Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008073.1 Hibiscus syriacus cultivar Beakdansim tig00110575_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 510636
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
File 2 of 3
Found at i:234164 original size:20 final size:20
Alignment explanation
Indices: 234139--234178 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
234129 TTTTCCTTTG
234139 ATTTTGCTTTTTACTTTTTT
1 ATTTTGCTTTTTACTTTTTT
234159 ATTTTGCTTTTTACTTTTTT
1 ATTTTGCTTTTTACTTTTTT
234179 CTTTGTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.10, C:0.10, G:0.05, T:0.75
Consensus pattern (20 bp):
ATTTTGCTTTTTACTTTTTT
Found at i:234183 original size:19 final size:19
Alignment explanation
Indices: 234112--234200 Score: 78
Period size: 18 Copynumber: 4.8 Consensus size: 19
234102 ATACGTCTTG
*
234112 TTTT-CTTTTTTCTTT-AT
1 TTTTACTTTTTTCTTTGCT
* **
234129 TTTTCCTTTGAT-TTTGCT
1 TTTTACTTTTTTCTTTGCT
*
234147 TTTTACTTTTTTATTTTGCT
1 TTTTACTTTTTT-CTTTGCT
234167 TTTTACTTTTTTCTTTG-T
1 TTTTACTTTTTTCTTTGCT
*
234185 TTTTCTCTTTTTTCTT
1 TTTT-ACTTTTTTCTT
234201 CTTCTCTCTT
Statistics
Matches: 59, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
17 7 0.12
18 20 0.34
19 14 0.24
20 18 0.31
ACGTcount: A:0.06, C:0.13, G:0.04, T:0.76
Consensus pattern (19 bp):
TTTTACTTTTTTCTTTGCT
Found at i:238787 original size:10 final size:9
Alignment explanation
Indices: 238768--238793 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
238758 GAGGGTCCTG
238768 AAAAATAAA
1 AAAAATAAA
238777 AAAAATAAA
1 AAAAATAAA
238786 AAAAATAA
1 AAAAATAA
238794 TAATAATAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAAATAAA
Found at i:238801 original size:18 final size:19
Alignment explanation
Indices: 238768--238818 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 19
238758 GAGGGTCCTG
*
238768 AAAAATAAAAAAAATAA-A
1 AAAAATAATAAAAATAAGA
*
238786 AAAAATAATAATAATAAGTA
1 AAAAATAATAAAAATAAG-A
238806 AATAAATAATAAA
1 AA-AAATAATAAA
238819 TATTTTTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 15 0.56
20 3 0.11
21 9 0.33
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (19 bp):
AAAAATAATAAAAATAAGA
Found at i:239780 original size:16 final size:16
Alignment explanation
Indices: 239759--239791 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
239749 TAATAAATAA
239759 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
239775 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
239791 A
1 A
239792 AAATTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.58, C:0.24, G:0.12, T:0.06
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:239884 original size:16 final size:16
Alignment explanation
Indices: 239863--239921 Score: 109
Period size: 16 Copynumber: 3.7 Consensus size: 16
239853 ATAAATAAAG
239863 GAACATAAACGAACAC
1 GAACATAAACGAACAC
239879 GAACATAAACGAACAC
1 GAACATAAACGAACAC
*
239895 GAACATAAATGAACAC
1 GAACATAAACGAACAC
239911 GAACATAAACG
1 GAACATAAACG
239922 TTGGAGACCC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 41 1.00
ACGTcount: A:0.56, C:0.22, G:0.14, T:0.08
Consensus pattern (16 bp):
GAACATAAACGAACAC
Found at i:240958 original size:24 final size:24
Alignment explanation
Indices: 240931--241005 Score: 96
Period size: 24 Copynumber: 3.1 Consensus size: 24
240921 TATTGGGTTA
* *
240931 AACATAAATGAATGAACATAAACG
1 AACATAAACGAACGAACATAAACG
*
240955 AACATAACCGAACGAACATAAACG
1 AACATAAACGAACGAACATAAACG
* * *
240979 AACATAACCGAACGAACTTAACCG
1 AACATAAACGAACGAACATAAACG
241003 AAC
1 AAC
241006 GTTCACGAAC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.53, C:0.23, G:0.12, T:0.12
Consensus pattern (24 bp):
AACATAAACGAACGAACATAAACG
Found at i:240959 original size:10 final size:10
Alignment explanation
Indices: 240944--240991 Score: 51
Period size: 10 Copynumber: 4.4 Consensus size: 10
240934 ATAAATGAAT
240944 GAACATAAAC
1 GAACATAAAC
240954 GAACATAACCGAAC
1 GAACAT-A---AAC
240968 GAACATAAAC
1 GAACATAAAC
*
240978 GAACATAACC
1 GAACATAAAC
240988 GAAC
1 GAAC
240992 GAACTTAACC
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
10 22 0.67
11 1 0.03
13 1 0.03
14 9 0.27
ACGTcount: A:0.54, C:0.25, G:0.12, T:0.08
Consensus pattern (10 bp):
GAACATAAAC
Found at i:240968 original size:14 final size:14
Alignment explanation
Indices: 240951--241006 Score: 75
Period size: 14 Copynumber: 4.3 Consensus size: 14
240941 AATGAACATA
240951 AACGAACATAACCG
1 AACGAACATAACCG
240965 AACGAACAT-A---
1 AACGAACATAACCG
240975 AACGAACATAACCG
1 AACGAACATAACCG
*
240989 AACGAACTTAACCG
1 AACGAACATAACCG
241003 AACG
1 AACG
241007 TTCACGAACG
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
10 9 0.24
11 1 0.03
13 1 0.03
14 26 0.70
ACGTcount: A:0.50, C:0.27, G:0.14, T:0.09
Consensus pattern (14 bp):
AACGAACATAACCG
Found at i:242719 original size:18 final size:17
Alignment explanation
Indices: 242693--242726 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
242683 AATTAAGATC
*
242693 AAAAAATTATTTATTTT
1 AAAAAATTATTAATTTT
242710 AAAAATATTATTAATTT
1 AAAAA-ATTATTAATTT
242727 ATATTGATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
AAAAAATTATTAATTTT
Found at i:256780 original size:20 final size:20
Alignment explanation
Indices: 256743--256780 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
256733 GATTATGATG
*
256743 TTTCAATATGCATGTATATA
1 TTTCAATATGCATATATATA
256763 TTTC-ATATGACATATATA
1 TTTCAATATG-CATATATA
256781 ACCAAGTCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.37, C:0.11, G:0.08, T:0.45
Consensus pattern (20 bp):
TTTCAATATGCATATATATA
Found at i:265624 original size:20 final size:22
Alignment explanation
Indices: 265599--265638 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
265589 AGTCATATCT
265599 AGCCG-TTGGGGATG-TTTTGG
1 AGCCGTTTGGGGATGATTTTGG
265619 AGCCGTTTGGGGATGATTTT
1 AGCCGTTTGGGGATGATTTT
265639 CTACAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 9 0.50
22 4 0.22
ACGTcount: A:0.12, C:0.10, G:0.40, T:0.38
Consensus pattern (22 bp):
AGCCGTTTGGGGATGATTTTGG
Found at i:266171 original size:18 final size:18
Alignment explanation
Indices: 266124--266181 Score: 73
Period size: 18 Copynumber: 3.1 Consensus size: 18
266114 ATGTTTAATG
266124 AAAAAGATA-CAAATTGTT
1 AAAAAGATATC-AATTGTT
266142 AACAAAAGGATATCAATTGTT
1 -A-AAAA-GATATCAATTGTT
266163 AAAAAGATATCAATTGTT
1 AAAAAGATATCAATTGTT
266181 A
1 A
266182 CCAATTGTTG
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
18 14 0.39
19 5 0.14
20 5 0.14
21 11 0.31
22 1 0.03
ACGTcount: A:0.52, C:0.07, G:0.12, T:0.29
Consensus pattern (18 bp):
AAAAAGATATCAATTGTT
Found at i:269126 original size:20 final size:20
Alignment explanation
Indices: 269107--269182 Score: 100
Period size: 20 Copynumber: 3.7 Consensus size: 20
269097 GTATATAGCT
*
269107 GTTAGGGATGTTTTGGAGCT
1 GTTAGGGATGTTTTGGAGCC
269127 GTT-GAGGATGTTTTGGAGCC
1 GTTAG-GGATGTTTTGGAGCC
*
269147 GTTGGGGATGTTTTGGAGCC
1 GTTAGGGATGTTTTGGAGCC
269167 GTTTAGGGATGATTTT
1 G-TTAGGGATG-TTTT
269183 TCTGTAAAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
19 1 0.02
20 36 0.72
21 9 0.18
22 4 0.08
ACGTcount: A:0.14, C:0.07, G:0.39, T:0.39
Consensus pattern (20 bp):
GTTAGGGATGTTTTGGAGCC
Found at i:269797 original size:22 final size:22
Alignment explanation
Indices: 269756--269818 Score: 99
Period size: 22 Copynumber: 2.8 Consensus size: 22
269746 ATGAAATTTG
*
269756 TCCCAAAGGACCTTATGTATATA
1 TCCCGAAGGACC-TATGTATATA
269779 TCCCGAAGGACCTATGTATATA
1 TCCCGAAGGACCTATGTATATA
*
269801 TCACGAAGGACCTATGTA
1 TCCCGAAGGACCTATGTA
269819 ACCTGTAACA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
22 27 0.71
23 11 0.29
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.27
Consensus pattern (22 bp):
TCCCGAAGGACCTATGTATATA
Found at i:270424 original size:23 final size:23
Alignment explanation
Indices: 270393--270484 Score: 94
Period size: 23 Copynumber: 4.0 Consensus size: 23
270383 CACTACAGCT
* *
270393 CGTATAATTACACCGAAGTGCCA
1 CGTAGAATTACACCGGAGTGCCA
* * * *
270416 CGTAGAATTATATCGGAGTACCG
1 CGTAGAATTACACCGGAGTGCCA
*
270439 CGTAGAATTGCACCGGAGTGCCA
1 CGTAGAATTACACCGGAGTGCCA
* * *
270462 CATAGAATTGCACCGTAGTGCCA
1 CGTAGAATTACACCGGAGTGCCA
270485 TATAATAATG
Statistics
Matches: 56, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 56 1.00
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.22
Consensus pattern (23 bp):
CGTAGAATTACACCGGAGTGCCA
Found at i:271185 original size:19 final size:19
Alignment explanation
Indices: 271143--271187 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
271133 ATTTAATGGG
*
271143 GTGCATCGATGCACTCCTT
1 GTGCATCGATGCACTCCAT
* *
271162 ATGCATCGATGCACTTCAT
1 GTGCATCGATGCACTCCAT
271181 GTGCATC
1 GTGCATC
271188 AGTACACCTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.20, C:0.29, G:0.20, T:0.31
Consensus pattern (19 bp):
GTGCATCGATGCACTCCAT
Found at i:275460 original size:6 final size:6
Alignment explanation
Indices: 275441--275486 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
275431 CATACTGGTT
* * * *
275441 TCTTCC TCTGCC TCTTCC TCGTCC TCTGCC TCTTCC TCGTCC TCTT
1 TCTTCC TCTTCC TCTTCC TCTTCC TCTTCC TCTTCC TCTTCC TCTT
275487 TGTGAGGCAG
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.00, C:0.48, G:0.09, T:0.43
Consensus pattern (6 bp):
TCTTCC
Found at i:275467 original size:18 final size:18
Alignment explanation
Indices: 275444--275485 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
275434 ACTGGTTTCT
275444 TCCTCTGCCTCTTCCTCG
1 TCCTCTGCCTCTTCCTCG
275462 TCCTCTGCCTCTTCCTCG
1 TCCTCTGCCTCTTCCTCG
275480 TCCTCT
1 TCCTCT
275486 TTGTGAGGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.10, T:0.40
Consensus pattern (18 bp):
TCCTCTGCCTCTTCCTCG
Found at i:277316 original size:23 final size:23
Alignment explanation
Indices: 277290--277354 Score: 94
Period size: 23 Copynumber: 2.8 Consensus size: 23
277280 CAGCTCATAT
277290 AATTGCACCGAAGTGCCACGTAG
1 AATTGCACCGAAGTGCCACGTAG
* * *
277313 AATTACACCGGAGTGCCGCGTAG
1 AATTGCACCGAAGTGCCACGTAG
*
277336 AATTGCACCGTAGTGCCAC
1 AATTGCACCGAAGTGCCAC
277355 ATAAAAATGT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.28, C:0.28, G:0.26, T:0.18
Consensus pattern (23 bp):
AATTGCACCGAAGTGCCACGTAG
Found at i:277684 original size:25 final size:25
Alignment explanation
Indices: 277655--277712 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
277645 ATGCATATAG
*
277655 TATGAATTCATG-TCATGTATCATAA
1 TATGAATT-ATGATCATGTATCAAAA
* *
277680 TATGAAATGTGATCATGTATCAAAA
1 TATGAATTATGATCATGTATCAAAA
277705 TATTGAAT
1 TA-TGAAT
277713 CTAGACTTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 2 0.07
25 21 0.78
26 4 0.15
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.38
Consensus pattern (25 bp):
TATGAATTATGATCATGTATCAAAA
Found at i:283701 original size:2 final size:2
Alignment explanation
Indices: 283694--283733 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
283684 AAATAACACA
283694 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
283734 GAATTAACAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:284849 original size:30 final size:31
Alignment explanation
Indices: 284815--284889 Score: 93
Period size: 30 Copynumber: 2.5 Consensus size: 31
284805 TATATATATA
284815 TATTTTAATTAAAAAAAT-ATTTTA-AGTACT
1 TATTTTAATTAAAAAAATAATTTTACA-TACT
* * *
284845 TATTTTGA-TAAAATAATAATTTTACATATT
1 TATTTTAATTAAAAAAATAATTTTACATACT
284875 TATTTTAATTAAAAA
1 TATTTTAATTAAAAA
284890 TACTTTAAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
29 8 0.22
30 23 0.62
31 6 0.16
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.48
Consensus pattern (31 bp):
TATTTTAATTAAAAAAATAATTTTACATACT
Found at i:284918 original size:28 final size:27
Alignment explanation
Indices: 284887--284959 Score: 103
Period size: 28 Copynumber: 2.6 Consensus size: 27
284877 TTTTAATTAA
*
284887 AAATACTTTAAATA-TCTAAATAAAAATT
1 AAATATTTTAAATACT-TAAATAAAAA-T
284915 AAATATTTTAAATACTTAAATAAAAAT
1 AAATATTTTAAATACTTAAATAAAAAT
284942 AATATATTTTAAATACTT
1 AA-ATATTTTAAATACTT
284960 GTTTATTATA
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
27 3 0.07
28 38 0.90
29 1 0.02
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (27 bp):
AAATATTTTAAATACTTAAATAAAAAT
Found at i:298466 original size:6 final size:7
Alignment explanation
Indices: 298450--298476 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
298440 TATATAAATC
298450 TTTTAAT
1 TTTTAAT
298457 TTTTAAT
1 TTTTAAT
298464 TTTTAAT
1 TTTTAAT
298471 TTTTAA
1 TTTTAA
298477 AATGAAGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (7 bp):
TTTTAAT
Found at i:299928 original size:16 final size:17
Alignment explanation
Indices: 299907--299951 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
299897 TTAGTTTAAG
299907 AGTTTGAGAA-TTTCAA
1 AGTTTGAGAAGTTTCAA
*
299923 AGTTTGA-AAGTTTGAA
1 AGTTTGAGAAGTTTCAA
*
299939 CGTTTGAG-AGTTT
1 AGTTTGAGAAGTTT
299952 AAGATTTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
15 2 0.08
16 23 0.92
ACGTcount: A:0.31, C:0.04, G:0.24, T:0.40
Consensus pattern (17 bp):
AGTTTGAGAAGTTTCAA
Found at i:300192 original size:83 final size:83
Alignment explanation
Indices: 300038--300466 Score: 438
Period size: 83 Copynumber: 5.2 Consensus size: 83
300028 TATAAAATGG
** * * *
300038 CAGAGATTCTCTGAATAATAATGGAAATTGTTTCCCTTGGAACGCGCATTTCATTTCGGAT-GGG
1 CAGAGATTCTCTGAATAATAATGGAAAACGTTTCCCCTGGAACGCGCCTTTCATTTCGGATAGGA
300102 TTAGAACACTATGACATGA
66 TT-GAACACTATGACATGA
* * * *
300121 CAGAGATTCTCTGGATAATAATGGAAAACATTTCCCCTGGAACGCACCTTTCATTTTGGATAGGA
1 CAGAGATTCTCTGAATAATAATGGAAAACGTTTCCCCTGGAACGCGCCTTTCATTTCGGATAGGA
*
300186 TTGAACACTATGACATGG
66 TTGAACACTATGACATGA
* * * * * * *
300204 TAGAGATTATCTG-ATAATAATGAAAAACGTTTCCTCTGGAACACACCTTTTATTTC--ATATGT
1 CAGAGATTCTCTGAATAATAATGGAAAACGTTTCCCCTGGAACGCGCCTTTCATTTCGGATA-G-
*
300266 GATTGATCACTATGACAT-A
64 GATTGAACACTATGACATGA
* *** * * * *
300285 GCAGATATTCTCTGAATAATAATGGAAAATACTTCTCCTGGAACACGCCTTTCATTTCGAATGGG
1 -CAGAGATTCTCTGAATAATAATGGAAAACGTTTCCCCTGGAACGCGCCTTTCATTTCGGATAGG
* *
300350 ATGGAACACTATGACGTGGA
65 ATTGAACACTATGACAT-GA
* * * * * *
300370 -AGAGATTTTCTTAATAATAATGGAAAACGCTTCCCCTGGAATGCGTCTTTCATTTCGGATGGGA
1 CAGAGATTCTCTGAATAATAATGGAAAACGTTTCCCCTGGAACGCGCCTTTCATTTCGGATAGGA
*
300434 TGGAACACTATGACATGA
66 TTGAACACTATGACATGA
* *
300452 CACATATTCTCTGAA
1 CAGAGATTCTCTGAA
300467 AATGGGGAAA
Statistics
Matches: 286, Mismatches: 50, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
80 3 0.01
81 1 0.00
82 66 0.23
83 208 0.73
84 5 0.02
85 3 0.01
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (83 bp):
CAGAGATTCTCTGAATAATAATGGAAAACGTTTCCCCTGGAACGCGCCTTTCATTTCGGATAGGA
TTGAACACTATGACATGA
Found at i:300327 original size:165 final size:166
Alignment explanation
Indices: 300108--300466 Score: 425
Period size: 165 Copynumber: 2.2 Consensus size: 166
300098 TGGGTTAGAA
* * *
300108 CACTATGACATGACAGAGATTCTCTGGATAATAATGGAAAACATTTCCCCTGGAACGCACCTTTC
1 CACTATGACATGACAGAGATTCTCTGAATAATAATGGAAAACACTTCCCCTGGAACACACCTTTC
* * * * * *
300173 ATTTTGGATAGGATTGAACACTATGACATGGTAGAGATTATC-TGATAATAATGAAAAACGTTTC
66 ATTTCGAATAGGATGGAACACTATGACATGGAAGAGATTATCTTAATAATAATGAAAAACGCTTC
*
300237 CTCTGGAACACACCTTTTATTTCATATGTGATTGAT
131 CCCTGGAACACACCTTTTATTTCATATGTGATTGAT
* * * *
300273 CACTATGACAT-AGCAGATATTCTCTGAATAATAATGGAAAATACTTCTCCTGGAACACGCCTTT
1 CACTATGACATGA-CAGAGATTCTCTGAATAATAATGGAAAACACTTCCCCTGGAACACACCTTT
* * * *
300337 CATTTCGAATGGGATGGAACACTATGACGTGGAAGAGATTTTCTTAATAATAATGGAAAACGCTT
65 CATTTCGAATAGGATGGAACACTATGACATGGAAGAGATTATCTTAATAATAATGAAAAACGCTT
** ** * ** * * *
300402 CCCCTGGAATGCGTCTTTCATTTCGGATGGGATGGAA
130 CCCCTGGAACACACCTTTTATTTCATATGTGATTGAT
* *
300439 CACTATGACATGACACATATTCTCTGAA
1 CACTATGACATGACAGAGATTCTCTGAA
300467 AATGGGGAAA
Statistics
Matches: 162, Mismatches: 29, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
164 1 0.01
165 91 0.56
166 69 0.43
167 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (166 bp):
CACTATGACATGACAGAGATTCTCTGAATAATAATGGAAAACACTTCCCCTGGAACACACCTTTC
ATTTCGAATAGGATGGAACACTATGACATGGAAGAGATTATCTTAATAATAATGAAAAACGCTTC
CCCTGGAACACACCTTTTATTTCATATGTGATTGAT
Found at i:301364 original size:27 final size:26
Alignment explanation
Indices: 301313--301380 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 26
301303 TGAACTATAA
* *
301313 AAACAACAAACCATAAACATTACATT
1 AAACAACAAACCATAAACATGACATG
*
301339 AAACAACAAACTATTAAACATGACATG
1 AAACAACAAACCA-TAAACATGACATG
301366 AAACATACCAAACCA
1 AAACA-A-CAAACCA
301381 ACGAACCAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 12 0.34
27 16 0.46
28 1 0.03
29 6 0.17
ACGTcount: A:0.57, C:0.24, G:0.03, T:0.16
Consensus pattern (26 bp):
AAACAACAAACCATAAACATGACATG
Found at i:301453 original size:32 final size:32
Alignment explanation
Indices: 301412--301482 Score: 106
Period size: 32 Copynumber: 2.2 Consensus size: 32
301402 TCTTTCACAG
* *
301412 ACCTTAAACAGTAAATAAAAACATACACATAA
1 ACCTAAAACAATAAATAAAAACATACACATAA
* *
301444 ACCTAAAACAATAAATAAAAACATACGCATAC
1 ACCTAAAACAATAAATAAAAACATACACATAA
301476 ACCTAAA
1 ACCTAAA
301483 GCAGACTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.59, C:0.21, G:0.03, T:0.17
Consensus pattern (32 bp):
ACCTAAAACAATAAATAAAAACATACACATAA
Found at i:302337 original size:15 final size:15
Alignment explanation
Indices: 302305--302365 Score: 59
Period size: 15 Copynumber: 4.1 Consensus size: 15
302295 TGCTCTTCAC
* **
302305 CATCCTCATCGTTGT
1 CATCCTCATCCTCCT
302320 CATCCTCATCCTCCT
1 CATCCTCATCCTCCT
* * **
302335 CATCATCATCTTCAA
1 CATCCTCATCCTCCT
302350 CATCCTCATCCTCCT
1 CATCCTCATCCTCCT
302365 C
1 C
302366 TTCTTCCTCG
Statistics
Matches: 35, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
15 35 1.00
ACGTcount: A:0.18, C:0.44, G:0.03, T:0.34
Consensus pattern (15 bp):
CATCCTCATCCTCCT
Found at i:309398 original size:15 final size:17
Alignment explanation
Indices: 309367--309403 Score: 60
Period size: 15 Copynumber: 2.3 Consensus size: 17
309357 AAAGGAGATC
309367 AAGCTGACAAGGCTAGA
1 AAGCTGACAAGGCTAGA
309384 AAGCTG-CAA-GCTAGA
1 AAGCTGACAAGGCTAGA
309399 AAGCT
1 AAGCT
309404 AGAAAGAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 11 0.55
16 3 0.15
17 6 0.30
ACGTcount: A:0.41, C:0.19, G:0.27, T:0.14
Consensus pattern (17 bp):
AAGCTGACAAGGCTAGA
Found at i:311174 original size:15 final size:15
Alignment explanation
Indices: 311154--311188 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
311144 TGCTCACCAT
311154 TCGAACACA-CTTCAC
1 TCGAACA-AGCTTCAC
311169 TCGAACAAGCTTCAC
1 TCGAACAAGCTTCAC
311184 TCGAA
1 TCGAA
311189 GAGCCTTGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 1 0.05
15 18 0.95
ACGTcount: A:0.34, C:0.34, G:0.11, T:0.20
Consensus pattern (15 bp):
TCGAACAAGCTTCAC
Found at i:313620 original size:15 final size:17
Alignment explanation
Indices: 313589--313625 Score: 60
Period size: 15 Copynumber: 2.3 Consensus size: 17
313579 AAAGGAGATC
313589 AAGCTGACAAGGCTAGA
1 AAGCTGACAAGGCTAGA
313606 AAGCTG-CAA-GCTAGA
1 AAGCTGACAAGGCTAGA
313621 AAGCT
1 AAGCT
313626 AGAAAGAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 11 0.55
16 3 0.15
17 6 0.30
ACGTcount: A:0.41, C:0.19, G:0.27, T:0.14
Consensus pattern (17 bp):
AAGCTGACAAGGCTAGA
Found at i:315591 original size:37 final size:37
Alignment explanation
Indices: 315518--315592 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 37
315508 GTTAGAAAAT
* *
315518 ATTTATATATTTTATTTAAAAAATTTAAATTCATAAA
1 ATTTATATATTTTATTTAAAAAATTAAAAATCATAAA
* * *
315555 ATTTATATAATTTTTTTTTAGAAATTAAAAAT-ATAAA
1 ATTTATAT-ATTTTATTTAAAAAATTAAAAATCATAAA
315592 A
1 A
315593 AGGTTTAATG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
37 14 0.44
38 18 0.56
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (37 bp):
ATTTATATATTTTATTTAAAAAATTAAAAATCATAAA
Found at i:320509 original size:249 final size:242
Alignment explanation
Indices: 320006--320574 Score: 698
Period size: 249 Copynumber: 2.3 Consensus size: 242
319996 ATTTTTATTC
320006 AATATATGAATTAGAAACCCGACCCGACACGGCATGAAATAATAAAAAAACTATTTTTATTCAAT
1 AATATATGAATTAGAAACCCGACCCGAC-C--C--GAAATAATAAAAAAA-TATTTTTATTCAAT
* *
320071 AAAAACATTGACTTAATTGAAAAAAATTATATATAGAAGGGTATTATTGTAATTATTCCTAAATA
60 ----ATAGTGACTTAATTGAAAAAAATTATATATAGAAGGGTATTATTGTAATTATTCCTAAATA
* *
320136 TATAAAGTAAAATTATATATTTTTTTCAGGTCGGGTCCGGTTTTTTCACCCTAAACTCGAACCCG
121 TATAAAGTAAAATTATATATTATTTTCAGGTCGGGT-C--ATTTTTCACCCTAAACTCGAACCCG
*
320201 AATATCACACTTAAAAAACCAGACCCAACCCGAACAAAATAAAGTTTCACCCGACCCGACCTG
183 AATATCACACTTAAAAAACCAGACCCAACCCGAACAAAATAAAGTTT---CCGACCCGACCCG
* *
320264 AATATATGAATTAGAAATCCGACCCGACCCGAAGTAATAAAAAAATTATTTTTATTCAATATAGT
1 AATATATGAATTAGAAACCCGACCCGACCCGAAATAATAAAAAAA-TATTTTTATTCAATATAGT
* *
320329 GACTTAATTGAAAAAAATTATATATAGAGGGGTATTATTGTAATTATTCCTAAATATATAAGGTA
65 GACTTAATTGAAAAAAATTATATATAGAAGGGTATTATTGTAATTATTCCTAAATATATAAAGTA
*
320394 AAATTATATA-TATTTTCGGGTCGGGT-ATTTTTCACCCTAAACCCGAACTCGACCCGACCCGAA
130 AAATTATATATTATTTTCAGGTCGGGTCATTTTTCACCCT--A----AACTCGA----ACCCGAA
* ** *
320457 TATCACACTTAAAAAAATC-GACCCGGCCCGACCAAAATAAAGTTT-C-ACCCGACCCG
185 TATCACACTT-AAAAAACCAGACCCAACCCGAACAAAATAAAGTTTCCGACCCGACCCG
* **
320513 AATATATGAATTAAAAACCCGACTTGACCCGAAATAATAAAAAAATATTTTTATTCAATATA
1 AATATATGAATTAGAAACCCGACCCGACCCGAAATAATAAAAAAATATTTTTATTCAATATA
320575 TGAATAAATT
Statistics
Matches: 280, Mismatches: 20, Indels: 32
0.84 0.06 0.10
Matches are distributed among these distances:
244 11 0.04
246 1 0.00
248 31 0.11
249 125 0.45
250 8 0.03
253 28 0.10
254 40 0.14
255 8 0.03
257 1 0.00
258 27 0.10
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (242 bp):
AATATATGAATTAGAAACCCGACCCGACCCGAAATAATAAAAAAATATTTTTATTCAATATAGTG
ACTTAATTGAAAAAAATTATATATAGAAGGGTATTATTGTAATTATTCCTAAATATATAAAGTAA
AATTATATATTATTTTCAGGTCGGGTCATTTTTCACCCTAAACTCGAACCCGAATATCACACTTA
AAAAACCAGACCCAACCCGAACAAAATAAAGTTTCCGACCCGACCCG
Found at i:321601 original size:231 final size:231
Alignment explanation
Indices: 321168--321603 Score: 565
Period size: 233 Copynumber: 1.9 Consensus size: 231
321158 GCAATATATT
* * *
321168 CCATTTGAAATGATGAAACAGAGCATGTTGATGGGAAAGCGAGAAACAGTAAATGGACAAAAAAC
1 CCATCTGAAATGATGAAACAGAGCATGTTGAAGGGAAAGCGAGAAACAGTAAAAGGACAAAAAAC
*** * * * * * *
321233 ATGATAATTTTTCAAATGTTGATAATCATAAGCAAAAACTTAAAAACTGAATTTCATACATACAA
66 ATGATAATTTTTCAAATGCCAACAAGCATAAGCAAAAACTCAAAAAATAAATTTCACACATACAA
* * *
321298 AAAAGGAAACCATAAGTAGTAACTAGTAACAAGCATCAAACTGCATTGGACAAATTAAATTGCAC
131 AAAAGGAAACCAT-AGTAGCAACTAGTAACAAACATCAAACTGCATGGGACAAATTAAATTGCAC
321363 AAGGCAGTTAAATGATTACATAAAACACCAGTGAACA
195 AAGGCAGTTAAATGATTACATAAAACACCAGTGAACA
* *
321400 CCATCTGAAATGATGAAACAGAG-ATGGTTGAAGGGAAAGCGAGAAAGAGTAAAAGTACAAACAA
1 CCATCTGAAATGATGAAACAGAGCAT-GTTGAAGGGAAAGCGAGAAACAGTAAAAGGACAAA-AA
* * * * *
321464 GCATGGTCATTTTTCAAATGCCAACAAGCATAAGTAAAAACTCAAAAAATAAATTTCACATATAC
64 ACATGATAATTTTTCAAATGCCAACAAGCATAAGCAAAAACTCAAAAAATAAATTTCACACATAC
* * * *
321529 AAAAGAAGGAAACCAT-GT-GCAAGTAGTAACAAACGTCAAATTGC-TAGGGACAAATTAATTTG
129 AAAA-AAGGAAACCATAGTAGCAACTAGTAACAAACATCAAACTGCAT-GGGACAAATTAAATTG
321591 CACAAGGCAGTTA
192 CACAAGGCAGTTA
321604 TCACATAAAG
Statistics
Matches: 174, Mismatches: 26, Indels: 9
0.83 0.12 0.04
Matches are distributed among these distances:
230 1 0.01
231 50 0.29
232 55 0.32
233 57 0.33
234 11 0.06
ACGTcount: A:0.47, C:0.14, G:0.17, T:0.21
Consensus pattern (231 bp):
CCATCTGAAATGATGAAACAGAGCATGTTGAAGGGAAAGCGAGAAACAGTAAAAGGACAAAAAAC
ATGATAATTTTTCAAATGCCAACAAGCATAAGCAAAAACTCAAAAAATAAATTTCACACATACAA
AAAAGGAAACCATAGTAGCAACTAGTAACAAACATCAAACTGCATGGGACAAATTAAATTGCACA
AGGCAGTTAAATGATTACATAAAACACCAGTGAACA
Found at i:329236 original size:23 final size:24
Alignment explanation
Indices: 329193--329240 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
329183 GATTATTTAA
*
329193 AATTAAAAATAATATTTTTTTTCT
1 AATTAAAAATAATATTATTTTTCT
329217 AATTAAAAAT-ATCA-TATTTTTCT
1 AATTAAAAATAAT-ATTATTTTTCT
329240 A
1 A
329241 TTTATCTGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 11 0.50
24 11 0.50
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (24 bp):
AATTAAAAATAATATTATTTTTCT
Found at i:342319 original size:21 final size:21
Alignment explanation
Indices: 342293--342337 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
342283 GATTTCTGGG
* *
342293 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
342314 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
342335 CAA
1 CAA
342338 ACGAACAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:344203 original size:23 final size:23
Alignment explanation
Indices: 344159--344203 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
344149 ATCATTATAT
*
344159 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTATACGC
* *
344182 GGCACTTCGGTGCATTTATACG
1 GGCACTACGGTGCAATTATACG
344204 AGCTATGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGC
Found at i:347463 original size:21 final size:21
Alignment explanation
Indices: 347437--347481 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
347427 GATTTCTGGG
* *
347437 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
347458 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
347479 CAA
1 CAA
347482 ACGAACAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:352612 original size:21 final size:21
Alignment explanation
Indices: 352586--352630 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
352576 GATTTCTGGG
* *
352586 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
352607 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
352628 CAA
1 CAA
352631 ACGAACAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:354500 original size:23 final size:23
Alignment explanation
Indices: 354456--354500 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
354446 ATCATTATAT
*
354456 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTATACGC
* *
354479 GGCACTTCGGTGCATTTATACG
1 GGCACTACGGTGCAATTATACG
354501 AGCTATGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGC
Found at i:360622 original size:186 final size:186
Alignment explanation
Indices: 360295--360686 Score: 705
Period size: 186 Copynumber: 2.1 Consensus size: 186
360285 TTTTCTAATT
* * *
360295 TATATAA-AAATTAAATATTTTATAATTCAAAAAAACAGTTTATAATTAATTTAAATAATATATA
1 TATATAATATATTTAATATTTTATAATTCAAAAAAACAGTTTACAATTAATTTAAATAATATATA
360359 ATTATAAAATAAAAATTTTATATAAATTTTTTAATTAATTAATATTGATTTAGGTTTAAAAGTTA
66 ATTATAAAATAAAAATTTTATATAAATTTTTTAATTAATTAATATTGATTTAGGTTTAAAAGTTA
*
360424 TTGAATCTTAAATTATTAATTGGGTTTTAAATGGTTTGGGCTGAGCCCATATGTTA
131 TTGAATCTTAAATTATTAATTGGATTTTAAATGGTTTGGGCTGAGCCCATATGTTA
* *
360480 TATATAATATATTTAATATTTTTTAATTCAAAAAAATAGTTTACAATTAATTTAAATAATATATA
1 TATATAATATATTTAATATTTTATAATTCAAAAAAACAGTTTACAATTAATTTAAATAATATATA
360545 ATTATAAAATAAAAATTTTATATAAATTTTTTAATTAATTAATATTGATTTAGGTTTAAAAGTTA
66 ATTATAAAATAAAAATTTTATATAAATTTTTTAATTAATTAATATTGATTTAGGTTTAAAAGTTA
*
360610 TTGGATCTTAAATTATTAATTGGATTTTAAATGGTTTGGGCTGAGCCCATATGTTA
131 TTGAATCTTAAATTATTAATTGGATTTTAAATGGTTTGGGCTGAGCCCATATGTTA
*
360666 TATATAATATATTTAAAATTT
1 TATATAATATATTTAATATTT
360687 AAAATTTTAT
Statistics
Matches: 198, Mismatches: 8, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
185 7 0.04
186 191 0.96
ACGTcount: A:0.43, C:0.04, G:0.09, T:0.45
Consensus pattern (186 bp):
TATATAATATATTTAATATTTTATAATTCAAAAAAACAGTTTACAATTAATTTAAATAATATATA
ATTATAAAATAAAAATTTTATATAAATTTTTTAATTAATTAATATTGATTTAGGTTTAAAAGTTA
TTGAATCTTAAATTATTAATTGGATTTTAAATGGTTTGGGCTGAGCCCATATGTTA
Found at i:371748 original size:36 final size:36
Alignment explanation
Indices: 371708--371792 Score: 170
Period size: 36 Copynumber: 2.4 Consensus size: 36
371698 GAAACATTTA
371708 CCAAACTTTGAAAAAAACATTTTCCAAAGTTGGTTG
1 CCAAACTTTGAAAAAAACATTTTCCAAAGTTGGTTG
371744 CCAAACTTTGAAAAAAACATTTTCCAAAGTTGGTTG
1 CCAAACTTTGAAAAAAACATTTTCCAAAGTTGGTTG
371780 CCAAACTTTGAAA
1 CCAAACTTTGAAA
371793 CTTTTAACAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 49 1.00
ACGTcount: A:0.40, C:0.18, G:0.13, T:0.29
Consensus pattern (36 bp):
CCAAACTTTGAAAAAAACATTTTCCAAAGTTGGTTG
Found at i:375842 original size:16 final size:16
Alignment explanation
Indices: 375818--375851 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
375808 TATCGCCGAC
*
375818 CGAATTTCACTATTCA
1 CGAAATTCACTATTCA
375834 CGAAATTCACTATTCA
1 CGAAATTCACTATTCA
375850 CG
1 CG
375852 TGAATAGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.26, G:0.09, T:0.32
Consensus pattern (16 bp):
CGAAATTCACTATTCA
Found at i:381897 original size:19 final size:20
Alignment explanation
Indices: 381873--381917 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
381863 CCCAGTCCTA
* *
381873 CAACAAT-CCCTTAACAAAT
1 CAACAATCCCCCTAACAAAC
381892 CAACAATCCCCCTAACAAAC
1 CAACAATCCCCCTAACAAAC
381912 CAACAA
1 CAACAA
381918 AGCCATCCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.49, C:0.38, G:0.00, T:0.13
Consensus pattern (20 bp):
CAACAATCCCCCTAACAAAC
Found at i:384298 original size:7 final size:7
Alignment explanation
Indices: 384286--384429 Score: 112
Period size: 7 Copynumber: 20.4 Consensus size: 7
384276 ATATTATAAA
384286 GTTTAGG
1 GTTTAGG
384293 GTTTAGG
1 GTTTAGG
384300 GTTTAGG
1 GTTTAGG
**
384307 GTTTATA
1 GTTTAGG
*
384314 GTTTA-T
1 GTTTAGG
* *
384320 GTGATAAG
1 GT-TTAGG
*
384328 ATTTAAGG
1 GTTT-AGG
* *
384336 TTTTAGA
1 GTTTAGG
384343 GTTTAGG
1 GTTTAGG
384350 GTTTAGG
1 GTTTAGG
384357 GTTTAGG
1 GTTTAGG
384364 GTTTAGG
1 GTTTAGG
384371 GTTTAGG
1 GTTTAGG
*
384378 GTTTAGA
1 GTTTAGG
* *
384385 TTTTAAG
1 GTTTAGG
*
384392 ATTTAGG
1 GTTTAGG
**
384399 GTTT-TT
1 GTTTAGG
384405 GTGTTAGG
1 GT-TTAGG
*
384413 GGTTAGG
1 GTTTAGG
384420 GTTTAGG
1 GTTTAGG
384427 GTT
1 GTT
384430 AAATATAAAA
Statistics
Matches: 107, Mismatches: 25, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
6 4 0.04
7 96 0.90
8 7 0.07
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.46
Consensus pattern (7 bp):
GTTTAGG
Found at i:386046 original size:31 final size:31
Alignment explanation
Indices: 385986--386046 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
385976 GTTCGAGCAT
* * *
385986 TTTCGAGTTCGAGTCGAGTTTTAATATTTTC
1 TTTCGAGTTCGAGTCGAGCTTAAAAATTTTC
*
386017 TTTCGAGTTCGAGTTGAGCTTAAAAATTTT
1 TTTCGAGTTCGAGTCGAGCTTAAAAATTTT
386047 AGGCTCGCTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.23, C:0.11, G:0.20, T:0.46
Consensus pattern (31 bp):
TTTCGAGTTCGAGTCGAGCTTAAAAATTTTC
Found at i:388829 original size:41 final size:41
Alignment explanation
Indices: 388704--388859 Score: 129
Period size: 42 Copynumber: 3.8 Consensus size: 41
388694 TAAACAACCA
** * * * * *
388704 TATTGCGGCGTTTTAGATATAAACGCCACTAATTTACCAATA
1 TATTGCGGCGTTTGGGCTATAAACGCCGCTAAATTA-CACTC
* *
388746 TATTGTGGCGTTTGTGG-TATAAACGCCGCTACATTAACACTC
1 TATTGCGGCGTTTG-GGCTATAAACGCCGCTAAATT-ACACTC
388788 TATTGCGGCGTTTGGGCTA-AAACGCCGCTAAATGT-CTACTC
1 TATTGCGGCGTTTGGGCTATAAACGCCGCTAAAT-TAC-ACTC
* ***
388829 TATTGCGACGTTTTTACTATAAACGCCGCTA
1 TATTGCGGCGTTTGGGCTATAAACGCCGCTA
388860 TTGATTAACC
Statistics
Matches: 94, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
40 1 0.01
41 34 0.36
42 57 0.61
43 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (41 bp):
TATTGCGGCGTTTGGGCTATAAACGCCGCTAAATTACACTC
Found at i:389877 original size:25 final size:25
Alignment explanation
Indices: 389843--389895 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
389833 AAACATTGCC
389843 ATTTATTATATGTAGTCTAAAAATA
1 ATTTATTATATGTAGTCTAAAAATA
389868 ATTTATTATATGTAGTCTAAAAATA
1 ATTTATTATATGTAGTCTAAAAATA
389893 ATT
1 ATT
389896 GATAAATTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.43, C:0.04, G:0.08, T:0.45
Consensus pattern (25 bp):
ATTTATTATATGTAGTCTAAAAATA
Found at i:393068 original size:42 final size:41
Alignment explanation
Indices: 393017--393118 Score: 118
Period size: 42 Copynumber: 2.5 Consensus size: 41
393007 CACGAAAGCT
393017 AATTTCGCAACAC-AATTTCCGAATTCGCAACTCGAATTTGA
1 AATTTCGCAACACGAATTT-CGAATTCGCAACTCGAATTTGA
*** * *
393058 CAATTTCGCAACACGAATTTCTTTTTCGCAACTCGATTTTTA
1 -AATTTCGCAACACGAATTTCGAATTCGCAACTCGAATTTGA
*
393100 AA-TTCGCAACACGAGTTTC
1 AATTTCGCAACACGAATTTC
393119 CTTTTCGCAA
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
40 16 0.30
41 2 0.04
42 30 0.57
43 5 0.09
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (41 bp):
AATTTCGCAACACGAATTTCGAATTCGCAACTCGAATTTGA
Found at i:393113 original size:40 final size:40
Alignment explanation
Indices: 393020--393149 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
393010 GAAAGCTAAT
** * *
393020 TTCGCAACAC-AATTTCCGAATTCGCAACTCGAATTTGACAA
1 TTCGCAACACGAATTTCC-TTTTCGCAACTCGATTTTTA-AA
*
393061 TTTCGCAACACGAATTTCTTTTTCGCAACTCGATTTTTAAA
1 -TTCGCAACACGAATTTCCTTTTCGCAACTCGATTTTTAAA
* **
393102 TTCGCAACACGAGTTTCCTTTTCGCAACAAGATTTTCT-AA
1 TTCGCAACACGAATTTCCTTTTCGCAACTCGATTTT-TAAA
393142 TTCGCAAC
1 TTCGCAAC
393150 GCGGGTTTAA
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
40 42 0.55
41 3 0.04
42 26 0.34
43 6 0.08
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (40 bp):
TTCGCAACACGAATTTCCTTTTCGCAACTCGATTTTTAAA
Found at i:393146 original size:60 final size:60
Alignment explanation
Indices: 393061--393231 Score: 157
Period size: 60 Copynumber: 2.9 Consensus size: 60
393051 AATTTGACAA
* ** * ** *
393061 TTTCGCAACACGAATTTCTTTTTCGCAACTCGATTTTTAAA-TTCGCAACACGAGTTTCCT
1 TTTCGCAACAAGAATTTCTAATTCGCAACGCG-GGTTTAAATTTCGCAACACGAATTTCCT
* *
393121 TTTCGCAACAAGATTTTCTAATTCGCAACGCGGGTTTAAATTTCGCAACACGAATTTCGT
1 TTTCGCAACAAGAATTTCTAATTCGCAACGCGGGTTTAAATTTCGCAACACGAATTTCCT
* ** * * * * *
393181 TTTTGCAACGCGAATTT-AAATTTCGCAACTCAGCTTTTAATTTCGCAACAC
1 TTTCGCAACAAGAATTTCTAA-TTCGCAACGCGGGTTTAAATTTCGCAACAC
393232 AAATATTTTG
Statistics
Matches: 91, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
59 8 0.09
60 83 0.91
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.36
Consensus pattern (60 bp):
TTTCGCAACAAGAATTTCTAATTCGCAACGCGGGTTTAAATTTCGCAACACGAATTTCCT
Found at i:393165 original size:40 final size:40
Alignment explanation
Indices: 393081--393209 Score: 127
Period size: 40 Copynumber: 3.2 Consensus size: 40
393071 CGAATTTCTT
* * ***
393081 TTTCGCAACTCGATTTT-TAAATTCGCAACACGAGTTTCCT
1 TTTCGCAACACGATTTTCT-AATTCGCAACGCGAGTTTAAA
* *
393121 TTTCGCAACAAGATTTTCTAATTCGCAACGCGGGTTTAAA
1 TTTCGCAACACGATTTTCTAATTCGCAACGCGAGTTTAAA
* * * *
393161 TTTCGCAACACGAATTTCGT-TTTTGCAACGCGAATTTAAA
1 TTTCGCAACACGATTTTC-TAATTCGCAACGCGAGTTTAAA
393201 TTTCGCAAC
1 TTTCGCAAC
393210 TCAGCTTTTA
Statistics
Matches: 74, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
40 72 0.97
41 2 0.03
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (40 bp):
TTTCGCAACACGATTTTCTAATTCGCAACGCGAGTTTAAA
Found at i:393208 original size:20 final size:20
Alignment explanation
Indices: 392994--393231 Score: 112
Period size: 20 Copynumber: 11.8 Consensus size: 20
392984 CTAACTCAAT
392994 TTTAAA-TTCGCAACACGAAA
1 TTTAAATTTCGCAACACG-AA
**
393014 GCT-AATTTCGCAACAC-AA
1 TTTAAATTTCGCAACACGAA
* *
393032 TTTCCGAA-TTCGCAACTCGAA
1 TTT--AAATTTCGCAACACGAA
393053 TTTGACAATTTCGCAACACGAA
1 TTT-A-AATTTCGCAACACGAA
*** * *
393075 TTTCTTTTTCGCAACTCGATT
1 TTTAAATTTCGCAACACGA-A
*
393096 TTTAAA-TTCGCAACACGAG
1 TTTAAATTTCGCAACACGAA
*** * *
393115 TTTCCTTTTCGCAACAAGAT
1 TTTAAATTTCGCAACACGAA
* * **
393135 TTTCTAA-TTCGCAACGCGGG
1 TTT-AAATTTCGCAACACGAA
393155 TTTAAATTTCGCAACACGAA
1 TTTAAATTTCGCAACACGAA
*** * *
393175 TTTCGTTTTTGCAACGCGAA
1 TTTAAATTTCGCAACACGAA
* *
393195 TTTAAATTTCGCAACTC-AGC
1 TTTAAATTTCGCAACACGA-A
*
393215 TTTTAATTTCGCAACAC
1 TTTAAATTTCGCAACAC
393232 AAATATTTTG
Statistics
Matches: 159, Mismatches: 47, Indels: 24
0.69 0.20 0.10
Matches are distributed among these distances:
18 3 0.02
19 8 0.05
20 121 0.76
21 12 0.08
22 15 0.09
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.33
Consensus pattern (20 bp):
TTTAAATTTCGCAACACGAA
Found at i:399351 original size:20 final size:21
Alignment explanation
Indices: 399326--399377 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
399316 TTTTCCCAAT
*
399326 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
399346 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
399367 TCGCAATGCGA
1 TCGCAATGCGA
399378 TACTGACTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:399391 original size:20 final size:20
Alignment explanation
Indices: 399366--399500 Score: 130
Period size: 20 Copynumber: 6.7 Consensus size: 20
399356 AATTGGGAAA
399366 ATCGCAATGCGATACTGACT
1 ATCGCAATGCGATACTGACT
*
399386 ATCGCAATGCGATACTTACT
1 ATCGCAATGCGATACTGACT
* *
399406 ATCGCAATGCGATAAT-ACAAA
1 ATCGCAATGCGATACTGAC--T
* *
399427 ATCGCAACGAGATACTGACT
1 ATCGCAATGCGATACTGACT
* * *
399447 TTCGCAACGCGATTCTGACT
1 ATCGCAATGCGATACTGACT
* *
399467 TTCGCAATGCGATAAT-ACAT
1 ATCGCAATGCGATACTGAC-T
399487 AATCGCAATGCGAT
1 -ATCGCAATGCGAT
399501 TTTCAAAGCG
Statistics
Matches: 96, Mismatches: 14, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
19 4 0.04
20 65 0.68
21 25 0.26
22 2 0.02
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (20 bp):
ATCGCAATGCGATACTGACT
Found at i:399410 original size:61 final size:61
Alignment explanation
Indices: 399363--399494 Score: 192
Period size: 61 Copynumber: 2.2 Consensus size: 61
399353 GCGAATTGGG
* * * *
399363 AAAATCGCAATGCGATACTGACTATCGCAATGCGATACTTACTATCGCAATGCGATAATAC
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAATGCGATAATAC
* * *
399424 AAAATCGCAACGAGATACTGACTTTCGCAACGCGATTCTGACTTTCGCAATGCGATAATAC
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAATGCGATAATAC
*
399485 ATAATCGCAA
1 AAAATCGCAA
399495 TGCGATTTTC
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
61 63 1.00
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (61 bp):
AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAATGCGATAATAC
Found at i:399696 original size:22 final size:22
Alignment explanation
Indices: 399668--399711 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
399658 CACTCTCTCA
399668 CCCATCTCCGACGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
*
399690 CCCATCTCCGGCGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
399712 TATCTCCATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.45, G:0.16, T:0.18
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:400028 original size:20 final size:20
Alignment explanation
Indices: 399974--400032 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
399964 GCGATTCTCT
**
399974 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCATTTTCG
399994 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
* **
400014 TGTTGCGATTTTCATTTTC
1 CGTTGCGATAGTCATTTTC
400033 AGAAACTATT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.17, C:0.19, G:0.22, T:0.42
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTTCG
Found at i:400223 original size:25 final size:24
Alignment explanation
Indices: 400169--400223 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
400159 TGTTTATTAT
* *
400169 TGTTTTTGGTATATCTTCACAGTG
1 TGTTTTTGGTATATCTTAACAGTA
400193 TAGTTTTTGGTATATC-TAACTTAGTA
1 T-GTTTTTGGTATATCTTAAC--AGTA
400219 TGTTT
1 TGTTT
400224 ATTGTTTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 4 0.15
25 18 0.69
26 4 0.15
ACGTcount: A:0.20, C:0.09, G:0.18, T:0.53
Consensus pattern (24 bp):
TGTTTTTGGTATATCTTAACAGTA
Found at i:401373 original size:18 final size:18
Alignment explanation
Indices: 401352--401396 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
401342 TCCACTTCAG
*
401352 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCACCCA
*
401370 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
401388 GAGCCATCA
1 GAGCCATCA
401397 TCTGATCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.27, C:0.44, G:0.16, T:0.13
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:401903 original size:20 final size:20
Alignment explanation
Indices: 401878--401923 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
401868 TAGTTTACTT
401878 TCGCAACAC-GAAAATGACTA
1 TCGCAACACTG-AAATGACTA
* *
401898 TCGCAACGCTGAAATGGCTA
1 TCGCAACACTGAAATGACTA
401918 TCGCAA
1 TCGCAA
401924 TGCGAAATGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 22 0.96
21 1 0.04
ACGTcount: A:0.37, C:0.26, G:0.20, T:0.17
Consensus pattern (20 bp):
TCGCAACACTGAAATGACTA
Found at i:401932 original size:19 final size:20
Alignment explanation
Indices: 401889--401944 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
401879 CGCAACACGA
401889 AAATGACTATCGCAACGCTG
1 AAATGACTATCGCAACGCTG
* *
401909 AAATGGCTATCGCAATGC-G
1 AAATGACTATCGCAACGCTG
**
401928 AAATGAAAATCGCAACG
1 AAATGACTATCGCAACG
401945 ACAAAATCGC
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.18
Consensus pattern (20 bp):
AAATGACTATCGCAACGCTG
Found at i:401952 original size:14 final size:13
Alignment explanation
Indices: 401933--401969 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 13
401923 ATGCGAAATG
401933 AAAATCGCAACGAC
1 AAAATCGCAACG-C
401947 AAAATCGCAACGC
1 AAAATCGCAACGC
*
401960 GAAATCGCAA
1 AAAATCGCAA
401970 TGCGATTTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.49, C:0.27, G:0.16, T:0.08
Consensus pattern (13 bp):
AAAATCGCAACGC
Found at i:401966 original size:13 final size:13
Alignment explanation
Indices: 401934--401974 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
401924 TGCGAAATGA
*
401934 AAATCGCAACGACA
1 AAATCGCAACG-CG
401948 AAATCGCAACGCG
1 AAATCGCAACGCG
*
401961 AAATCGCAATGCG
1 AAATCGCAACGCG
401974 A
1 A
401975 TTTGTGTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 14 0.56
14 11 0.44
ACGTcount: A:0.44, C:0.27, G:0.20, T:0.10
Consensus pattern (13 bp):
AAATCGCAACGCG
Found at i:402046 original size:20 final size:19
Alignment explanation
Indices: 402012--402067 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
402002 TTGCGATTTT
*
402012 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
402031 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
402051 CATTTTCGCGTTGCGAT
1 CA-TTTCGCGTTGCGAT
402068 TTTAAGTTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
19 5 0.15
20 25 0.76
21 3 0.09
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:402529 original size:41 final size:41
Alignment explanation
Indices: 402433--402520 Score: 131
Period size: 41 Copynumber: 2.1 Consensus size: 41
402423 GACTCACCTG
* * *
402433 TCATCCCTCAAGAGTCCCCTCCAATCGTTCAAGAGGCCCCTA
1 TCATCCCTCAAGAGTCCCC-CCCACCGTTCAAGAGGCCACTA
*
402475 TCCTCCCTCAAGAGTCCCCCCCACCGTTCAAGAGGCCACTA
1 TCATCCCTCAAGAGTCCCCCCCACCGTTCAAGAGGCCACTA
402516 TCATC
1 TCATC
402521 GTTGAAGAGG
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
41 23 0.56
42 18 0.44
ACGTcount: A:0.23, C:0.43, G:0.14, T:0.20
Consensus pattern (41 bp):
TCATCCCTCAAGAGTCCCCCCCACCGTTCAAGAGGCCACTA
Found at i:403955 original size:14 final size:14
Alignment explanation
Indices: 403936--403971 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
403926 ATTGTTTAAT
403936 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
403950 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
403964 TGATTTGT
1 TGATTTGT
403972 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:404200 original size:20 final size:20
Alignment explanation
Indices: 404175--404250 Score: 73
Period size: 20 Copynumber: 3.8 Consensus size: 20
404165 TCGCATTGCG
*
404175 ATTTTCTAGTTGCGATAGCC
1 ATTTTCGAGTTGCGATAGCC
* ***
404195 ATTTTCGCGTTGCGATTTTTC
1 ATTTTCGAGTTGCGA-TAGCC
*
404216 A-TTTCGAATTGCGATAGCC
1 ATTTTCGAGTTGCGATAGCC
*
404235 ATTTTCGCGTTGCGAT
1 ATTTTCGAGTTGCGAT
404251 TTCCCCGTTG
Statistics
Matches: 42, Mismatches: 12, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
19 3 0.07
20 36 0.86
21 3 0.07
ACGTcount: A:0.17, C:0.20, G:0.21, T:0.42
Consensus pattern (20 bp):
ATTTTCGAGTTGCGATAGCC
Found at i:404208 original size:34 final size:34
Alignment explanation
Indices: 404163--404266 Score: 109
Period size: 40 Copynumber: 2.9 Consensus size: 34
404153 GTGATTTTCA
*
404163 TTTCGCATTGCGATTTTCTAGTTGCGATAGCCAT
1 TTTCGCGTTGCGATTTTCTAGTTGCGATAGCCAT
*
404197 TTTCGCGTTGCGATTTTTCATTTCGAATTGCGATAGCCAT
1 TTTCGCGTTGCGA-TTTTC---T--AGTTGCGATAGCCAT
* **
404237 TTTCGCGTTGCGATTTCCCCGTTGCGATAG
1 TTTCGCGTTGCGATTTTCTAGTTGCGATAG
404267 TCAAATGAAT
Statistics
Matches: 58, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
34 21 0.36
35 5 0.09
38 1 0.02
39 4 0.07
40 27 0.47
ACGTcount: A:0.15, C:0.22, G:0.22, T:0.40
Consensus pattern (34 bp):
TTTCGCGTTGCGATTTTCTAGTTGCGATAGCCAT
Found at i:404489 original size:20 final size:20
Alignment explanation
Indices: 404464--404554 Score: 74
Period size: 20 Copynumber: 4.5 Consensus size: 20
404454 TTGAAGATGA
404464 TTGCGATTTTCAGAATCTCG
1 TTGCGATTTTCAGAATCTCG
***
404484 TTGCGAAAGTCAGAATCTCG
1 TTGCGATTTTCAGAATCTCG
* **
404504 TTGCGATTTTGTATTATCTCG
1 TTGCGATTTT-CAGAATCTCG
** * * *
404525 TTGCGATAGTCAGTATCGCA
1 TTGCGATTTTCAGAATCTCG
404545 TTGCGATTTT
1 TTGCGATTTT
404555 TCAAATTCGC
Statistics
Matches: 53, Mismatches: 17, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
20 38 0.72
21 15 0.28
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.40
Consensus pattern (20 bp):
TTGCGATTTTCAGAATCTCG
Found at i:404584 original size:20 final size:21
Alignment explanation
Indices: 404540--404591 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
404530 ATAGTCAGTA
*
404540 TCGCATTGCGATTTTTCAAAT
1 TCGCATTGCGATTTTACAAAT
**
404561 TCGCATTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTACAAAT
404581 TCGCATTGCGA
1 TCGCATTGCGA
404592 ATTAGGAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.40
Consensus pattern (21 bp):
TCGCATTGCGATTTTACAAAT
Found at i:404807 original size:12 final size:12
Alignment explanation
Indices: 404788--404821 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
404778 CTCTCCGGCG
404788 ACATCCGTTCCT
1 ACATCCGTTCCT
*
404800 ATATCCGTTCCT
1 ACATCCGTTCCT
404812 ACATCC-TTCC
1 ACATCCGTTCC
404822 CCATCCGGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 4 0.20
12 16 0.80
ACGTcount: A:0.18, C:0.41, G:0.06, T:0.35
Consensus pattern (12 bp):
ACATCCGTTCCT
Found at i:405403 original size:24 final size:24
Alignment explanation
Indices: 405376--405429 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
405366 GTATTCGAAA
*
405376 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGGTCAATACCCGGAC
* *
405400 TTTGATATTGGTCAATACTCGGAT
1 TTTGATATTGGTCAATACCCGGAC
405424 TTTGAT
1 TTTGAT
405430 GATGTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATATTGGTCAATACCCGGAC
Found at i:405621 original size:12 final size:12
Alignment explanation
Indices: 405604--405628 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
405594 ATATAATCCT
405604 GAAGAAGAAAAA
1 GAAGAAGAAAAA
405616 GAAGAAGAAAAA
1 GAAGAAGAAAAA
405628 G
1 G
405629 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:407941 original size:19 final size:19
Alignment explanation
Indices: 407919--408049 Score: 94
Period size: 19 Copynumber: 7.7 Consensus size: 19
407909 GGAAATTACT
407919 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
407938 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
407952 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
* *
407971 ATCGCAA--CG--CT-AAT
1 ATCGCAATGCGAAATGAAA
*
407985 TTCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
**
408004 ATCGCAA--CG--A-GGGA
1 ATCGCAATGCGAAATGAAA
408018 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
408037 ATCGCAACGCGAA
1 ATCGCAATGCGAA
408050 TTTAATTTCG
Statistics
Matches: 84, Mismatches: 13, Indels: 30
0.66 0.10 0.24
Matches are distributed among these distances:
14 27 0.32
15 3 0.04
16 6 0.07
17 6 0.07
18 3 0.04
19 39 0.46
ACGTcount: A:0.43, C:0.20, G:0.23, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:407961 original size:33 final size:33
Alignment explanation
Indices: 407919--408045 Score: 202
Period size: 33 Copynumber: 3.8 Consensus size: 33
407909 GGAAATTACT
407919 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
**
407952 ATCGCAATGCGAAATGAAAATCGCAACGCTA-A
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* *
407984 TTTCGCAATGCGAAATGAAAATCGCAACGAGGGA
1 -ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
408018 ATCGCAATGCGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
408046 CGAATTTAAT
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
32 1 0.01
33 83 0.98
34 1 0.01
ACGTcount: A:0.43, C:0.20, G:0.23, T:0.15
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:408026 original size:66 final size:66
Alignment explanation
Indices: 407920--408052 Score: 248
Period size: 66 Copynumber: 2.0 Consensus size: 66
407910 GAAATTACTA
*
407920 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCTAAT
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
407985 T
66 T
*
407986 TCGCAATGCGAAATGAAAATCGCAACGAGGGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
408051 T
66 T
408052 T
1 T
408053 AATTTCGTGT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.41, C:0.20, G:0.23, T:0.17
Consensus pattern (66 bp):
TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
T
Found at i:408098 original size:19 final size:19
Alignment explanation
Indices: 408074--408134 Score: 60
Period size: 19 Copynumber: 3.5 Consensus size: 19
408064 GCGATTCTCT
408074 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
* *
408093 CGTTGC-A-ATTC---TCT
1 CGTTGCGATTTTCATTTCG
408107 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
408126 CATTGCGAT
1 CGTTGCGAT
408135 AGTACTTTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 10
0.68 0.11 0.21
Matches are distributed among these distances:
14 8 0.25
15 1 0.03
16 3 0.09
17 3 0.09
18 1 0.03
19 16 0.50
ACGTcount: A:0.13, C:0.23, G:0.20, T:0.44
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:408098 original size:33 final size:33
Alignment explanation
Indices: 408045--408134 Score: 135
Period size: 33 Copynumber: 2.7 Consensus size: 33
408035 AAATCGCAAC
* * *
408045 GCGAATTTAATTTCGTGTTGCGATTCTCTCGTT
1 GCGATTTTCATTTCGCGTTGCGATTCTCTCGTT
*
408078 GCGATTTTCATTTCGCGTTGCAATTCTCTCGTT
1 GCGATTTTCATTTCGCGTTGCGATTCTCTCGTT
*
408111 GCGATTTTCATTTCGCATTGCGAT
1 GCGATTTTCATTTCGCGTTGCGAT
408135 AGTACTTTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 51 1.00
ACGTcount: A:0.14, C:0.21, G:0.20, T:0.44
Consensus pattern (33 bp):
GCGATTTTCATTTCGCGTTGCGATTCTCTCGTT
Found at i:408260 original size:14 final size:14
Alignment explanation
Indices: 408241--408277 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
408231 CATCAATTAA
408241 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
408255 ACAAATCACCTTTT
1 ACAAATCAACTTTT
408269 ACAAATCAA
1 ACAAATCAA
408278 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:409678 original size:21 final size:21
Alignment explanation
Indices: 409654--409769 Score: 56
Period size: 21 Copynumber: 5.5 Consensus size: 21
409644 GTGGGAGGGA
409654 CCTCTTCAACGATGACAGTGG
1 CCTCTTCAACGATGACAGTGG
* * ** *
409675 CCTCTTGAACGGTGGGAGGGG
1 CCTCTTCAACGATGACAGTGG
* * * *
409696 ACTC-TCAAGGAATGATAGGGG
1 CCTCTTCAACG-ATGACAGTGG
* *
409717 CCTCTTCAACGAT-AGGAGTTG
1 CCTCTTCAACGATGA-CAGTGG
* * **
409738 ACTCTTGAGGGATGACAGTGG
1 CCTCTTCAACGATGACAGTGG
*
409759 CCTCTTGAACG
1 CCTCTTCAACG
409770 GTGGGAGGGG
Statistics
Matches: 66, Mismatches: 25, Indels: 8
0.67 0.25 0.08
Matches are distributed among these distances:
20 5 0.08
21 55 0.83
22 6 0.09
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (21 bp):
CCTCTTCAACGATGACAGTGG
Found at i:409693 original size:42 final size:41
Alignment explanation
Indices: 409634--409839 Score: 166
Period size: 42 Copynumber: 4.9 Consensus size: 41
409624 GTGAATCGGG
* *
409634 CTCTTGAATGGTGGGAGGGACCTCTTCAACGATGACAGTGGC
1 CTCTTGAACGGTGGGAGGGA-CTCTTCAAGGATGACAGTGGC
* *
409676 CTCTTGAACGGTGGGAGGGGACTC-TCAAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGA-GGGACTCTTCAAGG-ATGACAGTGGC
* * * * * *
409718 CTCTTCAACGATAGGAGTTGACTCTTGAGGGATGACAGTGGC
1 CTCTTGAACGGTGGGAG-GGACTCTTCAAGGATGACAGTGGC
* *
409760 CTCTTGAACGGTGGGAGGGGACTC-TCGAGGAATGATAG-GAGC
1 CTCTTGAACGGTGGGA-GGGACTCTTCAAGG-ATGACAGTG-GC
* * * * *
409802 CTCTTTAACGATAGGAGTGGACTCTTGAGGGATGACAG
1 CTCTTGAACGGTGGGAG-GGACTCTTCAAGGATGACAG
409840 GCGAGTCGGG
Statistics
Matches: 128, Mismatches: 27, Indels: 18
0.74 0.16 0.10
Matches are distributed among these distances:
41 11 0.09
42 105 0.82
43 12 0.09
ACGTcount: A:0.24, C:0.18, G:0.35, T:0.23
Consensus pattern (41 bp):
CTCTTGAACGGTGGGAGGGACTCTTCAAGGATGACAGTGGC
Found at i:409775 original size:84 final size:84
Alignment explanation
Indices: 409664--409839 Score: 316
Period size: 84 Copynumber: 2.1 Consensus size: 84
409654 CCTCTTCAAC
*
409664 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCAAGGAATGATAGGGGCCTCTTCAACGA
1 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCAAGGAATGATAGGAGCCTCTTCAACGA
*
409729 TAGGAGTTGACTCTTGAGG
66 TAGGAGTGGACTCTTGAGG
* *
409748 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGAGCCTCTTTAACGA
1 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCAAGGAATGATAGGAGCCTCTTCAACGA
409813 TAGGAGTGGACTCTTGAGG
66 TAGGAGTGGACTCTTGAGG
409832 GATGACAG
1 GATGACAG
409840 GCGAGTCGGG
Statistics
Matches: 88, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
84 88 1.00
ACGTcount: A:0.24, C:0.17, G:0.36, T:0.22
Consensus pattern (84 bp):
GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCAAGGAATGATAGGAGCCTCTTCAACGA
TAGGAGTGGACTCTTGAGG
Found at i:410168 original size:93 final size:89
Alignment explanation
Indices: 410059--410241 Score: 294
Period size: 93 Copynumber: 2.0 Consensus size: 89
410049 ATTTCAAACT
* *
410059 TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGTTTAGC
1 TTCAACCAAAAGACAAAAAAAAGACAAATACTAACTTCACAGTGTT----AATAAACAGTTTAGC
410124 AGAATTGACAGCAACCGAATAAATTTAC
62 AGAATTGACAGCAACCGAATAAATTTAC
*
410152 TTCAACCAAAAGACAAAAAAAAGACAAATACTAACTTCACAGTGTTAATAAACAGTTTAGCAGTA
1 TTCAACCAAAAGACAAAAAAAAGACAAATACTAACTTCACAGTGTTAATAAACAGTTTAGCAGAA
*
410217 TTGGCAGCAACCGAATAAATTTAC
66 TTGACAGCAACCGAATAAATTTAC
410241 T
1 T
410242 AAGCAATCTA
Statistics
Matches: 86, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
89 41 0.48
93 45 0.52
ACGTcount: A:0.48, C:0.19, G:0.12, T:0.22
Consensus pattern (89 bp):
TTCAACCAAAAGACAAAAAAAAGACAAATACTAACTTCACAGTGTTAATAAACAGTTTAGCAGAA
TTGACAGCAACCGAATAAATTTAC
Found at i:412010 original size:33 final size:33
Alignment explanation
Indices: 411953--412051 Score: 153
Period size: 33 Copynumber: 3.0 Consensus size: 33
411943 ACGAGATAAT
*
411953 GAGAATCGCAACGCGGAAATGACTATTGCAACGA
1 GAGAATCGCAACGC-GAAATGACTATCGCAACGA
*
411987 GAGAATCGCAACGCGAAATGACTATCGCGACGA
1 GAGAATCGCAACGCGAAATGACTATCGCAACGA
**
412020 GAGAATCGCAACGCGAAATGAAAATCGCAACG
1 GAGAATCGCAACGCGAAATGACTATCGCAACG
412052 CGAAATGAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
33 46 0.77
34 14 0.23
ACGTcount: A:0.39, C:0.22, G:0.26, T:0.12
Consensus pattern (33 bp):
GAGAATCGCAACGCGAAATGACTATCGCAACGA
Found at i:412045 original size:19 final size:19
Alignment explanation
Indices: 412023--412073 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
412013 GCGACGAGAG
412023 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
412042 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
412061 AATCGCAATGCGA
1 AATCGCAACGCGA
412074 TTTTGGTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.45, C:0.22, G:0.22, T:0.12
Consensus pattern (19 bp):
AATCGCAACGCGAAATGAA
Found at i:412091 original size:19 final size:19
Alignment explanation
Indices: 412069--412115 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
412059 AAAATCGCAA
* *
412069 TGCGATTTTGGTTTTACGT
1 TGCGATTTTGATTTCACGT
* *
412088 TGCGATTTTTATTTCGCGT
1 TGCGATTTTGATTTCACGT
412107 TGCGATTTT
1 TGCGATTTT
412116 CATTCTCGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.11, C:0.13, G:0.23, T:0.53
Consensus pattern (19 bp):
TGCGATTTTGATTTCACGT
Found at i:413813 original size:27 final size:27
Alignment explanation
Indices: 413775--413829 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 27
413765 TACCCTGATG
413775 AAGTTGCTCGAACCATG-TCTTGCTACC
1 AAGTTGCTCGAACCATGTTC-TGCTACC
*
413802 AAGTTGCTCGAACTATGTTCTGCTACC
1 AAGTTGCTCGAACCATGTTCTGCTACC
413829 A
1 A
413830 TGATACTACA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 24 0.92
28 2 0.08
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (27 bp):
AAGTTGCTCGAACCATGTTCTGCTACC
Found at i:413959 original size:27 final size:27
Alignment explanation
Indices: 413909--413960 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
413899 TTCGAGTAGC
*
413909 TAACAGGGCATGGTTCGAGAAACTTAG
1 TAACAGGGCATGATTCGAGAAACTTAG
* * *
413936 TAACATGGCATGATTTGAGTAACTT
1 TAACAGGGCATGATTCGAGAAACTT
413961 TATCGAGGTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.29
Consensus pattern (27 bp):
TAACAGGGCATGATTCGAGAAACTTAG
Found at i:414035 original size:27 final size:27
Alignment explanation
Indices: 414005--414080 Score: 127
Period size: 27 Copynumber: 2.8 Consensus size: 27
413995 AGTGCAACAA
414005 GGCATGGCTTGAGCAACTTAATAGCTG
1 GGCATGGCTTGAGCAACTTAATAGCTG
414032 GGCATGGCTTGAGCAACTTAATAGCTG
1 GGCATGGCTTGAGCAACTTAATAGCTG
*
414059 GGCATGG-TTCGAACAACTTAAT
1 GGCATGGCTT-GAGCAACTTAAT
414081 CAGGGTAACA
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 2 0.04
27 45 0.96
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (27 bp):
GGCATGGCTTGAGCAACTTAATAGCTG
Found at i:414484 original size:20 final size:20
Alignment explanation
Indices: 414459--414512 Score: 53
Period size: 19 Copynumber: 2.8 Consensus size: 20
414449 GTTGCGCAAC
414459 ATTTTTTTGTTATTTTTA-T
1 ATTTTTTTGTTATTTTTACT
414478 GATTTTTGTT-TT-TTTTTACT
1 -ATTTTT-TTGTTATTTTTACT
*
414498 -TTCTTTTGTTATTTT
1 ATTTTTTTGTTATTTT
414513 CTTTTTCTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 9
0.74 0.03 0.23
Matches are distributed among these distances:
17 2 0.07
18 6 0.21
19 10 0.34
20 9 0.31
21 2 0.07
ACGTcount: A:0.11, C:0.04, G:0.07, T:0.78
Consensus pattern (20 bp):
ATTTTTTTGTTATTTTTACT
Found at i:414638 original size:15 final size:17
Alignment explanation
Indices: 414618--414649 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
414608 CATAATATAA
414618 TAAATT-CAAG-TAGAT
1 TAAATTGCAAGATAGAT
414633 TAAATTGCAAGATAGAT
1 TAAATTGCAAGATAGAT
414650 AAAAGTACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 4 0.27
17 5 0.33
ACGTcount: A:0.47, C:0.06, G:0.16, T:0.31
Consensus pattern (17 bp):
TAAATTGCAAGATAGAT
Found at i:416180 original size:22 final size:21
Alignment explanation
Indices: 416128--416180 Score: 70
Period size: 22 Copynumber: 2.5 Consensus size: 21
416118 CGGTTCAACC
*
416128 TAAATTTTTTTTATTTTTTAT
1 TAAATTTTTTTGATTTTTTAT
*
416149 TAAATATTTTTGATATTTTTAT
1 TAAATTTTTTTGAT-TTTTTAT
*
416171 TTAATTTTTT
1 TAAATTTTTT
416181 AAATAATTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
21 12 0.44
22 15 0.56
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (21 bp):
TAAATTTTTTTGATTTTTTAT
Found at i:420181 original size:12 final size:12
Alignment explanation
Indices: 420166--420207 Score: 66
Period size: 12 Copynumber: 3.5 Consensus size: 12
420156 TATTATCTGG
420166 TTTATAAATTTA
1 TTTATAAATTTA
*
420178 TTTATAAACTTA
1 TTTATAAATTTA
*
420190 TTTATAAATTCA
1 TTTATAAATTTA
420202 TTTATA
1 TTTATA
420208 TGATTCTCTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (12 bp):
TTTATAAATTTA
Found at i:425180 original size:14 final size:14
Alignment explanation
Indices: 425145--425185 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
425135 CATCCAAATC
*
425145 CTAATATTATTTAA
1 CTAATATTATTTAT
425159 CT-ATATTATTTAT
1 CTAATATTATTTAT
*
425172 TTAATATTATTTAT
1 CTAATATTATTTAT
425186 AAATCAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (14 bp):
CTAATATTATTTAT
Found at i:425763 original size:21 final size:22
Alignment explanation
Indices: 425731--425784 Score: 108
Period size: 22 Copynumber: 2.5 Consensus size: 22
425721 CAGAGGGAAT
425731 CGATTCCCCCCCAAGGGGGTAC
1 CGATTCCCCCCCAAGGGGGTAC
425753 CGATTCCCCCCCAAGGGGGTAC
1 CGATTCCCCCCCAAGGGGGTAC
425775 CGATTCCCCC
1 CGATTCCCCC
425785 TGAATGGTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.17, C:0.44, G:0.24, T:0.15
Consensus pattern (22 bp):
CGATTCCCCCCCAAGGGGGTAC
Found at i:431634 original size:20 final size:20
Alignment explanation
Indices: 431609--431662 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
431599 TTTGGTGCAG
*
431609 AGGGAATCGATTTCTCCTTT
1 AGGGAACCGATTTCTCCTTT
*
431629 AGGGAACCGATTCCTCCTTT
1 AGGGAACCGATTTCTCCTTT
431649 AGGGAACCGATTTC
1 AGGGAACCGATTTC
431663 CCCCACAGGG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.31
Consensus pattern (20 bp):
AGGGAACCGATTTCTCCTTT
Found at i:431674 original size:21 final size:21
Alignment explanation
Indices: 431650--431722 Score: 128
Period size: 21 Copynumber: 3.5 Consensus size: 21
431640 TCCTCCTTTA
431650 GGGAACCGATTTCCCCCACAG
1 GGGAACCGATTTCCCCCACAG
431671 GGGAACCGATTTCCCCCACAG
1 GGGAACCGATTTCCCCCACAG
*
431692 GGGAACCGATTCCCCCCACAG
1 GGGAACCGATTTCCCCCACAG
*
431713 GGGAATCGAT
1 GGGAACCGAT
431723 ACCCCCTGGG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 50 1.00
ACGTcount: A:0.25, C:0.36, G:0.26, T:0.14
Consensus pattern (21 bp):
GGGAACCGATTTCCCCCACAG
Found at i:432045 original size:34 final size:32
Alignment explanation
Indices: 431992--432061 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 32
431982 ACCTTACAAC
*
431992 TCCCTAGTTTTTCCGGGCTAAACTAGAACCTT
1 TCCCTAGTTTTACCGGGCTAAACTAGAACCTT
*
432024 TCCCTAGCTTTTACACGGGCTAAGCTAGAACCTT
1 TCCCTAG-TTTTAC-CGGGCTAAACTAGAACCTT
432058 TCCC
1 TCCC
432062 CTTTACAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 7 0.21
33 5 0.15
34 22 0.65
ACGTcount: A:0.21, C:0.31, G:0.16, T:0.31
Consensus pattern (32 bp):
TCCCTAGTTTTACCGGGCTAAACTAGAACCTT
Found at i:432370 original size:21 final size:21
Alignment explanation
Indices: 432344--432385 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
432334 CCATAATGGG
*
432344 GGGAATCGGTACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
432365 GGGAATCGATACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
432386 ATATTCAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (21 bp):
GGGAATCGATACCCCTTCATA
Found at i:432515 original size:19 final size:18
Alignment explanation
Indices: 432491--432540 Score: 73
Period size: 19 Copynumber: 2.7 Consensus size: 18
432481 GAGCCTCGGG
432491 TTACTGTTCAAACAGTGAT
1 TTACTGTTCAAA-AGTGAT
*
432510 TTACTGTTCGAAAAGTTAT
1 TTACTGTTC-AAAAGTGAT
432529 TTACTGTTCAAA
1 TTACTGTTCAAA
432541 TAGTAAATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 3 0.10
19 23 0.79
20 3 0.10
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (18 bp):
TTACTGTTCAAAAGTGAT
Found at i:432551 original size:19 final size:18
Alignment explanation
Indices: 432491--432557 Score: 71
Period size: 19 Copynumber: 3.6 Consensus size: 18
432481 GAGCCTCGGG
*
432491 TTACTGTTCAAACAGTGAT
1 TTACTGTTCAAA-AGTAAT
*
432510 TTACTGTTCGAAAAGTTAT
1 TTACTGTTC-AAAAGTAAT
*
432529 TTACTGTTCAAATAGTAAA
1 TTACTGTTCAAA-AGTAAT
*
432548 TTACTATTCA
1 TTACTGTTCA
432558 TAAAAACATT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
18 3 0.07
19 36 0.86
20 3 0.07
ACGTcount: A:0.34, C:0.13, G:0.12, T:0.40
Consensus pattern (18 bp):
TTACTGTTCAAAAGTAAT
Found at i:432673 original size:30 final size:31
Alignment explanation
Indices: 432622--432712 Score: 159
Period size: 31 Copynumber: 3.0 Consensus size: 31
432612 AAATTTTGAA
*
432622 TAAATTCAATT-AAGTCTAAAAA-CATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
432651 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
432682 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
432713 CCTTAAATTG
Statistics
Matches: 59, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
29 11 0.19
30 10 0.17
31 38 0.64
ACGTcount: A:0.43, C:0.16, G:0.07, T:0.34
Consensus pattern (31 bp):
TAAATTCAATTCAAGTCCAAAAACCATTTTG
Found at i:437219 original size:20 final size:20
Alignment explanation
Indices: 437196--437243 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
437186 GGTTGGTAGC
437196 TGACAAAACCGGTTGAAATT
1 TGACAAAACCGGTTGAAATT
* **
437216 TGACAAAACTGGTTTCAATT
1 TGACAAAACCGGTTGAAATT
437236 TGACAAAA
1 TGACAAAA
437244 TCGATAAAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.42, C:0.15, G:0.17, T:0.27
Consensus pattern (20 bp):
TGACAAAACCGGTTGAAATT
Found at i:438559 original size:18 final size:18
Alignment explanation
Indices: 438538--438580 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
438528 CAAAACCTTC
438538 TTCTCAACCAATGTCATT
1 TTCTCAACCAATGTCATT
*
438556 TTCTCAACCAATGTCCTT
1 TTCTCAACCAATGTCATT
438574 TTCTCAA
1 TTCTCAA
438581 TTAAGGTCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.26, C:0.30, G:0.05, T:0.40
Consensus pattern (18 bp):
TTCTCAACCAATGTCATT
Found at i:443820 original size:21 final size:21
Alignment explanation
Indices: 443784--443865 Score: 76
Period size: 21 Copynumber: 3.9 Consensus size: 21
443774 TTTGGTGCAG
*
443784 AGGGAATCGA-TCCCCCCATA
1 AGGGAACCGATTCCCCCCATA
**
443804 AGGGAACCGATTCCCCCTTTGA
1 AGGGAACCGATTCCCCCCAT-A
*
443826 AGGGGAACCGATTCCCCCCACA
1 A-GGGAACCGATTCCCCCCATA
* * *
443848 GGGGAATCGATACCCCCC
1 AGGGAACCGATTCCCCCC
443866 TGGGGTTCTG
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
20 9 0.18
21 22 0.44
22 3 0.06
23 16 0.32
ACGTcount: A:0.26, C:0.37, G:0.23, T:0.15
Consensus pattern (21 bp):
AGGGAACCGATTCCCCCCATA
Found at i:450659 original size:6 final size:6
Alignment explanation
Indices: 450605--450695 Score: 69
Period size: 6 Copynumber: 15.2 Consensus size: 6
450595 TTGAGTTCCC
* * * *
450605 TGTATA AGTATA CGTATA CT-TATA CT-TATA CGTATA TGTATA CGTATA
1 TGTATA TGTATA TGTATA -TGTATA -TGTATA TGTATA TGTATA TGTATA
* * * * *
450653 TGTATA TATATA TATATA TGTATA TGCATA TGCATA TGCATA T
1 TGTATA TGTATA TGTATA TGTATA TGTATA TGTATA TGTATA T
450696 CTTCTTTATC
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
6 73 1.00
ACGTcount: A:0.36, C:0.09, G:0.12, T:0.43
Consensus pattern (6 bp):
TGTATA
Found at i:465872 original size:109 final size:108
Alignment explanation
Indices: 465682--465887 Score: 331
Period size: 109 Copynumber: 1.9 Consensus size: 108
465672 CATGACTTCT
* * *
465682 TTCATTGAGATTTACTATTTAAGAGACATTTACTTTGTATGATTTGTTATAGTATACAAGTCTTT
1 TTCATTGAGATTTACTATTTAAGAGACATTTACTTTGCATGATTTGTTATAATATACAAGTCTCT
465747 TGTTTGTAATAATGATTTAATCTAGATATCTCGTATATAGTGA
66 TGTTTGTAATAATGATTTAATCTAGATATCTCGTATATAGTGA
* **
465790 TTCATTGAGATTTACTATTTAAGATATTTTTGACTTTGCATGATTTGTTATAATATACAAGTCTC
1 TTCATTGAGATTTACTATTTAAGAGACATTT-ACTTTGCATGATTTGTTATAATATACAAGTCTC
* *
465855 TTGTTTGTAATAGTGATTTAATTTAGATATCTC
65 TTGTTTGTAATAATGATTTAATCTAGATATCTC
465888 ATATTTTATT
Statistics
Matches: 89, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
108 28 0.31
109 61 0.69
ACGTcount: A:0.30, C:0.09, G:0.14, T:0.48
Consensus pattern (108 bp):
TTCATTGAGATTTACTATTTAAGAGACATTTACTTTGCATGATTTGTTATAATATACAAGTCTCT
TGTTTGTAATAATGATTTAATCTAGATATCTCGTATATAGTGA
Found at i:476750 original size:21 final size:21
Alignment explanation
Indices: 476724--476763 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
476714 CCCCATTTGA
*
476724 AGGGGAATCGATTCCCCCCAC
1 AGGGGAATCGATACCCCCCAC
476745 AGGGGAATCGATACCCCCC
1 AGGGGAATCGATACCCCCC
476764 TGGGGTTCTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.38, G:0.25, T:0.12
Consensus pattern (21 bp):
AGGGGAATCGATACCCCCCAC
Found at i:479972 original size:16 final size:16
Alignment explanation
Indices: 479951--479982 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
479941 AAGAGTTGGG
479951 GTATACTCTTGAGGGA
1 GTATACTCTTGAGGGA
479967 GTATACTCTTGAGGGA
1 GTATACTCTTGAGGGA
479983 ATTGTAAGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.12, G:0.31, T:0.31
Consensus pattern (16 bp):
GTATACTCTTGAGGGA
Found at i:480938 original size:23 final size:23
Alignment explanation
Indices: 480912--480976 Score: 60
Period size: 29 Copynumber: 2.6 Consensus size: 23
480902 AAGATAATGA
480912 TATTTTTTCTAATACACTTGAAT
1 TATTTTTTCTAATACACTTGAAT
*
480935 TATTTTTAAAATCTTAATTACCCTTGAAT
1 TATTTTT----TC-TAA-TACACTTGAAT
480964 TATTTTTT-TAATA
1 TATTTTTTCTAATA
480977 GAAACCATCA
Statistics
Matches: 35, Mismatches: 1, Indels: 13
0.71 0.02 0.27
Matches are distributed among these distances:
22 2 0.06
23 10 0.29
25 1 0.03
27 2 0.06
28 3 0.09
29 17 0.49
ACGTcount: A:0.32, C:0.11, G:0.03, T:0.54
Consensus pattern (23 bp):
TATTTTTTCTAATACACTTGAAT
Found at i:486217 original size:20 final size:20
Alignment explanation
Indices: 486194--486245 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
486184 AACGCGATCC
486194 CCAGAATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTT
486214 CCAGAATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTT
*
486234 CCAAAATCGCAA
1 CCAGAATCGCAA
486246 CGCGATTCTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.38, C:0.27, G:0.13, T:0.21
Consensus pattern (20 bp):
CCAGAATCGCAAATCAGTTT
Found at i:486262 original size:21 final size:20
Alignment explanation
Indices: 486235--486333 Score: 72
Period size: 21 Copynumber: 4.8 Consensus size: 20
486225 AATCAGTTTC
486235 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * * *
486256 GAAAATCGCGATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
486277 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* *
486297 CCAAAATCGCAACGCGAATAT
1 -CAAAATCGCAACGCGATTTT
*
486318 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
486334 ACACATAAAT
Statistics
Matches: 59, Mismatches: 17, Indels: 5
0.73 0.21 0.06
Matches are distributed among these distances:
20 16 0.27
21 43 0.73
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.21
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:486362 original size:20 final size:20
Alignment explanation
Indices: 486300--486493 Score: 221
Period size: 20 Copynumber: 9.7 Consensus size: 20
486290 CGATTTTCCA
* ** *
486300 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGTATCCGT
* *
486320 AAATCGCAACGCG-AACACAT
1 AAATCGCAACGCGTATC-CGT
486340 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
486360 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
**
486380 AAATCGCAACGCGTATGGGT
1 AAATCGCAACGCGTATCCGT
*
486400 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
486420 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
* * *
486440 AAATCGCAACG-ATAATACAT
1 AAATCGCAACGCGT-ATCCGT
486460 AAAATCGCAACGCGTATCCGT
1 -AAATCGCAACGCGTATCCGT
486481 AAATCGCAACGCG
1 AAATCGCAACGCG
486494 ATATTTAAAG
Statistics
Matches: 146, Mismatches: 23, Indels: 10
0.82 0.13 0.06
Matches are distributed among these distances:
19 2 0.01
20 126 0.86
21 17 0.12
22 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.19
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:486384 original size:60 final size:60
Alignment explanation
Indices: 486300--486493 Score: 253
Period size: 60 Copynumber: 3.2 Consensus size: 60
486290 CGATTTTCCA
* ** * *
486300 AAATCGCAACGCGAATATGAAAATCGCAACGCGAACACATAAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGT
* * *** *
486360 AAATCGCAACGTGTATCCGTAAATCGCAACGCGTATGGGTAAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGT
* **
486420 ATATCGCAACGCGTATCCGTAAATCGCAACGATAATACATAAAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACAT-AAATCGCAACGCGTATCCGT
486481 AAATCGCAACGCG
1 AAATCGCAACGCG
486494 ATATTTAAAG
Statistics
Matches: 112, Mismatches: 21, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
60 81 0.72
61 31 0.28
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.19
Consensus pattern (60 bp):
AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGT
Found at i:486912 original size:33 final size:33
Alignment explanation
Indices: 486873--486943 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
486863 TTCACTTAGA
*
486873 TTTCATTTCGCGTTACGATTCTGTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
* *
486906 TTTCATTTCGCGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
486939 TTTCA
1 TTTCA
486944 AGTTAGTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.11, C:0.23, G:0.18, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
Found at i:487083 original size:14 final size:14
Alignment explanation
Indices: 487064--487118 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
487054 AGAATGACTG
487064 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
*
487078 TCGCAACGCGAAATGGAAA
1 TCGCAA--CGAGA--G-AA
487097 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
487111 TCGCAACG
1 TCGCAACG
487119 CGAAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 16 0.47
15 1 0.03
16 4 0.12
17 4 0.12
18 1 0.03
19 8 0.24
ACGTcount: A:0.40, C:0.24, G:0.27, T:0.09
Consensus pattern (14 bp):
TCGCAACGAGAGAA
Done.