAT-TC---A-A-A-TATT
1 TTGTTTCAAGAG-AAAC-TGTCTCAAGAGAGACAAAA
*
164562 TTGTTTCAAGAGAAAACTGTCTCAAGGGAGACAAAA
1 TTGTTTCAAGAG-AAACTGTCTCAAGAGAGACAAAA
*
164598 TTTTGTTTCAAGAGAAACTGTCTCAAGAGAGACGAAA
1 --TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
* * * * ***
164635 TTCATTTCAAGGGAAA-TGTTTTC-A-A-TG--TTTA
1 TT-GTTTCAAGAGAAACTG-TCTCAAGAGAGACAAAA
*
164666 -TGTTTCAAGAGAAACTATCTCAAGAGAGACAAAA
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
* * * * ***
164700 TTCATTTCAAGGGAAA-TGTTTTC-A-A-TG--TTTA
1 TT-GTTTCAAGAGAAACTG-TCTCAAGAGAGACAAAA
*
164731 -TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAA
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
* * *
164765 TTTTGTTTCAAGGGAAAATATCTCAAGAGAGACAAAA
1 --TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
* *
164802 TTCATTTCAAGGGAAA
1 TT-GTTTCAAGAGAAA
164818 TGTTTTCAAT
Statistics
Matches: 268, Mismatches: 54, Indels: 72
0.68 0.14 0.18
Matches are distributed among these distances:
29 41 0.15
30 16 0.06
31 4 0.01
32 3 0.01
33 2 0.01
34 5 0.02
35 17 0.06
36 84 0.31
37 81 0.30
38 15 0.06
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.28
Consensus pattern (35 bp):
TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
Found at i:164520 original size:37 final size:36
Alignment explanation
Indices: 164435--164546 Score: 138
Period size: 37 Copynumber: 3.1 Consensus size: 36
164425 TGTTTCAAGG
* * *
164435 GAAACTGTCTCAAGATAGACGAAAATTGTTTCAAGA
1 GAAACTGTCTCAAGAGAGACGAAAATTGTTCCAAAA
164471 GAAACTGTCTCAAGAGAGAC-AAAACTTAGTTCCAAAA
1 GAAACTGTCTCAAGAGAGACGAAAA-TT-GTTCCAAAA
* * *
164508 GAAACTGTCTCAAGGGAGACGAAATTTGTTTC-AAA
1 GAAACTGTCTCAAGAGAGACGAAAATTGTTCCAAAA
164543 GAAA
1 GAAA
164547 ACATATTCAA
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
35 11 0.16
36 25 0.37
37 28 0.42
38 3 0.04
ACGTcount: A:0.43, C:0.15, G:0.20, T:0.22
Consensus pattern (36 bp):
GAAACTGTCTCAAGAGAGACGAAAATTGTTCCAAAA
Found at i:164533 original size:138 final size:139
Alignment explanation
Indices: 164375--164630 Score: 381
Period size: 138 Copynumber: 1.8 Consensus size: 139
164365 CAAGAGTAAT
* ** * * *
164375 TGTCTCAAGGGAGACAAAATTTGTTTTAGGGGAAATAAATTCAAAGATTTTGTTTCAAG-GGAAA
1 TGTCTCAAGGGAGACAAAATTTGTTTCAAAGAAAACAAATTCAAAGATTTTGTTTCAAGAGAAAA
*
164439 CTGTCTCAAGATAGACGAAAA-TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTAGTTC
66 CTGTCTCAAGAGAGAC-AAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTAGTTC
164503 CAAAAGAAAC
130 CAAAAGAAAC
* * *
164513 TGTCTCAAGGGAGACGAAATTTGTTTCAAAGAAAACATATTCAAATATTTTGTTTCAAGAGAAAA
1 TGTCTCAAGGGAGACAAAATTTGTTTCAAAGAAAACAAATTCAAAGATTTTGTTTCAAGAGAAAA
*
164578 CTGTCTCAAGGGAGACAAAATTTTGTTTCAAGAGAAACTGTCTCAAGAGAGAC
66 CTGTCTCAAGAGAGACAAAA-TTTGTTTCAAGAGAAACTGTCTCAAGAGAGAC
164631 GAAATTCATT
Statistics
Matches: 104, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
138 55 0.53
139 18 0.17
140 31 0.30
ACGTcount: A:0.40, C:0.13, G:0.20, T:0.27
Consensus pattern (139 bp):
TGTCTCAAGGGAGACAAAATTTGTTTCAAAGAAAACAAATTCAAAGATTTTGTTTCAAGAGAAAA
CTGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTAGTTCC
AAAAGAAAC
Found at i:164593 original size:103 final size:101
Alignment explanation
Indices: 164460--164699 Score: 318
Period size: 103 Copynumber: 2.3 Consensus size: 101
164450 TAGACGAAAA
*
164460 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAACTGTCTCAAGGGA
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAACTGTCTCAAGAGA
**
164525 GACGAAATTTGTTTCAAAGAAAACATATTCAAATATT
66 GACGAAATTCATTTCAAAGAAAACATATTC-AATATT
* * * * *
164562 TTGTTTCAAGAGAAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGAGAAACTGTCTCAAGAG
1 TTGTTTCAAGAG-AAACTGTCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAACTGTCTCAAGAG
* * ** * *
164627 AGACGAAATTCATTTCAAGGGAAATGTTTTCAATGTT
65 AGACGAAATTCATTTCAAAGAAAACATATTCAATATT
*
164664 TATGTTTCAAGAGAAACTATCTCAAGAGAGACAAAA
1 T-TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
164700 TTCATTTCAA
Statistics
Matches: 120, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
102 39 0.32
103 81 0.68
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (101 bp):
TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAACTGTCTCAAGAGA
GACGAAATTCATTTCAAAGAAAACATATTCAATATT
Found at i:164610 original size:38 final size:37
Alignment explanation
Indices: 164554--164971 Score: 157
Period size: 37 Copynumber: 12.2 Consensus size: 37
164544 AAAACATATT
*
164554 CAAATATTTTGTTTCAAGAGAAAACTGTCTCAAGGGAGA
1 CAAA-ATTTTGTTTCAAGAG-AAACTGTCTCAAGAGAGA
164593 CAAAATTTTGTTTCAAGAGAAACTGTCTCAAGAGAGA
1 CAAAATTTTGTTTCAAGAGAAACTGTCTCAAGAGAGA
* ** * * *
164630 CGAAA-TTCATTTCAAGGGAAA-TGTTTTC-A-A-TG-
1 CAAAATTTTGTTTCAAGAGAAACTG-TCTCAAGAGAGA
*
164662 -----TTTATGTTTCAAGAGAAACTATCTCAAGAGAGA
1 CAAAATTT-TGTTTCAAGAGAAACTGTCTCAAGAGAGA
** * * *
164695 CAAAA-TTCATTTCAAGGGAAA-TGTTTTC-A-A-TG-
1 CAAAATTTTGTTTCAAGAGAAACTG-TCTCAAGAGAGA
*
164727 -----TTTATGTTTCAAGAGAAACTGTCTCAAGGGAGA
1 CAAAATTT-TGTTTCAAGAGAAACTGTCTCAAGAGAGA
* * *
164760 CAAAATTTTGTTTCAAGGGAAAATATCTCAAGAGAGA
1 CAAAATTTTGTTTCAAGAGAAACTGTCTCAAGAGAGA
** * **
164797 CAAAA-TTCATTTCAAGGGAAA-TGT-T-------TT
1 CAAAATTTTGTTTCAAGAGAAACTGTCTCAAGAGAGA
*
164824 CAATATTTATGTTTCAAGAGAAACTGTCTCAATG-GAGA
1 CAAAATTT-TGTTTCAAGAGAAACTGTCTCAA-GAGAGA
** * * * *
164862 CGGAATTTTGTTCCAAGGGAAA-TGTTTTC-A-A-TG-
1 CAAAATTTTGTTTCAAGAGAAACTG-TCTCAAGAGAGA
*
164895 -----TTTATGTTTCAAGAGAAACTGTCTCAAGGGAGA
1 CAAAATTT-TGTTTCAAGAGAAACTGTCTCAAGAGAGA
* *
164928 CAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAGA
1 CAAAATTTTGTTTCAAGAGAAACTGTCTCAAGAGAGA
164965 CAAAATT
1 CAAAATT
164972 CATTTCAAGG
Statistics
Matches: 274, Mismatches: 55, Indels: 102
0.64 0.13 0.24
Matches are distributed among these distances:
27 4 0.01
28 9 0.03
29 54 0.20
30 11 0.04
31 2 0.01
32 3 0.01
33 2 0.01
34 4 0.01
35 7 0.03
36 47 0.17
37 101 0.37
38 26 0.09
39 4 0.01
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.31
Consensus pattern (37 bp):
CAAAATTTTGTTTCAAGAGAAACTGTCTCAAGAGAGA
Done.